AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0548340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548340 MtrunA17_Chr4g0031431 98.640 662 9 0 1 662 1 662 0.0 1338
Msa0548340 MtrunA17_Chr1g0199321 55.128 624 266 3 6 629 12 621 0.0 645
Msa0548340 MtrunA17_Chr7g0237931 52.265 618 269 5 9 626 14 605 0.0 614
Msa0548340 MtrunA17_Chr7g0248251 42.742 620 337 4 12 628 38 642 9.74e-164 484
Msa0548340 MtrunA17_Chr4g0044411 57.784 379 158 1 255 631 273 651 1.44e-147 443
Msa0548340 MtrunA17_Chr4g0044411 40.152 132 52 5 25 137 39 162 6.86e-12 68.6
Msa0548340 MtrunA17_Chr5g0437411 36.189 677 378 16 9 637 24 694 1.50e-117 367
Msa0548340 MtrunA17_Chr2g0284461 37.519 661 371 17 6 635 33 682 8.46e-108 342
Msa0548340 MtrunA17_Chr7g0275081 40.941 425 227 12 213 628 43 452 1.66e-85 276
Msa0548340 MtrunA17_Chr7g0234671 37.897 409 228 10 231 629 60 452 4.83e-80 261
Msa0548340 MtrunA17_Chr3g0106931 54.448 281 127 1 351 631 551 830 2.60e-79 269
Msa0548340 MtrunA17_Chr3g0106931 28.525 305 191 8 26 328 27 306 4.65e-27 117
Msa0548340 MtrunA17_Chr7g0261371 48.399 281 144 1 351 631 512 791 4.50e-72 248
Msa0548340 MtrunA17_Chr7g0261371 25.538 325 186 7 23 330 31 316 2.39e-24 108
Msa0548340 MtrunA17_Chr1g0183781 46.263 281 150 1 351 631 438 717 2.14e-68 237
Msa0548340 MtrunA17_Chr1g0183781 27.469 324 199 8 9 322 11 308 1.15e-23 106
Msa0548340 MtrunA17_Chr1g0152561 45.423 284 150 1 353 631 61 344 7.33e-68 225
Msa0548340 MtrunA17_Chr3g0117851 28.287 654 389 16 8 632 25 627 2.45e-67 233
Msa0548340 MtrunA17_Chr4g0059201 37.371 388 231 6 256 631 320 707 6.86e-67 233
Msa0548340 MtrunA17_Chr2g0290151 47.925 265 138 0 368 632 190 454 1.52e-64 220
Msa0548340 MtrunA17_Chr1g0189811 36.145 415 241 9 229 634 45 444 7.36e-63 215
Msa0548340 MtrunA17_Chr3g0134761 43.262 282 156 1 353 630 51 332 1.03e-61 209
Msa0548340 MtrunA17_Chr5g0413681 29.709 653 415 17 9 632 33 670 4.24e-60 213
Msa0548340 MtrunA17_Chr4g0013091 29.675 647 412 17 9 628 68 698 2.64e-59 212
Msa0548340 MtrunA17_Chr3g0122721 25.362 690 410 17 60 653 53 733 1.36e-49 185
Msa0548340 MtrunA17_Chr8g0377151 26.042 672 389 18 60 633 54 715 7.26e-45 171
Msa0548340 MtrunA17_Chr2g0280671 31.649 376 227 11 259 623 19 375 1.37e-42 158
Msa0548340 MtrunA17_Chr3g0118001 35.842 279 168 4 354 626 212 485 8.45e-39 150
Msa0548340 MtrunA17_Chr1g0198984 57.143 112 48 0 268 379 1 112 1.35e-37 135
Msa0548340 MtrunA17_Chr4g0044631 32.134 389 237 12 255 628 14 390 2.94e-36 140
Msa0548340 MtrunA17_Chr7g0267501 28.641 412 250 12 249 628 2 401 1.00e-33 134
Msa0548340 MtrunA17_Chr3g0110121 25.355 422 268 13 242 634 23 426 9.04e-33 131
Msa0548340 MtrunA17_Chr5g0434171 27.681 401 246 15 255 627 35 419 6.21e-31 126
Msa0548340 MtrunA17_Chr6g0451581 31.746 252 167 3 375 623 260 509 2.07e-30 126
Msa0548340 MtrunA17_Chr4g0048811 26.455 378 211 9 252 624 2 317 8.02e-30 120
Msa0548340 MtrunA17_Chr5g0400971 27.322 366 244 7 255 613 67 417 1.68e-29 122
Msa0548340 MtrunA17_Chr2g0322021 32.198 323 189 10 255 559 6 316 6.17e-28 116
Msa0548340 MtrunA17_Chr8g0384041 27.342 395 253 12 255 624 10 395 1.11e-27 116
Msa0548340 MtrunA17_Chr6g0479261 27.338 417 241 17 255 630 25 420 1.73e-27 115
Msa0548340 MtrunA17_Chr5g0420471 26.859 417 243 17 255 630 25 420 4.75e-27 114
Msa0548340 MtrunA17_Chr3g0137061 31.834 289 177 8 351 624 108 391 1.39e-26 114
Msa0548340 MtrunA17_Chr1g0149941 32.624 282 169 9 368 634 189 464 1.76e-26 114
Msa0548340 MtrunA17_Chr1g0177281 25.481 416 255 12 259 628 11 417 1.83e-26 112
Msa0548340 MtrunA17_Chr8g0373031 23.370 629 385 20 33 612 31 611 1.93e-26 115
Msa0548340 MtrunA17_Chr3g0129811 28.894 398 241 14 255 624 83 466 3.50e-26 112
Msa0548340 MtrunA17_Chr1g0177261 25.240 416 256 12 259 628 11 417 3.96e-26 112
Msa0548340 MtrunA17_Chr1g0199031 50.435 115 40 1 429 543 17 114 4.24e-26 103
Msa0548340 MtrunA17_Chr5g0429231 33.574 277 179 4 353 624 34 310 1.33e-25 108
Msa0548340 MtrunA17_Chr5g0429231 28.522 291 155 5 311 550 31 319 8.63e-15 76.3
Msa0548340 MtrunA17_Chr1g0152291 25.260 384 263 8 255 627 45 415 1.07e-23 104
Msa0548340 MtrunA17_Chr1g0177271 25.298 419 252 13 259 628 11 417 3.86e-23 102
Msa0548340 MtrunA17_Chr5g0404311 48.235 85 42 1 246 330 266 348 4.95e-21 98.2
Msa0548340 MtrunA17_Chr8g0346441 23.826 596 397 17 27 607 37 590 1.29e-20 97.1
Msa0548340 MtrunA17_Chr2g0278251 47.107 121 60 3 402 520 7 125 1.42e-20 89.0
Msa0548340 MtrunA17_Chr3g0111451 33.700 273 174 5 357 624 45 315 1.43e-20 94.4
Msa0548340 MtrunA17_Chr8g0353271 30.303 297 187 9 348 626 3 297 8.43e-20 91.3
Msa0548340 MtrunA17_Chr5g0435041 27.083 288 169 4 339 624 46 294 8.47e-20 92.0
Msa0548340 MtrunA17_Chr3g0144071 26.027 365 229 11 254 605 29 365 1.07e-19 94.0
Msa0548340 MtrunA17_Chr1g0177301 25.369 406 239 13 255 624 6 383 1.70e-19 91.3
Msa0548340 MtrunA17_Chr7g0275961 22.621 557 373 12 1 544 10 521 2.88e-19 92.8
Msa0548340 MtrunA17_Chr1g0196911 38.356 146 79 7 256 399 507 643 1.21e-17 87.8
Msa0548340 MtrunA17_Chr4g0025501 27.469 324 191 13 255 550 6 313 3.04e-17 84.7
Msa0548340 MtrunA17_Chr8g0390311 35.878 131 77 4 221 349 363 488 5.89e-15 79.0
Msa0548340 MtrunA17_Chr1g0188041 28.065 367 223 13 254 588 261 618 1.39e-14 77.8
Msa0548340 MtrunA17_Chr5g0412171 47.761 67 35 0 255 321 732 798 1.91e-14 77.0
Msa0548340 MtrunA17_Chr2g0328101 48.529 68 35 0 254 321 739 806 9.53e-14 74.7
Msa0548340 MtrunA17_Chr1g0199021 76.316 38 9 0 250 287 20 57 2.75e-13 65.1
Msa0548340 MtrunA17_Chr7g0259851 28.829 222 154 3 353 571 185 405 4.61e-13 72.4
Msa0548340 MtrunA17_Chr7g0214471 39.437 71 42 1 252 321 592 662 2.10e-12 70.9
Msa0548340 MtrunA17_Chr7g0215741 31.169 154 103 1 382 532 588 741 3.25e-12 70.1
Msa0548340 MtrunA17_Chr1g0205751 30.769 195 131 4 353 544 198 391 3.50e-12 69.7
Msa0548340 MtrunA17_Chr1g0202971 48.485 66 34 0 256 321 649 714 3.51e-12 69.7
Msa0548340 MtrunA17_Chr3g0139981 34.667 150 94 3 490 636 152 300 3.59e-12 67.8
Msa0548340 MtrunA17_Chr5g0394261 29.381 194 135 2 353 544 195 388 6.97e-12 68.9
Msa0548340 MtrunA17_Chr7g0247831 37.000 100 58 3 226 325 802 896 1.03e-11 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548340 AT3G46510.1 68.092 655 202 3 1 652 1 651 0.0 885
Msa0548340 AT2G28830.1 65.832 559 177 9 86 635 17 570 0.0 698
Msa0548340 AT3G54850.1 53.376 622 275 4 4 624 11 618 0.0 618
Msa0548340 AT1G23030.1 44.252 635 303 9 9 628 11 609 1.06e-154 460
Msa0548340 AT5G42340.1 41.413 623 345 4 6 628 54 656 7.44e-153 457
Msa0548340 AT1G71020.1 44.700 651 288 14 9 628 11 620 1.18e-152 456
Msa0548340 AT1G71020.2 54.412 408 172 5 228 628 72 472 9.14e-137 409
Msa0548340 AT1G29340.1 36.254 582 335 14 72 628 117 687 9.63e-89 292
Msa0548340 AT3G07360.1 38.701 385 217 8 256 628 75 452 3.26e-82 267
Msa0548340 AT2G23140.3 49.518 311 146 3 331 634 325 631 3.00e-81 270
Msa0548340 AT2G23140.3 51.685 89 37 1 255 343 41 123 6.70e-24 107
Msa0548340 AT2G23140.5 49.518 311 146 3 331 634 325 631 3.00e-81 270
Msa0548340 AT2G23140.5 51.685 89 37 1 255 343 41 123 6.70e-24 107
Msa0548340 AT2G23140.1 49.518 311 146 3 331 634 517 823 1.51e-80 273
Msa0548340 AT2G23140.1 51.685 89 37 1 255 343 233 315 7.56e-24 107
Msa0548340 AT2G23140.2 49.518 311 146 3 331 634 514 820 1.55e-80 272
Msa0548340 AT2G23140.2 51.685 89 37 1 255 343 230 312 7.46e-24 107
Msa0548340 AT2G23140.4 49.518 311 146 3 331 634 514 820 1.55e-80 272
