AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0952040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0952040 MtrunA17_Chr6g0467811 90.186 377 21 2 3 379 102 462 0.0 644
Msa0952040 MtrunA17_Chr4g0065751 86.170 376 52 0 4 379 107 482 0.0 627
Msa0952040 MtrunA17_Chr7g0259621 63.006 346 110 8 4 337 107 446 9.10e-140 406
Msa0952040 MtrunA17_Chr4g0049251 53.468 346 141 5 4 335 84 423 2.34e-118 350
Msa0952040 MtrunA17_Chr2g0280251 50.289 346 156 4 4 335 84 427 3.52e-107 321
Msa0952040 MtrunA17_Chr3g0141551 45.580 362 165 5 4 342 84 436 2.01e-104 316
Msa0952040 MtrunA17_Chr6g0469911 44.241 382 182 6 4 376 106 465 2.43e-101 308
Msa0952040 MtrunA17_Chr7g0217521 73.232 198 53 0 3 200 106 303 3.82e-101 301
Msa0952040 MtrunA17_Chr6g0469771 52.525 198 93 1 4 200 85 282 1.14e-73 230
Msa0952040 MtrunA17_Chr7g0217531 71.831 142 35 1 198 339 4 140 1.61e-62 197
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0952040 AT4G14240.3 72.487 378 91 4 4 378 3 370 7.70e-176 495
Msa0952040 AT4G14240.2 72.487 378 91 4 4 378 98 465 7.74e-175 496
Msa0952040 AT4G14240.1 72.487 378 91 4 4 378 107 474 1.70e-174 495
Msa0952040 AT4G14230.1 67.733 375 114 2 4 376 106 475 1.30e-173 493
Msa0952040 AT1G03270.1 68.639 338 99 3 4 337 105 439 1.09e-154 445
Msa0952040 AT1G47330.2 45.906 403 186 7 4 379 3 400 9.03e-112 334
Msa0952040 AT5G52790.1 50.882 340 141 4 4 342 85 399 5.49e-111 334
Msa0952040 AT5G52790.4 51.039 337 139 4 4 339 85 396 7.24e-111 330
Msa0952040 AT1G47330.1 45.906 403 186 7 4 379 84 481 1.23e-110 334
Msa0952040 AT4G33700.3 49.563 343 158 4 4 335 1 339 3.39e-108 321
Msa0952040 AT4G33700.1 49.563 343 158 4 4 335 84 422 4.53e-107 321
Msa0952040 AT2G14520.2 50.149 335 161 3 4 335 84 415 8.87e-107 320
Msa0952040 AT2G14520.3 49.415 342 159 4 4 335 1 338 3.23e-106 316
Msa0952040 AT2G14520.4 49.415 342 159 4 4 335 84 421 9.76e-106 318
Msa0952040 AT2G14520.1 49.415 342 159 4 4 335 84 421 9.76e-106 318
Msa0952040 AT5G52790.3 50.156 321 134 4 4 323 85 380 1.80e-101 306
Msa0952040 AT5G52790.2 50.156 321 134 4 4 323 85 380 1.80e-101 306
Msa0952040 AT5G52790.5 49.845 323 136 4 4 325 85 382 5.94e-101 306
Msa0952040 AT4G33700.2 59.000 200 81 1 2 200 82 281 4.56e-82 253

Find 127 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAATTCCTTTAGTATATA+AGG 0.170752 6_3:-44988242 Msa0952040:three_prime_UTR
CAAAATCCCAGGAATATTAT+TGG 0.213736 6_3:-44990288 Msa0952040:CDS
AAAGCTCTTGTTTCCATTCA+TGG 0.242346 6_3:-44991327 Msa0952040:CDS
CCATATGACTACTTCCCTTT+TGG 0.252902 6_3:+44989954 None:intergenic
CTGACAGGGGTCTCTGATTC+AGG 0.253158 6_3:+44990132 None:intergenic
TCTATGTAATGCTGTTTCTA+TGG 0.263654 6_3:-44992684 Msa0952040:five_prime_UTR
GTCAAGAGCTATATAATAAC+TGG 0.265425 6_3:-44988034 Msa0952040:three_prime_UTR
TTTGTATCTATCTGTCTATC+TGG 0.272703 6_3:+44993402 Msa0952050:intron
CAAGATCAAACGACTTAAAT+AGG 0.285193 6_3:+44988172 None:intergenic
AAGTTATCTTGAGAGGAAAA+TGG 0.285450 6_3:-44988291 Msa0952040:exon
ATCTATCTGTCTATCTGGTT+CGG 0.297331 6_3:+44993407 Msa0952050:intron
GTCAAGCCTTCAAAGCTTAC+TGG 0.302358 6_3:-44989773 Msa0952040:CDS
ACCAACGAAGGCATACCTTT+TGG 0.342222 6_3:-44993300 Msa0952040:five_prime_UTR
CAGGTTCTGGATTGCGTACT+GGG 0.343310 6_3:-44991384 Msa0952040:CDS
TCAGGTTCTGGATTGCGTAC+TGG 0.343532 6_3:-44991385 Msa0952040:intron
AAAATCCCAGGAATATTATT+GGG 0.347890 6_3:-44990287 Msa0952040:CDS
AATAGTCAACGCATTCAAAA+TGG 0.350757 6_3:+44993344 Msa0952050:intron
TAAAAGCCCAATAATATTCC+TGG 0.351419 6_3:+44990281 None:intergenic
AAGTTTGCACTGGCTTACTA+TGG 0.353103 6_3:+44988316 None:intergenic
TTATTGCCAGTAAGCTTTGA+AGG 0.366582 6_3:+44989767 None:intergenic
AAAGAAAATGTTGATTCAAT+AGG 0.371631 6_3:+44990637 None:intergenic
GGAATTCCTTTAGTATATAA+GGG 0.378620 6_3:-44988241 Msa0952040:three_prime_UTR
CTTGATTGAAGAGTTTATCT+AGG 0.383532 6_3:+44991800 None:intergenic
CTGTCTATCTGGTTCGGGTT+AGG 0.385586 6_3:+44993413 Msa0952050:intron
TCAGTCGACTTTCGGATTGA+TGG 0.388930 6_3:+44989354 None:intergenic
AAGAGTTTATCTAGGTATAG+AGG 0.389663 6_3:+44991808 None:intergenic
ATGTTACCCTCTTTCTTATC+CGG 0.389771 6_3:-44991525 Msa0952040:CDS
CCTTCTTACGAAAATATTCA+TGG 0.390379 6_3:-44989701 Msa0952040:CDS
ATCTCAAATCAGGGAGGCAT+TGG 0.390658 6_3:-44990355 Msa0952040:intron
TACTCCGTTGCTACAAGAAC+TGG 0.397908 6_3:-44989828 Msa0952040:CDS
CAAGCAATTTGTAGTAGATA+TGG 0.402882 6_3:-44991599 Msa0952040:CDS
TCTATCTGTCTATCTGGTTC+GGG 0.403911 6_3:+44993408 Msa0952050:intron
TTTAGATGTTAATTCTAAGT+TGG 0.408467 6_3:-44990617 Msa0952040:CDS
AATATGTTGACGTTCATAAC+AGG 0.420073 6_3:-44989509 Msa0952040:intron
AACAAGAAAACAGCATATTC+CGG 0.426683 6_3:+44993254 Msa0952050:CDS
GGAACGACGAGGCTTTATTT+AGG 0.438067 6_3:-44991362 Msa0952040:CDS
GATTATTCAAAGTTGAAAAG+TGG 0.447614 6_3:-44993505 None:intergenic
CACTACGTTCAAGAATTTCA+AGG 0.449665 6_3:+44993172 None:intergenic
AATATTCATGGTGAAGTGAT+TGG 0.459543 6_3:-44989689 Msa0952040:CDS
TATACTGAATGAGTTCCAAA+AGG 0.462534 6_3:-44989969 Msa0952040:CDS
TAGAGGAAGAGCCTGCATAT+TGG 0.465594 6_3:+44991825 None:intergenic
GTCATGTCCGGTCTCACCCT+TGG 0.469139 6_3:-44993219 Msa0952040:five_prime_UTR
AGTTGAAAAGTGGGAAAGGA+AGG 0.469193 6_3:-44993495 Msa0952040:five_prime_UTR
CCAAAAGGGAAGTAGTCATA+TGG 0.470886 6_3:-44989954 Msa0952040:CDS
CTCTTCGCCGGAGTCATGTC+CGG 0.471245 6_3:-44993231 Msa0952040:five_prime_UTR
TACCCTCTTTCTTATCCGGT+TGG 0.476027 6_3:-44991521 Msa0952040:CDS
ATTATTCAAAGTTGAAAAGT+GGG 0.476349 6_3:-44993504 None:intergenic
CTATCTGATGCTGGAAAACA+AGG 0.478888 6_3:-44988202 Msa0952040:three_prime_UTR
CTTTCAAATGTCCAATATGC+AGG 0.481039 6_3:-44991836 Msa0952040:exon
