AlfalfaGEDB | Msa0322840

M. sativa cultivar zhongmu-4 / Msa0322840

KEGG: -
GO: GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
PFAM: PF00190.25

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0322840	XP_013463539.1	94.286	210	12	0	1	210	1	210	9.76e-141	401

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0322840	sp\|Q9ZRA4\|AB19A_PRUPE	74.038	208	53	1	3	209	1	208	1.82e-108	312

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002930	Msa0322840	0.863218	2.911717e-64	-8.615850e-47
Msa0003040	Msa0322840	0.800174	1.630710e-48	-8.615850e-47
Msa0005050	Msa0322840	0.802188	6.316101e-49	-8.615850e-47
Msa0006980	Msa0322840	0.802716	4.915438e-49	-8.615850e-47
Msa0012440	Msa0322840	0.828336	9.514009e-55	-8.615850e-47
Msa0015710	Msa0322840	0.819155	1.347291e-52	-8.615850e-47
Msa0016120	Msa0322840	0.840143	1.038258e-57	-8.615850e-47
Msa0019600	Msa0322840	0.802844	4.625315e-49	-8.615850e-47
Msa0022640	Msa0322840	0.826040	3.374624e-54	-8.615850e-47
Msa0036430	Msa0322840	0.851234	1.013691e-60	-8.615850e-47

Showing 1 to 10 of 181 entries

Previous1 2 3 4 5…19Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0322840	MtrunA17_Chr2g0300581	94.286	210	12	0	1	210	1	210	8.98e-145	401
Msa0322840	MtrunA17_Chr2g0300591	93.810	210	13	0	1	210	1	210	1.19e-144	401
Msa0322840	MtrunA17_Chr2g0300561	85.238	210	31	0	1	210	1	210	1.21e-129	363
Msa0322840	MtrunA17_Chr8g0343911	63.462	208	76	0	3	210	1	208	1.59e-91	266
Msa0322840	MtrunA17_Chr8g0343934	54.067	209	92	3	4	210	3	209	3.54e-78	233
Msa0322840	MtrunA17_Chr8g0343954	55.440	193	84	2	18	210	19	209	1.91e-76	228
Msa0322840	MtrunA17_Chr8g0343961	53.110	209	94	3	4	210	3	209	1.57e-75	226
Msa0322840	MtrunA17_Chr8g0343921	51.442	208	95	2	7	210	2	207	8.58e-72	216
Msa0322840	MtrunA17_Chr2g0301611	48.585	212	104	4	1	210	1	209	5.49e-69	209
Msa0322840	MtrunA17_Chr2g0302171	50.239	209	100	3	4	210	3	209	2.45e-68	208

Showing 1 to 10 of 62 entries

Previous1 2 3 4 5 6 7Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0322840	AT5G20630.1	65.714	210	71	1	1	209	1	210	1.29e-95	278
Msa0322840	AT1G72610.1	62.500	208	78	0	3	210	1	208	5.38e-86	253
Msa0322840	AT3G04200.1	45.312	192	97	5	23	207	33	223	1.95e-43	145
Msa0322840	AT5G39160.3	42.105	190	102	3	23	207	30	216	4.10e-42	142
Msa0322840	AT5G39190.1	42.408	191	104	3	23	207	30	220	2.58e-41	140
Msa0322840	AT5G39160.1	42.408	191	104	3	23	207	30	220	2.81e-41	140
Msa0322840	AT5G39130.1	41.885	191	105	3	23	207	30	220	7.84e-41	139
Msa0322840	AT5G39120.1	38.498	213	122	4	1	204	5	217	6.46e-40	136
Msa0322840	AT5G39110.1	41.489	188	103	3	23	203	30	217	7.47e-40	136
Msa0322840	AT1G18980.1	39.901	203	117	3	3	203	16	215	1.62e-39	135

Showing 1 to 10 of 39 entries

Previous1 2 3 4Next

Find 48 sgRNAs with CRISPR-Local

Find 51 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCATAACATCACCTTTG+TGG	0.454407	2_4:+26405059	None:intergenic
AACCAACACTTCCGAAGCAC+CGG	0.468211	2_4:+26405147	None:intergenic
AAGAAGCTTAAGGGTGTTCT+TGG	0.328993	2_4:-26404863	Msa0322840:CDS
AAGCTTAAGGGTGTTCTTGG+AGG	0.489760	2_4:-26404860	Msa0322840:CDS
AAGGGTGTTCTTGGAGGTAG+TGG	0.422600	2_4:-26404854	Msa0322840:CDS
AAGGTAAACAACATTGTCAG+AGG	0.569703	2_4:+26405090	None:intergenic
AAGTGGAACAACACCACCGA+CGG	0.642171	2_4:+26405180	None:intergenic
AATGCACCAAATGGCCCAGC+TGG	0.454211	2_4:-26405373	Msa0322840:CDS
ACCAACACTTCCGAAGCACC+GGG	0.535461	2_4:+26405148	None:intergenic
AGCGGCTTTGATAATGTTTG+TGG	0.500309	2_4:+26405276	None:intergenic