Msa0548340 AT2G23140.4 51.685 89 37 1 255 343 230 312 7.46e-24 107
Msa0548340 AT5G67340.1 46.865 303 155 3 333 634 407 704 5.54e-72 247
Msa0548340 AT5G67340.1 32.249 369 221 10 255 607 240 595 8.81e-39 153
Msa0548340 AT5G67340.2 46.865 303 155 3 333 634 407 704 5.54e-72 247
Msa0548340 AT5G67340.2 32.249 369 221 10 255 607 240 595 8.81e-39 153
Msa0548340 AT5G01830.1 29.580 666 384 18 14 642 42 659 1.32e-70 242
Msa0548340 AT3G01400.1 46.415 265 142 0 366 630 78 342 1.01e-64 218
Msa0548340 AT3G54790.2 47.653 277 143 2 356 631 441 716 3.59e-63 223
Msa0548340 AT3G54790.2 32.804 189 100 4 145 327 107 274 3.79e-21 99.0
Msa0548340 AT3G54790.2 34.270 178 113 4 349 524 517 692 7.90e-13 72.4
Msa0548340 AT3G54790.3 47.653 277 143 2 356 631 477 752 6.13e-63 223
Msa0548340 AT3G54790.3 32.804 189 100 4 145 327 143 310 4.30e-21 98.6
Msa0548340 AT3G54790.3 34.270 178 113 4 349 524 553 728 6.45e-13 72.4
Msa0548340 AT3G54790.1 47.653 277 143 2 356 631 477 752 6.13e-63 223
Msa0548340 AT3G54790.1 32.804 189 100 4 145 327 143 310 4.30e-21 98.6
Msa0548340 AT3G54790.1 34.270 178 113 4 349 524 553 728 6.45e-13 72.4
Msa0548340 AT5G58680.1 44.286 280 154 2 353 630 62 341 5.80e-62 210
Msa0548340 AT1G60190.1 29.147 621 407 17 35 633 60 669 4.66e-61 216
Msa0548340 AT1G24330.1 27.801 723 405 22 30 656 30 731 1.96e-58 211
Msa0548340 AT1G24330.2 27.801 723 405 22 30 656 30 731 1.96e-58 211
Msa0548340 AT4G16490.1 44.964 278 151 1 357 632 189 466 2.59e-56 199
Msa0548340 AT5G18320.1 35.128 390 226 11 255 629 72 449 1.41e-55 196
Msa0548340 AT1G67530.2 27.545 668 381 19 60 632 52 711 4.27e-55 201
Msa0548340 AT1G67530.1 27.545 668 381 19 60 632 52 711 4.27e-55 201
Msa0548340 AT1G67530.4 27.545 668 381 19 60 632 52 711 4.27e-55 201
Msa0548340 AT1G10560.1 27.871 653 409 18 27 637 52 684 2.71e-53 195
Msa0548340 AT3G07360.5 35.494 324 190 8 317 628 1 317 4.61e-53 186
Msa0548340 AT3G07360.3 35.494 324 190 8 317 628 1 317 4.61e-53 186
Msa0548340 AT3G07360.9 35.494 324 190 8 317 628 1 317 4.61e-53 186
Msa0548340 AT3G07360.6 35.494 324 190 8 317 628 1 317 4.61e-53 186
Msa0548340 AT3G07360.2 35.494 324 190 8 317 628 1 317 4.61e-53 186
Msa0548340 AT3G07360.8 35.494 324 190 8 317 628 1 317 4.61e-53 186
Msa0548340 AT3G07360.10 35.494 324 190 8 317 628 1 317 4.61e-53 186
Msa0548340 AT3G07360.7 35.494 324 190 8 317 628 1 317 4.61e-53 186
Msa0548340 AT3G07360.4 35.494 324 190 8 317 628 1 317 4.61e-53 186
Msa0548340 AT1G27910.1 26.126 666 394 17 60 634 52 710 3.29e-49 184
Msa0548340 AT4G21350.1 32.361 377 236 7 255 626 5 367 2.83e-48 174
Msa0548340 AT3G19380.1 34.301 379 213 13 255 610 14 379 2.87e-41 155
Msa0548340 AT5G18340.1 32.692 364 210 13 210 546 15 370 1.54e-39 152
Msa0548340 AT5G62560.1 35.971 278 171 3 354 626 237 512 1.93e-39 153
Msa0548340 AT5G62560.1 23.990 396 258 11 250 611 26 412 3.29e-14 76.3
Msa0548340 AT1G49780.1 32.741 394 230 12 255 624 14 396 5.60e-39 149
Msa0548340 AT2G35930.1 30.789 393 244 12 255 629 12 394 2.36e-36 141
Msa0548340 AT5G18330.1 29.240 342 217 8 255 585 65 392 3.23e-36 142
Msa0548340 AT5G65200.1 33.220 295 183 5 354 636 227 519 1.71e-34 139
Msa0548340 AT5G40140.1 31.757 296 192 4 333 624 214 503 5.66e-32 131
Msa0548340 AT5G40140.1 27.859 341 216 9 255 584 58 379 1.39e-20 96.3
Msa0548340 AT5G65920.1 28.499 393 258 10 243 627 48 425 2.93e-31 127
Msa0548340 AT5G65920.2 28.499 393 258 10 243 627 48 425 2.93e-31 127
Msa0548340 AT1G67530.3 28.664 307 186 7 60 337 52 354 5.72e-31 128
Msa0548340 AT4G31890.3 36.900 271 148 10 370 624 162 425 2.56e-30 125
Msa0548340 AT4G31890.2 36.900 271 148 10 370 624 162 425 2.56e-30 125
Msa0548340 AT4G31890.1 36.900 271 148 10 370 624 162 425 2.56e-30 125
Msa0548340 AT3G52450.1 27.869 427 249 15 251 629 3 418 5.32e-30 124
Msa0548340 AT3G47820.1 32.384 281 180 5 354 626 208 486 5.30e-28 119
Msa0548340 AT3G49810.1 28.084 381 251 10 255 627 64 429 1.54e-27 116
Msa0548340 AT1G66160.1 26.633 398 246 16 255 629 33 407 3.75e-27 115
Msa0548340 AT2G25130.1 34.173 278 159 10 374 634 132 402 1.30e-26 114
Msa0548340 AT5G09800.1 27.157 394 245 14 255 624 11 386 5.63e-26 111
Msa0548340 AT1G08315.1 29.966 297 187 9 348 624 4 299 9.45e-25 106
Msa0548340 AT5G37490.1 24.936 393 264 11 255 627 31 412 2.01e-24 107
Msa0548340 AT5G14510.1 34.173 278 170 8 354 623 3 275 4.98e-24 103
Msa0548340 AT5G64660.1 27.451 408 238 14 255 624 10 397 2.46e-22 100
Msa0548340 AT4G12710.1 27.000 300 176 5 338 633 77 337 2.09e-19 91.7
Msa0548340 AT1G66160.2 24.372 398 239 17 255 629 33 391 6.06e-18 87.0
Msa0548340 AT3G18710.1 23.450 371 238 13 247 590 4 355 3.82e-17 84.7
Msa0548340 AT3G03440.1 28.223 287 167 4 339 623 92 341 4.83e-17 84.3
Msa0548340 AT4G36550.1 43.243 74 42 0 255 328 219 292 6.26e-16 82.0
Msa0548340 AT1G76390.1 25.000 300 181 6 238 499 4 297 2.38e-15 80.5
Msa0548340 AT1G76390.2 25.000 300 181 6 238 499 4 297 2.38e-15 80.5
Msa0548340 AT1G20780.1 28.033 239 141 5 259 489 27 242 4.33e-15 79.7
Msa0548340 AT1G20780.2 28.033 239 141 5 259 489 27 242 4.33e-15 79.7
Msa0548340 AT1G20780.3 28.033 239 141 5 259 489 27 242 4.33e-15 79.7
Msa0548340 AT1G01680.1 47.222 72 38 0 254 325 232 303 9.05e-15 76.3
Msa0548340 AT2G45920.1 44.578 83 43 1 243 325 316 395 1.41e-14 76.6
Msa0548340 AT1G01660.2 40.217 92 50 2 235 326 483 569 3.96e-14 76.3
Msa0548340 AT1G01660.1 40.217 92 50 2 235 326 482 568 4.02e-14 76.3
Msa0548340 AT3G11840.1 45.556 90 47 2 247 335 2 90 5.42e-14 75.1
Msa0548340 AT2G44900.1 33.766 154 99 1 382 532 599 752 6.09e-14 75.9
Msa0548340 AT2G44900.2 33.766 154 99 1 382 532 599 752 6.09e-14 75.9
Msa0548340 AT3G60350.1 31.461 178 117 2 382 554 590 767 2.10e-13 74.3
Msa0548340 AT3G60350.2 31.461 178 117 2 382 554 590 767 2.10e-13 74.3
Msa0548340 AT5G65500.2 39.216 102 60 1 222 321 688 789 2.88e-13 73.9
Msa0548340 AT5G65500.1 39.216 102 60 1 222 321 680 781 3.21e-13 73.6
Msa0548340 AT3G61390.4 41.892 74 41 1 248 321 273 344 5.31e-13 71.6
Msa0548340 AT3G61390.2 41.892 74 41 1 248 321 348 419 8.13e-13 71.6
Msa0548340 AT5G13060.1 31.034 203 134 5 353 551 227 427 9.83e-13 72.0
Msa0548340 AT2G45910.2 40.000 95 52 3 231 325 744 833 1.75e-12 71.2
Msa0548340 AT2G45910.1 40.000 95 52 3 231 325 744 833 1.75e-12 71.2
Msa0548340 AT1G56040.1 49.231 65 33 0 256 320 354 418 2.11e-12 70.1
Msa0548340 AT2G27430.1 29.577 284 179 11 353 624 79 353 2.67e-12 69.7
Msa0548340 AT1G68940.1 28.689 244 139 8 248 482 293 510 5.17e-12 70.1
Msa0548340 AT1G68940.3 28.689 244 139 8 248 482 240 457 6.81e-12 69.3
Msa0548340 AT1G68940.2 28.689 244 139 8 248 482 293 510 7.42e-12 69.3
Msa0548340 AT5G57035.1 43.939 66 37 0 256 321 709 774 9.69e-12 68.9

Find 193 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAATTTGTGCATTTATC+AGG 0.177369 4_1:-42274488 Msa0548340:CDS
TCCTTTGTTACTCTCATATA+TGG 0.195722 4_1:+42274723 None:intergenic
CTGCATTCTCTTTGTTCCTT+GGG 0.231918 4_1:+42274275 None:intergenic
TATTTATAGCTTCTCTTTGT+TGG 0.247483 4_1:-42273648 Msa0548340:three_prime_UTR
GCAGTAAGTGGTGGGGATCC+AGG 0.247820 4_1:-42276021 Msa0548340:CDS
GTGTCGGAGATTGTGGTTTC+CGG 0.251810 4_1:+42278606 None:intergenic
AAGGTTACAATTGGTTCTTC+AGG 0.278194 4_1:-42274583 Msa0548340:CDS
GGATGAAGCGTTGGCCATTT+TGG 0.278879 4_1:-42274386 Msa0548340:CDS
TTCAGTTATCGATGAAAATA+AGG 0.279171 4_1:-42274602 Msa0548340:CDS
CAGCATCTTTCTTACCCCTT+TGG 0.282789 4_1:+42274521 None:intergenic
