AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0012770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 104 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATGTGATTGAATTGTTAA+AGG 0.210176 1_1:-19475153 Msa0012770:three_prime_UTR
CTTCTACTTCTAAGAATATT+AGG 0.213618 1_1:+19475251 None:intergenic
TGGCCAGTTATGACCCCTTT+TGG 0.221232 1_1:-19475349 Msa0012770:three_prime_UTR
GGGGAAGGTGAGGGTGGTGG+TGG 0.271395 1_1:-19475693 Msa0012770:CDS
GGTGGGGAAGGTGAGGGTGG+TGG 0.306460 1_1:-19475696 Msa0012770:CDS
GGAAGAAAAGAAGGATGTTT+TGG 0.312282 1_1:-19475221 Msa0012770:three_prime_UTR
GGAGGAGATTTATAATAGTA+TGG 0.317641 1_1:-19476031 Msa0012770:CDS
GGAGATGGTGAAGGTGGTGG+TGG 0.320320 1_1:-19475953 Msa0012770:CDS
GGTGGGGAAGGCGAGGGTGG+TGG 0.328631 1_1:-19475648 Msa0012770:CDS
GGGGAAGGCGAGGGTGGTGG+TGG 0.331259 1_1:-19475645 Msa0012770:CDS
GGTGGAGGTGACGGGGATGG+AGG 0.337400 1_1:-19475534 Msa0012770:three_prime_UTR
GGAGGTGACGGGGATGGAGG+AGG 0.341597 1_1:-19475531 Msa0012770:three_prime_UTR
CTTAGAAGTAGAAGAAAAGT+TGG 0.342928 1_1:-19475242 Msa0012770:three_prime_UTR
AACCAATTGATTATTTGAAT+TGG 0.343041 1_1:+19475113 None:intergenic
GGTGAAGGAGTTGGTGGTGG+TGG 0.352365 1_1:-19475597 Msa0012770:three_prime_UTR
GGTGGTGGGGAAGGCGAGGG+TGG 0.366503 1_1:-19475651 Msa0012770:CDS
GGTGACGGGGATGGAGGAGG+TGG 0.368730 1_1:-19475528 Msa0012770:three_prime_UTR
GGTGGAGGAGATGGTGAAGG+GGG 0.372665 1_1:-19476007 Msa0012770:CDS
GCCCCAAAAGGGGTCATAAC+TGG 0.387754 1_1:+19475346 Msa0012780:CDS
GACCAATTCAAATAATCAAT+TGG 0.389334 1_1:-19475115 Msa0012770:three_prime_UTR
AATGTGATTGAATTGTTAAA+GGG 0.392252 1_1:-19475152 Msa0012770:three_prime_UTR
GGAGGAGATGGTGAAGGTGG+TGG 0.394944 1_1:-19475956 Msa0012770:CDS
GGAATAGGAGATGGAGGAGG+AGG 0.402011 1_1:-19476049 None:intergenic
AGAAAAGTTGGAAGAAAAGA+AGG 0.403281 1_1:-19475230 Msa0012770:three_prime_UTR
GGTGAAGGTGACGGTGGTGG+TGG 0.405177 1_1:-19475480 Msa0012770:three_prime_UTR
TGGAGGTGGTGGGGAAGGCG+AGG 0.413467 1_1:-19475655 Msa0012770:CDS
GGTGGGGATTTGTAATAGTA+TGG 0.418860 1_1:-19475935 Msa0012770:intron
CATATGGTGGTGGAGGTGAC+GGG 0.421446 1_1:-19475542 Msa0012770:three_prime_UTR
GGTGGTGATTTGTAAACATA+AGG 0.422684 1_1:-19475510 Msa0012770:three_prime_UTR
GCAGGAGCCTTGTGCTCATA+TGG 0.423473 1_1:-19475558 Msa0012770:three_prime_UTR
TCATATGGTGGTGGAGGTGA+CGG 0.435268 1_1:-19475543 Msa0012770:three_prime_UTR
GGTGGTGAAGGTGACGGTGG+TGG 0.442854 1_1:-19475483 Msa0012770:three_prime_UTR
GACTCTTGTAGTAGTATGGT+GGG 0.445360 1_1:-19475719 Msa0012770:intron
