Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1288000 | A0A396GJ14 | 83.784 | 74 | 12 | 0 | 58 | 131 | 289 | 362 | 5.94e-34 | 130 |
| Msa1288000 | A0A396GJ14 | 84.615 | 52 | 7 | 1 | 1 | 51 | 1 | 52 | 1.05e-17 | 87.8 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023610 | Msa1288000 | 0.813250 | 2.815505e-51 | -8.615850e-47 |
| Msa0071340 | Msa1288000 | 0.809594 | 1.751537e-50 | -8.615850e-47 |
| Msa0087140 | Msa1288000 | 0.804857 | 1.766109e-49 | -8.615850e-47 |
| Msa0109970 | Msa1288000 | 0.808432 | 3.106613e-50 | -8.615850e-47 |
| Msa0618430 | Msa1288000 | 0.821331 | 4.273771e-53 | -8.615850e-47 |
| Msa0627410 | Msa1288000 | 0.821929 | 3.109004e-53 | -8.615850e-47 |
| Msa0629850 | Msa1288000 | 0.822704 | 2.054531e-53 | -8.615850e-47 |
| Msa0629880 | Msa1288000 | 0.810750 | 9.869418e-51 | -8.615850e-47 |
| Msa0629930 | Msa1288000 | 0.817532 | 3.140556e-52 | -8.615850e-47 |
| Msa0629940 | Msa1288000 | 0.821485 | 3.938048e-53 | -8.615850e-47 |
| Msa0639460 | Msa1288000 | 0.823081 | 1.678396e-53 | -8.615850e-47 |
| Msa0641900 | Msa1288000 | 0.828671 | 7.895695e-55 | -8.615850e-47 |
| Msa0649970 | Msa1288000 | 0.808801 | 2.590082e-50 | -8.615850e-47 |
| Msa0682360 | Msa1288000 | 0.826757 | 2.276893e-54 | -8.615850e-47 |
| Msa0754180 | Msa1288000 | 0.806149 | 9.463582e-50 | -8.615850e-47 |
| Msa0784580 | Msa1288000 | 0.806035 | 1.000261e-49 | -8.615850e-47 |
| Msa0815320 | Msa1288000 | 0.851019 | 1.165784e-60 | -8.615850e-47 |
| Msa0818010 | Msa1288000 | 0.857610 | 1.451823e-62 | -8.615850e-47 |
| Msa0818030 | Msa1288000 | 0.857087 | 2.072190e-62 | -8.615850e-47 |
| Msa0153200 | Msa1288000 | 0.843336 | 1.492189e-58 | -8.615850e-47 |
| Msa0211680 | Msa1288000 | 0.839877 | 1.218094e-57 | -8.615850e-47 |
| Msa0235190 | Msa1288000 | 0.805282 | 1.438922e-49 | -8.615850e-47 |
| Msa1232060 | Msa1288000 | 0.810779 | 9.728100e-51 | -8.615850e-47 |
| Msa1275770 | Msa1288000 | 0.808737 | 2.673543e-50 | -8.615850e-47 |
| Msa1287560 | Msa1288000 | 0.843160 | 1.662502e-58 | -8.615850e-47 |
| Msa1287700 | Msa1288000 | 0.820780 | 5.725344e-53 | -8.615850e-47 |
| Msa1288000 | Msa1289540 | 0.802209 | 6.253827e-49 | -8.615850e-47 |
| Msa1288000 | Msa1324780 | 0.821858 | 3.228196e-53 | -8.615850e-47 |
| Msa1288000 | Msa1347360 | 0.808284 | 3.339816e-50 | -8.615850e-47 |
| Msa1288000 | Msa1351080 | 0.815433 | 9.268917e-52 | -8.615850e-47 |
| Msa1288000 | Msa1359820 | 0.832762 | 7.857615e-56 | -8.615850e-47 |
| Msa1288000 | Msa1409770 | 0.805761 | 1.141907e-49 | -8.615850e-47 |
| Msa1288000 | Msa1423990 | 0.848757 | 5.001487e-60 | -8.615850e-47 |
| Msa1288000 | Msa1444370 | 0.824001 | 1.022220e-53 | -8.615850e-47 |
| Msa1288000 | Msa1463140 | 0.829121 | 6.145053e-55 | -8.615850e-47 |
| Msa0414590 | Msa1288000 | 0.825373 | 4.856893e-54 | -8.615850e-47 |
| Msa0452410 | Msa1288000 | 0.817861 | 2.647925e-52 | -8.615850e-47 |
| Msa0456200 | Msa1288000 | 0.825433 | 4.700591e-54 | -8.615850e-47 |
| Msa0458700 | Msa1288000 | 0.819038 | 1.432650e-52 | -8.615850e-47 |
| Msa1006250 | Msa1288000 | 0.887352 | 1.538780e-72 | -8.615850e-47 |
| Msa1006390 | Msa1288000 | 0.814018 | 1.907881e-51 | -8.615850e-47 |
| Msa1006440 | Msa1288000 | 0.801394 | 9.192374e-49 | -8.615850e-47 |
| Msa1020720 | Msa1288000 | 0.822415 | 2.397834e-53 | -8.615850e-47 |