AGCATCTTTCTTACCCCTTT+GGG 0.282881 4_1:+42274522 None:intergenic
GCTGCATTCTCTTTGTTCCT+TGG 0.285240 4_1:+42274274 None:intergenic
ACTAGCCAAAATTGCCAAAA+TGG 0.285425 4_1:+42274372 None:intergenic
GCTAAGGAACTTCTCAGATT+TGG 0.295867 4_1:-42278291 Msa0548340:CDS
ACAGCAAAAGGTGTTTCTTC+AGG 0.311919 4_1:-42275913 Msa0548340:CDS
CTTCACACCATTGTTCTATC+AGG 0.313644 4_1:+42275037 None:intergenic
CCAATGGCAGCTTTCCCTTC+AGG 0.315540 4_1:+42274346 None:intergenic
CATATATAAACAAAACATTT+AGG 0.321100 4_1:+42274000 None:intergenic
ATGCAAAATGCCATTTGAAA+TGG 0.323429 4_1:-42273860 Msa0548340:three_prime_UTR
GCAGCTGATCTCTGGTCTTC+AGG 0.329317 4_1:+42274892 None:intergenic
TCAATCTTACTTCGCTCAGC+TGG 0.330557 4_1:+42274946 None:intergenic
GACCACCGGATGTGAGCTTT+TGG 0.331751 4_1:+42274914 None:intergenic
CAGGCTGATGCTGATTTACT+TGG 0.340262 4_1:+42274973 None:intergenic
TGCTCTTGAGTTCGGGAGTC+TGG 0.340307 4_1:+42274772 None:intergenic
ATCTTCTCGATGCGCGCCCC+TGG 0.352916 4_1:+42276003 None:intergenic
TCCTTTGTTTGAAGAGATAA+GGG 0.360810 4_1:-42278382 Msa0548340:CDS
TGCAGAGGCAGTGCCGGTTT+TGG 0.360889 4_1:-42274320 Msa0548340:CDS
TGAAGGAAGCAAGATTTATA+TGG 0.361351 4_1:-42278265 Msa0548340:intron
TAACAGCGTGCTCTTGAGTT+CGG 0.361836 4_1:+42274764 None:intergenic
TTTACTTGGCTCAGAAGTGC+TGG 0.364982 4_1:+42274987 None:intergenic
TGAAAGGTGTGTGGTTTAGA+AGG 0.382168 4_1:+42278573 None:intergenic
GTTTCTTCCGGAGCAGTTCC+AGG 0.384381 4_1:-42274694 Msa0548340:CDS
TCTTCATACAACTTGGCATC+TGG 0.398945 4_1:+42276177 None:intergenic
TTTGAATATGTGAAAATACT+TGG 0.399387 4_1:+42273700 None:intergenic
TTCCTTTGTTTGAAGAGATA+AGG 0.399504 4_1:-42278383 Msa0548340:CDS
TCAGAAGTGCTGGGTCGTTT+TGG 0.401535 4_1:+42274997 None:intergenic
GGTGCAATCCCTCTCCTTGT+TGG 0.402601 4_1:-42274808 Msa0548340:CDS
AACAGCGTGCTCTTGAGTTC+GGG 0.403224 4_1:+42274765 None:intergenic
CGATCTGTTCCCATTTCAAA+TGG 0.404151 4_1:+42273850 None:intergenic
GCATAGTTCATGTGCTGAAA+AGG 0.405067 4_1:-42274672 Msa0548340:CDS
AGCAGACAAACTGCAATTGA+TGG 0.407067 4_1:-42276091 Msa0548340:CDS
GATGGCTCCATTGTTGGAAT+TGG 0.407719 4_1:-42274185 Msa0548340:CDS
TTGGTAGAGTTTATTGGGAA+TGG 0.407949 4_1:-42274301 Msa0548340:CDS
ATCATCAATTCCAAGGAAAT+CGG 0.412207 4_1:+42275823 None:intergenic
GATGAAAATAAGGTTACAAT+TGG 0.415858 4_1:-42274592 Msa0548340:CDS
GATTTCCTTGGAATTGATGA+TGG 0.417773 4_1:-42275821 Msa0548340:CDS
TCTCTCCGGCAGCTGATCTC+TGG 0.418758 4_1:+42274884 None:intergenic
GGGTAGAATGACATTACTTT+GGG 0.419083 4_1:+42273604 None:intergenic
TGGTTCATCAACTCTCCCTT+TGG 0.425568 4_1:+42276197 None:intergenic
AGGGTAGAATGACATTACTT+TGG 0.425729 4_1:+42273603 None:intergenic
CAGTAAGTGGTGGGGATCCA+GGG 0.426760 4_1:-42276020 Msa0548340:CDS
TGCAAAATGCCATTTGAAAT+GGG 0.430374 4_1:-42273859 Msa0548340:three_prime_UTR
CAATCTTACTTCGCTCAGCT+GGG 0.433494 4_1:+42274947 None:intergenic
TTCAGCACATGAACTATGCC+TGG 0.440688 4_1:+42274676 None:intergenic
ACTTCGCTCAGCTGGGGTGC+AGG 0.441160 4_1:+42274954 None:intergenic
TGGTTTAGAAGGTGGAGATT+TGG 0.441605 4_1:+42278584 None:intergenic
CCAATAAACTCTACCAAAAC+CGG 0.442490 4_1:+42274307 None:intergenic
CAGGCTTCGTAAGACATAGT+TGG 0.445273 4_1:+42275056 None:intergenic
AAAGGAAGCATTGTTTCTTC+CGG 0.446293 4_1:-42274706 Msa0548340:CDS
CATAGTTCATGTGCTGAAAA+GGG 0.446723 4_1:-42274671 Msa0548340:CDS
AGGGGTGATGGCTCCATTGT+TGG 0.452643 4_1:-42274191 Msa0548340:CDS
CACTGCCTCTGCAGCACCAA+TGG 0.454880 4_1:+42274330 None:intergenic
TCTTTAAAATGTGTTGAAAG+AGG 0.455786 4_1:-42273966 Msa0548340:three_prime_UTR
AGTAAACGTGGTGATTGATT+TGG 0.457278 4_1:-42278490 Msa0548340:CDS
GATCCTGTCATTGTTTCAAC+AGG 0.460722 4_1:-42275799 Msa0548340:CDS
CATTTAAAATCACTAGGAAT+AGG 0.461344 4_1:+42275847 None:intergenic
CGATGATATCCATCCACCTT+TGG 0.462065 4_1:-42274044 Msa0548340:CDS
GGATATGTCAAGTTTATCAT+AGG 0.464570 4_1:+42276432 None:intergenic
CTATGAGGTGACAGCTCGGT+TGG 0.464861 4_1:-42276476 Msa0548340:CDS
TGGTGCTGCAGAGGCAGTGC+CGG 0.466838 4_1:-42274326 Msa0548340:CDS
AAGGGGAAGCATGGAAGCTC+GGG 0.473966 4_1:-42274653 Msa0548340:CDS
GATGATACTAAAACAGCAAA+AGG 0.474082 4_1:-42275925 Msa0548340:CDS
TTCAATTTGTGCATTTATCA+GGG 0.475536 4_1:-42274487 Msa0548340:CDS
TACCTGCTCTTTAACTTCAT+CGG 0.476627 4_1:+42276411 None:intergenic
GATCAGCTGCCGGAGAGATC+CGG 0.476956 4_1:-42274879 Msa0548340:CDS
CTTCTCAGATTTGGTTGTGA+AGG 0.479378 4_1:-42278282 Msa0548340:CDS
CATAGAAATTATTCATGATC+CGG 0.482794 4_1:+42276494 None:intergenic
AGATTTGGTGTCGGAGATTG+TGG 0.484296 4_1:+42278599 None:intergenic
AGCTCGGTTGGAACAATCAC+TGG 0.485729 4_1:-42276464 Msa0548340:CDS
TACAGGTCCTTGAGAGGGAC+CGG 0.487024 4_1:-42276513 Msa0548340:intron
GGCACAAGAGCTAGGGGTGA+TGG 0.490630 4_1:-42274203 Msa0548340:CDS
ACATTTAGGTGTCAATATCA+AGG 0.490728 4_1:+42274014 None:intergenic
CAATATTGCTTCTTCACCAT+AGG 0.491132 4_1:+42278435 None:intergenic
AACTATGCCTGGAACTGCTC+CGG 0.492510 4_1:+42274687 None:intergenic
GCTAATCGACTTAGAACAGC+TGG 0.505726 4_1:+42276111 None:intergenic
TATGAGCAGGATCCGTGAGC+AGG 0.507208 4_1:-42274110 Msa0548340:CDS
ATATAGAAGATGATTAGAAT+AGG 0.510294 4_1:+42273764 None:intergenic
AGGCATCGGTTCGGAAGAAA+AGG 0.511018 4_1:-42273946 Msa0548340:three_prime_UTR
CGTGTAGCTATTGCTGAAGC+TGG 0.512659 4_1:-42274829 Msa0548340:CDS
ATAGCACAGGCACAAGAGCT+AGG 0.513018 4_1:-42274211 Msa0548340:CDS
TGTCATTGTTTCAACAGGAC+AGG 0.513071 4_1:-42275794 Msa0548340:intron
TGCAAGAAGCCGGATCTCTC+CGG 0.513959 4_1:+42274870 None:intergenic
TTAAAATCACTAGGAATAGG+AGG 0.515426 4_1:+42275850 None:intergenic
TGCATTCTCTTTGTTCCTTG+GGG 0.517239 4_1:+42274276 None:intergenic
ATCCGATGAAGTTAAAGAGC+AGG 0.517885 4_1:-42276413 Msa0548340:intron
AGGCTTCGTAAGACATAGTT+GGG 0.521487 4_1:+42275057 None:intergenic
GAATGATACTTCAAAAGCGT+TGG 0.522140 4_1:-42278340 Msa0548340:CDS
GTGCATTTATCAGGGAAACA+AGG 0.522425 4_1:-42274479 Msa0548340:CDS
TTGTTGGAATTGGCTCAAAA+CGG 0.523595 4_1:-42274175 Msa0548340:CDS
GATGTTATTGAAGAAGATAA+AGG 0.525502 4_1:-42275977 Msa0548340:CDS
GATTGCTGACAGAACCTAGC+GGG 0.527827 4_1:-42274417 Msa0548340:CDS
AAATGTGTTGAAAGAGGCAT+CGG 0.528012 4_1:-42273960 Msa0548340:three_prime_UTR
TAGCACAGGCACAAGAGCTA+GGG 0.528830 4_1:-42274210 Msa0548340:CDS
AGCTGCCATTGGTGCTGCAG+AGG 0.529056 4_1:-42274335 Msa0548340:CDS
TCATGATCCGGTCCCTCTCA+AGG 0.529227 4_1:+42276506 None:intergenic
AGTGGTTGCAAGACGGCCAC+GGG 0.529594 4_1:-42275125 Msa0548340:CDS
AAGTGGTTGCAAGACGGCCA+CGG 0.537005 4_1:-42275126 Msa0548340:CDS
GCTGAGTGAGGGTACCCAAA+GGG 0.538821 4_1:-42274536 Msa0548340:CDS
AGATGCTCTTGATTCAGCTA+AGG 0.539952 4_1:-42278307 Msa0548340:CDS
CTTATCCAAAAGCTCACATC+CGG 0.540128 4_1:-42274919 Msa0548340:CDS
CATCTCAGACTTCAGACCTA+TGG 0.543799 4_1:-42278451 Msa0548340:CDS
CCTGAAGGGAAAGCTGCCAT+TGG 0.544099 4_1:-42274346 Msa0548340:CDS
AAAGGGGAAGCATGGAAGCT+CGG 0.545017 4_1:-42274654 Msa0548340:CDS
GTCAGCAATCGCATCAGCGT+CGG 0.546901 4_1:+42274430 None:intergenic
TGCATTTATCAGGGAAACAA+GGG 0.547628 4_1:-42274478 Msa0548340:CDS
TTACTTGGCTCAGAAGTGCT+GGG 0.549928 4_1:+42274988 None:intergenic
GGTTAATGACCAAAGGTGGA+TGG 0.555167 4_1:+42274035 None:intergenic
ACTCAGTTCAGAAGAGCCAA+AGG 0.555212 4_1:-42276213 Msa0548340:CDS
AAGGGAAAAGCAGTGAGGGC+TGG 0.555419 4_1:-42274460 Msa0548340:CDS
AAACAAACAAACGAATAACT+TGG 0.556244 4_1:+42273903 None:intergenic
ATCACTCGCTTTGCATGAGA+TGG 0.556433 4_1:-42276046 Msa0548340:CDS
CTCAGTTCAGAAGAGCCAAA+GGG 0.557986 4_1:-42276212 Msa0548340:CDS