TTACACCTCCATGCCATGAA+TGG 0.482027 6_3:+44991314 None:intergenic
TTGTATTAGCTATCTGATGC+TGG 0.484388 6_3:-44988211 Msa0952040:three_prime_UTR
CGGATAGATACTGCACTGAC+AGG 0.486816 6_3:+44990117 None:intergenic
ACGAAAGATAGTTTCGAGTA+GGG 0.488297 6_3:-44987953 None:intergenic
GATAACTTTGAAGTTTGCAC+TGG 0.493353 6_3:+44988306 None:intergenic
AGTGATTGGTATTATCACTT+TGG 0.495868 6_3:-44989675 Msa0952040:CDS
CTGTCAGTGCAGTATCTATC+CGG 0.501210 6_3:-44990116 Msa0952040:CDS
AGTTGCAGCTGCTTCCTCAA+TGG 0.501520 6_3:-44989385 Msa0952040:CDS
ATGTTAATTCTAAGTTGGAC+TGG 0.502400 6_3:-44990612 Msa0952040:intron
AAGCAACCCTTATATACTAA+AGG 0.504615 6_3:+44988235 None:intergenic
AGTAGTGATGGCACATTAAG+TGG 0.508371 6_3:-44989725 Msa0952040:CDS
GTAGAATATACCTTTCCAAC+CGG 0.515148 6_3:+44991506 None:intergenic
TCTCAAATCAGGGAGGCATT+GGG 0.517004 6_3:-44990354 Msa0952040:intron
CATGAGACCAAGGGTGAGAC+CGG 0.520568 6_3:+44993212 None:intergenic
GACAGATAGATACAAAACTA+AGG 0.528322 6_3:-44993395 Msa0952040:five_prime_UTR
AGCACTTGATTTGACCGAAA+AGG 0.528383 6_3:-44991130 Msa0952040:intron
GAAGTAAAGTAACAAGAAGC+TGG 0.529515 6_3:+44992705 None:intergenic
ACGCACAAGCCATGAAAAGT+TGG 0.534177 6_3:+44991562 None:intergenic
GAATCCAGTTCTTGTAGCAA+CGG 0.535100 6_3:+44989824 None:intergenic
TCATTCAGTATATCGTATAG+AGG 0.536649 6_3:+44989980 None:intergenic
AAAAGCCCAATAATATTCCT+GGG 0.537470 6_3:+44990282 None:intergenic
GTTGTGAAGACTAAGGGAAA+AGG 0.539836 6_3:-44989926 Msa0952040:CDS
GGCTGCTGTTGTGAAGACTA+AGG 0.543648 6_3:-44989933 Msa0952040:CDS
AAACACACCGTGGTATTCTC+CGG 0.544224 6_3:+44990097 None:intergenic
TGGGAAAGATTCTTGCCCGC+GGG 0.549753 6_3:-44990335 Msa0952040:CDS
GATGCTGGAAAACAAGGCAT+GGG 0.553074 6_3:-44988196 Msa0952040:three_prime_UTR
CTGGTTCGGGTTAGGATCCA+AGG 0.554401 6_3:+44993421 Msa0952050:intron
CTGTCTATTCTCAAAATCCC+AGG 0.554478 6_3:-44990299 Msa0952040:CDS
TCTTGTTTCCATTCATGGCA+TGG 0.555919 6_3:-44991322 Msa0952040:CDS
TCTTTCTTATCCGGTTGGAA+AGG 0.556238 6_3:-44991516 Msa0952040:intron
TGATGCTGGAAAACAAGGCA+TGG 0.556770 6_3:-44988197 Msa0952040:three_prime_UTR
TCAAAGTTGAAAAGTGGGAA+AGG 0.558298 6_3:-44993499 Msa0952040:five_prime_UTR
AGACATACACGTATGACGTA+TGG 0.559217 6_3:-44993369 Msa0952040:five_prime_UTR
TGCCTTCGTTGGTGAGAGCA+AGG 0.559592 6_3:+44993310 Msa0952050:intron
TTTGATGCAAAGAAAAGTGT+TGG 0.562539 6_3:-44989869 Msa0952040:CDS
TCGTATAGAGGCATATCAGA+TGG 0.565213 6_3:+44989992 None:intergenic
TATCTACTACAAATTGCTTG+TGG 0.565273 6_3:+44991602 None:intergenic
AACTTCAAAGTTATCTTGAG+AGG 0.566616 6_3:-44988298 Msa0952040:exon
ATCCATGTTGCAGATCCAAA+AGG 0.568878 6_3:+44993285 Msa0952050:intron
TGATGGAGCTCGTGCCATTG+AGG 0.569237 6_3:+44989371 None:intergenic
CGTGATATTATATTATACGT+GGG 0.569285 6_3:+44987973 None:intergenic
ATTGGACATTTGAAAGCCAA+TGG 0.570238 6_3:+44991843 None:intergenic
CACGAAAGATAGTTTCGAGT+AGG 0.571599 6_3:-44987954 None:intergenic
CTTGAAATTCTTGAACGTAG+TGG 0.572868 6_3:-44993171 Msa0952040:five_prime_UTR
AGTAGATATGGTCTTGCTGT+AGG 0.575361 6_3:-44991587 Msa0952040:CDS
ATACTGAATGAGTTCCAAAA+GGG 0.578438 6_3:-44989968 Msa0952040:CDS
TCCAAAAGGTATGCCTTCGT+TGG 0.579698 6_3:+44993299 Msa0952050:intron
TTTCCAACCGGATAAGAAAG+AGG 0.579776 6_3:+44991518 None:intergenic
ATGTAATGCTGTTTCTATGG+AGG 0.583032 6_3:-44992681 Msa0952040:intron
TCGTGATATTATATTATACG+TGG 0.584044 6_3:+44987972 None:intergenic
TTGGATGCAGGAAGAAATTG+TGG 0.584566 6_3:-44989544 Msa0952040:intron
GGATAGATACTGCACTGACA+GGG 0.588476 6_3:+44990118 None:intergenic
GGTGAGACCGGACATGACTC+CGG 0.594389 6_3:+44993224 None:intergenic
ACTAGTTTGCAGAGTAGTGA+TGG 0.595827 6_3:-44989737 Msa0952040:CDS
TGCAGCGATCATTCTTCCCG+TGG 0.596464 6_3:-44992741 Msa0952040:intron
ATGCAAAGAAAAGTGTTGGT+GGG 0.598862 6_3:-44989865 Msa0952040:CDS
TGCAAAGAAAAGTGTTGGTG+GGG 0.604810 6_3:-44989864 Msa0952040:CDS
TTGGGAAAGATTCTTGCCCG+CGG 0.604895 6_3:-44990336 Msa0952040:CDS
GACTGAGAGACATGAGACCA+AGG 0.614337 6_3:+44993202 None:intergenic
TCAAGAGCTATATAATAACT+GGG 0.615647 6_3:-44988033 Msa0952040:three_prime_UTR
TTCCAACCGGATAAGAAAGA+GGG 0.628963 6_3:+44991519 None:intergenic
TGTTTCCATTCATGGCATGG+AGG 0.632049 6_3:-44991319 Msa0952040:intron
GCTGCTGTTGTGAAGACTAA+GGG 0.633055 6_3:-44989932 Msa0952040:CDS
GTGATATTATATTATACGTG+GGG 0.633119 6_3:+44987974 None:intergenic
TTGAATTCTACAAGATAACA+AGG 0.637128 6_3:-44988262 Msa0952040:three_prime_UTR
CACCTTGCTCTCACCAACGA+AGG 0.637959 6_3:-44993312 Msa0952040:five_prime_UTR
GATGCAAAGAAAAGTGTTGG+TGG 0.638703 6_3:-44989866 Msa0952040:CDS
GATGAGACAACAATTATCAG+TGG 0.641472 6_3:-44991153 Msa0952040:CDS
ATGCTGGAAAACAAGGCATG+GGG 0.656684 6_3:-44988195 Msa0952040:three_prime_UTR
AGGTTCTGGATTGCGTACTG+GGG 0.664585 6_3:-44991383 Msa0952040:CDS
GATAGATACTGCACTGACAG+GGG 0.670187 6_3:+44990119 None:intergenic
GCAACATGGATTGCTTACGC+CGG 0.670459 6_3:-44993273 Msa0952040:five_prime_UTR
ACTGAGAGACATGAGACCAA+GGG 0.671514 6_3:+44993203 None:intergenic
TTTGAGAATAGACAGGAACT+CGG 0.672689 6_3:+44990307 None:intergenic
CTTCGTTGGTGAGAGCAAGG+TGG 0.701135 6_3:+44993313 Msa0952050:intron
TTGCGTACTGGGGAACGACG+AGG 0.706727 6_3:-44991373 Msa0952040:CDS
TATCTATCCGGAGAATACCA+CGG 0.709255 6_3:-44990104 Msa0952040:intron
CAAGAGCTATATAATAACTG+GGG 0.714495 6_3:-44988032 Msa0952040:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATTAAAGAAACTATT+GGG + chr6_3:44988362-44988381 None:intergenic 10.0%
!! TAAATAATTAAAGAAACTAT+TGG + chr6_3:44988363-44988382 None:intergenic 10.0%
!! AAATTCCAATTTATTTATAA+TGG - chr6_3:44991423-44991442 Msa0952040:intron 10.0%
