Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580100 | XP_003600750.2 | 75.714 | 140 | 34 | 0 | 1 | 140 | 1 | 140 | 1.39e-67 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580100 | sp|P62926|ALB1A_PEA | 43.796 | 137 | 63 | 6 | 1 | 135 | 1 | 125 | 7.24e-24 | 92.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580100 | G7J9G6 | 75.714 | 140 | 34 | 0 | 1 | 140 | 1 | 140 | 6.63e-68 | 211 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0580100 | 0.803829 | 2.892561e-49 | -8.615850e-47 |
| Msa0013040 | Msa0580100 | 0.840305 | 9.420681e-58 | -8.615850e-47 |
| Msa0014590 | Msa0580100 | 0.807796 | 4.242910e-50 | -8.615850e-47 |
| Msa0043120 | Msa0580100 | 0.809793 | 1.587358e-50 | -8.615850e-47 |
| Msa0062010 | Msa0580100 | 0.848177 | 7.237394e-60 | -8.615850e-47 |
| Msa0063540 | Msa0580100 | 0.819205 | 1.312479e-52 | -8.615850e-47 |
| Msa0108350 | Msa0580100 | 0.831109 | 2.011098e-55 | -8.615850e-47 |
| Msa0134570 | Msa0580100 | 0.816370 | 5.728223e-52 | -8.615850e-47 |
| Msa0142560 | Msa0580100 | 0.800879 | 1.171806e-48 | -8.615850e-47 |
| Msa0150910 | Msa0580100 | 0.808184 | 3.508673e-50 | -8.615850e-47 |
| Msa0150920 | Msa0580100 | 0.812775 | 3.578530e-51 | -8.615850e-47 |
| Msa0163340 | Msa0580100 | 0.819865 | 9.279162e-53 | -8.615850e-47 |
| Msa0190670 | Msa0580100 | 0.827925 | 1.195205e-54 | -8.615850e-47 |
| Msa0190890 | Msa0580100 | 0.828737 | 7.613702e-55 | -8.615850e-47 |
| Msa0195580 | Msa0580100 | 0.805885 | 1.075516e-49 | -8.615850e-47 |
| Msa0196260 | Msa0580100 | 0.806676 | 7.326163e-50 | -8.615850e-47 |
| Msa0212550 | Msa0580100 | 0.805690 | 1.181643e-49 | -8.615850e-47 |
| Msa0220090 | Msa0580100 | 0.820962 | 5.197679e-53 | -8.615850e-47 |
| Msa0233210 | Msa0580100 | 0.826069 | 3.321320e-54 | -8.615850e-47 |
| Msa0236940 | Msa0580100 | 0.809828 | 1.560299e-50 | -8.615850e-47 |
| Msa0238110 | Msa0580100 | 0.809053 | 2.288704e-50 | -8.615850e-47 |
| Msa0368290 | Msa0580100 | 0.916367 | 1.939211e-85 | -8.615850e-47 |
| Msa0374040 | Msa0580100 | 0.820664 | 6.086188e-53 | -8.615850e-47 |
| Msa0375860 | Msa0580100 | 0.803530 | 3.336626e-49 | -8.615850e-47 |
| Msa0396860 | Msa0580100 | 0.803485 | 3.407862e-49 | -8.615850e-47 |
| Msa0424540 | Msa0580100 | 0.805413 | 1.351368e-49 | -8.615850e-47 |
| Msa0444210 | Msa0580100 | 0.803033 | 4.227432e-49 | -8.615850e-47 |
| Msa0444250 | Msa0580100 | 0.807789 | 4.257200e-50 | -8.615850e-47 |
| Msa0251120 | Msa0580100 | 0.811287 | 7.549353e-51 | -8.615850e-47 |
| Msa0261400 | Msa0580100 | 0.827232 | 1.752695e-54 | -8.615850e-47 |