GATCATGAATAATTTCTATG+AGG 0.559240 4_1:-42276491 Msa0548340:CDS
GCAGACAAACTGCAATTGAT+GGG 0.560859 4_1:-42276090 Msa0548340:CDS
GGGAATGGTGGATGAAGCGT+TGG 0.562828 4_1:-42274395 Msa0548340:CDS
AGATCGGTTTGAAAGGTGTG+TGG 0.563087 4_1:+42278564 None:intergenic
AGAAGGTGGAGATTTGGTGT+CGG 0.566339 4_1:+42278590 None:intergenic
CATGAGATGGTGGCAGTAAG+TGG 0.567653 4_1:-42276033 Msa0548340:CDS
AATTGATAGAGCGTATGAGC+AGG 0.569133 4_1:-42274123 Msa0548340:CDS
AGATGGTGGCAGTAAGTGGT+GGG 0.569143 4_1:-42276029 Msa0548340:CDS
TGTTGAAAGAGGCATCGGTT+CGG 0.569819 4_1:-42273955 Msa0548340:three_prime_UTR
CTTCATGCTGCTCCTGCTCA+CGG 0.570131 4_1:+42274098 None:intergenic
CATGTTTACAGGTCCTTGAG+AGG 0.570970 4_1:-42276519 Msa0548340:intron
TTGAGTTCGGGAGTCTGGCA+CGG 0.571664 4_1:+42274777 None:intergenic
AGCGTTCTTGTATTGAGAAG+TGG 0.572077 4_1:-42275143 Msa0548340:CDS
GCTCAAAACGGCACGGACAG+AGG 0.572383 4_1:-42274163 Msa0548340:CDS
AGTAAGTGGTGGGGATCCAG+GGG 0.572444 4_1:-42276019 Msa0548340:CDS
TCCCTTATCTCTTCAAACAA+AGG 0.573213 4_1:+42278381 None:intergenic
TCTCTGGTCTTCAGGACCAC+CGG 0.574184 4_1:+42274900 None:intergenic
TGACATATCTTCATACAACT+TGG 0.576837 4_1:+42276170 None:intergenic
AGGATCCATCATCAATTCCA+AGG 0.577421 4_1:+42275816 None:intergenic
ATGTTTACAGGTCCTTGAGA+GGG 0.582183 4_1:-42276518 Msa0548340:intron
GAAGACCAGAGATCAGCTGC+CGG 0.583019 4_1:-42274889 Msa0548340:CDS
TCAAGGTTAATGACCAAAGG+TGG 0.584812 4_1:+42274031 None:intergenic
TTCAGGAGCGATATCACCAC+TGG 0.585502 4_1:-42274566 Msa0548340:CDS
ACGAATAACTTGGTGCAGGA+AGG 0.585608 4_1:+42273913 None:intergenic
TAAAATCACTAGGAATAGGA+GGG 0.588591 4_1:+42275851 None:intergenic
TGTGCTGAAAAGGGGAAGCA+TGG 0.589167 4_1:-42274662 Msa0548340:CDS
TTATAAGTTATAACCATGGA+AGG 0.592122 4_1:-42278519 Msa0548340:exon
AATCTTACTTCGCTCAGCTG+GGG 0.595667 4_1:+42274948 None:intergenic
TCCATATATGAGAGTAACAA+AGG 0.598454 4_1:-42274724 Msa0548340:CDS
AAACAAGGGAAAAGCAGTGA+GGG 0.602719 4_1:-42274464 Msa0548340:CDS
CATCGGTTCGGAAGAAAAGG+TGG 0.605728 4_1:-42273943 Msa0548340:three_prime_UTR
AAAATCACTAGGAATAGGAG+GGG 0.606405 4_1:+42275852 None:intergenic
ACTCGCTTTGCATGAGATGG+TGG 0.606609 4_1:-42276043 Msa0548340:CDS
TGCTGAGTGAGGGTACCCAA+AGG 0.607211 4_1:-42274537 Msa0548340:CDS
AGAGGAGACCAACAAGGAGA+GGG 0.607714 4_1:+42274800 None:intergenic
TTGATTATAAGTTATAACCA+TGG 0.609879 4_1:-42278523 Msa0548340:exon
GAACAATGGTGTGAAGCCAA+TGG 0.610641 4_1:-42275030 Msa0548340:CDS
GAGAGGAGACCAACAAGGAG+AGG 0.611374 4_1:+42274799 None:intergenic
ACAAAGGTGAACTAAAACCG+CGG 0.611799 4_1:+42274252 None:intergenic
ACAAACGAATAACTTGGTGC+AGG 0.612509 4_1:+42273909 None:intergenic
GCAAATAGAAAACCTAGTCA+AGG 0.613079 4_1:-42275947 Msa0548340:CDS
GTTGGGTGTGAGAACAGTAC+TGG 0.615065 4_1:+42275074 None:intergenic
TGTCCTGTTGAAACAATGAC+AGG 0.617108 4_1:+42275796 None:intergenic
AAGGTGTGTGGTTTAGAAGG+TGG 0.621869 4_1:+42278576 None:intergenic
ATTTCTATGAGGTGACAGCT+CGG 0.624398 4_1:-42276480 Msa0548340:CDS
ATATCAAGGTTAATGACCAA+AGG 0.628958 4_1:+42274028 None:intergenic
GAGATGGTGGCAGTAAGTGG+TGG 0.629382 4_1:-42276030 Msa0548340:CDS
ATTGAGAAGTGGTTGCAAGA+CGG 0.630106 4_1:-42275132 Msa0548340:CDS
ATCCAAAAGCTCACATCCGG+TGG 0.631621 4_1:-42274916 Msa0548340:CDS
CTGAGTGAGGGTACCCAAAG+GGG 0.636025 4_1:-42274535 Msa0548340:CDS
ATAGTTCATGTGCTGAAAAG+GGG 0.637932 4_1:-42274670 Msa0548340:CDS
CTGGTGACACTGCTGAGTGA+GGG 0.639920 4_1:-42274547 Msa0548340:CDS
AGATCGACAGTATATAGCAC+AGG 0.640908 4_1:-42274224 Msa0548340:CDS
CAGCTTCAGCAATAGCTACA+CGG 0.643002 4_1:+42274830 None:intergenic
ATTGCTGACAGAACCTAGCG+GGG 0.645182 4_1:-42274416 Msa0548340:CDS
ACTGGTGACACTGCTGAGTG+AGG 0.651330 4_1:-42274548 Msa0548340:CDS
TTCGGGAGTCTGGCACGGAG+AGG 0.652328 4_1:+42274782 None:intergenic
GGAATTGGCTCAAAACGGCA+CGG 0.652671 4_1:-42274170 Msa0548340:CDS
GAACAAAGAGAATGCAGCCG+CGG 0.660054 4_1:-42274269 Msa0548340:CDS
GCACGGAGAGGAGACCAACA+AGG 0.663191 4_1:+42274794 None:intergenic
TACGAAGCCTGATAGAACAA+TGG 0.663686 4_1:-42275044 Msa0548340:CDS
AGCACAGGCACAAGAGCTAG+GGG 0.668550 4_1:-42274209 Msa0548340:CDS
ACTGTCGATCTCCAGAACAA+AGG 0.679279 4_1:+42274236 None:intergenic
AATATTGCAACTTAGCACGA+AGG 0.688983 4_1:-42278419 Msa0548340:CDS
TCACTCAGCAGTGTCACCAG+TGG 0.691086 4_1:+42274550 None:intergenic
ATCGGACATTTAAAATCACT+AGG 0.691184 4_1:+42275841 None:intergenic
GATGGTGGCAGTAAGTGGTG+GGG 0.697446 4_1:-42276028 Msa0548340:CDS
GAAACAAGGGAAAAGCAGTG+AGG 0.704489 4_1:-42274465 Msa0548340:CDS
TTGCTGACAGAACCTAGCGG+GGG 0.734349 4_1:-42274415 Msa0548340:CDS
TTATTGGGAATGGATCCCCA+AGG 0.739408 4_1:-42274291 Msa0548340:CDS
CGATTGCTGACAGAACCTAG+CGG 0.740963 4_1:-42274418 Msa0548340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTGTATAAAAAATTGA+AGG - chr4_1:42277045-42277064 Msa0548340:intron 10.0%
!! TAAAAAAAAATTATTCTGCT+TGG - chr4_1:42274184-42274203 Msa0548340:CDS 15.0%
!!! ATTTTTGATTGAATTTGTAT+TGG - chr4_1:42274353-42274372 Msa0548340:CDS 15.0%
!!! TTTGTAATTAGATTTGTTTA+TGG - chr4_1:42274414-42274433 Msa0548340:CDS 15.0%
!!! TTTTAACAATAGAAATGAAA+GGG + chr4_1:42274820-42274839 None:intergenic 15.0%
!!! TTTTTAACAATAGAAATGAA+AGG + chr4_1:42274821-42274840 None:intergenic 15.0%
!! TTTCATTTCTATTGTTAAAA+AGG - chr4_1:42274820-42274839 Msa0548340:CDS 15.0%
!! AATTATCATGCTATATATTA+TGG - chr4_1:42275097-42275116 Msa0548340:CDS 15.0%
!!! TAAAAAAAAAAACATGGTTT+TGG + chr4_1:42275182-42275201 None:intergenic 15.0%
!! CAAAGTTAAAAAAAAAAACA+TGG + chr4_1:42275188-42275207 None:intergenic 15.0%
!!! CATGTTTTTTTTTTTAACTT+TGG - chr4_1:42275186-42275205 Msa0548340:intron 15.0%
!! TTTACAATATTTGTACTATT+TGG - chr4_1:42275522-42275541 Msa0548340:intron 15.0%
!! ATTAGATACACAATATTAAT+TGG + chr4_1:42275551-42275570 None:intergenic 15.0%
!!! TGTATTTCTTTTTATCTATA+TGG - chr4_1:42275583-42275602 Msa0548340:intron 15.0%
!!! GTATTTCTTTTTATCTATAT+GGG - chr4_1:42275584-42275603 Msa0548340:intron 15.0%
!!! TTTAACTCAATTTTAAGAAT+GGG + chr4_1:42275698-42275717 None:intergenic 15.0%
!! TGTCATATATATATTTATTG+CGG - chr4_1:42275947-42275966 Msa0548340:CDS 15.0%
!! AAAATAAAAAAATTGTAGTG+TGG + chr4_1:42276025-42276044 None:intergenic 15.0%
!! AAGTTTCTGTAATTATTAAA+TGG + chr4_1:42276761-42276780 None:intergenic 15.0%
!!! ATTGATAACTAATAATAGTA+AGG + chr4_1:42276796-42276815 None:intergenic 15.0%
!!! ATTTTAAAATTTCTTCTCTA+TGG - chr4_1:42276922-42276941 Msa0548340:intron 15.0%
!! TATATATTGATGAATTTCTT+TGG - chr4_1:42276997-42277016 Msa0548340:intron 15.0%
!! CATATATAAACAAAACATTT+AGG + chr4_1:42278328-42278347 None:intergenic 15.0%
!!! TTTGTTTTGGTTTTTTAGAT+CGG + chr4_1:42273780-42273799 None:intergenic 20.0%
!!! CTTATAATCAAGTTTTGTTT+TGG + chr4_1:42273793-42273812 None:intergenic 20.0%
!! TTGATTATAAGTTATAACCA+TGG - chr4_1:42273802-42273821 Msa0548340:three_prime_UTR 20.0%
!!! TAATTAGATTTGTTTATGGT+TGG - chr4_1:42274418-42274437 Msa0548340:CDS 20.0%
!! ACAAAAATCCATAATTATGA+AGG + chr4_1:42274453-42274472 None:intergenic 20.0%
!! GTCTTTACTATTAATTAAAG+CGG - chr4_1:42274665-42274684 Msa0548340:CDS 20.0%
!!! TCATTTTACAATTATTATCG+AGG - chr4_1:42274694-42274713 Msa0548340:CDS 20.0%
!!! CATTTTACAATTATTATCGA+GGG - chr4_1:42274695-42274714 Msa0548340:CDS 20.0%
!!! ATTTTACAATTATTATCGAG+GGG - chr4_1:42274696-42274715 Msa0548340:CDS 20.0%
!! TTTAACAATAGAAATGAAAG+GGG + chr4_1:42274819-42274838 None:intergenic 20.0%
!!! TCTATTGTTAAAAAGGATTT+TGG - chr4_1:42274827-42274846 Msa0548340:CDS 20.0%