| Msa1027240 | Msa1288000 | 0.817194 | 3.741978e-52 | -8.615850e-47 |
| Msa1048490 | Msa1288000 | 0.810237 | 1.273464e-50 | -8.615850e-47 |
| Msa1048610 | Msa1288000 | 0.801474 | 8.853232e-49 | -8.615850e-47 |
| Msa1050480 | Msa1288000 | 0.816713 | 4.797998e-52 | -8.615850e-47 |
| Msa1100180 | Msa1288000 | 0.804446 | 2.151427e-49 | -8.615850e-47 |
| Msa0273570 | Msa1288000 | 0.844601 | 6.834553e-59 | -8.615850e-47 |
| Msa0326200 | Msa1288000 | 0.802760 | 4.815643e-49 | -8.615850e-47 |
| Msa0343610 | Msa1288000 | 0.811921 | 5.497638e-51 | -8.615850e-47 |
| Msa0352010 | Msa1288000 | 0.812881 | 3.391469e-51 | -8.615850e-47 |
| Msa0353690 | Msa1288000 | 0.841696 | 4.062525e-58 | -8.615850e-47 |
| Msa1131820 | Msa1288000 | 0.845861 | 3.118941e-59 | -8.615850e-47 |
| Msa1139410 | Msa1288000 | 0.802006 | 6.884344e-49 | -8.615850e-47 |
| Msa1182730 | Msa1288000 | 0.810054 | 1.394797e-50 | -8.615850e-47 |
| Msa1187060 | Msa1288000 | 0.828933 | 6.825611e-55 | -8.615850e-47 |
| Msa1198090 | Msa1288000 | 0.811759 | 5.961964e-51 | -8.615850e-47 |
| Msa0506000 | Msa1288000 | 0.826459 | 2.681384e-54 | -8.615850e-47 |
| Msa0533290 | Msa1288000 | 0.843439 | 1.400004e-58 | -8.615850e-47 |
| Msa0533430 | Msa1288000 | 0.852848 | 3.525095e-61 | -8.615850e-47 |
| Msa0554130 | Msa1288000 | 0.806664 | 7.371640e-50 | -8.615850e-47 |
| Msa0580610 | Msa1288000 | 0.818396 | 2.003899e-52 | -8.615850e-47 |
| Msa0584130 | Msa1288000 | 0.846521 | 2.061170e-59 | -8.615850e-47 |
| Msa0858360 | Msa1288000 | 0.872436 | 3.185424e-67 | -8.615850e-47 |
| Msa0865390 | Msa1288000 | 0.815175 | 1.057915e-51 | -8.615850e-47 |
| Msa0883370 | Msa1288000 | 0.816844 | 4.485749e-52 | -8.615850e-47 |
| Msa0884920 | Msa1288000 | 0.821726 | 3.463896e-53 | -8.615850e-47 |
| Msa0898360 | Msa1288000 | 0.826452 | 2.692486e-54 | -8.615850e-47 |
| Msa0898370 | Msa1288000 | 0.807789 | 4.256733e-50 | -8.615850e-47 |
| Msa0902020 | Msa1288000 | 0.854774 | 9.837556e-62 | -8.615850e-47 |
| Msa0912370 | Msa1288000 | 0.834411 | 3.043714e-56 | -8.615850e-47 |
| Msa0912500 | Msa1288000 | 0.850664 | 1.467434e-60 | -8.615850e-47 |
| Msa0924370 | Msa1288000 | 0.827997 | 1.148369e-54 | -8.615850e-47 |
| Msa0963310 | Msa1288000 | 0.838613 | 2.591251e-57 | -8.615850e-47 |
| Msa0965750 | Msa1288000 | 0.822127 | 2.797542e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1288000 | MtrunA17_Chr8g0361161 | 83.784 | 74 | 12 | 0 | 58 | 131 | 289 | 362 | 1.14e-37 | 130 |
| Msa1288000 | MtrunA17_Chr8g0361161 | 84.615 | 52 | 7 | 1 | 1 | 51 | 1 | 52 | 2.02e-21 | 87.8 |
| Msa1288000 | MtrunA17_Chr8g0361141 | 83.784 | 74 | 12 | 0 | 58 | 131 | 761 | 834 | 1.17e-35 | 129 |
| Msa1288000 | MtrunA17_Chr8g0361141 | 88.235 | 51 | 6 | 0 | 1 | 51 | 478 | 528 | 1.81e-23 | 94.4 |
| Msa1288000 | MtrunA17_Chr8g0360201 | 75.676 | 74 | 18 | 0 | 58 | 131 | 651 | 724 | 3.51e-31 | 116 |
| Msa1288000 | MtrunA17_Chr8g0360201 | 77.358 | 53 | 9 | 2 | 1 | 51 | 367 | 418 | 1.18e-17 | 77.8 |
| Msa1288000 | MtrunA17_Chr8g0354351 | 58.696 | 46 | 19 | 0 | 58 | 103 | 579 | 624 | 3.88e-11 | 59.3 |
| Msa1288000 | MtrunA17_Chr4g0023221 | 44.000 | 75 | 40 | 2 | 58 | 131 | 974 | 1047 | 8.73e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 17 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGCTTTGACCTGTTTATA+AGG | 0.313933 | 8_3:+40085182 | Msa1288000:CDS |