!! ATATACCATTATAAATAAAT+TGG + chr6_3:44991431-44991450 None:intergenic 10.0%
!!! TTTATAATGGTATATATTTT+AGG - chr6_3:44991436-44991455 Msa0952040:intron 10.0%
!!! TTATAATGGTATATATTTTA+GGG - chr6_3:44991437-44991456 Msa0952040:intron 10.0%
!!! AGATTTTAAAACAATATTAT+AGG - chr6_3:44992379-44992398 Msa0952040:intron 10.0%
!!! ATTATTATATAATTTTTGTG+TGG - chr6_3:44993447-44993466 Msa0952040:five_prime_UTR 10.0%
!! TAATAGTATTATATGAAACA+CGG - chr6_3:44988385-44988404 Msa0952040:intron 15.0%
!!! GTATTGTTTATAAGTTTTTA+AGG + chr6_3:44989136-44989155 None:intergenic 15.0%
!! CAATTAATAGTATTAATACA+TGG + chr6_3:44989367-44989386 None:intergenic 15.0%
!! GACAAGTTATTATTATTAAT+TGG + chr6_3:44989813-44989832 None:intergenic 15.0%
!! TTAATGAAAACACAAAAATT+AGG + chr6_3:44990386-44990405 None:intergenic 15.0%
!! ATCAAGAAAATTATTACAAA+GGG + chr6_3:44993038-44993057 None:intergenic 15.0%
!! AATCAAGAAAATTATTACAA+AGG + chr6_3:44993039-44993058 None:intergenic 15.0%
!! AAAGTAGTAATAACAAAAAT+AGG + chr6_3:44993372-44993391 Msa0952050:intron 15.0%
!! TTTCAAATTATTTACTGTGT+CGG - chr6_3:44988643-44988662 Msa0952040:intron 20.0%
!!! TTATGTTTTGTCATAGAAAT+AGG - chr6_3:44988958-44988977 Msa0952040:intron 20.0%
!! GAAAATTGTATCTTCATAAA+CGG - chr6_3:44989093-44989112 Msa0952040:intron 20.0%
!!! GATAAACATTGTTTTGTAAA+TGG + chr6_3:44989283-44989302 None:intergenic 20.0%
!! AATTTGTAGAAATTTGTAGA+GGG + chr6_3:44989309-44989328 None:intergenic 20.0%
!! AAATTTGTAGAAATTTGTAG+AGG + chr6_3:44989310-44989329 None:intergenic 20.0%
!!! GTTTTAATATACATTGTTGA+TGG - chr6_3:44990478-44990497 Msa0952040:intron 20.0%
!! AAAACATAGAAATTACTAGA+TGG + chr6_3:44990762-44990781 None:intergenic 20.0%
!!! AAAGAAAATGTTGATTCAAT+AGG + chr6_3:44990820-44990839 None:intergenic 20.0%
!! TTTAGATGTTAATTCTAAGT+TGG - chr6_3:44990837-44990856 Msa0952040:intron 20.0%
!!! TTTTCAGGAAAATAAAATAG+TGG + chr6_3:44991065-44991084 None:intergenic 20.0%
!!! TAAGAAAGTTGATTTCATTT+GGG + chr6_3:44992190-44992209 None:intergenic 20.0%
!!! ATAAGAAAGTTGATTTCATT+TGG + chr6_3:44992191-44992210 None:intergenic 20.0%
!! TAATTCTAAACTTGAATTGA+AGG - chr6_3:44992291-44992310 Msa0952040:intron 20.0%
!! AATTCTAAACTTGAATTGAA+GGG - chr6_3:44992292-44992311 Msa0952040:intron 20.0%
!! TTAATTATACAGTTAAGTGA+AGG - chr6_3:44992504-44992523 Msa0952040:intron 20.0%
!! AGTTAATTCTTAAGATATTG+AGG + chr6_3:44992550-44992569 None:intergenic 20.0%
!! ATATCTTAAGAATTAACTCT+TGG - chr6_3:44992552-44992571 Msa0952040:intron 20.0%
!!! TTGCTAGTTTTCTATAATAA+GGG + chr6_3:44993397-44993416 Msa0952050:intron 20.0%
!!! ATTATATAATTTTTGTGTGG+AGG - chr6_3:44993450-44993469 Msa0952040:five_prime_UTR 20.0%
!! TGATTTTATAATCATCACCT+TGG - chr6_3:44988016-44988035 Msa0952040:three_prime_UTR 25.0%
! TTCATTGTAATTACAAGTGT+CGG + chr6_3:44988589-44988608 None:intergenic 25.0%
!!! AAATTTATGAAGCACTGATA+CGG + chr6_3:44988686-44988705 None:intergenic 25.0%
!!! AATGGTCTTGTAATTAGAAT+TGG + chr6_3:44989265-44989284 None:intergenic 25.0%
! CATGTATTAAGAAAAGTTGT+TGG + chr6_3:44989479-44989498 None:intergenic 25.0%
!!! GTTACTTTCGTTCTTTTTTT+CGG - chr6_3:44989697-44989716 Msa0952040:CDS 25.0%
! TTATTCTCATATATAGACGA+TGG - chr6_3:44990010-44990029 Msa0952040:intron 25.0%
!! GAAACAAATATTTGTTGGAT+AGG + chr6_3:44990051-44990070 None:intergenic 25.0%
! ATCCAACAAATATTTGTTTC+AGG - chr6_3:44990051-44990070 Msa0952040:intron 25.0%
! AACCTGAAACAAATATTTGT+TGG + chr6_3:44990056-44990075 None:intergenic 25.0%
!!! ATTTAACCTGCTTGTTTTTT+AGG - chr6_3:44990252-44990271 Msa0952040:intron 25.0%
! TGTATATTAAAACTCAACAC+AGG + chr6_3:44990471-44990490 None:intergenic 25.0%
!! TTAATATACATTGTTGATGG+TGG - chr6_3:44990481-44990500 Msa0952040:intron 25.0%
! ATGTTCTTTATACAAGCATA+TGG + chr6_3:44990715-44990734 None:intergenic 25.0%
!!! GTTTCTTTGTTGTTATTCTT+CGG - chr6_3:44990877-44990896 Msa0952040:intron 25.0%
! AAAATCCCAGGAATATTATT+GGG - chr6_3:44991167-44991186 Msa0952040:CDS 25.0%
! AAATTTATAAAAACACACCG+TGG + chr6_3:44991370-44991389 None:intergenic 25.0%
!!! GGAATTTTTTACAGTTTGTT+TGG + chr6_3:44991410-44991429 None:intergenic 25.0%
! GAAGAAATACTATAAACCAA+GGG + chr6_3:44991862-44991881 None:intergenic 25.0%
! AACTGAATGAAATTATCTCT+TGG - chr6_3:44991891-44991910 Msa0952040:intron 25.0%
!!! TGAGAAAATGCTTCATTTTT+GGG - chr6_3:44992216-44992235 Msa0952040:intron 25.0%
!! TTTGTGCTTAATGCTTTTAA+TGG + chr6_3:44992350-44992369 None:intergenic 25.0%
! TTGTTGAATTGAATATGACT+TGG + chr6_3:44992461-44992480 None:intergenic 25.0%
!!! TTTTCTTGATTTGCTTGAAA+AGG - chr6_3:44993048-44993067 Msa0952040:intron 25.0%
! TTGAATTCTACAAGATAACA+AGG - chr6_3:44993192-44993211 Msa0952040:five_prime_UTR 25.0%
! AGGAATTCCTTTAGTATATA+AGG - chr6_3:44993212-44993231 Msa0952040:five_prime_UTR 25.0%
! GGAATTCCTTTAGTATATAA+GGG - chr6_3:44993213-44993232 Msa0952040:five_prime_UTR 25.0%
!!! TGCTAGTTTTCTATAATAAG+GGG + chr6_3:44993396-44993415 Msa0952050:intron 25.0%
!!! GTTGCTAGTTTTCTATAATA+AGG + chr6_3:44993398-44993417 Msa0952050:intron 25.0%
! TCAAGAGCTATATAATAACT+GGG - chr6_3:44993421-44993440 Msa0952040:five_prime_UTR 25.0%
! GTGATATTATATTATACGTG+GGG + chr6_3:44993483-44993502 Msa0952050:intron 25.0%
! CGTGATATTATATTATACGT+GGG + chr6_3:44993484-44993503 Msa0952050:intron 25.0%
! TCGTGATATTATATTATACG+TGG + chr6_3:44993485-44993504 Msa0952050:intron 25.0%
! TTTTCACAAAAGAGAACACT+AGG - chr6_3:44987989-44988008 Msa0952040:three_prime_UTR 30.0%
TTTGTATCTATCTGTCTATC+TGG + chr6_3:44988055-44988074 None:intergenic 30.0%
GACAGATAGATACAAAACTA+AGG - chr6_3:44988059-44988078 Msa0952040:three_prime_UTR 30.0%