!! TATATATTATGGATCATGAT+CGG - chr4_1:42275108-42275127 Msa0548340:CDS 20.0%
!!! GTTTAACTCAATTTTAAGAA+TGG + chr4_1:42275699-42275718 None:intergenic 20.0%
!!! AATTTTCTCAATAGATCTAA+AGG - chr4_1:42276699-42276718 Msa0548340:intron 20.0%
!! AATAGATCTAAAGGTTTATT+TGG - chr4_1:42276708-42276727 Msa0548340:intron 20.0%
!! ATATAGAAGATGATTAGAAT+AGG + chr4_1:42278564-42278583 None:intergenic 20.0%
!! TTTGAATATGTGAAAATACT+TGG + chr4_1:42278628-42278647 None:intergenic 20.0%
! TTATAAGTTATAACCATGGA+AGG - chr4_1:42273806-42273825 Msa0548340:three_prime_UTR 25.0%
!!! GGGATTGATTTTTTTATGAT+TGG - chr4_1:42274213-42274232 Msa0548340:CDS 25.0%
! AAGTGAAACCTTCATAATTA+TGG - chr4_1:42274442-42274461 Msa0548340:CDS 25.0%
!! TATGGATTTTTGTGCTAAAT+TGG - chr4_1:42274460-42274479 Msa0548340:CDS 25.0%
!! ATGGATTTTTGTGCTAAATT+GGG - chr4_1:42274461-42274480 Msa0548340:CDS 25.0%
!!! CATTTTGAGAATATATTGCA+TGG - chr4_1:42274484-42274503 Msa0548340:CDS 25.0%
!! TTCTGATTTTTGATCTTGTA+TGG - chr4_1:42274534-42274553 Msa0548340:CDS 25.0%
!! TGGTATTCAATTCAATGTTT+TGG - chr4_1:42274554-42274573 Msa0548340:CDS 25.0%
!! TTTTGGATGTAATCTGTTAA+AGG - chr4_1:42274571-42274590 Msa0548340:CDS 25.0%
!! TTTTACAATTATTATCGAGG+GGG - chr4_1:42274697-42274716 Msa0548340:CDS 25.0%
! TTAACAATAGAAATGAAAGG+GGG + chr4_1:42274818-42274837 None:intergenic 25.0%
! GCATGATAATTAAACATCAA+GGG + chr4_1:42275088-42275107 None:intergenic 25.0%
! AGCATGATAATTAAACATCA+AGG + chr4_1:42275089-42275108 None:intergenic 25.0%
! CAGAACTATCTTAATAACAA+TGG + chr4_1:42275274-42275293 None:intergenic 25.0%
!! CATTGTTATTAAGATAGTTC+TGG - chr4_1:42275272-42275291 Msa0548340:intron 25.0%
! GTTAAAAAGGTAAAATGTAG+AGG - chr4_1:42275324-42275343 Msa0548340:intron 25.0%
!! TACTAAATTTTGCAAAAACC+TGG + chr4_1:42275474-42275493 None:intergenic 25.0%
! AGTTAAACCAATATACTTAG+AGG - chr4_1:42275711-42275730 Msa0548340:intron 25.0%
! GTTAAACCAATATACTTAGA+GGG - chr4_1:42275712-42275731 Msa0548340:intron 25.0%
!!! TTGTTTTGATTCATGTTTAC+AGG - chr4_1:42275795-42275814 Msa0548340:CDS 25.0%
! CATAGAAATTATTCATGATC+CGG + chr4_1:42275834-42275853 None:intergenic 25.0%
! GATCATGAATAATTTCTATG+AGG - chr4_1:42275834-42275853 Msa0548340:CDS 25.0%
! CATATATATATTTATTGCGG+TGG - chr4_1:42275950-42275969 Msa0548340:CDS 25.0%
! GATGTTATTGAAGAAGATAA+AGG - chr4_1:42276348-42276367 Msa0548340:intron 25.0%
!! CATTTAAAATCACTAGGAAT+AGG + chr4_1:42276481-42276500 None:intergenic 25.0%
! ATACTCTCTTATAGACATTA+AGG - chr4_1:42276569-42276588 Msa0548340:intron 25.0%
! TATCATTCTTGACTTCAATT+TGG - chr4_1:42276606-42276625 Msa0548340:intron 25.0%
! ATAATAGTAAGGTGAAAACA+AGG + chr4_1:42276785-42276804 None:intergenic 25.0%
!! CTCTCATTTTACTAACAAAA+AGG - chr4_1:42276867-42276886 Msa0548340:intron 25.0%
! CTATTGAGATTTAATGTAGT+CGG - chr4_1:42276945-42276964 Msa0548340:intron 25.0%
! TTCAGTTATCGATGAAAATA+AGG - chr4_1:42277723-42277742 Msa0548340:intron 25.0%
! GATGAAAATAAGGTTACAAT+TGG - chr4_1:42277733-42277752 Msa0548340:intron 25.0%
! TTCAATTTGTGCATTTATCA+GGG - chr4_1:42277838-42277857 Msa0548340:intron 25.0%
!!! TCTTTAAAATGTGTTGAAAG+AGG - chr4_1:42278359-42278378 Msa0548340:CDS 25.0%
! AAACAAACAAACGAATAACT+TGG + chr4_1:42278425-42278444 None:intergenic 25.0%
!! AATTATACATTTTTCACGTC+AGG + chr4_1:42278521-42278540 None:intergenic 25.0%
! TATTTATAGCTTCTCTTTGT+TGG - chr4_1:42278677-42278696 Msa0548340:five_prime_UTR 25.0%
!!! TTTCGTACACTGAAGTTTTT+TGG + chr4_1:42273673-42273692 None:intergenic 30.0%
!!! GTTTTTTAGATCGGTTTGAA+AGG + chr4_1:42273771-42273790 None:intergenic 30.0%
! TTCCTTTGTTTGAAGAGATA+AGG - chr4_1:42273942-42273961 Msa0548340:three_prime_UTR 30.0%
! TCCTTTGTTTGAAGAGATAA+GGG - chr4_1:42273943-42273962 Msa0548340:three_prime_UTR 30.0%
!!! AACGCTTTTGAAGTATCATT+CGG + chr4_1:42273986-42274005 None:intergenic 30.0%
TGAAGGAAGCAAGATTTATA+TGG - chr4_1:42274060-42274079 Msa0548340:CDS 30.0%
AATTATTCTGCTTGGTTATG+TGG - chr4_1:42274192-42274211 Msa0548340:CDS 30.0%
ATTATTCTGCTTGGTTATGT+GGG - chr4_1:42274193-42274212 Msa0548340:CDS 30.0%
GAATATATTGCATGGTGTTT+AGG - chr4_1:42274492-42274511 Msa0548340:CDS 30.0%
! GTTTAGGAAGTGTATTGAAA+AGG - chr4_1:42274508-42274527 Msa0548340:CDS 30.0%
AATTCTTCTGTCGATATTCA+GGG + chr4_1:42274793-42274812 None:intergenic 30.0%
AAATTCTTCTGTCGATATTC+AGG + chr4_1:42274794-42274813 None:intergenic 30.0%
!! TGTTAAAAAGGATTTTGGTG+AGG - chr4_1:42274832-42274851 Msa0548340:CDS 30.0%
ATATCTTCAGATTTCACATC+TGG + chr4_1:42274923-42274942 None:intergenic 30.0%
AACATCAAGGGTAAAATGTT+TGG + chr4_1:42275076-42275095 None:intergenic 30.0%
! ACTAAACCCTCTTTTATCAA+AGG - chr4_1:42275144-42275163 Msa0548340:CDS 30.0%
TTGGTAAGATTATAGCTGTT+TGG - chr4_1:42275205-42275224 Msa0548340:intron 30.0%
! TTTTGCACAGGAAGTTAAAA+AGG - chr4_1:42275311-42275330 Msa0548340:intron 30.0%
TTTAAGAATGGGATTCACAA+GGG + chr4_1:42275687-42275706 None:intergenic 30.0%
!! TTTTAAGAATGGGATTCACA+AGG + chr4_1:42275688-42275707 None:intergenic 30.0%
AACAACTGAATCAACATCTA+AGG + chr4_1:42275780-42275799 None:intergenic 30.0%
GGATATGTCAAGTTTATCAT+AGG + chr4_1:42275896-42275915 None:intergenic 30.0%
TGACATATCTTCATACAACT+TGG + chr4_1:42276158-42276177 None:intergenic 30.0%
! TTTTAGTATCATCCTTGACT+AGG + chr4_1:42276393-42276412 None:intergenic 30.0%
GATGATACTAAAACAGCAAA+AGG - chr4_1:42276400-42276419 Msa0548340:intron 30.0%
TAAAATCACTAGGAATAGGA+GGG + chr4_1:42276477-42276496 None:intergenic 30.0%
TTAAAATCACTAGGAATAGG+AGG + chr4_1:42276478-42276497 None:intergenic 30.0%
! ATCGGACATTTAAAATCACT+AGG + chr4_1:42276487-42276506 None:intergenic 30.0%
! TTTTAAATGTCCGATTTCCT+TGG - chr4_1:42276492-42276511 Msa0548340:CDS 30.0%
ATCATCAATTCCAAGGAAAT+CGG + chr4_1:42276505-42276524 None:intergenic 30.0%
CTCTTATAGACATTAAGGTT+TGG - chr4_1:42276574-42276593 Msa0548340:intron 30.0%
AGAAAATTGTGTAAAGAGCA+TGG + chr4_1:42276687-42276706 None:intergenic 30.0%
! TCAATGATTTGTCCCAAAAA+TGG - chr4_1:42276811-42276830 Msa0548340:intron 30.0%
!! GAAAAGGCTATACCATTTTT+GGG + chr4_1:42276826-42276845 None:intergenic 30.0%
! TGAAAAGGCTATACCATTTT+TGG + chr4_1:42276827-42276846 None:intergenic 30.0%
! ATAGCCTTTTCAATATTTCC+TGG - chr4_1:42276835-42276854 Msa0548340:intron 30.0%
TCATCCAGGAAATATTGAAA+AGG + chr4_1:42276842-42276861 None:intergenic 30.0%
!!! TTTCTTTGGAACACAAGTTT+TGG - chr4_1:42277011-42277030 Msa0548340:intron 30.0%
AAAATGTCAATAATGCACAC+TGG + chr4_1:42277084-42277103 None:intergenic 30.0%
TCCATATATGAGAGTAACAA+AGG - chr4_1:42277601-42277620 Msa0548340:intron 30.0%
TCCTTTGTTACTCTCATATA+TGG + chr4_1:42277605-42277624 None:intergenic 30.0%
CTTCAATTTGTGCATTTATC+AGG - chr4_1:42277837-42277856 Msa0548340:intron 30.0%
ATATCAAGGTTAATGACCAA+AGG + chr4_1:42278300-42278319 None:intergenic 30.0%
ACATTTAGGTGTCAATATCA+AGG + chr4_1:42278314-42278333 None:intergenic 30.0%
! ATGCAAAATGCCATTTGAAA+TGG - chr4_1:42278465-42278484 Msa0548340:CDS 30.0%
! TGCAAAATGCCATTTGAAAT+GGG - chr4_1:42278466-42278485 Msa0548340:CDS 30.0%
! TGAAGAGATGTTTTGTCTAT+TGG - chr4_1:42278588-42278607 Msa0548340:five_prime_UTR 30.0%
TTCGTTGACAAAAACATGAC+CGG - chr4_1:42273700-42273719 Msa0548340:three_prime_UTR 35.0%
!!! GTTTACTTTTTCACCTTCCA+TGG + chr4_1:42273822-42273841 None:intergenic 35.0%
AGTAAACGTGGTGATTGATT+TGG - chr4_1:42273835-42273854 Msa0548340:three_prime_UTR 35.0%
CAATATTGCTTCTTCACCAT+AGG + chr4_1:42273893-42273912 None:intergenic 35.0%