| AAGTCCTATATTCACGTTCT+TGG | 0.335411 | 8_3:-40086326 | None:intergenic |
| ACGCTTACAAAACTGAATAA+TGG | 0.382465 | 8_3:-40085112 | None:intergenic |
| TTTGATGTTGTATCAATGTT+TGG | 0.424708 | 8_3:+40086388 | Msa1288000:CDS |
| AACATGGTTGGCCTATCATC+TGG | 0.425624 | 8_3:-40086367 | None:intergenic |
| AGTACCAAGAACGTGAATAT+AGG | 0.439547 | 8_3:+40086322 | Msa1288000:intron |
| TCAGAGCATACCTTATAAAC+AGG | 0.442606 | 8_3:-40085192 | None:intergenic |
| ACAAATAAACTTGGCGAAGG+TGG | 0.493941 | 8_3:+40085163 | Msa1288000:CDS |
| TTCAACAAAGTCCAGATGAT+AGG | 0.496265 | 8_3:+40086356 | Msa1288000:CDS |
| CATTGATACAACATCAAACA+TGG | 0.552360 | 8_3:-40086383 | None:intergenic |
| AATGCAGGTGGCTTTGGACA+AGG | 0.563183 | 8_3:-40086430 | None:intergenic |
| GATACAACATCAAACATGGT+TGG | 0.583722 | 8_3:-40086379 | None:intergenic |
| CGTAGCAGACAAGAGCGCAA+AGG | 0.588720 | 8_3:+40085066 | Msa1288000:CDS |
| CAGGTGGCTTTGGACAAGGA+AGG | 0.617923 | 8_3:-40086426 | None:intergenic |
| GATACAAATAAACTTGGCGA+AGG | 0.623150 | 8_3:+40085160 | Msa1288000:CDS |
| AGGTGGCTTTGGACAAGGAA+GGG | 0.628954 | 8_3:-40086425 | None:intergenic |
| CCTGCATTTCAAAACGTGAG+AGG | 0.661282 | 8_3:+40086445 | Msa1288000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATAGATAATATTTTTATT+AGG | - | chr8_3:40086185-40086204 | None:intergenic | 10.0% |
| !! | AATAAAAATATTATCTATCT+AGG | + | chr8_3:40086185-40086204 | Msa1288000:intron | 10.0% |
| !!! | AGATAGATAATATTTTTATT+AGG | - | chr8_3:40086185-40086204 | None:intergenic | 10.0% |
| !! | AATAAAAATATTATCTATCT+AGG | + | chr8_3:40086185-40086204 | Msa1288000:intron | 10.0% |
| !! | ATAATAGTATAAAGTGTAAA+TGG | - | chr8_3:40085247-40085266 | None:intergenic | 15.0% |
| !! | ATAATAGTATAAAGTGTAAA+TGG | - | chr8_3:40085247-40085266 | None:intergenic | 15.0% |
| !! | ATTTGTATCCGAAAAATTAT+TGG | - | chr8_3:40085149-40085168 | None:intergenic | 20.0% |
| !! | TTTATCTTCATCAATATTCT+AGG | + | chr8_3:40085668-40085687 | Msa1288000:intron | 20.0% |
| !!! | AATCCTAAAATATCAGATTT+TGG | + | chr8_3:40085748-40085767 | Msa1288000:intron | 20.0% |
| !!! | ATTCCAAAATCTGATATTTT+AGG | - | chr8_3:40085754-40085773 | None:intergenic | 20.0% |
| !!! | TAAAATATCAGATTTTGGAA+TGG | + | chr8_3:40085753-40085772 | Msa1288000:intron | 20.0% |
| !! | AACTAATTACTCTTTATTGT+TGG | + | chr8_3:40085887-40085906 | Msa1288000:intron | 20.0% |
| !! | ATTTGTATCCGAAAAATTAT+TGG | - | chr8_3:40085149-40085168 | None:intergenic | 20.0% |
| !! | TTTATCTTCATCAATATTCT+AGG | + | chr8_3:40085668-40085687 | Msa1288000:intron | 20.0% |
| !!! | AATCCTAAAATATCAGATTT+TGG | + | chr8_3:40085748-40085767 | Msa1288000:intron | 20.0% |
| !!! | ATTCCAAAATCTGATATTTT+AGG | - | chr8_3:40085754-40085773 | None:intergenic | 20.0% |
| !!! | TAAAATATCAGATTTTGGAA+TGG | + | chr8_3:40085753-40085772 | Msa1288000:intron | 20.0% |
| !! | AACTAATTACTCTTTATTGT+TGG | + | chr8_3:40085887-40085906 | Msa1288000:intron | 20.0% |
| !! | TTTTCGGATACAAATAAACT+TGG | + | chr8_3:40085154-40085173 | Msa1288000:CDS | 25.0% |
| !! | TTCTTACAACTTTTCTTTCT+AGG | + | chr8_3:40085271-40085290 | Msa1288000:intron | 25.0% |
| !! | TCTTACAACTTTTCTTTCTA+GGG | + | chr8_3:40085272-40085291 | Msa1288000:intron | 25.0% |
| !!! | TTCTAGGGTATATTATTGAA+TGG | + | chr8_3:40085287-40085306 | Msa1288000:intron | 25.0% |
| !! | TCTAGGGTATATTATTGAAT+GGG | + | chr8_3:40085288-40085307 | Msa1288000:intron | 25.0% |