GGTGGTGAAGGAGTTGGTGG+TGG 0.461054 1_1:-19475600 Msa0012770:three_prime_UTR
GCCACCAATGGCAATGGCAT+TGG 0.462569 1_1:+19475368 Msa0012780:CDS
GGTGGTGGTGAAGGAGTTGG+TGG 0.464276 1_1:-19475603 Msa0012770:three_prime_UTR
CTAAGGCCAGTAGCCCCAAA+AGG 0.464699 1_1:+19475334 Msa0012780:CDS
GCTACTGGCCTTAGCAGTCA+TGG 0.465006 1_1:-19475325 Msa0012770:three_prime_UTR
GAGATGGTGAAGGTGGTGGT+GGG 0.472122 1_1:-19475952 Msa0012770:CDS
GTGGTGGAGGAGATGGTGAA+GGG 0.474012 1_1:-19476009 Msa0012770:CDS
GGTGGAGGAGATGGTGAAGG+TGG 0.479743 1_1:-19475959 Msa0012770:CDS
TGGTGGAGGAGATGGTGAAG+GGG 0.480349 1_1:-19476008 Msa0012770:CDS
GGTGGTGGAGGTGACGGGGA+TGG 0.482624 1_1:-19475537 Msa0012770:three_prime_UTR
ACATAAGGAGGTGGTGGTGA+AGG 0.491896 1_1:-19475495 Msa0012770:three_prime_UTR
GGTGGTGACTTGTACACATA+TGG 0.501996 1_1:-19475675 Msa0012770:CDS
TTGTAGTAGTATGGTGGTGG+AGG 0.503501 1_1:-19475974 Msa0012770:CDS
GGAGGTGGTGGGGAAGGCGA+GGG 0.504158 1_1:-19475654 Msa0012770:CDS
ACATATGGAGGTGGTGGGGA+AGG 0.505120 1_1:-19475660 Msa0012770:CDS
GATTTATAATAGTATGGTGG+TGG 0.505152 1_1:-19476025 Msa0012770:CDS
CTTTCTACCCATGACTGCTA+AGG 0.505874 1_1:+19475317 None:intergenic
AGATGGTGAAGGTGGTGGTG+GGG 0.510415 1_1:-19475951 Msa0012770:CDS
GGTGGTGGAGGAGATGGTGA+AGG 0.511492 1_1:-19476010 Msa0012770:CDS
ACATAAGGAGGTGGTGGTGA+AGG 0.517261 1_1:-19475612 Msa0012770:exon
TTTGAATTGGTCCTTCATGA+TGG 0.517407 1_1:+19475126 None:intergenic
TAAGGCCAGTAGCCCCAAAA+GGG 0.519856 1_1:+19475335 Msa0012780:CDS
TAGTATGGTGGTGGAGGAGA+TGG 0.521386 1_1:-19476016 Msa0012770:CDS
GGAGGTGGTGGTGAAGGAGT+TGG 0.523175 1_1:-19475606 Msa0012770:three_prime_UTR
GACTTGTAGTAGTATGGTGG+TGG 0.525053 1_1:-19475977 Msa0012770:CDS
TTATAATAGTATGGTGGTGG+AGG 0.528969 1_1:-19476022 Msa0012770:CDS
TGGGGAATAGGAGATGGAGG+AGG 0.531470 1_1:-19476052 None:intergenic
TACTTCTAAGAATATTAGGA+AGG 0.532715 1_1:+19475255 None:intergenic
CTCTTGTAGTAGTATGGTGG+GGG 0.537587 1_1:-19475717 Msa0012770:intron
GGTGGTGGTGAAGGTGACGG+TGG 0.539358 1_1:-19475486 Msa0012770:three_prime_UTR
GCCAATGCCATTGCCATTGG+TGG 0.539964 1_1:-19475369 Msa0012770:three_prime_UTR
TTGTACACATATGGAGGTGG+TGG 0.541075 1_1:-19475666 Msa0012770:CDS
TAGTATGGTGGTGGAGGAGA+TGG 0.542370 1_1:-19475968 Msa0012770:CDS
GGAGGTGGTGGTGAAGGTGA+CGG 0.545207 1_1:-19475489 Msa0012770:three_prime_UTR
ACTCTTGTAGTAGTATGGTG+GGG 0.546800 1_1:-19475718 Msa0012770:intron
CTACTGGCCTTAGCAGTCAT+GGG 0.551054 1_1:-19475324 Msa0012770:three_prime_UTR