AATATTGCAACTTAGCACGA+AGG - chr4_1:42273906-42273925 Msa0548340:three_prime_UTR 35.0%
TCCCTTATCTCTTCAAACAA+AGG + chr4_1:42273947-42273966 None:intergenic 35.0%
! GAATGATACTTCAAAAGCGT+TGG - chr4_1:42273985-42274004 Msa0548340:three_prime_UTR 35.0%
! CTATAATTTTCCGAGATCTC+CGG - chr4_1:42274601-42274620 Msa0548340:CDS 35.0%
GATTTGAATTCTATTCCGTG+TGG - chr4_1:42274719-42274738 Msa0548340:CDS 35.0%
TCAGCTTAAAGACCATATTG+TGG - chr4_1:42275005-42275024 Msa0548340:CDS 35.0%
CAGCTTAAAGACCATATTGT+GGG - chr4_1:42275006-42275025 Msa0548340:CDS 35.0%
TAGTACCAACAGCTTCAAAA+GGG + chr4_1:42275036-42275055 None:intergenic 35.0%
ATAGTACCAACAGCTTCAAA+AGG + chr4_1:42275037-42275056 None:intergenic 35.0%
! AGGGTACCTTTGATAAAAGA+GGG + chr4_1:42275153-42275172 None:intergenic 35.0%
! TAGGGTACCTTTGATAAAAG+AGG + chr4_1:42275154-42275173 None:intergenic 35.0%
!!! TCTTTTATCAAAGGTACCCT+AGG - chr4_1:42275153-42275172 Msa0548340:CDS 35.0%
!!! AACATGGTTTTGGAATCCTA+GGG + chr4_1:42275172-42275191 None:intergenic 35.0%
!!! AAACATGGTTTTGGAATCCT+AGG + chr4_1:42275173-42275192 None:intergenic 35.0%
ATAGCAATGCTTGAAACACT+GGG + chr4_1:42275379-42275398 None:intergenic 35.0%
TATAGCAATGCTTGAAACAC+TGG + chr4_1:42275380-42275399 None:intergenic 35.0%
! TTTTTACAGTACGTTGTCCA+TGG - chr4_1:42275400-42275419 Msa0548340:intron 35.0%
!! CATAATAAGTTTTGGCACCA+TGG + chr4_1:42275420-42275439 None:intergenic 35.0%
! CATCGAGGCATAATAAGTTT+TGG + chr4_1:42275428-42275447 None:intergenic 35.0%
TGAAAAGGTCAAACTAATCC+AGG - chr4_1:42275453-42275472 Msa0548340:intron 35.0%
CATATGAATGTTCTGACCTT+TGG - chr4_1:42275643-42275662 Msa0548340:intron 35.0%
AATGCTCCCTCTAAGTATAT+TGG + chr4_1:42275721-42275740 None:intergenic 35.0%
! TACCTGCTCTTTAACTTCAT+CGG + chr4_1:42275917-42275936 None:intergenic 35.0%
GCAAATAGAAAACCTAGTCA+AGG - chr4_1:42276378-42276397 Msa0548340:intron 35.0%
! GGTGTTTCTTCAGGATTTTA+CGG - chr4_1:42276421-42276440 Msa0548340:CDS 35.0%
AAAATCACTAGGAATAGGAG+GGG + chr4_1:42276476-42276495 None:intergenic 35.0%
GATTTCCTTGGAATTGATGA+TGG - chr4_1:42276504-42276523 Msa0548340:CDS 35.0%
AAATGAGAGAATGATCATCC+AGG + chr4_1:42276856-42276875 None:intergenic 35.0%
!! AAAGGAAGCATTGTTTCTTC+CGG - chr4_1:42277619-42277638 Msa0548340:intron 35.0%
CATAGTTCATGTGCTGAAAA+GGG - chr4_1:42277654-42277673 Msa0548340:intron 35.0%
ATAGTTCATGTGCTGAAAAG+GGG - chr4_1:42277655-42277674 Msa0548340:intron 35.0%
! AAGGTTACAATTGGTTCTTC+AGG - chr4_1:42277742-42277761 Msa0548340:intron 35.0%
TGCATTTATCAGGGAAACAA+GGG - chr4_1:42277847-42277866 Msa0548340:intron 35.0%
ACTAGCCAAAATTGCCAAAA+TGG + chr4_1:42277956-42277975 None:intergenic 35.0%
CCAATAAACTCTACCAAAAC+CGG + chr4_1:42278021-42278040 None:intergenic 35.0%
!! CGGTTTTGGTAGAGTTTATT+GGG - chr4_1:42278019-42278038 Msa0548340:intron 35.0%
TTGGTAGAGTTTATTGGGAA+TGG - chr4_1:42278024-42278043 Msa0548340:intron 35.0%
!!! GTTTTAGTTCACCTTTGTTC+TGG - chr4_1:42278078-42278097 Msa0548340:intron 35.0%
! TTTTGAGCCAATTCCAACAA+TGG + chr4_1:42278150-42278169 None:intergenic 35.0%
! TTGTTGGAATTGGCTCAAAA+CGG - chr4_1:42278150-42278169 Msa0548340:intron 35.0%
! AAATGTGTTGAAAGAGGCAT+CGG - chr4_1:42278365-42278384 Msa0548340:CDS 35.0%
TGGTTTAGAAGGTGGAGATT+TGG + chr4_1:42273744-42273763 None:intergenic 40.0%
! TGAAAGGTGTGTGGTTTAGA+AGG + chr4_1:42273755-42273774 None:intergenic 40.0%
GGAAGGTGAAAAAGTAAACG+TGG - chr4_1:42273823-42273842 Msa0548340:three_prime_UTR 40.0%
AGATGCTCTTGATTCAGCTA+AGG - chr4_1:42274018-42274037 Msa0548340:CDS 40.0%
GCTAAGGAACTTCTCAGATT+TGG - chr4_1:42274034-42274053 Msa0548340:CDS 40.0%
! CTTCTCAGATTTGGTTGTGA+AGG - chr4_1:42274043-42274062 Msa0548340:CDS 40.0%
CGGAGATCTCGGAAAATTAT+AGG + chr4_1:42274603-42274622 None:intergenic 40.0%
CGAAGAAGACAAATCGAGTA+CGG + chr4_1:42274637-42274656 None:intergenic 40.0%
! CGTACTCGATTTGTCTTCTT+CGG - chr4_1:42274635-42274654 Msa0548340:CDS 40.0%
! GTACTCGATTTGTCTTCTTC+GGG - chr4_1:42274636-42274655 Msa0548340:CDS 40.0%
! TACTCGATTTGTCTTCTTCG+GGG - chr4_1:42274637-42274656 Msa0548340:CDS 40.0%
AATTCTATTCCGTGTGGTAG+AGG - chr4_1:42274725-42274744 Msa0548340:CDS 40.0%
ATCTGATAACCTCTACCACA+CGG + chr4_1:42274737-42274756 None:intergenic 40.0%
ACGAACATTTGAGCGACAAA+AGG - chr4_1:42274956-42274975 Msa0548340:CDS 40.0%
AAAAGGGAATGCCCACAATA+TGG + chr4_1:42275020-42275039 None:intergenic 40.0%
! GTTTGGTGATTCTGTCACAA+TGG - chr4_1:42275222-42275241 Msa0548340:intron 40.0%
TAACAATGGTCCAAAGCAGT+TGG + chr4_1:42275260-42275279 None:intergenic 40.0%
!! TAGTTCTGGTTTCTGTTGTG+TGG - chr4_1:42275286-42275305 Msa0548340:intron 40.0%
!! AGTTCTGGTTTCTGTTGTGT+GGG - chr4_1:42275287-42275306 Msa0548340:intron 40.0%
GAAACACTGGGCACAATTAA+AGG + chr4_1:42275367-42275386 None:intergenic 40.0%
! TGCCTCGATGAACTTTGAAA+AGG - chr4_1:42275438-42275457 Msa0548340:intron 40.0%
! GACCTTTTCAAAGTTCATCG+AGG + chr4_1:42275443-42275462 None:intergenic 40.0%
ATGTAACTGTAAGCATGGCA+AGG + chr4_1:42275612-42275631 None:intergenic 40.0%
TGCCATGCTTACAGTTACAT+AGG - chr4_1:42275612-42275631 Msa0548340:intron 40.0%
CTCCTATGTAACTGTAAGCA+TGG + chr4_1:42275617-42275636 None:intergenic 40.0%
CATGCTTACAGTTACATAGG+AGG - chr4_1:42275615-42275634 Msa0548340:intron 40.0%
ATGTTTACAGGTCCTTGAGA+GGG - chr4_1:42275807-42275826 Msa0548340:CDS 40.0%
ATTTCTATGAGGTGACAGCT+CGG - chr4_1:42275845-42275864 Msa0548340:CDS 40.0%
ATCCGATGAAGTTAAAGAGC+AGG - chr4_1:42275912-42275931 Msa0548340:CDS 40.0%
! GTGTAACTCGCTATCGTTTT+AGG - chr4_1:42276075-42276094 Msa0548340:CDS 40.0%
!!! GCTATCGTTTTAGGTTGAAC+TGG - chr4_1:42276084-42276103 Msa0548340:CDS 40.0%
TCTTCATACAACTTGGCATC+TGG + chr4_1:42276151-42276170 None:intergenic 40.0%
AGCAGACAAACTGCAATTGA+TGG - chr4_1:42276234-42276253 Msa0548340:intron 40.0%
GCAGACAAACTGCAATTGAT+GGG - chr4_1:42276235-42276254 Msa0548340:intron 40.0%
!! ACAGCAAAAGGTGTTTCTTC+AGG - chr4_1:42276412-42276431 Msa0548340:intron 40.0%
! TCTTCAGGATTTTACGGACT+AGG - chr4_1:42276427-42276446 Msa0548340:CDS 40.0%
!! CTTCAGGATTTTACGGACTA+GGG - chr4_1:42276428-42276447 Msa0548340:CDS 40.0%
!!! TTCAGGATTTTACGGACTAG+GGG - chr4_1:42276429-42276448 Msa0548340:CDS 40.0%
AGGATCCATCATCAATTCCA+AGG + chr4_1:42276512-42276531 None:intergenic 40.0%
GATCCTGTCATTGTTTCAAC+AGG - chr4_1:42276526-42276545 Msa0548340:intron 40.0%
TGTCCTGTTGAAACAATGAC+AGG + chr4_1:42276532-42276551 None:intergenic 40.0%
TGTCATTGTTTCAACAGGAC+AGG - chr4_1:42276531-42276550 Msa0548340:intron 40.0%
GAGCGTAAGATATCTGCAAA+CGG - chr4_1:42276659-42276678 Msa0548340:intron 40.0%
AGCGTTCTTGTATTGAGAAG+TGG - chr4_1:42277182-42277201 Msa0548340:intron 40.0%
ATTGAGAAGTGGTTGCAAGA+CGG - chr4_1:42277193-42277212 Msa0548340:intron 40.0%
! TGAGACTCTGCTGTGTTTTT+GGG + chr4_1:42277231-42277250 None:intergenic 40.0%
AGGCTTCGTAAGACATAGTT+GGG + chr4_1:42277271-42277290 None:intergenic 40.0%
TACGAAGCCTGATAGAACAA+TGG - chr4_1:42277281-42277300 Msa0548340:intron 40.0%
CTTCACACCATTGTTCTATC+AGG + chr4_1:42277291-42277310 None:intergenic 40.0%
CTTATCCAAAAGCTCACATC+CGG - chr4_1:42277406-42277425 Msa0548340:intron 40.0%
GCATAGTTCATGTGCTGAAA+AGG - chr4_1:42277653-42277672 Msa0548340:intron 40.0%
AGCATCTTTCTTACCCCTTT+GGG + chr4_1:42277806-42277825 None:intergenic 40.0%
GTGCATTTATCAGGGAAACA+AGG - chr4_1:42277846-42277865 Msa0548340:intron 40.0%
AAACAAGGGAAAAGCAGTGA+GGG - chr4_1:42277861-42277880 Msa0548340:intron 40.0%