| ! | GTCTAACAAGATTATTATGT+TGG | - | chr8_3:40085399-40085418 | None:intergenic | 25.0% |
| ! | AATAATCTTGTTAGACTTCT+CGG | + | chr8_3:40085403-40085422 | Msa1288000:intron | 25.0% |
| !! | AAACAATCCAAGCTTTTATT+GGG | - | chr8_3:40085474-40085493 | None:intergenic | 25.0% |
| !! | AAAACAATCCAAGCTTTTAT+TGG | - | chr8_3:40085475-40085494 | None:intergenic | 25.0% |
| ! | TAAAAAGAAGGATTCTAGAT+TGG | + | chr8_3:40085602-40085621 | Msa1288000:intron | 25.0% |
| ! | AAAAAGAAGGATTCTAGATT+GGG | + | chr8_3:40085603-40085622 | Msa1288000:intron | 25.0% |
| !!! | TGATATTTTAGGATTCATGT+TGG | - | chr8_3:40085743-40085762 | None:intergenic | 25.0% |
| !!! | TCTTTATTGTTGGTTTTTAG+CGG | + | chr8_3:40085897-40085916 | Msa1288000:intron | 25.0% |
| ! | CACTTATAATCTCAAACAAA+AGG | - | chr8_3:40085992-40086011 | None:intergenic | 25.0% |
| !!! | CTTTTGTTTGAGATTATAAG+TGG | + | chr8_3:40085990-40086009 | Msa1288000:intron | 25.0% |
| !!! | AGATCAATTGAGTTGAATTT+AGG | - | chr8_3:40086076-40086095 | None:intergenic | 25.0% |
| !! | CTTTACTTGTTGAATACTTA+AGG | + | chr8_3:40086223-40086242 | Msa1288000:intron | 25.0% |
| ! | TTTGATGTTGTATCAATGTT+TGG | + | chr8_3:40086388-40086407 | Msa1288000:CDS | 25.0% |
| !! | AGTTTTCTTCTATGCTTTTA+GGG | - | chr8_3:40086489-40086508 | None:intergenic | 25.0% |
| !! | AAGTTTTCTTCTATGCTTTT+AGG | - | chr8_3:40086490-40086509 | None:intergenic | 25.0% |
| !! | TTTTCGGATACAAATAAACT+TGG | + | chr8_3:40085154-40085173 | Msa1288000:CDS | 25.0% |
| !! | TTCTTACAACTTTTCTTTCT+AGG | + | chr8_3:40085271-40085290 | Msa1288000:intron | 25.0% |
| !! | TCTTACAACTTTTCTTTCTA+GGG | + | chr8_3:40085272-40085291 | Msa1288000:intron | 25.0% |
| !!! | TTCTAGGGTATATTATTGAA+TGG | + | chr8_3:40085287-40085306 | Msa1288000:intron | 25.0% |
| !! | TCTAGGGTATATTATTGAAT+GGG | + | chr8_3:40085288-40085307 | Msa1288000:intron | 25.0% |
| ! | GTCTAACAAGATTATTATGT+TGG | - | chr8_3:40085399-40085418 | None:intergenic | 25.0% |
| ! | AATAATCTTGTTAGACTTCT+CGG | + | chr8_3:40085403-40085422 | Msa1288000:intron | 25.0% |
| !! | AAACAATCCAAGCTTTTATT+GGG | - | chr8_3:40085474-40085493 | None:intergenic | 25.0% |
| !! | AAAACAATCCAAGCTTTTAT+TGG | - | chr8_3:40085475-40085494 | None:intergenic | 25.0% |
| ! | TAAAAAGAAGGATTCTAGAT+TGG | + | chr8_3:40085602-40085621 | Msa1288000:intron | 25.0% |
| ! | AAAAAGAAGGATTCTAGATT+GGG | + | chr8_3:40085603-40085622 | Msa1288000:intron | 25.0% |
| !!! | TGATATTTTAGGATTCATGT+TGG | - | chr8_3:40085743-40085762 | None:intergenic | 25.0% |
| !!! | TCTTTATTGTTGGTTTTTAG+CGG | + | chr8_3:40085897-40085916 | Msa1288000:intron | 25.0% |
| ! | CACTTATAATCTCAAACAAA+AGG | - | chr8_3:40085992-40086011 | None:intergenic | 25.0% |
| !!! | CTTTTGTTTGAGATTATAAG+TGG | + | chr8_3:40085990-40086009 | Msa1288000:intron | 25.0% |
| !!! | AGATCAATTGAGTTGAATTT+AGG | - | chr8_3:40086076-40086095 | None:intergenic | 25.0% |
| !! | CTTTACTTGTTGAATACTTA+AGG | + | chr8_3:40086223-40086242 | Msa1288000:intron | 25.0% |
| ! | TTTGATGTTGTATCAATGTT+TGG | + | chr8_3:40086388-40086407 | Msa1288000:CDS | 25.0% |
| !! | AGTTTTCTTCTATGCTTTTA+GGG | - | chr8_3:40086489-40086508 | None:intergenic | 25.0% |
| !! | AAGTTTTCTTCTATGCTTTT+AGG | - | chr8_3:40086490-40086509 | None:intergenic | 25.0% |
| ACGCTTACAAAACTGAATAA+TGG | - | chr8_3:40085115-40085134 | None:intergenic | 30.0% | |