| Msa0272210 | Msa0580100 | 0.807629 | 4.604350e-50 | -8.615850e-47 |
| Msa0277520 | Msa0580100 | 0.803430 | 3.499516e-49 | -8.615850e-47 |
| Msa0281190 | Msa0580100 | 0.811577 | 6.529182e-51 | -8.615850e-47 |
| Msa0299030 | Msa0580100 | 0.840128 | 1.048020e-57 | -8.615850e-47 |
| Msa0326770 | Msa0580100 | 0.808990 | 2.360042e-50 | -8.615850e-47 |
| Msa0342660 | Msa0580100 | 0.804666 | 1.936064e-49 | -8.615850e-47 |
| Msa0348370 | Msa0580100 | 0.804297 | 2.311769e-49 | -8.615850e-47 |
| Msa0349910 | Msa0580100 | 0.831890 | 1.291545e-55 | -8.615850e-47 |
| Msa0349930 | Msa0580100 | 0.812176 | 4.837215e-51 | -8.615850e-47 |
| Msa0491770 | Msa0580100 | 0.800603 | 1.334042e-48 | -8.615850e-47 |
| Msa0491830 | Msa0580100 | 0.827293 | 1.694350e-54 | -8.615850e-47 |
| Msa0502970 | Msa0580100 | 0.801663 | 8.097456e-49 | -8.615850e-47 |
| Msa0515130 | Msa0580100 | 0.805822 | 1.108910e-49 | -8.615850e-47 |
| Msa0523720 | Msa0580100 | 0.809643 | 1.709869e-50 | -8.615850e-47 |
| Msa0530990 | Msa0580100 | 0.803196 | 3.912879e-49 | -8.615850e-47 |
| Msa0535570 | Msa0580100 | 0.825886 | 3.670388e-54 | -8.615850e-47 |
| Msa0539620 | Msa0580100 | 0.818993 | 1.466787e-52 | -8.615850e-47 |
| Msa0549920 | Msa0580100 | 0.802548 | 5.323958e-49 | -8.615850e-47 |
| Msa0555920 | Msa0580100 | 0.823805 | 1.136441e-53 | -8.615850e-47 |
| Msa0565700 | Msa0580100 | 0.803460 | 3.450112e-49 | -8.615850e-47 |
| Msa0580100 | Msa0591490 | 0.836038 | 1.182676e-56 | -8.615850e-47 |
| Msa0580100 | Msa0594630 | 0.802216 | 6.232228e-49 | -8.615850e-47 |
| Msa0580100 | Msa0609460 | 0.804572 | 2.025808e-49 | -8.615850e-47 |
| Msa0580100 | Msa0628140 | 0.803525 | 3.344664e-49 | -8.615850e-47 |
| Msa0580100 | Msa0643190 | 0.807895 | 4.042286e-50 | -8.615850e-47 |
| Msa0580100 | Msa0643840 | 0.807050 | 6.106887e-50 | -8.615850e-47 |
| Msa0580100 | Msa0670360 | 0.808872 | 2.501659e-50 | -8.615850e-47 |
| Msa0580100 | Msa0671640 | 0.830078 | 3.595389e-55 | -8.615850e-47 |
| Msa0580100 | Msa0692090 | 0.821690 | 3.530933e-53 | -8.615850e-47 |
| Msa0580100 | Msa0708680 | 0.812869 | 3.411845e-51 | -8.615850e-47 |
| Msa0580100 | Msa0711260 | 0.807184 | 5.720902e-50 | -8.615850e-47 |
| Msa0580100 | Msa0715220 | 0.811246 | 7.706043e-51 | -8.615850e-47 |
| Msa0580100 | Msa0732970 | 0.806301 | 8.791383e-50 | -8.615850e-47 |
| Msa0580100 | Msa0735140 | 0.831598 | 1.524715e-55 | -8.615850e-47 |
| Msa0580100 | Msa0739720 | 0.811238 | 7.735967e-51 | -8.615850e-47 |
| Msa0580100 | Msa0761420 | 0.802835 | 4.646777e-49 | -8.615850e-47 |
| Msa0580100 | Msa0768670 | 0.831327 | 1.777611e-55 | -8.615850e-47 |