!! GTTGGCCATTTTGGCAATTT+TGG - chr4_1:42277948-42277967 Msa0548340:intron 40.0%
!!! ATTTTGGCTAGTCATCCTGA+AGG - chr4_1:42277964-42277983 Msa0548340:intron 40.0%
!! TTTTGGCTAGTCATCCTGAA+GGG - chr4_1:42277965-42277984 Msa0548340:intron 40.0%
!! CCGGTTTTGGTAGAGTTTAT+TGG - chr4_1:42278018-42278037 Msa0548340:intron 40.0%
TGCATTCTCTTTGTTCCTTG+GGG + chr4_1:42278052-42278071 None:intergenic 40.0%
CTGCATTCTCTTTGTTCCTT+GGG + chr4_1:42278053-42278072 None:intergenic 40.0%
ACAAAGGTGAACTAAAACCG+CGG + chr4_1:42278076-42278095 None:intergenic 40.0%
AATTGATAGAGCGTATGAGC+AGG - chr4_1:42278202-42278221 Msa0548340:intron 40.0%
TCAAGGTTAATGACCAAAGG+TGG + chr4_1:42278297-42278316 None:intergenic 40.0%
!! ACAAACGAATAACTTGGTGC+AGG + chr4_1:42278419-42278438 None:intergenic 40.0%
CGATCTGTTCCCATTTCAAA+TGG + chr4_1:42278478-42278497 None:intergenic 40.0%
!! AGATTTGGTGTCGGAGATTG+TGG + chr4_1:42273729-42273748 None:intergenic 45.0%
!! AGAAGGTGGAGATTTGGTGT+CGG + chr4_1:42273738-42273757 None:intergenic 45.0%
AAGGTGTGTGGTTTAGAAGG+TGG + chr4_1:42273752-42273771 None:intergenic 45.0%
!! AGATCGGTTTGAAAGGTGTG+TGG + chr4_1:42273764-42273783 None:intergenic 45.0%
CATCTCAGACTTCAGACCTA+TGG - chr4_1:42273874-42273893 Msa0548340:three_prime_UTR 45.0%
ACACAATTTGCCGGAGATCT+CGG + chr4_1:42274614-42274633 None:intergenic 45.0%
GTCGATATTCAGGGTTCATG+AGG + chr4_1:42274784-42274803 None:intergenic 45.0%
! CAGATTTCACATCTGGAGTG+TGG + chr4_1:42274916-42274935 None:intergenic 45.0%
!!! GCATTCCCTTTTGAAGCTGT+TGG - chr4_1:42275028-42275047 Msa0548340:CDS 45.0%
!! GTTCTGGTTTCTGTTGTGTG+GGG - chr4_1:42275288-42275307 Msa0548340:intron 45.0%
TTTGAGCTGTGAGCAACCAA+AGG + chr4_1:42275662-42275681 None:intergenic 45.0%
CATGTTTACAGGTCCTTGAG+AGG - chr4_1:42275806-42275825 Msa0548340:CDS 45.0%
ACTCAGTTCAGAAGAGCCAA+AGG - chr4_1:42276112-42276131 Msa0548340:CDS 45.0%
CTCAGTTCAGAAGAGCCAAA+GGG - chr4_1:42276113-42276132 Msa0548340:CDS 45.0%
TGGTTCATCAACTCTCCCTT+TGG + chr4_1:42276131-42276150 None:intergenic 45.0%
! GCTAATCGACTTAGAACAGC+TGG + chr4_1:42276217-42276236 None:intergenic 45.0%
ATCACTCGCTTTGCATGAGA+TGG - chr4_1:42276279-42276298 Msa0548340:intron 45.0%
! GTGAGACTCTGCTGTGTTTT+TGG + chr4_1:42277232-42277251 None:intergenic 45.0%
CAGGCTTCGTAAGACATAGT+TGG + chr4_1:42277272-42277291 None:intergenic 45.0%
GAACAATGGTGTGAAGCCAA+TGG - chr4_1:42277295-42277314 Msa0548340:intron 45.0%
!! TTTTGGTGGCTCTATGCCAT+TGG + chr4_1:42277314-42277333 None:intergenic 45.0%
!! TTACTTGGCTCAGAAGTGCT+GGG + chr4_1:42277340-42277359 None:intergenic 45.0%
! TTTACTTGGCTCAGAAGTGC+TGG + chr4_1:42277341-42277360 None:intergenic 45.0%
!! CAGGCTGATGCTGATTTACT+TGG + chr4_1:42277355-42277374 None:intergenic 45.0%
AATCTTACTTCGCTCAGCTG+GGG + chr4_1:42277380-42277399 None:intergenic 45.0%
CAATCTTACTTCGCTCAGCT+GGG + chr4_1:42277381-42277400 None:intergenic 45.0%
TCAATCTTACTTCGCTCAGC+TGG + chr4_1:42277382-42277401 None:intergenic 45.0%
! CATTGCGTTTTGCAAGAAGC+CGG + chr4_1:42277468-42277487 None:intergenic 45.0%
CAGCTTCAGCAATAGCTACA+CGG + chr4_1:42277498-42277517 None:intergenic 45.0%
TAACAGCGTGCTCTTGAGTT+CGG + chr4_1:42277564-42277583 None:intergenic 45.0%
TTCAGCACATGAACTATGCC+TGG + chr4_1:42277652-42277671 None:intergenic 45.0%
CAGCATCTTTCTTACCCCTT+TGG + chr4_1:42277807-42277826 None:intergenic 45.0%
GAAACAAGGGAAAAGCAGTG+AGG - chr4_1:42277860-42277879 Msa0548340:intron 45.0%
TTATTGGGAATGGATCCCCA+AGG - chr4_1:42278034-42278053 Msa0548340:intron 45.0%
GCTGCATTCTCTTTGTTCCT+TGG + chr4_1:42278054-42278073 None:intergenic 45.0%
GATGGCTCCATTGTTGGAAT+TGG - chr4_1:42278140-42278159 Msa0548340:intron 45.0%
CACGGACAGAGGAAAAAGAA+AGG - chr4_1:42278173-42278192 Msa0548340:intron 45.0%
CGATGATATCCATCCACCTT+TGG - chr4_1:42278281-42278300 Msa0548340:CDS 45.0%
GGTTAATGACCAAAGGTGGA+TGG + chr4_1:42278293-42278312 None:intergenic 45.0%
!! TGTTGAAAGAGGCATCGGTT+CGG - chr4_1:42278370-42278389 Msa0548340:CDS 45.0%
!! ACGAATAACTTGGTGCAGGA+AGG + chr4_1:42278415-42278434 None:intergenic 45.0%
GTGTCGGAGATTGTGGTTTC+CGG + chr4_1:42273722-42273741 None:intergenic 50.0%
CGAGTACGGACACAATTTGC+CGG + chr4_1:42274623-42274642 None:intergenic 50.0%
CGATTTGTCTTCTTCGGGGA+AGG - chr4_1:42274641-42274660 Msa0548340:CDS 50.0%
CTGTCACAATGGTCCACATG+TGG - chr4_1:42275233-42275252 Msa0548340:intron 50.0%
CAAAGCAGTTGGACCACATG+TGG + chr4_1:42275249-42275268 None:intergenic 50.0%
CACATGTGGTCCAACTGCTT+TGG - chr4_1:42275247-42275266 Msa0548340:intron 50.0%
! TGTTGTGTGGGGTTTTGCAC+AGG - chr4_1:42275299-42275318 Msa0548340:intron 50.0%
AGCTCGGTTGGAACAATCAC+TGG - chr4_1:42275861-42275880 Msa0548340:CDS 50.0%
ACTCGCTTTGCATGAGATGG+TGG - chr4_1:42276282-42276301 Msa0548340:intron 50.0%
! CATGAGATGGTGGCAGTAAG+TGG - chr4_1:42276292-42276311 Msa0548340:intron 50.0%
! AGATGGTGGCAGTAAGTGGT+GGG - chr4_1:42276296-42276315 Msa0548340:intron 50.0%
GTTGGGTGTGAGAACAGTAC+TGG + chr4_1:42277254-42277273 None:intergenic 50.0%
!!! TCAGAAGTGCTGGGTCGTTT+TGG + chr4_1:42277331-42277350 None:intergenic 50.0%
ATCCAAAAGCTCACATCCGG+TGG - chr4_1:42277409-42277428 Msa0548340:intron 50.0%
CGTGTAGCTATTGCTGAAGC+TGG - chr4_1:42277496-42277515 Msa0548340:intron 50.0%
AGAGGAGACCAACAAGGAGA+GGG + chr4_1:42277528-42277547 None:intergenic 50.0%
AACAGCGTGCTCTTGAGTTC+GGG + chr4_1:42277563-42277582 None:intergenic 50.0%
AACTATGCCTGGAACTGCTC+CGG + chr4_1:42277641-42277660 None:intergenic 50.0%
TGTGCTGAAAAGGGGAAGCA+TGG - chr4_1:42277663-42277682 Msa0548340:intron 50.0%
! AAAGGGGAAGCATGGAAGCT+CGG - chr4_1:42277671-42277690 Msa0548340:intron 50.0%
TTCAGGAGCGATATCACCAC+TGG - chr4_1:42277759-42277778 Msa0548340:intron 50.0%
CGATTGCTGACAGAACCTAG+CGG - chr4_1:42277907-42277926 Msa0548340:intron 50.0%
GATTGCTGACAGAACCTAGC+GGG - chr4_1:42277908-42277927 Msa0548340:intron 50.0%
ATTGCTGACAGAACCTAGCG+GGG - chr4_1:42277909-42277928 Msa0548340:intron 50.0%
!!! GGATGAAGCGTTGGCCATTT+TGG - chr4_1:42277939-42277958 Msa0548340:intron 50.0%
GAACAAAGAGAATGCAGCCG+CGG - chr4_1:42278056-42278075 Msa0548340:intron 50.0%
ATAGCACAGGCACAAGAGCT+AGG - chr4_1:42278114-42278133 Msa0548340:intron 50.0%
TAGCACAGGCACAAGAGCTA+GGG - chr4_1:42278115-42278134 Msa0548340:intron 50.0%
! GGAATTGGCTCAAAACGGCA+CGG - chr4_1:42278155-42278174 Msa0548340:intron 50.0%
!! AGGCATCGGTTCGGAAGAAA+AGG - chr4_1:42278379-42278398 Msa0548340:CDS 50.0%
!! CATCGGTTCGGAAGAAAAGG+TGG - chr4_1:42278382-42278401 Msa0548340:CDS 50.0%
! GGGTTCATGAGGTGTCTGCT+AGG + chr4_1:42274773-42274792 None:intergenic 55.0%
TACAGGTCCTTGAGAGGGAC+CGG - chr4_1:42275812-42275831 Msa0548340:CDS 55.0%
TCATGATCCGGTCCCTCTCA+AGG + chr4_1:42275822-42275841 None:intergenic 55.0%
CTATGAGGTGACAGCTCGGT+TGG - chr4_1:42275849-42275868 Msa0548340:CDS 55.0%
! GAGATGGTGGCAGTAAGTGG+TGG - chr4_1:42276295-42276314 Msa0548340:intron 55.0%
! GATGGTGGCAGTAAGTGGTG+GGG - chr4_1:42276297-42276316 Msa0548340:intron 55.0%
! CAGTAAGTGGTGGGGATCCA+GGG - chr4_1:42276305-42276324 Msa0548340:intron 55.0%
! AGTAAGTGGTGGGGATCCAG+GGG - chr4_1:42276306-42276325 Msa0548340:intron 55.0%
AAGTGGTTGCAAGACGGCCA+CGG - chr4_1:42277199-42277218 Msa0548340:intron 55.0%
!!! GAAGTGCTGGGTCGTTTTGG+TGG + chr4_1:42277328-42277347 None:intergenic 55.0%
! GACCACCGGATGTGAGCTTT+TGG + chr4_1:42277414-42277433 None:intergenic 55.0%
! TCTCTGGTCTTCAGGACCAC+CGG + chr4_1:42277428-42277447 None:intergenic 55.0%