| CTAGGGTATATTATTGAATG+GGG | + | chr8_3:40085289-40085308 | Msa1288000:intron | 30.0% | |
| TAGGGTATATTATTGAATGG+GGG | + | chr8_3:40085290-40085309 | Msa1288000:intron | 30.0% | |
| AACAAAAGACTTCAACACTA+GGG | - | chr8_3:40085568-40085587 | None:intergenic | 30.0% | |
| AAACAGATGCAGTAAAAAGA+AGG | + | chr8_3:40085590-40085609 | Msa1288000:intron | 30.0% | |
| ATGAAGATAAAGAAGTCCTT+GGG | - | chr8_3:40085659-40085678 | None:intergenic | 30.0% | |
| TTCATCAATATTCTAGGTTC+CGG | + | chr8_3:40085674-40085693 | Msa1288000:intron | 30.0% | |
| TTAAATCTCGATGAATGATC+CGG | - | chr8_3:40085696-40085715 | None:intergenic | 30.0% | |
| AGCTTCAAGCAAATACAAAT+CGG | + | chr8_3:40085797-40085816 | Msa1288000:intron | 30.0% | |
| ATAAGTGGAAAGAAGAATAC+TGG | + | chr8_3:40086005-40086024 | Msa1288000:intron | 30.0% | |
| TTGTTGAATACTTAAGGCTT+GGG | + | chr8_3:40086229-40086248 | Msa1288000:intron | 30.0% | |
| CATTGATACAACATCAAACA+TGG | - | chr8_3:40086386-40086405 | None:intergenic | 30.0% | |
| ! | GAAGAAAACTTTTCTGTGAA+TGG | + | chr8_3:40086499-40086518 | Msa1288000:CDS | 30.0% |
| ACGCTTACAAAACTGAATAA+TGG | - | chr8_3:40085115-40085134 | None:intergenic | 30.0% | |
| CTAGGGTATATTATTGAATG+GGG | + | chr8_3:40085289-40085308 | Msa1288000:intron | 30.0% | |
| TAGGGTATATTATTGAATGG+GGG | + | chr8_3:40085290-40085309 | Msa1288000:intron | 30.0% | |
| AACAAAAGACTTCAACACTA+GGG | - | chr8_3:40085568-40085587 | None:intergenic | 30.0% | |
| AAACAGATGCAGTAAAAAGA+AGG | + | chr8_3:40085590-40085609 | Msa1288000:intron | 30.0% | |
| ATGAAGATAAAGAAGTCCTT+GGG | - | chr8_3:40085659-40085678 | None:intergenic | 30.0% | |
| TTCATCAATATTCTAGGTTC+CGG | + | chr8_3:40085674-40085693 | Msa1288000:intron | 30.0% | |
| TTAAATCTCGATGAATGATC+CGG | - | chr8_3:40085696-40085715 | None:intergenic | 30.0% | |
| AGCTTCAAGCAAATACAAAT+CGG | + | chr8_3:40085797-40085816 | Msa1288000:intron | 30.0% | |
| ATAAGTGGAAAGAAGAATAC+TGG | + | chr8_3:40086005-40086024 | Msa1288000:intron | 30.0% | |
| TTGTTGAATACTTAAGGCTT+GGG | + | chr8_3:40086229-40086248 | Msa1288000:intron | 30.0% | |
| CATTGATACAACATCAAACA+TGG | - | chr8_3:40086386-40086405 | None:intergenic | 30.0% | |
| ! | GAAGAAAACTTTTCTGTGAA+TGG | + | chr8_3:40086499-40086518 | Msa1288000:CDS | 30.0% |
| ! | AGCGGCAACCAATAATTTTT+CGG | + | chr8_3:40085138-40085157 | Msa1288000:CDS | 35.0% |
| GATACAAATAAACTTGGCGA+AGG | + | chr8_3:40085160-40085179 | Msa1288000:CDS | 35.0% | |
| TCAGAGCATACCTTATAAAC+AGG | - | chr8_3:40085195-40085214 | None:intergenic | 35.0% | |
| TATATTATTGAATGGGGGTG+AGG | + | chr8_3:40085295-40085314 | Msa1288000:intron | 35.0% | |
| ATTCATGCCCAATAAAAGCT+TGG | + | chr8_3:40085464-40085483 | Msa1288000:intron | 35.0% | |
| ! | AGCTTGGATTGTTTTCTCTT+CGG | + | chr8_3:40085480-40085499 | Msa1288000:intron | 35.0% |
| GAACAAAAGACTTCAACACT+AGG | - | chr8_3:40085569-40085588 | None:intergenic | 35.0% | |
| GATGAAGATAAAGAAGTCCT+TGG | - | chr8_3:40085660-40085679 | None:intergenic | 35.0% | |
| !!! | TATCAGATTTTGGAATGGCT+AGG | + | chr8_3:40085758-40085777 | Msa1288000:intron | 35.0% |
| ! | TTTGGAATGGCTAGGATATT+TGG | + | chr8_3:40085766-40085785 | Msa1288000:intron | 35.0% |
| GCAAATACAAATCGGATTGT+TGG | + | chr8_3:40085805-40085824 | Msa1288000:intron | 35.0% | |
| ! | AAATTCGACGTCTTTAGCTT+TGG | + | chr8_3:40085963-40085982 | Msa1288000:intron | 35.0% |