| Msa0580100 | Msa0768720 | 0.829114 | 6.169513e-55 | -8.615850e-47 |
| Msa0580100 | Msa0773960 | 0.808625 | 2.824386e-50 | -8.615850e-47 |
| Msa0580100 | Msa0777060 | 0.812224 | 4.720465e-51 | -8.615850e-47 |
| Msa0580100 | Msa0777070 | 0.804287 | 2.322669e-49 | -8.615850e-47 |
| Msa0580100 | Msa0786940 | 0.816341 | 5.811967e-52 | -8.615850e-47 |
| Msa0580100 | Msa0806930 | 0.817738 | 2.821671e-52 | -8.615850e-47 |
| Msa0580100 | Msa0814160 | 0.837082 | 6.411391e-57 | -8.615850e-47 |
| Msa0580100 | Msa0822400 | 0.820205 | 7.754843e-53 | -8.615850e-47 |
| Msa0580100 | Msa0822410 | 0.838547 | 2.695410e-57 | -8.615850e-47 |
| Msa0580100 | Msa0831890 | 0.819970 | 8.778395e-53 | -8.615850e-47 |
| Msa0580100 | Msa0854840 | 0.809936 | 1.478925e-50 | -8.615850e-47 |
| Msa0580100 | Msa0861730 | 0.842866 | 1.990128e-58 | -8.615850e-47 |
| Msa0580100 | Msa0886800 | 0.815156 | 1.067917e-51 | -8.615850e-47 |
| Msa0580100 | Msa0893840 | 0.805440 | 1.333818e-49 | -8.615850e-47 |
| Msa0580100 | Msa0896920 | 0.801816 | 7.531628e-49 | -8.615850e-47 |
| Msa0580100 | Msa0896950 | 0.815777 | 7.769236e-52 | -8.615850e-47 |
| Msa0580100 | Msa0913550 | 0.835071 | 2.076626e-56 | -8.615850e-47 |
| Msa0580100 | Msa0922090 | 0.822890 | 1.859332e-53 | -8.615850e-47 |
| Msa0580100 | Msa0932140 | 0.802497 | 5.454095e-49 | -8.615850e-47 |
| Msa0580100 | Msa0946010 | 0.814445 | 1.535038e-51 | -8.615850e-47 |
| Msa0580100 | Msa0951150 | 0.836498 | 9.032357e-57 | -8.615850e-47 |
| Msa0580100 | Msa0987640 | 0.839715 | 1.342052e-57 | -8.615850e-47 |
| Msa0580100 | Msa0993450 | 0.806821 | 6.827971e-50 | -8.615850e-47 |
| Msa0580100 | Msa1006170 | 0.816559 | 5.196713e-52 | -8.615850e-47 |
| Msa0580100 | Msa1006220 | 0.820143 | 8.014972e-53 | -8.615850e-47 |
| Msa0580100 | Msa1018590 | 0.816990 | 4.158225e-52 | -8.615850e-47 |
| Msa0580100 | Msa1021620 | 0.817389 | 3.382154e-52 | -8.615850e-47 |
| Msa0580100 | Msa1022490 | 0.820686 | 6.016896e-53 | -8.615850e-47 |
| Msa0580100 | Msa1022510 | 0.818845 | 1.584461e-52 | -8.615850e-47 |
| Msa0580100 | Msa1024350 | 0.822590 | 2.183210e-53 | -8.615850e-47 |
| Msa0580100 | Msa1030320 | 0.800615 | 1.326107e-48 | -8.615850e-47 |
| Msa0580100 | Msa1055450 | 0.840524 | 8.254552e-58 | -8.615850e-47 |
| Msa0580100 | Msa1061670 | 0.821524 | 3.856797e-53 | -8.615850e-47 |
| Msa0580100 | Msa1063210 | 0.804247 | 2.367164e-49 | -8.615850e-47 |
| Msa0580100 | Msa1068080 | 0.809460 | 1.871689e-50 | -8.615850e-47 |
| Msa0580100 | Msa1100030 | 0.819744 | 9.890041e-53 | -8.615850e-47 |