GGACTCTTGTAGTAGTATGG+TGG 0.554508 1_1:-19475720 Msa0012770:intron
GGTGGTGGAGGAGATGGTGA+AGG 0.555801 1_1:-19475962 Msa0012770:CDS
ACTAAGAAACAAAGCATTGG+AGG 0.558221 1_1:+19475281 None:intergenic
TTGTGCTCATATGGTGGTGG+AGG 0.558789 1_1:-19475549 Msa0012770:three_prime_UTR
GTAACTAAGAAACAAAGCAT+TGG 0.559049 1_1:+19475278 None:intergenic
GCCTTGTGCTCATATGGTGG+TGG 0.559454 1_1:-19475552 Msa0012770:three_prime_UTR
GGTGACTTGTACTCATAAGC+AGG 0.562235 1_1:-19475576 Msa0012770:three_prime_UTR
GGTGGTGACTTGTATACATA+AGG 0.562735 1_1:-19475627 Msa0012770:exon
ATGGCCAATGCCATTGCCAT+TGG 0.566013 1_1:-19475372 Msa0012770:three_prime_UTR
GGGTCATAACTGGCCACCAA+TGG 0.576181 1_1:+19475356 Msa0012780:CDS
TTGTACTCGTAAGGTGGTGG+AGG 0.578283 1_1:-19475453 Msa0012770:three_prime_UTR
GACTTGTACTCGTAAGGTGG+TGG 0.579842 1_1:-19475456 Msa0012770:three_prime_UTR
ATCTGCAGCAGCAGAAACCA+TGG 0.586752 1_1:-19475412 Msa0012770:three_prime_UTR
TTGTAAACATAAGGAGGTGG+TGG 0.587029 1_1:-19475501 Msa0012770:three_prime_UTR
GGTGGTGACTTGTACTCGTA+AGG 0.592689 1_1:-19475462 Msa0012770:three_prime_UTR
GGAGATTTATAATAGTATGG+TGG 0.593272 1_1:-19476028 Msa0012770:CDS
ATATGGTGGTGGAGGTGACG+GGG 0.593718 1_1:-19475541 Msa0012770:three_prime_UTR
GGTGATTTGTAAACATAAGG+AGG 0.594722 1_1:-19475507 Msa0012770:three_prime_UTR
TAACTGGCCACCAATGGCAA+TGG 0.598534 1_1:+19475362 Msa0012780:CDS
GGAGACTTGTAGTAGTATGG+TGG 0.602875 1_1:-19475980 Msa0012770:CDS
ACTTCTAAGAATATTAGGAA+GGG 0.605550 1_1:+19475256 None:intergenic
TGTACACATATGGAGGTGGT+GGG 0.610740 1_1:-19475665 Msa0012770:CDS
TTGTATACATAAGGAGGTGG+TGG 0.617800 1_1:-19475618 Msa0012770:exon
GGAAGTCGAAATCAAAACAA+TGG 0.618171 1_1:-19475391 Msa0012770:three_prime_UTR
GTACACATATGGAGGTGGTG+GGG 0.646967 1_1:-19475664 Msa0012770:CDS
GACTTGTACACATATGGAGG+TGG 0.651696 1_1:-19475669 Msa0012770:CDS
TCCACCACCATATGAGCACA+AGG 0.652841 1_1:+19475551 Msa0012780:CDS
GACTTGTATACATAAGGAGG+TGG 0.657018 1_1:-19475621 Msa0012770:exon
GGAGCCTTGTGCTCATATGG+TGG 0.666223 1_1:-19475555 Msa0012770:three_prime_UTR
TTAAAGGGTAGCCATCATGA+AGG 0.674598 1_1:-19475137 Msa0012770:three_prime_UTR
GATTTGTAAACATAAGGAGG+TGG 0.678616 1_1:-19475504 Msa0012770:three_prime_UTR
GGTGACTTGTACTCGTAAGG+TGG 0.681989 1_1:-19475459 Msa0012770:three_prime_UTR
AAGGCCAGTAGCCCCAAAAG+GGG 0.692826 1_1:+19475336 Msa0012780:CDS
GGTGACTTGTACACATATGG+AGG 0.728444 1_1:-19475672 Msa0012770:CDS