AATAGTCAACGCATTCAAAA+TGG + chr6_3:44988113-44988132 None:intergenic 30.0%
AACAAGAAAACAGCATATTC+CGG + chr6_3:44988203-44988222 None:intergenic 30.0%
AAAGAAACTATTGGGTTAAG+AGG + chr6_3:44988354-44988373 None:intergenic 30.0%
!! TCTATGTAATGCTGTTTCTA+TGG - chr6_3:44988770-44988789 Msa0952040:intron 30.0%
AGTAAGCTAATCCTAGTTTA+TGG - chr6_3:44989201-44989220 Msa0952040:intron 30.0%
GTCTTGTAATTAGAATTGGA+GGG + chr6_3:44989261-44989280 None:intergenic 30.0%
TGTTAGATGTTCCGATAAAA+AGG - chr6_3:44989506-44989525 Msa0952040:intron 30.0%
GTTAGATGTTCCGATAAAAA+GGG - chr6_3:44989507-44989526 Msa0952040:intron 30.0%
AAGAGTTTATCTAGGTATAG+AGG + chr6_3:44989649-44989668 None:intergenic 30.0%
CTTGATTGAAGAGTTTATCT+AGG + chr6_3:44989657-44989676 None:intergenic 30.0%
AGAACTTCGTAAAATTGCTT+AGG + chr6_3:44989786-44989805 None:intergenic 30.0%
! TAACTTGTCTTTCTAATTGC+AGG - chr6_3:44989824-44989843 Msa0952040:CDS 30.0%
TATCTACTACAAATTGCTTG+TGG + chr6_3:44989855-44989874 None:intergenic 30.0%
CAAGCAATTTGTAGTAGATA+TGG - chr6_3:44989855-44989874 Msa0952040:CDS 30.0%
! TTTGTTGGATAGGTAGTTTT+TGG + chr6_3:44990041-44990060 None:intergenic 30.0%
!! CAAATATTTGTTTCAGGTTC+TGG - chr6_3:44990057-44990076 Msa0952040:intron 30.0%
!! AAAATAAGTCTTGTCGACTT+TGG - chr6_3:44990185-44990204 Msa0952040:intron 30.0%
AATGATGTTGGAAATGGAAT+AGG - chr6_3:44990532-44990551 Msa0952040:intron 30.0%
ATGATGTTGGAAATGGAATA+GGG - chr6_3:44990533-44990552 Msa0952040:intron 30.0%
ATACATTCTCATGCATACTT+GGG - chr6_3:44990647-44990666 Msa0952040:CDS 30.0%
! ATGTTAATTCTAAGTTGGAC+TGG - chr6_3:44990842-44990861 Msa0952040:intron 30.0%
! TTGTTATTCTTCGGTATCTT+AGG - chr6_3:44990886-44990905 Msa0952040:intron 30.0%
AGAGGAAGAAAATGAAATCT+TGG + chr6_3:44990960-44990979 None:intergenic 30.0%
CATAACGATAAGTCATAAAG+AGG + chr6_3:44990978-44990997 None:intergenic 30.0%
TCAGGAAAATAAAATAGTGG+AGG + chr6_3:44991062-44991081 None:intergenic 30.0%
CAAAATCCCAGGAATATTAT+TGG - chr6_3:44991166-44991185 Msa0952040:CDS 30.0%
AAAAGCCCAATAATATTCCT+GGG + chr6_3:44991175-44991194 None:intergenic 30.0%
TAAAAGCCCAATAATATTCC+TGG + chr6_3:44991176-44991195 None:intergenic 30.0%
TTATAAATTTATTCTCGCCG+CGG - chr6_3:44991380-44991399 Msa0952040:CDS 30.0%
TCATTCAGTATATCGTATAG+AGG + chr6_3:44991477-44991496 None:intergenic 30.0%
TATACTGAATGAGTTCCAAA+AGG - chr6_3:44991485-44991504 Msa0952040:intron 30.0%
ATACTGAATGAGTTCCAAAA+GGG - chr6_3:44991486-44991505 Msa0952040:intron 30.0%
! TTTGATGCAAAGAAAAGTGT+TGG - chr6_3:44991585-44991604 Msa0952040:CDS 30.0%
! CCATGAATATTTTCGTAAGA+AGG + chr6_3:44991756-44991775 None:intergenic 30.0%
CCTTCTTACGAAAATATTCA+TGG - chr6_3:44991753-44991772 Msa0952040:CDS 30.0%
AATATTCATGGTGAAGTGAT+TGG - chr6_3:44991765-44991784 Msa0952040:CDS 30.0%
AGTGATTGGTATTATCACTT+TGG - chr6_3:44991779-44991798 Msa0952040:CDS 30.0%
AATGACAGAAATTTACTTGC+AGG + chr6_3:44991824-44991843 None:intergenic 30.0%
GGAAGAAATACTATAAACCA+AGG + chr6_3:44991863-44991882 None:intergenic 30.0%
! ATTTCATTCAGTTTTCTGTG+CGG + chr6_3:44991884-44991903 None:intergenic 30.0%
AATATGTTGACGTTCATAAC+AGG - chr6_3:44991945-44991964 Msa0952040:intron 30.0%
GATACTATACACAAGTGATA+TGG - chr6_3:44991980-44991999 Msa0952040:intron 30.0%
! CTGAGAAAATGCTTCATTTT+TGG - chr6_3:44992215-44992234 Msa0952040:intron 30.0%
! ATATAAGGCTGGAATTTTCA+TGG + chr6_3:44992418-44992437 None:intergenic 30.0%
TTGGGCTATATTTCTTATGA+CGG + chr6_3:44992579-44992598 None:intergenic 30.0%
ATTATTACAAAGGGTTTGAG+AGG + chr6_3:44993029-44993048 None:intergenic 30.0%
TGTTGGAGAGTTTAGTAAAA+CGG + chr6_3:44993074-44993093 None:intergenic 30.0%
! TTTTACTAAACTCTCCAACA+TGG - chr6_3:44993074-44993093 Msa0952040:intron 30.0%
AAAACAATTAGCATCCATGT+TGG + chr6_3:44993091-44993110 None:intergenic 30.0%
!!! TTGTTTGTTTTTAACCATCC+AGG - chr6_3:44993111-44993130 Msa0952040:intron 30.0%
!!! TGTTTGTTTTTAACCATCCA+GGG - chr6_3:44993112-44993131 Msa0952040:intron 30.0%
AACTTCAAAGTTATCTTGAG+AGG - chr6_3:44993156-44993175 Msa0952040:five_prime_UTR 30.0%
AAGTTATCTTGAGAGGAAAA+TGG - chr6_3:44993163-44993182 Msa0952040:five_prime_UTR 30.0%
AAGCAACCCTTATATACTAA+AGG + chr6_3:44993222-44993241 None:intergenic 30.0%
CAAGATCAAACGACTTAAAT+AGG + chr6_3:44993285-44993304 Msa0952050:intron 30.0%
GTCAAGAGCTATATAATAAC+TGG - chr6_3:44993420-44993439 Msa0952040:five_prime_UTR 30.0%
CAAGAGCTATATAATAACTG+GGG - chr6_3:44993422-44993441 Msa0952040:five_prime_UTR 30.0%
ATCTATCTGTCTATCTGGTT+CGG + chr6_3:44988050-44988069 None:intergenic 35.0%
CACTACGTTCAAGAATTTCA+AGG + chr6_3:44988285-44988304 None:intergenic 35.0%
CTTGAAATTCTTGAACGTAG+TGG - chr6_3:44988283-44988302 Msa0952040:exon 35.0%
CAGTGTAATTACAAGTGTGT+CGG + chr6_3:44988451-44988470 None:intergenic 35.0%
!!! TGGTGTTGTTTTTTAACCAC+GGG + chr6_3:44988732-44988751 None:intergenic 35.0%
!!! CTGGTGTTGTTTTTTAACCA+CGG + chr6_3:44988733-44988752 None:intergenic 35.0%
GAAGTAAAGTAACAAGAAGC+TGG + chr6_3:44988752-44988771 None:intergenic 35.0%
!! ATGTAATGCTGTTTCTATGG+AGG - chr6_3:44988773-44988792 Msa0952040:intron 35.0%
! GACATCCTTTGTTTGTTTGA+AGG - chr6_3:44988867-44988886 Msa0952040:intron 35.0%
AACAGCCTTCAAACAAACAA+AGG + chr6_3:44988875-44988894 None:intergenic 35.0%
TGATAAGCGCTTATTCTCTA+AGG - chr6_3:44988991-44989010 Msa0952040:intron 35.0%
TTCACAAGCTCAAACCAAAT+GGG + chr6_3:44989018-44989037 None:intergenic 35.0%
TTTCACAAGCTCAAACCAAA+TGG + chr6_3:44989019-44989038 None:intergenic 35.0%
ACAAGCACTTACCATAAACT+AGG + chr6_3:44989215-44989234 None:intergenic 35.0%
! GGTCTTGTAATTAGAATTGG+AGG + chr6_3:44989262-44989281 None:intergenic 35.0%