| ACAAGCTCTTTCAATCTTCT+TGG | + | chr8_3:40086039-40086058 | Msa1288000:intron | 35.0% | |
| CTTGTTGAATACTTAAGGCT+TGG | + | chr8_3:40086228-40086247 | Msa1288000:intron | 35.0% | |
| TCTTGGTACTAAATGCTTGT+TGG | - | chr8_3:40086312-40086331 | None:intergenic | 35.0% | |
| AGTACCAAGAACGTGAATAT+AGG | + | chr8_3:40086322-40086341 | Msa1288000:intron | 35.0% | |
| AAGTCCTATATTCACGTTCT+TGG | - | chr8_3:40086329-40086348 | None:intergenic | 35.0% | |
| TTCAACAAAGTCCAGATGAT+AGG | + | chr8_3:40086356-40086375 | Msa1288000:CDS | 35.0% | |
| GATACAACATCAAACATGGT+TGG | - | chr8_3:40086382-40086401 | None:intergenic | 35.0% | |
| ! | AGCGGCAACCAATAATTTTT+CGG | + | chr8_3:40085138-40085157 | Msa1288000:CDS | 35.0% |
| GATACAAATAAACTTGGCGA+AGG | + | chr8_3:40085160-40085179 | Msa1288000:CDS | 35.0% | |
| TCAGAGCATACCTTATAAAC+AGG | - | chr8_3:40085195-40085214 | None:intergenic | 35.0% | |
| TATATTATTGAATGGGGGTG+AGG | + | chr8_3:40085295-40085314 | Msa1288000:intron | 35.0% | |
| ATTCATGCCCAATAAAAGCT+TGG | + | chr8_3:40085464-40085483 | Msa1288000:intron | 35.0% | |
| ! | AGCTTGGATTGTTTTCTCTT+CGG | + | chr8_3:40085480-40085499 | Msa1288000:intron | 35.0% |
| GAACAAAAGACTTCAACACT+AGG | - | chr8_3:40085569-40085588 | None:intergenic | 35.0% | |
| GATGAAGATAAAGAAGTCCT+TGG | - | chr8_3:40085660-40085679 | None:intergenic | 35.0% | |
| !!! | TATCAGATTTTGGAATGGCT+AGG | + | chr8_3:40085758-40085777 | Msa1288000:intron | 35.0% |
| ! | TTTGGAATGGCTAGGATATT+TGG | + | chr8_3:40085766-40085785 | Msa1288000:intron | 35.0% |
| GCAAATACAAATCGGATTGT+TGG | + | chr8_3:40085805-40085824 | Msa1288000:intron | 35.0% | |
| ! | AAATTCGACGTCTTTAGCTT+TGG | + | chr8_3:40085963-40085982 | Msa1288000:intron | 35.0% |
| ACAAGCTCTTTCAATCTTCT+TGG | + | chr8_3:40086039-40086058 | Msa1288000:intron | 35.0% | |
| CTTGTTGAATACTTAAGGCT+TGG | + | chr8_3:40086228-40086247 | Msa1288000:intron | 35.0% | |
| TCTTGGTACTAAATGCTTGT+TGG | - | chr8_3:40086312-40086331 | None:intergenic | 35.0% | |
| AGTACCAAGAACGTGAATAT+AGG | + | chr8_3:40086322-40086341 | Msa1288000:intron | 35.0% | |
| AAGTCCTATATTCACGTTCT+TGG | - | chr8_3:40086329-40086348 | None:intergenic | 35.0% | |
| TTCAACAAAGTCCAGATGAT+AGG | + | chr8_3:40086356-40086375 | Msa1288000:CDS | 35.0% | |
| GATACAACATCAAACATGGT+TGG | - | chr8_3:40086382-40086401 | None:intergenic | 35.0% | |
| !! | CAGTTTTGTAAGCGTTTCAG+CGG | + | chr8_3:40085120-40085139 | Msa1288000:CDS | 40.0% |
| ACAAATAAACTTGGCGAAGG+TGG | + | chr8_3:40085163-40085182 | Msa1288000:CDS | 40.0% | |
| !! | GTGGCTTTGACCTGTTTATA+AGG | + | chr8_3:40085182-40085201 | Msa1288000:CDS | 40.0% |
| TTGCTGTGAAAAGGCTATCT+CGG | + | chr8_3:40085318-40085337 | Msa1288000:intron | 40.0% | |
| AGGGTCTGGGTTATAATGAA+TGG | - | chr8_3:40085549-40085568 | None:intergenic | 40.0% | |
| CGTCGAATTTCACTGAGAAA+AGG | - | chr8_3:40085953-40085972 | None:intergenic | 40.0% | |
| TACTTAAGGCTTGGGATCTT+TGG | + | chr8_3:40086237-40086256 | Msa1288000:intron | 40.0% | |
| TGGAATGGAGCTAATTGACT+CGG | + | chr8_3:40086271-40086290 | Msa1288000:intron | 40.0% | |
| !!! | TTTTGAAATGCAGGTGGCTT+TGG | - | chr8_3:40086439-40086458 | None:intergenic | 40.0% |
| !! | CAGTTTTGTAAGCGTTTCAG+CGG | + | chr8_3:40085120-40085139 | Msa1288000:CDS | 40.0% |
| ACAAATAAACTTGGCGAAGG+TGG | + | chr8_3:40085163-40085182 | Msa1288000:CDS | 40.0% | |