GGTGACTTGTATACATAAGG+AGG 0.740574 1_1:-19475624 Msa0012770:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATGTGATTGAATTGTTAA+AGG - chr1_1:19475964-19475983 Msa0012770:CDS 20.0%
!! AATGTGATTGAATTGTTAAA+GGG - chr1_1:19475965-19475984 Msa0012770:CDS 20.0%
!! AACCAATTGATTATTTGAAT+TGG + chr1_1:19476007-19476026 Msa0012780:CDS 20.0%
!! TAATGTGATTGAATTGTTAA+AGG - chr1_1:19475964-19475983 Msa0012770:CDS 20.0%
!! AATGTGATTGAATTGTTAAA+GGG - chr1_1:19475965-19475984 Msa0012770:CDS 20.0%
!! AACCAATTGATTATTTGAAT+TGG + chr1_1:19476007-19476026 Msa0012780:CDS 20.0%
!! ACTTCTAAGAATATTAGGAA+GGG + chr1_1:19475864-19475883 Msa0012780:CDS 25.0%
!! TACTTCTAAGAATATTAGGA+AGG + chr1_1:19475865-19475884 Msa0012780:CDS 25.0%
!! CTTCTACTTCTAAGAATATT+AGG + chr1_1:19475869-19475888 Msa0012780:CDS 25.0%
! GACCAATTCAAATAATCAAT+TGG - chr1_1:19476002-19476021 Msa0012770:CDS 25.0%
!! ACTTCTAAGAATATTAGGAA+GGG + chr1_1:19475864-19475883 Msa0012780:CDS 25.0%
!! TACTTCTAAGAATATTAGGA+AGG + chr1_1:19475865-19475884 Msa0012780:CDS 25.0%
!! CTTCTACTTCTAAGAATATT+AGG + chr1_1:19475869-19475888 Msa0012780:CDS 25.0%
! GACCAATTCAAATAATCAAT+TGG - chr1_1:19476002-19476021 Msa0012770:CDS 25.0%
GGAGGAGATTTATAATAGTA+TGG - chr1_1:19475086-19475105 Msa0012770:three_prime_UTR 30.0%
GGAGATTTATAATAGTATGG+TGG - chr1_1:19475089-19475108 Msa0012770:three_prime_UTR 30.0%
GATTTATAATAGTATGGTGG+TGG - chr1_1:19475092-19475111 Msa0012770:three_prime_UTR 30.0%
GTAACTAAGAAACAAAGCAT+TGG + chr1_1:19475842-19475861 Msa0012780:CDS 30.0%
CTTAGAAGTAGAAGAAAAGT+TGG - chr1_1:19475875-19475894 Msa0012770:intron 30.0%
AGAAAAGTTGGAAGAAAAGA+AGG - chr1_1:19475887-19475906 Msa0012770:intron 30.0%
GGAGGAGATTTATAATAGTA+TGG - chr1_1:19475086-19475105 Msa0012770:three_prime_UTR 30.0%
GGAGATTTATAATAGTATGG+TGG - chr1_1:19475089-19475108 Msa0012770:three_prime_UTR 30.0%
GATTTATAATAGTATGGTGG+TGG - chr1_1:19475092-19475111 Msa0012770:three_prime_UTR 30.0%
GTAACTAAGAAACAAAGCAT+TGG + chr1_1:19475842-19475861 Msa0012780:CDS 30.0%
CTTAGAAGTAGAAGAAAAGT+TGG - chr1_1:19475875-19475894 Msa0012770:intron 30.0%
AGAAAAGTTGGAAGAAAAGA+AGG - chr1_1:19475887-19475906 Msa0012770:intron 30.0%
!! TTATAATAGTATGGTGGTGG+AGG - chr1_1:19475095-19475114 Msa0012770:three_prime_UTR 35.0%
GTGGATCCTTGTGTATATAT+GGG - chr1_1:19475204-19475223 Msa0012770:three_prime_UTR 35.0%
TGGATCCTTGTGTATATATG+GGG - chr1_1:19475205-19475224 Msa0012770:three_prime_UTR 35.0%
ACTTGTAGTAATATGGAGGT+GGG - chr1_1:19475257-19475276 Msa0012770:three_prime_UTR 35.0%
! GGTGGTGATTTGTAAACATA+AGG - chr1_1:19475607-19475626 Msa0012770:three_prime_UTR 35.0%