ATCAAAATGAAGAACTCCCA+CGG + chr6_3:44989534-44989553 None:intergenic 35.0%
ATTGGACATTTGAAAGCCAA+TGG + chr6_3:44989614-44989633 None:intergenic 35.0%
CTTTCAAATGTCCAATATGC+AGG - chr6_3:44989618-44989637 Msa0952040:intron 35.0%
!!! TTTCGTTCTTTTTTTCGGTG+AGG - chr6_3:44989702-44989721 Msa0952040:CDS 35.0%
TTGCTATCTTTGTACTTCAC+TGG - chr6_3:44989741-44989760 Msa0952040:CDS 35.0%
ATGTTACCCTCTTTCTTATC+CGG - chr6_3:44989929-44989948 Msa0952040:CDS 35.0%
GTAGAATATACCTTTCCAAC+CGG + chr6_3:44989951-44989970 None:intergenic 35.0%
ATACTACAGATGTTGTTCCA+TGG - chr6_3:44989974-44989993 Msa0952040:CDS 35.0%
ATAACCAGATCTTGAAACCA+TGG + chr6_3:44989994-44990013 None:intergenic 35.0%
! AAAGCTCTTGTTTCCATTCA+TGG - chr6_3:44990127-44990146 Msa0952040:CDS 35.0%
!!! TTGTTTTTTAGGCTGGGAAA+GGG - chr6_3:44990263-44990282 Msa0952040:intron 35.0%
GATGAGACAACAATTATCAG+TGG - chr6_3:44990301-44990320 Msa0952040:CDS 35.0%
! AATTGCAGCACTTACCTTTT+CGG + chr6_3:44990341-44990360 None:intergenic 35.0%
! AGGTTGACATTGATTGTGAA+AGG + chr6_3:44990366-44990385 None:intergenic 35.0%
!!! AATTTTGGAATGAAACGGCA+TGG + chr6_3:44990590-44990609 None:intergenic 35.0%
!!! CGGTGAATTTTGGAATGAAA+CGG + chr6_3:44990595-44990614 None:intergenic 35.0%
GCATGAGAATGTATGACTAA+CGG + chr6_3:44990641-44990660 None:intergenic 35.0%
CATACATTCTCATGCATACT+TGG - chr6_3:44990646-44990665 Msa0952040:CDS 35.0%
CTTCCAACAAATGACTGAAT+TGG - chr6_3:44990909-44990928 Msa0952040:intron 35.0%
GAACCAATTCAGTCATTTGT+TGG + chr6_3:44990915-44990934 None:intergenic 35.0%
! TAGGCAGGATAAAAGTTTTC+AGG + chr6_3:44991080-44991099 None:intergenic 35.0%
TTTGAGAATAGACAGGAACT+CGG + chr6_3:44991150-44991169 None:intergenic 35.0%
!! ATGCAAAGAAAAGTGTTGGT+GGG - chr6_3:44991589-44991608 Msa0952040:CDS 35.0%
! TTATTGCCAGTAAGCTTTGA+AGG + chr6_3:44991690-44991709 None:intergenic 35.0%
TGAAATTATCTCTTGGATGC+AGG - chr6_3:44991898-44991917 Msa0952040:intron 35.0%
!!! CCTTTTTTTCAGTCGACTTT+CGG + chr6_3:44992111-44992130 None:intergenic 35.0%
CGAAAGTCGACTGAAAAAAA+GGG - chr6_3:44992109-44992128 Msa0952040:intron 35.0%
GAAAAAAAGGGATCAGTAAG+TGG - chr6_3:44992121-44992140 Msa0952040:intron 35.0%
TTTCGTGTTTCTCTGTTGTA+TGG - chr6_3:44992255-44992274 Msa0952040:intron 35.0%
!! CAATGCCTTTCTGGAATATA+AGG + chr6_3:44992433-44992452 None:intergenic 35.0%
TGGGCTATATTTCTTATGAC+GGG + chr6_3:44992578-44992597 None:intergenic 35.0%
TCATGTGACTATGTGATGTT+GGG + chr6_3:44992627-44992646 None:intergenic 35.0%
! ATACTGACTAAGTCTCAAGA+GGG - chr6_3:44992847-44992866 Msa0952040:intron 35.0%
!! GATAACTTTGAAGTTTGCAC+TGG + chr6_3:44993151-44993170 None:intergenic 35.0%
TTGTATTAGCTATCTGATGC+TGG - chr6_3:44993243-44993262 Msa0952040:five_prime_UTR 35.0%
AGTTGAAAAGTGGGAAAGGA+AGG - chr6_3:44987959-44987978 Msa0952040:three_prime_UTR 40.0%
! TCTATCTGTCTATCTGGTTC+GGG + chr6_3:44988049-44988068 None:intergenic 40.0%
AGACATACACGTATGACGTA+TGG - chr6_3:44988085-44988104 Msa0952040:three_prime_UTR 40.0%
! TACCTTTTGGATCTGCAACA+TGG - chr6_3:44988167-44988186 Msa0952040:three_prime_UTR 40.0%
ATCCATGTTGCAGATCCAAA+AGG + chr6_3:44988172-44988191 None:intergenic 40.0%
! TGTTTTCTTGTTCTCTTCGC+CGG - chr6_3:44988211-44988230 Msa0952040:three_prime_UTR 40.0%
!!! CCAGCTTGTTTTTTCTGAGA+AGG + chr6_3:44988313-44988332 None:intergenic 40.0%
CCTTCTCAGAAAAAACAAGC+TGG - chr6_3:44988310-44988329 Msa0952040:CDS 40.0%
ACTATTGGGTTAAGAGGAAG+AGG + chr6_3:44988348-44988367 None:intergenic 40.0%
!! TTATTCTCTAAGGCCCCATT+TGG - chr6_3:44989001-44989020 Msa0952040:intron 40.0%
TCACAAGCTCAAACCAAATG+GGG + chr6_3:44989017-44989036 None:intergenic 40.0%
CAAAGAGTTAGGCAGGTTTA+GGG + chr6_3:44989587-44989606 None:intergenic 40.0%
TCAAAGAGTTAGGCAGGTTT+AGG + chr6_3:44989588-44989607 None:intergenic 40.0%
! AGTAGATATGGTCTTGCTGT+AGG - chr6_3:44989867-44989886 Msa0952040:CDS 40.0%
TTCCAACCGGATAAGAAAGA+GGG + chr6_3:44989938-44989957 None:intergenic 40.0%
TTTCCAACCGGATAAGAAAG+AGG + chr6_3:44989939-44989958 None:intergenic 40.0%
TCTTTCTTATCCGGTTGGAA+AGG - chr6_3:44989938-44989957 Msa0952040:CDS 40.0%
TGTTCCATGGTTTCAAGATC+TGG - chr6_3:44989987-44990006 Msa0952040:CDS 40.0%
! TCTTGTTTCCATTCATGGCA+TGG - chr6_3:44990132-44990151 Msa0952040:CDS 40.0%
!!! AACCTGCTTGTTTTTTAGGC+TGG - chr6_3:44990256-44990275 Msa0952040:intron 40.0%
!!! ACCTGCTTGTTTTTTAGGCT+GGG - chr6_3:44990257-44990276 Msa0952040:intron 40.0%
!!! CTTGTTTTTTAGGCTGGGAA+AGG - chr6_3:44990262-44990281 Msa0952040:intron 40.0%
!!! TGTTTTTTAGGCTGGGAAAG+GGG - chr6_3:44990264-44990283 Msa0952040:intron 40.0%
! AGCACTTGATTTGACCGAAA+AGG - chr6_3:44990324-44990343 Msa0952040:CDS 40.0%
!! ACATTGTTGATGGTGGAAAG+TGG - chr6_3:44990488-44990507 Msa0952040:intron 40.0%
TGGAAAGTGGAAACATGTGA+AGG - chr6_3:44990501-44990520 Msa0952040:intron 40.0%
AAGTGGAAACATGTGAAGGT+TGG - chr6_3:44990505-44990524 Msa0952040:intron 40.0%
AAGGTTGGCATCAATGATGT+TGG - chr6_3:44990520-44990539 Msa0952040:intron 40.0%
GGCATCAATGATGTTGGAAA+TGG - chr6_3:44990526-44990545 Msa0952040:intron 40.0%
TTGGAAATGGAATAGGGAAC+TGG - chr6_3:44990539-44990558 Msa0952040:intron 40.0%
! TGGAAGTGAACGGTGAATTT+TGG + chr6_3:44990605-44990624 None:intergenic 40.0%
ACAAGATCACTGGAAGTGAA+CGG + chr6_3:44990615-44990634 None:intergenic 40.0%
!! TGTTTTTGAACAGACTGCTG+AGG - chr6_3:44990783-44990802 Msa0952040:intron 40.0%
ATATATGCAAAACATGCGCG+TGG - chr6_3:44991019-44991038 Msa0952040:intron 40.0%
TATCCTGCCTATCTCAAATC+AGG - chr6_3:44991089-44991108 Msa0952040:intron 40.0%
ATCCTGCCTATCTCAAATCA+GGG - chr6_3:44991090-44991109 Msa0952040:intron 40.0%
!! CTGGGATTTTGAGAATAGAC+AGG + chr6_3:44991157-44991176 None:intergenic 40.0%