| !! | GTGGCTTTGACCTGTTTATA+AGG | + | chr8_3:40085182-40085201 | Msa1288000:CDS | 40.0% |
| TTGCTGTGAAAAGGCTATCT+CGG | + | chr8_3:40085318-40085337 | Msa1288000:intron | 40.0% | |
| AGGGTCTGGGTTATAATGAA+TGG | - | chr8_3:40085549-40085568 | None:intergenic | 40.0% | |
| CGTCGAATTTCACTGAGAAA+AGG | - | chr8_3:40085953-40085972 | None:intergenic | 40.0% | |
| TACTTAAGGCTTGGGATCTT+TGG | + | chr8_3:40086237-40086256 | Msa1288000:intron | 40.0% | |
| TGGAATGGAGCTAATTGACT+CGG | + | chr8_3:40086271-40086290 | Msa1288000:intron | 40.0% | |
| !!! | TTTTGAAATGCAGGTGGCTT+TGG | - | chr8_3:40086439-40086458 | None:intergenic | 40.0% |
| GAAAAGGCTATCTCGGAGAT+CGG | + | chr8_3:40085325-40085344 | Msa1288000:intron | 45.0% | |
| AAAAGGCTATCTCGGAGATC+GGG | + | chr8_3:40085326-40085345 | Msa1288000:intron | 45.0% | |
| AGACTTCAACACTAGGGTCT+GGG | - | chr8_3:40085562-40085581 | None:intergenic | 45.0% | |
| AAGACTTCAACACTAGGGTC+TGG | - | chr8_3:40085563-40085582 | None:intergenic | 45.0% | |
| GGATTCTAGATTGGGAAACG+CGG | + | chr8_3:40085611-40085630 | Msa1288000:intron | 45.0% | |
| GATTCTAGATTGGGAAACGC+GGG | + | chr8_3:40085612-40085631 | Msa1288000:intron | 45.0% | |
| ACGCGGGTTCGAATAATTGA+AGG | + | chr8_3:40085628-40085647 | Msa1288000:intron | 45.0% | |
| !! | ATAATTGAAGGCATCGCCCA+AGG | + | chr8_3:40085640-40085659 | Msa1288000:intron | 45.0% |
| CATGTCTCCTGAGTATGCTA+TGG | + | chr8_3:40085923-40085942 | Msa1288000:intron | 45.0% | |
| TCTCCTGAGTATGCTATGGA+AGG | + | chr8_3:40085927-40085946 | Msa1288000:intron | 45.0% | |
| GATCTTTGGACCAACGATTC+TGG | + | chr8_3:40086251-40086270 | Msa1288000:intron | 45.0% | |
| ! | TTGGACCAACGATTCTGGAA+TGG | + | chr8_3:40086256-40086275 | Msa1288000:intron | 45.0% |
| TAGCTCCATTCCAGAATCGT+TGG | - | chr8_3:40086264-40086283 | None:intergenic | 45.0% | |
| !! | GGAGCTAATTGACTCGGAAT+TGG | + | chr8_3:40086277-40086296 | Msa1288000:intron | 45.0% |
| !! | AACATGGTTGGCCTATCATC+TGG | - | chr8_3:40086370-40086389 | None:intergenic | 45.0% |
| !!! | CTCACGTTTTGAAATGCAGG+TGG | - | chr8_3:40086445-40086464 | None:intergenic | 45.0% |
| !!! | CCTCTCACGTTTTGAAATGC+AGG | - | chr8_3:40086448-40086467 | None:intergenic | 45.0% |
| CCTGCATTTCAAAACGTGAG+AGG | + | chr8_3:40086445-40086464 | Msa1288000:CDS | 45.0% | |
| GAAAAGGCTATCTCGGAGAT+CGG | + | chr8_3:40085325-40085344 | Msa1288000:intron | 45.0% | |
| AAAAGGCTATCTCGGAGATC+GGG | + | chr8_3:40085326-40085345 | Msa1288000:intron | 45.0% | |
| AGACTTCAACACTAGGGTCT+GGG | - | chr8_3:40085562-40085581 | None:intergenic | 45.0% | |
| AAGACTTCAACACTAGGGTC+TGG | - | chr8_3:40085563-40085582 | None:intergenic | 45.0% | |
| GGATTCTAGATTGGGAAACG+CGG | + | chr8_3:40085611-40085630 | Msa1288000:intron | 45.0% | |
| GATTCTAGATTGGGAAACGC+GGG | + | chr8_3:40085612-40085631 | Msa1288000:intron | 45.0% | |
| ACGCGGGTTCGAATAATTGA+AGG | + | chr8_3:40085628-40085647 | Msa1288000:intron | 45.0% | |
| !! | ATAATTGAAGGCATCGCCCA+AGG | + | chr8_3:40085640-40085659 | Msa1288000:intron | 45.0% |
| CATGTCTCCTGAGTATGCTA+TGG | + | chr8_3:40085923-40085942 | Msa1288000:intron | 45.0% | |
| TCTCCTGAGTATGCTATGGA+AGG | + | chr8_3:40085927-40085946 | Msa1288000:intron | 45.0% | |
| GATCTTTGGACCAACGATTC+TGG | + | chr8_3:40086251-40086270 | Msa1288000:intron | 45.0% | |
| ! | TTGGACCAACGATTCTGGAA+TGG | + | chr8_3:40086256-40086275 | Msa1288000:intron | 45.0% |