! GCAGCTGATCTCTGGTCTTC+AGG + chr4_1:42277436-42277455 None:intergenic 55.0%
GAAGACCAGAGATCAGCTGC+CGG - chr4_1:42277436-42277455 Msa0548340:intron 55.0%
TGCAAGAAGCCGGATCTCTC+CGG + chr4_1:42277458-42277477 None:intergenic 55.0%
GGTGCAATCCCTCTCCTTGT+TGG - chr4_1:42277517-42277536 Msa0548340:intron 55.0%
GAGAGGAGACCAACAAGGAG+AGG + chr4_1:42277529-42277548 None:intergenic 55.0%
TTGAGTTCGGGAGTCTGGCA+CGG + chr4_1:42277551-42277570 None:intergenic 55.0%
TGCTCTTGAGTTCGGGAGTC+TGG + chr4_1:42277556-42277575 None:intergenic 55.0%
GTTTCTTCCGGAGCAGTTCC+AGG - chr4_1:42277631-42277650 Msa0548340:intron 55.0%
! AAGGGGAAGCATGGAAGCTC+GGG - chr4_1:42277672-42277691 Msa0548340:intron 55.0%
TCACTCAGCAGTGTCACCAG+TGG + chr4_1:42277778-42277797 None:intergenic 55.0%
ACTGGTGACACTGCTGAGTG+AGG - chr4_1:42277777-42277796 Msa0548340:intron 55.0%
CTGGTGACACTGCTGAGTGA+GGG - chr4_1:42277778-42277797 Msa0548340:intron 55.0%
!! TGCTGAGTGAGGGTACCCAA+AGG - chr4_1:42277788-42277807 Msa0548340:intron 55.0%
!! GCTGAGTGAGGGTACCCAAA+GGG - chr4_1:42277789-42277808 Msa0548340:intron 55.0%
!! CTGAGTGAGGGTACCCAAAG+GGG - chr4_1:42277790-42277809 Msa0548340:intron 55.0%
AAGGGAAAAGCAGTGAGGGC+TGG - chr4_1:42277865-42277884 Msa0548340:intron 55.0%
GTCAGCAATCGCATCAGCGT+CGG + chr4_1:42277898-42277917 None:intergenic 55.0%
TTGCTGACAGAACCTAGCGG+GGG - chr4_1:42277910-42277929 Msa0548340:intron 55.0%
!! GGGAATGGTGGATGAAGCGT+TGG - chr4_1:42277930-42277949 Msa0548340:intron 55.0%
CCAATGGCAGCTTTCCCTTC+AGG + chr4_1:42277982-42278001 None:intergenic 55.0%
CCTGAAGGGAAAGCTGCCAT+TGG - chr4_1:42277979-42277998 Msa0548340:intron 55.0%
AGCACAGGCACAAGAGCTAG+GGG - chr4_1:42278116-42278135 Msa0548340:intron 55.0%
! AGGGGTGATGGCTCCATTGT+TGG - chr4_1:42278134-42278153 Msa0548340:intron 55.0%
TATGAGCAGGATCCGTGAGC+AGG - chr4_1:42278215-42278234 Msa0548340:intron 55.0%
CTTCATGCTGCTCCTGCTCA+CGG + chr4_1:42278230-42278249 None:intergenic 55.0%
! GCAGTAAGTGGTGGGGATCC+AGG - chr4_1:42276304-42276323 Msa0548340:intron 60.0%
AGTGGTTGCAAGACGGCCAC+GGG - chr4_1:42277200-42277219 Msa0548340:intron 60.0%
!!! GTGTTTTTGGGCACGTCCCG+TGG + chr4_1:42277219-42277238 None:intergenic 60.0%
TCTCTCCGGCAGCTGATCTC+TGG + chr4_1:42277444-42277463 None:intergenic 60.0%
GATCAGCTGCCGGAGAGATC+CGG - chr4_1:42277446-42277465 Msa0548340:intron 60.0%
GCACGGAGAGGAGACCAACA+AGG + chr4_1:42277534-42277553 None:intergenic 60.0%
GACAGAACCTAGCGGGGGAA+TGG - chr4_1:42277915-42277934 Msa0548340:intron 60.0%
AGAACCTAGCGGGGGAATGG+TGG - chr4_1:42277918-42277937 Msa0548340:intron 60.0%
TCATCCACCATTCCCCCGCT+AGG + chr4_1:42277925-42277944 None:intergenic 60.0%
!! AGCTGCCATTGGTGCTGCAG+AGG - chr4_1:42277990-42278009 Msa0548340:intron 60.0%
CACTGCCTCTGCAGCACCAA+TGG + chr4_1:42277998-42278017 None:intergenic 60.0%
!!! TGCAGAGGCAGTGCCGGTTT+TGG - chr4_1:42278005-42278024 Msa0548340:intron 60.0%
GGCACAAGAGCTAGGGGTGA+TGG - chr4_1:42278122-42278141 Msa0548340:intron 60.0%
GCTCAAAACGGCACGGACAG+AGG - chr4_1:42278162-42278181 Msa0548340:intron 60.0%
ATCTTCTCGATGCGCGCCCC+TGG + chr4_1:42276325-42276344 None:intergenic 65.0%
ACTTCGCTCAGCTGGGGTGC+AGG + chr4_1:42277374-42277393 None:intergenic 65.0%
TTCGGGAGTCTGGCACGGAG+AGG + chr4_1:42277546-42277565 None:intergenic 65.0%
!! TGGTGCTGCAGAGGCAGTGC+CGG - chr4_1:42277999-42278018 Msa0548340:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 42273610 42278737 42273610 ID=Msa0548340;Name=Msa0548340
chr4_1 mRNA 42273610 42278737 42273610 ID=Msa0548340-mRNA-1;Parent=Msa0548340;Name=Msa0548340-mRNA-1;_AED=0.04;_eAED=0.04;_QI=211|1|1|1|1|1|4|408|662
chr4_1 exon 42273610 42275172 42273610 ID=Msa0548340-mRNA-1:exon:10900;Parent=Msa0548340-mRNA-1
chr4_1 exon 42275795 42276250 42275795 ID=Msa0548340-mRNA-1:exon:10899;Parent=Msa0548340-mRNA-1
chr4_1 exon 42276414 42276530 42276414 ID=Msa0548340-mRNA-1:exon:10898;Parent=Msa0548340-mRNA-1
chr4_1 exon 42278266 42278737 42278266 ID=Msa0548340-mRNA-1:exon:10897;Parent=Msa0548340-mRNA-1
chr4_1 five_prime_UTR 42278527 42278737 42278527 ID=Msa0548340-mRNA-1:five_prime_utr;Parent=Msa0548340-mRNA-1
chr4_1 CDS 42278266 42278526 42278266 ID=Msa0548340-mRNA-1:cds;Parent=Msa0548340-mRNA-1
chr4_1 CDS 42276414 42276530 42276414 ID=Msa0548340-mRNA-1:cds;Parent=Msa0548340-mRNA-1
chr4_1 CDS 42275795 42276250 42275795 ID=Msa0548340-mRNA-1:cds;Parent=Msa0548340-mRNA-1
chr4_1 CDS 42274018 42275172 42274018 ID=Msa0548340-mRNA-1:cds;Parent=Msa0548340-mRNA-1
chr4_1 three_prime_UTR 42273610 42274017 42273610 ID=Msa0548340-mRNA-1:three_prime_utr;Parent=Msa0548340-mRNA-1
Gene Sequence

>Msa0548340

ATGGAAGGTGAAAAAGTAAACGTGGTGATTGATTTGGTGAACGAGATAGCGAACATCTCAGACTTCAGACCTATGGTGAAGAAGCAATATTGCAACTTAGCACGAAGGTTGAAGCTGTTGATTCCTTTGTTTGAAGAGATAAGGGATATGAAAGATTCGATTCCGAATGATACTTCAAAAGCGTTGGTTTTGTTTAAAGATGCTCTTGATTCAGCTAAGGAACTTCTCAGATTTGGTTGTGAAGGAAGCAAGATTTATATGGTCCTTGAGAGGGACCGGATCATGAATAATTTCTATGAGGTGACAGCTCGGTTGGAACAATCACTGGATGCAATTTCCTATGATAAACTTGACATATCCGATGAAGTTAAAGAGCAGGTTGAACTGGTTCTTACTCAGTTCAGAAGAGCCAAAGGGAGAGTTGATGAACCAGATGCCAAGTTGTATGAAGATATGTCATTTCTTTACAACAATAGCAGTGATGCAGCTATAGATCCAGCTGTTCTAAGTCGATTAGCAGACAAACTGCAATTGATGGGAATAGCTGATCTTACACAAGAATCACTCGCTTTGCATGAGATGGTGGCAGTAAGTGGTGGGGATCCAGGGGCGCGCATCGAGAAGATGTCGATGTTATTGAAGAAGATAAAGGATCATGTGCAAATAGAAAACCTAGTCAAGGATGATACTAAAACAGCAAAAGGTGTTTCTTCAGGATTTTACGGACTAGGGGAAAATGATACGAATCATCAAGCCCCTCCTATTCCTAGTGATTTTAAATGTCCGATTTCCTTGGAATTGATGATGGATCCTGTCATTGTTTCAACAGGACAGACTTATGAGCGTTCTTGTATTGAGAAGTGGTTGCAAGACGGCCACGGGACGTGCCCAAAAACACAGCAGAGTCTCACCAGTACTGTTCTCACACCCAACTATGTCTTACGAAGCCTGATAGAACAATGGTGTGAAGCCAATGGCATAGAGCCACCAAAACGACCCAGCACTTCTGAGCCAAGTAAATCAGCATCAGCCTGCACCCCAGCTGAGCGAAGTAAGATTGAAAGTCTTATCCAAAAGCTCACATCCGGTGGTCCTGAAGACCAGAGATCAGCTGCCGGAGAGATCCGGCTTCTTGCAAAACGCAATGCAGATAACCGTGTAGCTATTGCTGAAGCTGGTGCAATCCCTCTCCTTGTTGGTCTCCTCTCCGTGCCAGACTCCCGAACTCAAGAGCACGCTGTTACAGCGCTTCTGAATCTCTCCATATATGAGAGTAACAAAGGAAGCATTGTTTCTTCCGGAGCAGTTCCAGGCATAGTTCATGTGCTGAAAAGGGGAAGCATGGAAGCTCGGGAAAATGCAGCAGCAACACTTTTCAGTCTTTCAGTTATCGATGAAAATAAGGTTACAATTGGTTCTTCAGGAGCGATATCACCACTGGTGACACTGCTGAGTGAGGGTACCCAAAGGGGTAAGAAAGATGCTGCAACTGCACTCTTCAATTTGTGCATTTATCAGGGAAACAAGGGAAAAGCAGTGAGGGCTGGTGTTATTCCGACGCTGATGCGATTGCTGACAGAACCTAGCGGGGGAATGGTGGATGAAGCGTTGGCCATTTTGGCAATTTTGGCTAGTCATCCTGAAGGGAAAGCTGCCATTGGTGCTGCAGAGGCAGTGCCGGTTTTGGTAGAGTTTATTGGGAATGGATCCCCAAGGAACAAAGAGAATGCAGCCGCGGTTTTAGTTCACCTTTGTTCTGGAGATCGACAGTATATAGCACAGGCACAAGAGCTAGGGGTGATGGCTCCATTGTTGGAATTGGCTCAAAACGGCACGGACAGAGGAAAAAGAAAGGCAACACAATTGATAGAGCGTATGAGCAGGATCCGTGAGCAGGAGCAGCATGAAGTTCTGACACAAACTGAACTTCAAGCTCAGAACGATGATATCCATCCACCTTTGGTCATTAACCTTGATATTGACACCTAA
Protein sequence

>Msa0548340

MEGEKVNVVIDLVNEIANISDFRPMVKKQYCNLARRLKLLIPLFEEIRDMKDSIPNDTSKALVLFKDALDSAKELLRFGCEGSKIYMVLERDRIMNNFYEVTARLEQSLDAISYDKLDISDEVKEQVELVLTQFRRAKGRVDEPDAKLYEDMSFLYNNSSDAAIDPAVLSRLADKLQLMGIADLTQESLALHEMVAVSGGDPGARIEKMSMLLKKIKDHVQIENLVKDDTKTAKGVSSGFYGLGENDTNHQAPPIPSDFKCPISLELMMDPVIVSTGQTYERSCIEKWLQDGHGTCPKTQQSLTSTVLTPNYVLRSLIEQWCEANGIEPPKRPSTSEPSKSASACTPAERSKIESLIQKLTSGGPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQEHAVTALLNLSIYESNKGSIVSSGAVPGIVHVLKRGSMEARENAAATLFSLSVIDENKVTIGSSGAISPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPSGGMVDEALAILAILASHPEGKAAIGAAEAVPVLVEFIGNGSPRNKENAAAVLVHLCSGDRQYIAQAQELGVMAPLLELAQNGTDRGKRKATQLIERMSRIREQEQHEVLTQTELQAQNDDIHPPLVINLDIDT*