Showing 1 to 10 of 48 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATCATAACATCACCTTTG+TGG	+	chr2_4:26405254-26405273	None:intergenic	30.0%
CATTTCCAAATTAATGTTGG+TGG	-	chr2_4:26405291-26405310	Msa0322840:CDS	30.0%
TAGAACCACCAACATTAATT+TGG	+	chr2_4:26405299-26405318	None:intergenic	30.0%
TAATCCTCGTTTACAGATAT+TGG	-	chr2_4:26405350-26405369	Msa0322840:CDS	30.0%
TAATCCAATATCTGTAAACG+AGG	+	chr2_4:26405357-26405376	None:intergenic	30.0%
ATTAAAGGAACAATCAGTGC+TGG	-	chr2_4:26405189-26405208	Msa0322840:CDS	35.0%
AAGGTAAACAACATTGTCAG+AGG	+	chr2_4:26405223-26405242	None:intergenic	35.0%
TACCTTAAAACACTCCACAA+AGG	-	chr2_4:26405237-26405256	Msa0322840:CDS	35.0%
TGCTACGCAGAAATCTACTA+CGG	+	chr2_4:26404911-26404930	None:intergenic	40.0%
GCAGATTACAATGCACCAAA+TGG	-	chr2_4:26404928-26404947	Msa0322840:CDS	40.0%

Showing 1 to 10 of 51 entries

Previous1 2 3 4 5 6Next

Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	26404850	26405482	26404850	ID=Msa0322840;Name=Msa0322840
chr2_4	mRNA	26404850	26405482	26404850	ID=Msa0322840-mRNA-1;Parent=Msa0322840;Name=Msa0322840-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|210
chr2_4	exon	26404850	26405482	26404850	ID=Msa0322840-mRNA-1:exon:9214;Parent=Msa0322840-mRNA-1
chr2_4	CDS	26404850	26405482	26404850	ID=Msa0322840-mRNA-1:cds;Parent=Msa0322840-mRNA-1

Gene Sequence

>Msa0322840

ATGAAGATGATTCTAACTATCTTCTTCATTTTTTCTCTTCTTTCACTTGCTCATGCAGCCGTAGTAGATTTCTGCGTAGCAGATTACAATGCACCAAATGGCCCAGCTGGATATTCTTGCAAACCACCATCAAAGGTAACCGCGAATGACTTCGTCTACCACGGCCTAGCTGCAGCTGGAAACACCACAAACATTATCAAAGCCGCTGTTAGCACCGCATTTGACGCACAATTTCCTGGTGTAAACGGTCTTGGAATCTCCATTGCGCGTTTAGATTTAGCCGTCGGTGGTGTTGTTCCACTTCACACACACCCCGGTGCTTCGGAAGTGTTGGTTGTTATTAAAGGAACAATCAGTGCTGGTTTTATTTCCTCTGACAATGTTGTTTACCTTAAAACACTCCACAAAGGTGATGTTATGATTTTTCCACAAGGATTGTTGCATTTCCAAATTAATGTTGGTGGTTCTAATGCACTTACTTTTAATAGCTTTAGTAGTGCTAATCCTCGTTTACAGATATTGGATTACGCTTTGTTTAAAAGCGATTTTCCAACTGAGTTGATTACTAAAACTACTTTTATTGATGCTGCTGTAGTGAAGAAGCTTAAGGGTGTTCTTGGAGGTAGTGGTTAA

Protein sequence

>Msa0322840

MKMILTIFFIFSLLSLAHAAVVDFCVADYNAPNGPAGYSCKPPSKVTANDFVYHGLAAAGNTTNIIKAAVSTAFDAQFPGVNGLGISIARLDLAVGGVVPLHTHPGASEVLVVIKGTISAGFISSDNVVYLKTLHKGDVMIFPQGLLHFQINVGGSNALTFNSFSSANPRLQILDYALFKSDFPTELITKTTFIDAAVVKKLKGVLGGSG*