| Msa0580100 | Msa1106680 | 0.834268 | 3.306605e-56 | -8.615850e-47 |
| Msa0580100 | Msa1106960 | 0.812455 | 4.202579e-51 | -8.615850e-47 |
| Msa0580100 | Msa1120680 | 0.865482 | 5.721023e-65 | -8.615850e-47 |
| Msa0580100 | Msa1147030 | 0.851160 | 1.063414e-60 | -8.615850e-47 |
| Msa0580100 | Msa1152180 | 0.817540 | 3.126862e-52 | -8.615850e-47 |
| Msa0580100 | Msa1156240 | 0.819312 | 1.240517e-52 | -8.615850e-47 |
| Msa0580100 | Msa1157210 | 0.805663 | 1.197376e-49 | -8.615850e-47 |
| Msa0580100 | Msa1170320 | 0.802603 | 5.187196e-49 | -8.615850e-47 |
| Msa0580100 | Msa1170340 | 0.808265 | 3.371551e-50 | -8.615850e-47 |
| Msa0580100 | Msa1181090 | 0.821260 | 4.438807e-53 | -8.615850e-47 |
| Msa0580100 | Msa1191350 | 0.803364 | 3.611636e-49 | -8.615850e-47 |
| Msa0580100 | Msa1191640 | 0.807235 | 5.580162e-50 | -8.615850e-47 |
| Msa0580100 | Msa1205910 | 0.816418 | 5.587875e-52 | -8.615850e-47 |
| Msa0580100 | Msa1225850 | 0.803796 | 2.937731e-49 | -8.615850e-47 |
| Msa0580100 | Msa1233630 | 0.834005 | 3.847326e-56 | -8.615850e-47 |
| Msa0580100 | Msa1253750 | 0.803543 | 3.315526e-49 | -8.615850e-47 |
| Msa0580100 | Msa1267990 | 0.800563 | 1.358874e-48 | -8.615850e-47 |
| Msa0580100 | Msa1275850 | 0.808019 | 3.803841e-50 | -8.615850e-47 |
| Msa0580100 | Msa1300610 | 0.801781 | 7.656958e-49 | -8.615850e-47 |
| Msa0580100 | Msa1313840 | 0.836085 | 1.150371e-56 | -8.615850e-47 |
| Msa0580100 | Msa1319030 | 0.804280 | 2.330242e-49 | -8.615850e-47 |
| Msa0580100 | Msa1319190 | 0.815281 | 1.001926e-51 | -8.615850e-47 |
| Msa0580100 | Msa1323120 | 0.804019 | 2.640139e-49 | -8.615850e-47 |
| Msa0580100 | Msa1329740 | 0.819347 | 1.218348e-52 | -8.615850e-47 |
| Msa0580100 | Msa1347270 | 0.803039 | 4.217174e-49 | -8.615850e-47 |
| Msa0580100 | Msa1357860 | 0.847595 | 1.046953e-59 | -8.615850e-47 |
| Msa0580100 | Msa1406840 | 0.861738 | 8.305331e-64 | -8.615850e-47 |
| Msa0580100 | Msa1411550 | 0.806639 | 7.461947e-50 | -8.615850e-47 |
| Msa0580100 | Msa1421130 | 0.806655 | 7.401620e-50 | -8.615850e-47 |
| Msa0580100 | Msa1445900 | 0.812250 | 4.659149e-51 | -8.615850e-47 |
| Msa0580100 | Msa1459610 | 0.824076 | 9.815864e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580100 | MtrunA17_Chr3g0111111 | 75.714 | 140 | 34 | 0 | 1 | 140 | 1 | 140 | 1.28e-71 | 211 |
| Msa0580100 | MtrunA17_Chr3g0111191 | 71.795 | 117 | 33 | 0 | 1 | 117 | 1 | 117 | 1.48e-55 | 169 |
| Msa0580100 | MtrunA17_Chr3g0111281 | 58.865 | 141 | 56 | 2 | 1 | 140 | 1 | 140 | 1.76e-50 | 157 |
| Msa0580100 | MtrunA17_Chr3g0111261 | 58.571 | 140 | 54 | 2 | 1 | 140 | 1 | 136 | 6.53e-47 | 148 |