| TAGCTCCATTCCAGAATCGT+TGG | - | chr8_3:40086264-40086283 | None:intergenic | 45.0% | |
| !! | GGAGCTAATTGACTCGGAAT+TGG | + | chr8_3:40086277-40086296 | Msa1288000:intron | 45.0% |
| !! | AACATGGTTGGCCTATCATC+TGG | - | chr8_3:40086370-40086389 | None:intergenic | 45.0% |
| !!! | CTCACGTTTTGAAATGCAGG+TGG | - | chr8_3:40086445-40086464 | None:intergenic | 45.0% |
| !!! | CCTCTCACGTTTTGAAATGC+AGG | - | chr8_3:40086448-40086467 | None:intergenic | 45.0% |
| CCTGCATTTCAAAACGTGAG+AGG | + | chr8_3:40086445-40086464 | Msa1288000:CDS | 45.0% | |
| TATCTCGGAGATCGGGTCAA+GGG | + | chr8_3:40085333-40085352 | Msa1288000:intron | 50.0% | |
| AGGCCTTCCATAGCATACTC+AGG | - | chr8_3:40085933-40085952 | None:intergenic | 50.0% | |
| !! | AGGTGGCTTTGGACAAGGAA+GGG | - | chr8_3:40086428-40086447 | None:intergenic | 50.0% |
| !! | AATGCAGGTGGCTTTGGACA+AGG | - | chr8_3:40086433-40086452 | None:intergenic | 50.0% |
| TATCTCGGAGATCGGGTCAA+GGG | + | chr8_3:40085333-40085352 | Msa1288000:intron | 50.0% | |
| AGGCCTTCCATAGCATACTC+AGG | - | chr8_3:40085933-40085952 | None:intergenic | 50.0% | |
| !! | AGGTGGCTTTGGACAAGGAA+GGG | - | chr8_3:40086428-40086447 | None:intergenic | 50.0% |
| !! | AATGCAGGTGGCTTTGGACA+AGG | - | chr8_3:40086433-40086452 | None:intergenic | 50.0% |
| ! | CGTAGCAGACAAGAGCGCAA+AGG | + | chr8_3:40085066-40085085 | Msa1288000:CDS | 55.0% |
| GGGGTGAGGTTGCTGTGAAA+AGG | + | chr8_3:40085309-40085328 | Msa1288000:intron | 55.0% | |
| CTATCTCGGAGATCGGGTCA+AGG | + | chr8_3:40085332-40085351 | Msa1288000:intron | 55.0% | |
| !! | CAGGTGGCTTTGGACAAGGA+AGG | - | chr8_3:40086429-40086448 | None:intergenic | 55.0% |
| ! | CGTAGCAGACAAGAGCGCAA+AGG | + | chr8_3:40085066-40085085 | Msa1288000:CDS | 55.0% |
| GGGGTGAGGTTGCTGTGAAA+AGG | + | chr8_3:40085309-40085328 | Msa1288000:intron | 55.0% | |
| CTATCTCGGAGATCGGGTCA+AGG | + | chr8_3:40085332-40085351 | Msa1288000:intron | 55.0% | |
| !! | CAGGTGGCTTTGGACAAGGA+AGG | - | chr8_3:40086429-40086448 | None:intergenic | 55.0% |
| TCGGAGATCGGGTCAAGGGT+GGG | + | chr8_3:40085337-40085356 | Msa1288000:intron | 60.0% | |
| TCGGAGATCGGGTCAAGGGT+GGG | + | chr8_3:40085337-40085356 | Msa1288000:intron | 60.0% | |
| CTCGGAGATCGGGTCAAGGG+TGG | + | chr8_3:40085336-40085355 | Msa1288000:intron | 65.0% | |
| GAGATCGGGTCAAGGGTGGG+AGG | + | chr8_3:40085340-40085359 | Msa1288000:intron | 65.0% | |
| CTCGGAGATCGGGTCAAGGG+TGG | + | chr8_3:40085336-40085355 | Msa1288000:intron | 65.0% | |
| GAGATCGGGTCAAGGGTGGG+AGG | + | chr8_3:40085340-40085359 | Msa1288000:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 40085037 | 40086552 | 40085037 | ID=Msa1288000;Name=Msa1288000 |
| chr8_3 | mRNA | 40085037 | 40086552 | 40085037 | ID=Msa1288000-mRNA-1;Parent=Msa1288000;Name=Msa1288000-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0|0.5|1|1|2|0|131 |
| chr8_3 | exon | 40085037 | 40085203 | 40085037 | ID=Msa1288000-mRNA-1:exon:11137;Parent=Msa1288000-mRNA-1 |
| chr8_3 | exon | 40086324 | 40086552 | 40086324 | ID=Msa1288000-mRNA-1:exon:11138;Parent=Msa1288000-mRNA-1 |
| chr8_3 | CDS | 40085037 | 40085203 | 40085037 | ID=Msa1288000-mRNA-1:cds;Parent=Msa1288000-mRNA-1 |
| chr8_3 | CDS | 40086324 | 40086552 | 40086324 | ID=Msa1288000-mRNA-1:cds;Parent=Msa1288000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