! GGTGATTTGTAAACATAAGG+AGG - chr1_1:19475610-19475629 Msa0012770:exon 35.0%
GATTTGTAAACATAAGGAGG+TGG - chr1_1:19475613-19475632 Msa0012770:exon 35.0%
!!! TGTTTTGATTTCGACTTCCA+TGG + chr1_1:19475725-19475744 Msa0012780:intron 35.0%
GGAAGTCGAAATCAAAACAA+TGG - chr1_1:19475726-19475745 Msa0012770:intron 35.0%
!! ACTAAGAAACAAAGCATTGG+AGG + chr1_1:19475839-19475858 Msa0012780:CDS 35.0%
! GGAAGAAAAGAAGGATGTTT+TGG - chr1_1:19475896-19475915 Msa0012770:intron 35.0%
TTTGAATTGGTCCTTCATGA+TGG + chr1_1:19475994-19476013 Msa0012780:CDS 35.0%
!! TTATAATAGTATGGTGGTGG+AGG - chr1_1:19475095-19475114 Msa0012770:three_prime_UTR 35.0%
GTGGATCCTTGTGTATATAT+GGG - chr1_1:19475204-19475223 Msa0012770:three_prime_UTR 35.0%
TGGATCCTTGTGTATATATG+GGG - chr1_1:19475205-19475224 Msa0012770:three_prime_UTR 35.0%
ACTTGTAGTAATATGGAGGT+GGG - chr1_1:19475257-19475276 Msa0012770:three_prime_UTR 35.0%
! GGTGGTGATTTGTAAACATA+AGG - chr1_1:19475607-19475626 Msa0012770:three_prime_UTR 35.0%
! GGTGATTTGTAAACATAAGG+AGG - chr1_1:19475610-19475629 Msa0012770:exon 35.0%
GATTTGTAAACATAAGGAGG+TGG - chr1_1:19475613-19475632 Msa0012770:exon 35.0%
!!! TGTTTTGATTTCGACTTCCA+TGG + chr1_1:19475725-19475744 Msa0012780:intron 35.0%
GGAAGTCGAAATCAAAACAA+TGG - chr1_1:19475726-19475745 Msa0012770:intron 35.0%
!! ACTAAGAAACAAAGCATTGG+AGG + chr1_1:19475839-19475858 Msa0012780:CDS 35.0%
! GGAAGAAAAGAAGGATGTTT+TGG - chr1_1:19475896-19475915 Msa0012770:intron 35.0%
TTTGAATTGGTCCTTCATGA+TGG + chr1_1:19475994-19476013 Msa0012780:CDS 35.0%
GGTGGGGATTTGTAATAGTA+TGG - chr1_1:19475182-19475201 Msa0012770:three_prime_UTR 40.0%
GGGGATTTGTAATAGTATGG+TGG - chr1_1:19475185-19475204 Msa0012770:three_prime_UTR 40.0%
GGTGGATCCTTGTGTATATA+TGG - chr1_1:19475203-19475222 Msa0012770:three_prime_UTR 40.0%
GGATCCTTGTGTATATATGG+GGG - chr1_1:19475206-19475225 Msa0012770:three_prime_UTR 40.0%
TGGGGAGACTTGTAGTAATA+TGG - chr1_1:19475250-19475269 Msa0012770:three_prime_UTR 40.0%
GGAGACTTGTAGTAATATGG+AGG - chr1_1:19475253-19475272 Msa0012770:three_prime_UTR 40.0%
GACTTGTAGTAATATGGAGG+TGG - chr1_1:19475256-19475275 Msa0012770:three_prime_UTR 40.0%
CTTGTAGTAATATGGAGGTG+GGG - chr1_1:19475258-19475277 Msa0012770:three_prime_UTR 40.0%
TTGTAGTAATATGGAGGTGG+GGG - chr1_1:19475259-19475278 Msa0012770:three_prime_UTR 40.0%
GGTGGAGACTTGTAATAGTA+TGG - chr1_1:19475298-19475317 Msa0012770:three_prime_UTR 40.0%
GGAGACTTGTAATAGTATGG+TGG - chr1_1:19475301-19475320 Msa0012770:three_prime_UTR 40.0%