CTGTCTATTCTCAAAATCCC+AGG - chr6_3:44991155-44991174 Msa0952040:CDS 40.0%
TATCTATCCGGAGAATACCA+CGG - chr6_3:44991350-44991369 Msa0952040:CDS 40.0%
! TCGTATAGAGGCATATCAGA+TGG + chr6_3:44991465-44991484 None:intergenic 40.0%
! CCATATGACTACTTCCCTTT+TGG + chr6_3:44991503-44991522 None:intergenic 40.0%
CCAAAAGGGAAGTAGTCATA+TGG - chr6_3:44991500-44991519 Msa0952040:intron 40.0%
GTTGTGAAGACTAAGGGAAA+AGG - chr6_3:44991528-44991547 Msa0952040:CDS 40.0%
!! GATGCAAAGAAAAGTGTTGG+TGG - chr6_3:44991588-44991607 Msa0952040:CDS 40.0%
!! TGCAAAGAAAAGTGTTGGTG+GGG - chr6_3:44991590-44991609 Msa0952040:CDS 40.0%
GAATCCAGTTCTTGTAGCAA+CGG + chr6_3:44991633-44991652 None:intergenic 40.0%
! ACTAGTTTGCAGAGTAGTGA+TGG - chr6_3:44991717-44991736 Msa0952040:intron 40.0%
AGTAGTGATGGCACATTAAG+TGG - chr6_3:44991729-44991748 Msa0952040:intron 40.0%
TTTAGATATGTGCATGCCCT+TGG - chr6_3:44991843-44991862 Msa0952040:exon 40.0%
TTGGATGCAGGAAGAAATTG+TGG - chr6_3:44991910-44991929 Msa0952040:intron 40.0%
CCGAAAGTCGACTGAAAAAA+AGG - chr6_3:44992108-44992127 Msa0952040:intron 40.0%
!! AATGCTTCATTTTTGGGCCT+CGG - chr6_3:44992222-44992241 Msa0952040:intron 40.0%
! TCCAGCCTTATATTCCAGAA+AGG - chr6_3:44992425-44992444 Msa0952040:intron 40.0%
ATGTTGGGCTATGTCCATTA+TGG + chr6_3:44992612-44992631 None:intergenic 40.0%
CTCATGTGACTATGTGATGT+TGG + chr6_3:44992628-44992647 None:intergenic 40.0%
ACATCACATAGTCACATGAG+AGG - chr6_3:44992628-44992647 Msa0952040:intron 40.0%
GCATACCGGGAAAAAAATCT+CGG - chr6_3:44992713-44992732 Msa0952040:five_prime_UTR 40.0%
TATCACGTGTTTATCCTGTG+GGG + chr6_3:44992830-44992849 None:intergenic 40.0%
GTATCACGTGTTTATCCTGT+GGG + chr6_3:44992831-44992850 None:intergenic 40.0%
AGTATCACGTGTTTATCCTG+TGG + chr6_3:44992832-44992851 None:intergenic 40.0%
! GATACTGACTAAGTCTCAAG+AGG - chr6_3:44992846-44992865 Msa0952040:intron 40.0%
!!! TTGTTTTTAACCATCCAGGG+AGG - chr6_3:44993115-44993134 Msa0952040:intron 40.0%
!! AAGTTTGCACTGGCTTACTA+TGG + chr6_3:44993141-44993160 None:intergenic 40.0%
CTATCTGATGCTGGAAAACA+AGG - chr6_3:44993252-44993271 Msa0952040:five_prime_UTR 40.0%
!! ACCAACGAAGGCATACCTTT+TGG - chr6_3:44988154-44988173 Msa0952040:three_prime_UTR 45.0%
! TCCAAAAGGTATGCCTTCGT+TGG + chr6_3:44988158-44988177 None:intergenic 45.0%
ACTGAGAGACATGAGACCAA+GGG + chr6_3:44988254-44988273 None:intergenic 45.0%
TATGAAACACGGACACTCCT+CGG - chr6_3:44988396-44988415 Msa0952040:intron 45.0%
!! ATGAAGCACTGATACGGACA+CGG + chr6_3:44988680-44988699 None:intergenic 45.0%
TTCCGATAAAAAGGGACCGT+GGG - chr6_3:44989515-44989534 Msa0952040:CDS 45.0%
CCAATGGCTGTCAAAGAGTT+AGG + chr6_3:44989598-44989617 None:intergenic 45.0%
CCTAACTCTTTGACAGCCAT+TGG - chr6_3:44989595-44989614 Msa0952040:intron 45.0%
TAGAGGAAGAGCCTGCATAT+TGG + chr6_3:44989632-44989651 None:intergenic 45.0%
! CTGTAGGTGCCAACTTTTCA+TGG - chr6_3:44989883-44989902 Msa0952040:CDS 45.0%
ACGCACAAGCCATGAAAAGT+TGG + chr6_3:44989895-44989914 None:intergenic 45.0%
TACCCTCTTTCTTATCCGGT+TGG - chr6_3:44989933-44989952 Msa0952040:CDS 45.0%
!! GGAACGACGAGGCTTTATTT+AGG - chr6_3:44990092-44990111 Msa0952040:intron 45.0%
TGTTTCCATTCATGGCATGG+AGG - chr6_3:44990135-44990154 Msa0952040:CDS 45.0%
TTACACCTCCATGCCATGAA+TGG + chr6_3:44990143-44990162 None:intergenic 45.0%
TCCCAGCCTAAAAAACAAGC+AGG + chr6_3:44990261-44990280 None:intergenic 45.0%
!!! GTTTTTTAGGCTGGGAAAGG+GGG - chr6_3:44990265-44990284 Msa0952040:intron 45.0%
CTAACGGAACACAAGATCAC+TGG + chr6_3:44990625-44990644 None:intergenic 45.0%
! TTTTGAACAGACTGCTGAGG+AGG - chr6_3:44990786-44990805 Msa0952040:intron 45.0%
! ATGCCTCCCTGATTTGAGAT+AGG + chr6_3:44991099-44991118 None:intergenic 45.0%
! ATCTCAAATCAGGGAGGCAT+TGG - chr6_3:44991099-44991118 Msa0952040:intron 45.0%
!! TCTCAAATCAGGGAGGCATT+GGG - chr6_3:44991100-44991119 Msa0952040:intron 45.0%
! GATAGATACTGCACTGACAG+GGG + chr6_3:44991338-44991357 None:intergenic 45.0%
! GGATAGATACTGCACTGACA+GGG + chr6_3:44991339-44991358 None:intergenic 45.0%
CTGTCAGTGCAGTATCTATC+CGG - chr6_3:44991338-44991357 Msa0952040:CDS 45.0%
AAACACACCGTGGTATTCTC+CGG + chr6_3:44991360-44991379 None:intergenic 45.0%
! ACAGTTTGTTTGGAAGACCG+CGG + chr6_3:44991400-44991419 None:intergenic 45.0%
GCTGCTGTTGTGAAGACTAA+GGG - chr6_3:44991522-44991541 Msa0952040:CDS 45.0%
TACTCCGTTGCTACAAGAAC+TGG - chr6_3:44991626-44991645 Msa0952040:intron 45.0%
GTCAAGCCTTCAAAGCTTAC+TGG - chr6_3:44991681-44991700 Msa0952040:intron 45.0%
! TCAGTCGACTTTCGGATTGA+TGG + chr6_3:44992103-44992122 None:intergenic 45.0%
!! ATGCTTCATTTTTGGGCCTC+GGG - chr6_3:44992223-44992242 Msa0952040:intron 45.0%
!! GCCTTTCTGGAATATAAGGC+TGG + chr6_3:44992429-44992448 None:intergenic 45.0%
TTGGACAAGCAATGCCTTTC+TGG + chr6_3:44992442-44992461 None:intergenic 45.0%
!! CATTATGGCAGAGGGGTATT+GGG + chr6_3:44992597-44992616 None:intergenic 45.0%
CTATGTCCATTATGGCAGAG+GGG + chr6_3:44992604-44992623 None:intergenic 45.0%
GCTATGTCCATTATGGCAGA+GGG + chr6_3:44992605-44992624 None:intergenic 45.0%
CACATAGTCACATGAGAGGA+AGG - chr6_3:44992632-44992651 Msa0952040:intron 45.0%
AGGAAGGTGACAGCTTAAGT+TGG - chr6_3:44992648-44992667 Msa0952040:intron 45.0%
GGAAGGTGACAGCTTAAGTT+GGG - chr6_3:44992649-44992668 Msa0952040:intron 45.0%
TACCGGGAAAAAAATCTCGG+AGG - chr6_3:44992716-44992735 Msa0952040:five_prime_UTR 45.0%
!!! CTCCTCCGAGATTTTTTTCC+CGG + chr6_3:44992721-44992740 None:intergenic 45.0%
TCTCTTGTCATGACCCGTAA+AGG - chr6_3:44992743-44992762 Msa0952040:intron 45.0%
TGTCATGACCCGTAAAGGAA+CGG - chr6_3:44992748-44992767 Msa0952040:intron 45.0%