| Msa0580100 | MtrunA17_Chr3g0111351 | 52.083 | 144 | 57 | 3 | 1 | 140 | 9 | 144 | 8.24e-44 | 140 |
| Msa0580100 | MtrunA17_Chr3g0111081 | 57.664 | 137 | 50 | 5 | 1 | 136 | 1 | 130 | 1.83e-42 | 137 |
| Msa0580100 | MtrunA17_Chr6g0464071 | 52.817 | 142 | 57 | 4 | 1 | 140 | 1 | 134 | 8.12e-42 | 135 |
| Msa0580100 | MtrunA17_Chr3g0111241 | 51.429 | 140 | 58 | 2 | 1 | 140 | 1 | 130 | 1.93e-40 | 132 |
| Msa0580100 | MtrunA17_Chr3g0111131 | 52.593 | 135 | 56 | 4 | 1 | 133 | 1 | 129 | 1.98e-40 | 131 |
| Msa0580100 | MtrunA17_Chr3g0111071 | 54.745 | 137 | 54 | 4 | 1 | 136 | 1 | 130 | 5.01e-40 | 130 |
| Msa0580100 | MtrunA17_Chr3g0111711 | 68.932 | 103 | 29 | 3 | 1 | 102 | 1 | 101 | 6.81e-39 | 127 |
| Msa0580100 | MtrunA17_Chr3g0104571 | 49.286 | 140 | 63 | 4 | 1 | 138 | 1 | 134 | 8.24e-35 | 117 |
| Msa0580100 | MtrunA17_Chr7g0236791 | 46.154 | 143 | 69 | 3 | 1 | 140 | 1 | 138 | 4.36e-33 | 113 |
| Msa0580100 | MtrunA17_Chr7g0236801 | 46.528 | 144 | 68 | 5 | 1 | 140 | 1 | 139 | 1.11e-32 | 112 |
| Msa0580100 | MtrunA17_Chr3g0111221 | 54.167 | 120 | 48 | 3 | 22 | 140 | 1 | 114 | 7.42e-31 | 107 |
| Msa0580100 | MtrunA17_Chr6g0456951 | 44.681 | 141 | 65 | 7 | 1 | 136 | 1 | 133 | 1.05e-29 | 104 |
| Msa0580100 | MtrunA17_Chr6g0468601 | 41.259 | 143 | 67 | 4 | 1 | 136 | 1 | 133 | 2.07e-29 | 103 |
| Msa0580100 | MtrunA17_Chr3g0111201 | 87.037 | 54 | 7 | 0 | 87 | 140 | 3 | 56 | 5.49e-29 | 100 |
| Msa0580100 | MtrunA17_Chr3g0111311 | 53.535 | 99 | 39 | 3 | 22 | 120 | 1 | 92 | 1.31e-28 | 100 |
| Msa0580100 | MtrunA17_Chr1g0153591 | 42.520 | 127 | 55 | 3 | 1 | 126 | 1 | 110 | 2.56e-27 | 97.8 |
| Msa0580100 | MtrunA17_Chr6g0468621 | 41.135 | 141 | 67 | 4 | 1 | 136 | 1 | 130 | 5.19e-27 | 97.8 |
| Msa0580100 | MtrunA17_Chr3g0090571 | 38.961 | 154 | 74 | 6 | 1 | 138 | 1 | 150 | 6.15e-27 | 98.2 |
| Msa0580100 | MtrunA17_Chr7g0232011 | 43.548 | 124 | 59 | 4 | 1 | 123 | 1 | 114 | 4.11e-24 | 90.9 |
| Msa0580100 | MtrunA17_Chr8g0359071 | 38.843 | 121 | 64 | 2 | 3 | 121 | 4 | 116 | 2.34e-23 | 88.6 |
| Msa0580100 | MtrunA17_Chr4g0012121 | 41.781 | 146 | 68 | 5 | 1 | 136 | 1 | 139 | 2.35e-23 | 89.0 |
| Msa0580100 | MtrunA17_Chr8g0344801 | 42.105 | 95 | 48 | 2 | 43 | 136 | 7 | 95 | 7.34e-20 | 78.6 |
| Msa0580100 | MtrunA17_Chr6g0456991 | 44.318 | 88 | 42 | 2 | 43 | 129 | 27 | 108 | 1.94e-19 | 77.8 |
| Msa0580100 | MtrunA17_Chr8g0344771 | 40.678 | 118 | 59 | 6 | 22 | 136 | 1 | 110 | 1.48e-18 | 75.9 |
| Msa0580100 | MtrunA17_Chr7g0231991 | 38.806 | 134 | 59 | 4 | 22 | 138 | 1 | 128 | 2.13e-18 | 75.9 |