ACTAGACTCCGTTCCTTTAC+GGG + chr6_3:44992759-44992778 None:intergenic 45.0%
CACTAGACTCCGTTCCTTTA+CGG + chr6_3:44992760-44992779 None:intergenic 45.0%
! ACCCATATCCGAGATGGATT+CGG - chr6_3:44992780-44992799 Msa0952040:intron 45.0%
TCCGAATCCATCTCGGATAT+GGG + chr6_3:44992784-44992803 None:intergenic 45.0%
!! AGGCCATTACGCTTTTGACT+AGG - chr6_3:44992803-44992822 Msa0952040:intron 45.0%
! GGACCTAGTCAAAAGCGTAA+TGG + chr6_3:44992809-44992828 None:intergenic 45.0%
CTAAGTCTCAAGAGGGTAAG+CGG - chr6_3:44992854-44992873 Msa0952040:intron 45.0%
TAAGTCTCAAGAGGGTAAGC+GGG - chr6_3:44992855-44992874 Msa0952040:intron 45.0%
AAGGACGGAATCACGGATAA+CGG - chr6_3:44992879-44992898 Msa0952040:intron 45.0%
TACATGCCACGATTCTTGGA+AGG - chr6_3:44992903-44992922 Msa0952040:intron 45.0%
ACATGCCACGATTCTTGGAA+GGG - chr6_3:44992904-44992923 Msa0952040:intron 45.0%
TGATGCTGGAAAACAAGGCA+TGG - chr6_3:44993257-44993276 Msa0952040:five_prime_UTR 45.0%
GATGCTGGAAAACAAGGCAT+GGG - chr6_3:44993258-44993277 Msa0952040:five_prime_UTR 45.0%
ATGCTGGAAAACAAGGCATG+GGG - chr6_3:44993259-44993278 Msa0952040:five_prime_UTR 45.0%
!!! TTTTCTTTTTATAAATAATT+AGG - chr6_3:44991276-44991295 Msa0952040:intron 5.0%
!! CTGTCTATCTGGTTCGGGTT+AGG + chr6_3:44988044-44988063 None:intergenic 50.0%
! GCAACATGGATTGCTTACGC+CGG - chr6_3:44988181-44988200 Msa0952040:three_prime_UTR 50.0%
GACTGAGAGACATGAGACCA+AGG + chr6_3:44988255-44988274 None:intergenic 50.0%
GTTCCGATAAAAAGGGACCG+TGG - chr6_3:44989514-44989533 Msa0952040:CDS 50.0%
! CTCCCACGGTCCCTTTTTAT+CGG + chr6_3:44989520-44989539 None:intergenic 50.0%
TGGCTGTCAAAGAGTTAGGC+AGG + chr6_3:44989594-44989613 None:intergenic 50.0%
!! TCAGGTTCTGGATTGCGTAC+TGG - chr6_3:44990069-44990088 Msa0952040:intron 50.0%
!! CAGGTTCTGGATTGCGTACT+GGG - chr6_3:44990070-44990089 Msa0952040:intron 50.0%
!! AGGTTCTGGATTGCGTACTG+GGG - chr6_3:44990071-44990090 Msa0952040:intron 50.0%
! CTCCCTGATTTGAGATAGGC+AGG + chr6_3:44991095-44991114 None:intergenic 50.0%
CTGCCTATCTCAAATCAGGG+AGG - chr6_3:44991093-44991112 Msa0952040:intron 50.0%
TTGGGAAAGATTCTTGCCCG+CGG - chr6_3:44991118-44991137 Msa0952040:intron 50.0%
! CGGATAGATACTGCACTGAC+AGG + chr6_3:44991340-44991359 None:intergenic 50.0%
GGCTGCTGTTGTGAAGACTA+AGG - chr6_3:44991521-44991540 Msa0952040:CDS 50.0%
AGTTGCAGCTGCTTCCTCAA+TGG - chr6_3:44992069-44992088 Msa0952040:intron 50.0%
CACGAAAAGTTCAAGACCCG+AGG + chr6_3:44992242-44992261 None:intergenic 50.0%
! CCATTATGGCAGAGGGGTAT+TGG + chr6_3:44992598-44992617 None:intergenic 50.0%
CCAATACCCCTCTGCCATAA+TGG - chr6_3:44992595-44992614 Msa0952040:intron 50.0%
GGCTATGTCCATTATGGCAG+AGG + chr6_3:44992606-44992625 None:intergenic 50.0%
!! GGTGACAGCTTAAGTTGGGA+CGG - chr6_3:44992653-44992672 Msa0952040:intron 50.0%
GGTTGAATTGACCACGTGCT+CGG - chr6_3:44992674-44992693 Msa0952040:intron 50.0%
CGGGAAAAAAATCTCGGAGG+AGG - chr6_3:44992719-44992738 Msa0952040:five_prime_UTR 50.0%
CTAGTGACCCATATCCGAGA+TGG - chr6_3:44992774-44992793 Msa0952040:intron 50.0%
CTCCGAATCCATCTCGGATA+TGG + chr6_3:44992785-44992804 None:intergenic 50.0%
! CATATCCGAGATGGATTCGG+AGG - chr6_3:44992783-44992802 Msa0952040:intron 50.0%
AATGGCCTCCGAATCCATCT+CGG + chr6_3:44992791-44992810 None:intergenic 50.0%
!! CTGGTTCGGGTTAGGATCCA+AGG + chr6_3:44988036-44988055 None:intergenic 55.0%
! CTTCGTTGGTGAGAGCAAGG+TGG + chr6_3:44988144-44988163 None:intergenic 55.0%
CACCTTGCTCTCACCAACGA+AGG - chr6_3:44988142-44988161 Msa0952040:three_prime_UTR 55.0%
! TGCCTTCGTTGGTGAGAGCA+AGG + chr6_3:44988147-44988166 None:intergenic 55.0%
CATGAGACCAAGGGTGAGAC+CGG + chr6_3:44988245-44988264 None:intergenic 55.0%
TGTCGGACCGTGTACAACAC+CGG + chr6_3:44988434-44988453 None:intergenic 55.0%
AGCGGGACACGTCTAATTCG+AGG + chr6_3:44988547-44988566 None:intergenic 55.0%
TGCAGCGATCATTCTTCCCG+TGG - chr6_3:44988713-44988732 Msa0952040:intron 55.0%
TGGGAAAGATTCTTGCCCGC+GGG - chr6_3:44991119-44991138 Msa0952040:intron 55.0%
CTGACAGGGGTCTCTGATTC+AGG + chr6_3:44991325-44991344 None:intergenic 55.0%
! TGATGGAGCTCGTGCCATTG+AGG + chr6_3:44992086-44992105 None:intergenic 55.0%
!! GCTTTTGACTAGGTCCCCAC+AGG - chr6_3:44992813-44992832 Msa0952040:intron 55.0%
CTCAAGAGGGTAAGCGGGAA+AGG - chr6_3:44992860-44992879 Msa0952040:intron 55.0%
AGAGGGTAAGCGGGAAAGGA+CGG - chr6_3:44992864-44992883 Msa0952040:intron 55.0%
AGCGGGAAAGGACGGAATCA+CGG - chr6_3:44992872-44992891 Msa0952040:intron 55.0%
CGGCTACATGCCACGATTCT+TGG - chr6_3:44992899-44992918 Msa0952040:intron 55.0%
TGCCACGATTCTTGGAAGGG+CGG - chr6_3:44992907-44992926 Msa0952040:intron 55.0%
TTCCGCCCTTCCAAGAATCG+TGG + chr6_3:44992912-44992931 None:intergenic 55.0%
CTTACTATGGCCTCCCTGGA+TGG + chr6_3:44993128-44993147 None:intergenic 55.0%
CTCTTCGCCGGAGTCATGTC+CGG - chr6_3:44988223-44988242 Msa0952040:three_prime_UTR 60.0%
GGTGAGACCGGACATGACTC+CGG + chr6_3:44988233-44988252 None:intergenic 60.0%
GTCATGTCCGGTCTCACCCT+TGG - chr6_3:44988235-44988254 Msa0952040:three_prime_UTR 60.0%
ACACGGACACTCCTCGGATC+AGG - chr6_3:44988402-44988421 Msa0952040:intron 60.0%
!! GCGTGTCCCGGTGTTGTACA+CGG - chr6_3:44988424-44988443 Msa0952040:intron 60.0%
GTCGGACCGTGTACAACACC+GGG + chr6_3:44988433-44988452 None:intergenic 60.0%
TTGCGTACTGGGGAACGACG+AGG - chr6_3:44990081-44990100 Msa0952040:intron 60.0%
CTGGCTTACTATGGCCTCCC+TGG + chr6_3:44993132-44993151 None:intergenic 60.0%
TCCTCGGATCAGGCGTGTCC+CGG - chr6_3:44988412-44988431 Msa0952040:intron 65.0%
GACGTGTCCCGCTGTCGTGT+CGG - chr6_3:44988554-44988573 Msa0952040:intron 65.0%
! TCCCGCTGTCGTGTCGGTGT+CGG - chr6_3:44988560-44988579 Msa0952040:intron 65.0%