| Msa0580100 | MtrunA17_Chr8g0344791 | 39.130 | 115 | 60 | 5 | 22 | 133 | 1 | 108 | 7.31e-18 | 73.9 |
| Msa0580100 | MtrunA17_Chr7g0225821 | 36.719 | 128 | 70 | 5 | 1 | 124 | 1 | 121 | 2.85e-17 | 72.8 |
| Msa0580100 | MtrunA17_Chr8g0357331 | 36.458 | 96 | 40 | 2 | 64 | 138 | 2 | 97 | 3.01e-12 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 19 sgRNAs with CRISPR-Local
Find 29 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAATTCTAATCTCAAATA+TGG | 0.216722 | 4_1:-85144972 | Msa0580100:CDS |
| CCATATTTGAGATTAGAATT+TGG | 0.241765 | 4_1:+85144972 | None:intergenic |
| TGTACGATCGGTTATTGTTA+TGG | 0.354008 | 4_1:-85145119 | Msa0580100:CDS |
| GTCTTCTTGCTTGCTGCATT+CGG | 0.367498 | 4_1:-85145408 | Msa0580100:intron |
| TTTGCTTCTACTTTCTTCAT+TGG | 0.374147 | 4_1:+85145212 | None:intergenic |
| CTTGTAAGCGTCTTGTGCTT+CGG | 0.409202 | 4_1:+85144929 | None:intergenic |
| GAAAATCGCAATGTGGTAAG+TGG | 0.449479 | 4_1:-85145089 | Msa0580100:CDS |
| TTGACATATCAATATTAAGC+AGG | 0.480895 | 4_1:+85144858 | None:intergenic |
| TTTCTTGAATTTATAGCTAG+AGG | 0.515321 | 4_1:+85144902 | None:intergenic |
| AGGAACATCCTAAGTTATGT+TGG | 0.542665 | 4_1:-85145046 | Msa0580100:CDS |
| TCATGAGACCAACATAACTT+AGG | 0.547157 | 4_1:+85145038 | None:intergenic |
| AAAGTAGAAGCAAATTGTGA+TGG | 0.553230 | 4_1:-85145203 | Msa0580100:CDS |
| AAACTCGTTGGTTGTACGAT+CGG | 0.575852 | 4_1:-85145131 | Msa0580100:CDS |
| AGCACAAGACGCTTACAAGA+TGG | 0.577959 | 4_1:-85144925 | Msa0580100:CDS |
| AAAATCGCAATGTGGTAAGT+GGG | 0.583821 | 4_1:-85145088 | Msa0580100:CDS |
| GGTTGTAAATGCAAACTCGT+TGG | 0.593162 | 4_1:-85145143 | Msa0580100:CDS |
| GTCTTGTGCTTCGGAGACAG+AGG | 0.642879 | 4_1:+85144938 | None:intergenic |
| TTTATGCTAGACTGTGATAG+CGG | 0.659883 | 4_1:-85145164 | Msa0580100:CDS |
| TACCTGCGAAAATCGCAATG+TGG | 0.731640 | 4_1:-85145096 | Msa0580100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTATTATTATATTAA+TGG | - | chr4_1:85145023-85145042 | Msa0580100:CDS | 0.0% |
| ! | AATGCATGAATGGTATATAT+TGG | + | chr4_1:85144952-85144971 | None:intergenic | 25.0% |
| ! | CATAAATAGAAATGCATGAA+TGG | + | chr4_1:85144962-85144981 | None:intergenic | 25.0% |
| !! | CCATATTTGAGATTAGAATT+TGG | + | chr4_1:85145341-85145360 | None:intergenic | 25.0% |
| ! | CCAAATTCTAATCTCAAATA+TGG | - | chr4_1:85145338-85145357 | Msa0580100:intron | 25.0% |
| ! | TTTCTTGAATTTATAGCTAG+AGG | + | chr4_1:85145411-85145430 | None:intergenic | 25.0% |
| TTTGCTTCTACTTTCTTCAT+TGG | + | chr4_1:85145101-85145120 | None:intergenic | 30.0% | |
| AAAGTAGAAGCAAATTGTGA+TGG | - | chr4_1:85145107-85145126 | Msa0580100:CDS | 30.0% | |
| TCATGATGAATGCACAAAAA+AGG | - | chr4_1:85145289-85145308 | Msa0580100:intron | 30.0% | |
| CATGATGAATGCACAAAAAA+GGG | - | chr4_1:85145290-85145309 | Msa0580100:intron | 30.0% | |
| TTTATGCTAGACTGTGATAG+CGG | - | chr4_1:85145146-85145165 | Msa0580100:CDS | 35.0% | |
| TGTACGATCGGTTATTGTTA+TGG | - | chr4_1:85145191-85145210 | Msa0580100:CDS | 35.0% | |
| AAAATCGCAATGTGGTAAGT+GGG | - | chr4_1:85145222-85145241 | Msa0580100:CDS | 35.0% | |
| ! | GAATTTTCAGAGGAAGGTTA+AGG | - | chr4_1:85145244-85145263 | Msa0580100:intron | 35.0% |
| AGGAACATCCTAAGTTATGT+TGG | - | chr4_1:85145264-85145283 | Msa0580100:intron | 35.0% | |
| TCATGAGACCAACATAACTT+AGG | + | chr4_1:85145275-85145294 | None:intergenic | 35.0% | |
| AATGCACAAAAAAGGGTAGT+GGG | - | chr4_1:85145297-85145316 | Msa0580100:intron | 35.0% | |
| GGTTGTAAATGCAAACTCGT+TGG | - | chr4_1:85145167-85145186 | Msa0580100:CDS | 40.0% | |
| ! | AAACTCGTTGGTTGTACGAT+CGG | - | chr4_1:85145179-85145198 | Msa0580100:CDS | 40.0% |
| GAAAATCGCAATGTGGTAAG+TGG | - | chr4_1:85145221-85145240 | Msa0580100:CDS | 40.0% | |
| ! | TGGTAAGTGGGAATTTTCAG+AGG | - | chr4_1:85145234-85145253 | Msa0580100:intron | 40.0% |
| ! | AAGTGGGAATTTTCAGAGGA+AGG | - | chr4_1:85145238-85145257 | Msa0580100:intron | 40.0% |
| GAATGCACAAAAAAGGGTAG+TGG | - | chr4_1:85145296-85145315 | Msa0580100:intron | 40.0% | |
| ! | GTCTTCTTGCTTGCTGCATT+CGG | - | chr4_1:85144902-85144921 | Msa0580100:CDS | 45.0% |
| TACCTGCGAAAATCGCAATG+TGG | - | chr4_1:85145214-85145233 | Msa0580100:CDS | 45.0% | |
| ! | TACCACATTGCGATTTTCGC+AGG | + | chr4_1:85145219-85145238 | None:intergenic | 45.0% |
| CTTGTAAGCGTCTTGTGCTT+CGG | + | chr4_1:85145384-85145403 | None:intergenic | 45.0% | |
| AGCACAAGACGCTTACAAGA+TGG | - | chr4_1:85145385-85145404 | Msa0580100:intron | 45.0% | |
| GTCTTGTGCTTCGGAGACAG+AGG | + | chr4_1:85145375-85145394 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 85144872 | 85145460 | 85144872 | ID=Msa0580100;Name=Msa0580100 |
| chr4_1 | mRNA | 85144872 | 85145460 | 85144872 | ID=Msa0580100-mRNA-1;Parent=Msa0580100;Name=Msa0580100-mRNA-1;_AED=0.19;_eAED=0.20;_QI=0|1|0|1|1|1|2|0|140 |
| chr4_1 | exon | 85145409 | 85145460 | 85145409 | ID=Msa0580100-mRNA-1:exon:31181;Parent=Msa0580100-mRNA-1 |
| chr4_1 | exon | 85144872 | 85145242 | 85144872 | ID=Msa0580100-mRNA-1:exon:31180;Parent=Msa0580100-mRNA-1 |
| chr4_1 | CDS | 85145409 | 85145460 | 85145409 | ID=Msa0580100-mRNA-1:cds;Parent=Msa0580100-mRNA-1 |
| chr4_1 | CDS | 85144872 | 85145242 | 85144872 | ID=Msa0580100-mRNA-1:cds;Parent=Msa0580100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