TCCGACACCGACACGACAGC+GGG + chr6_3:44988564-44988583 None:intergenic 65.0%
GTCCGACACCGACACGACAG+CGG + chr6_3:44988565-44988584 None:intergenic 65.0%
CGTGGGCGAGATGGGCATAC+CGG - chr6_3:44992699-44992718 Msa0952040:five_prime_UTR 65.0%
GTGGGCGAGATGGGCATACC+GGG - chr6_3:44992700-44992719 Msa0952040:five_prime_UTR 65.0%
ACCGGGACACGCCTGATCCG+AGG + chr6_3:44988416-44988435 None:intergenic 70.0%
AGGAACTCGGCTGTGCCCGC+GGG + chr6_3:44991137-44991156 None:intergenic 70.0%
CAGGAACTCGGCTGTGCCCG+CGG + chr6_3:44991138-44991157 None:intergenic 70.0%
TTGACCACGTGCTCGGCGCG+TGG - chr6_3:44992681-44992700 Msa0952040:intron 70.0%
TGACCACGTGCTCGGCGCGT+GGG - chr6_3:44992682-44992701 Msa0952040:five_prime_UTR 70.0%
TGCTCGGCGCGTGGGCGAGA+TGG - chr6_3:44992690-44992709 Msa0952040:five_prime_UTR 75.0%
GCTCGGCGCGTGGGCGAGAT+GGG - chr6_3:44992691-44992710 Msa0952040:five_prime_UTR 75.0%
! TCGCCCACGCGCCGAGCACG+TGG + chr6_3:44992688-44992707 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 44987956 44993520 44987956 ID=Msa0952040;Name=Msa0952040
chr6_3 mRNA 44987956 44993520 44987956 ID=Msa0952040-mRNA-1;Parent=Msa0952040;Name=Msa0952040-mRNA-1;_AED=0.16;_eAED=0.16;_QI=467|1|1|1|0.91|0.92|13|346|379
chr6_3 exon 44987956 44988343 44987956 ID=Msa0952040-mRNA-1:exon:10155;Parent=Msa0952040-mRNA-1
chr6_3 exon 44989341 44989422 44989341 ID=Msa0952040-mRNA-1:exon:10154;Parent=Msa0952040-mRNA-1
chr6_3 exon 44989510 44989556 44989510 ID=Msa0952040-mRNA-1:exon:10153;Parent=Msa0952040-mRNA-1
chr6_3 exon 44989649 44990018 44989649 ID=Msa0952040-mRNA-1:exon:10152;Parent=Msa0952040-mRNA-1
chr6_3 exon 44990105 44990178 44990105 ID=Msa0952040-mRNA-1:exon:10151;Parent=Msa0952040-mRNA-1
chr6_3 exon 44990278 44990365 44990278 ID=Msa0952040-mRNA-1:exon:10150;Parent=Msa0952040-mRNA-1
chr6_3 exon 44990613 44990680 44990613 ID=Msa0952040-mRNA-1:exon:10149;Parent=Msa0952040-mRNA-1
chr6_3 exon 44991131 44991202 44991131 ID=Msa0952040-mRNA-1:exon:10148;Parent=Msa0952040-mRNA-1
chr6_3 exon 44991320 44991403 44991320 ID=Msa0952040-mRNA-1:exon:10147;Parent=Msa0952040-mRNA-1
chr6_3 exon 44991517 44991630 44991517 ID=Msa0952040-mRNA-1:exon:10146;Parent=Msa0952040-mRNA-1
chr6_3 exon 44991753 44991865 44991753 ID=Msa0952040-mRNA-1:exon:10145;Parent=Msa0952040-mRNA-1
chr6_3 exon 44992682 44992758 44992682 ID=Msa0952040-mRNA-1:exon:10144;Parent=Msa0952040-mRNA-1
chr6_3 exon 44993145 44993520 44993145 ID=Msa0952040-mRNA-1:exon:10143;Parent=Msa0952040-mRNA-1
chr6_3 five_prime_UTR 44993145 44993520 44993145 ID=Msa0952040-mRNA-1:five_prime_utr;Parent=Msa0952040-mRNA-1
chr6_3 five_prime_UTR 44992682 44992758 44992682 ID=Msa0952040-mRNA-1:five_prime_utr;Parent=Msa0952040-mRNA-1
chr6_3 five_prime_UTR 44991852 44991865 44991852 ID=Msa0952040-mRNA-1:five_prime_utr;Parent=Msa0952040-mRNA-1
chr6_3 CDS 44991753 44991851 44991753 ID=Msa0952040-mRNA-1:cds;Parent=Msa0952040-mRNA-1
chr6_3 CDS 44991517 44991630 44991517 ID=Msa0952040-mRNA-1:cds;Parent=Msa0952040-mRNA-1
chr6_3 CDS 44991320 44991403 44991320 ID=Msa0952040-mRNA-1:cds;Parent=Msa0952040-mRNA-1
chr6_3 CDS 44991131 44991202 44991131 ID=Msa0952040-mRNA-1:cds;Parent=Msa0952040-mRNA-1
chr6_3 CDS 44990613 44990680 44990613 ID=Msa0952040-mRNA-1:cds;Parent=Msa0952040-mRNA-1
chr6_3 CDS 44990278 44990365 44990278 ID=Msa0952040-mRNA-1:cds;Parent=Msa0952040-mRNA-1
chr6_3 CDS 44990105 44990178 44990105 ID=Msa0952040-mRNA-1:cds;Parent=Msa0952040-mRNA-1
chr6_3 CDS 44989649 44990018 44989649 ID=Msa0952040-mRNA-1:cds;Parent=Msa0952040-mRNA-1
chr6_3 CDS 44989510 44989556 44989510 ID=Msa0952040-mRNA-1:cds;Parent=Msa0952040-mRNA-1
chr6_3 CDS 44989341 44989422 44989341 ID=Msa0952040-mRNA-1:cds;Parent=Msa0952040-mRNA-1
chr6_3 CDS 44988302 44988343 44988302 ID=Msa0952040-mRNA-1:cds;Parent=Msa0952040-mRNA-1
chr6_3 three_prime_UTR 44987956 44988301 44987956 ID=Msa0952040-mRNA-1:three_prime_utr;Parent=Msa0952040-mRNA-1
Gene Sequence

>Msa0952040

ATGTCCAATATGCAGGCTCTTCCTCTATACCTAGATAAACTCTTCAATCAAGTTCTTGCTATCATTCTCTCTGTTACTTTCGTTCTTTTTTTCGGTGAGGTTATTCCACAAGCAATTTGTAGTAGATATGGTCTTGCTGTAGGTGCCAACTTTTCATGGCTTGTGCGTATTTTAATGATTATATGTTACCCTCTTTCTTATCCGGTTGGAAAGGTTCTGGATTGCGTACTGGGGAACGACGAGGCTTTATTTAGGCGTGCTCAGTTAAAAGCTCTTGTTTCCATTCATGGCATGGAGGCTGGGAAAGGGGGCGAACTTACACATGATGAGACAACAATTATCAGTGGAGCACTTGATTTGACCGAAAAGACTGCTGAGGAGGCTATGACTCCTATTGAATCAACATTTTCTTTAGATGTTAATTCTAAGTTGGACTGGGAGGCATTGGGAAAGATTCTTGCCCGCGGGCACAGCCGAGTTCCTGTCTATTCTCAAAATCCCAGGAATATTATTGGGCTTTTAATTGTAAAAAATCTTCTTACTGTTAGACCTGAATCAGAGACCCCTGTCAGTGCAGTATCTATCCGGAGAATACCACGGGTTCCATCTGATATGCCTCTATACGATATACTGAATGAGTTCCAAAAGGGAAGTAGTCATATGGCTGCTGTTGTGAAGACTAAGGGAAAAGGCAAAGAAACTCTACAACAAATTGATGAAGAGAAATTTGATGCAAAGAAAAGTGTTGGTGGGGATTCACAGTTAACTACTCCGTTGCTACAAGAACTGGATTCAAAATCAGAAAATGTTGTTGTTGACATTGTCAAGCCTTCAAAGCTTACTGGCAATAATAAGCAAACTAGTTTGCAGAGTAGTGATGGCACATTAAGTGGTCCTTCTTACGAAAATATTCATGGTGAAGTGATTGGTATTATCACTTTGGAAGATGTATTTGAAGAACTCCTGCAAGAAGAAATTGTGGATGAGACAGATGAATATGTTGACGTTCATAACAGAATACGTGTTGCAGCAGTTGCAGCTGCTTCCTCAATGGCACGAGCTCCATCAATCCGAAAGTCGACTGAAAAAAAGGGATCAGGAGGCCATAGTAAGCCAGTGCAAACTTCAAAGTTATCTTGA
Protein sequence

>Msa0952040

MSNMQALPLYLDKLFNQVLAIILSVTFVLFFGEVIPQAICSRYGLAVGANFSWLVRILMIICYPLSYPVGKVLDCVLGNDEALFRRAQLKALVSIHGMEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEALGKILARGHSRVPVYSQNPRNIIGLLIVKNLLTVRPESETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKTKGKGKETLQQIDEEKFDAKKSVGGDSQLTTPLLQELDSKSENVVVDIVKPSKLTGNNKQTSLQSSDGTLSGPSYENIHGEVIGIITLEDVFEELLQEEIVDETDEYVDVHNRIRVAAVAAASSMARAPSIRKSTEKKGSGGHSKPVQTSKLS*