GACTTGTAATAGTATGGTGG+TGG - chr1_1:19475304-19475323 Msa0012770:three_prime_UTR 40.0%
!! TTGTAATAGTATGGTGGTGG+AGG - chr1_1:19475307-19475326 Msa0012770:three_prime_UTR 40.0%
!! TGTAATAGTATGGTGGTGGA+GGG - chr1_1:19475308-19475327 Msa0012770:three_prime_UTR 40.0%
GGAGGAGATTTGTAGTAGTA+AGG - chr1_1:19475346-19475365 Msa0012770:three_prime_UTR 40.0%
GGAGATTTGTAGTAGTAAGG+TGG - chr1_1:19475349-19475368 Msa0012770:three_prime_UTR 40.0%
GATTTGTAGTAGTAAGGTGG+TGG - chr1_1:19475352-19475371 Msa0012770:three_prime_UTR 40.0%
GACTCTTGTAGTAGTATGGT+GGG - chr1_1:19475398-19475417 Msa0012770:three_prime_UTR 40.0%
ACTCTTGTAGTAGTATGGTG+GGG - chr1_1:19475399-19475418 Msa0012770:three_prime_UTR 40.0%
! GGTGGTGACTTGTATACATA+AGG - chr1_1:19475490-19475509 Msa0012770:three_prime_UTR 40.0%
! GGTGACTTGTATACATAAGG+AGG - chr1_1:19475493-19475512 Msa0012770:three_prime_UTR 40.0%
GACTTGTATACATAAGGAGG+TGG - chr1_1:19475496-19475515 Msa0012770:three_prime_UTR 40.0%
TTGTATACATAAGGAGGTGG+TGG - chr1_1:19475499-19475518 Msa0012770:three_prime_UTR 40.0%
TTGTAAACATAAGGAGGTGG+TGG - chr1_1:19475616-19475635 Msa0012770:exon 40.0%
TTAAAGGGTAGCCATCATGA+AGG - chr1_1:19475980-19475999 Msa0012770:CDS 40.0%
GGTGGGGATTTGTAATAGTA+TGG - chr1_1:19475182-19475201 Msa0012770:three_prime_UTR 40.0%
GGGGATTTGTAATAGTATGG+TGG - chr1_1:19475185-19475204 Msa0012770:three_prime_UTR 40.0%
GGTGGATCCTTGTGTATATA+TGG - chr1_1:19475203-19475222 Msa0012770:three_prime_UTR 40.0%
GGATCCTTGTGTATATATGG+GGG - chr1_1:19475206-19475225 Msa0012770:three_prime_UTR 40.0%
TGGGGAGACTTGTAGTAATA+TGG - chr1_1:19475250-19475269 Msa0012770:three_prime_UTR 40.0%
GGAGACTTGTAGTAATATGG+AGG - chr1_1:19475253-19475272 Msa0012770:three_prime_UTR 40.0%
GACTTGTAGTAATATGGAGG+TGG - chr1_1:19475256-19475275 Msa0012770:three_prime_UTR 40.0%
CTTGTAGTAATATGGAGGTG+GGG - chr1_1:19475258-19475277 Msa0012770:three_prime_UTR 40.0%
TTGTAGTAATATGGAGGTGG+GGG - chr1_1:19475259-19475278 Msa0012770:three_prime_UTR 40.0%
GGTGGAGACTTGTAATAGTA+TGG - chr1_1:19475298-19475317 Msa0012770:three_prime_UTR 40.0%
GGAGACTTGTAATAGTATGG+TGG - chr1_1:19475301-19475320 Msa0012770:three_prime_UTR 40.0%
GACTTGTAATAGTATGGTGG+TGG - chr1_1:19475304-19475323 Msa0012770:three_prime_UTR 40.0%
!! TTGTAATAGTATGGTGGTGG+AGG - chr1_1:19475307-19475326 Msa0012770:three_prime_UTR 40.0%
!! TGTAATAGTATGGTGGTGGA+GGG - chr1_1:19475308-19475327 Msa0012770:three_prime_UTR 40.0%
GGAGGAGATTTGTAGTAGTA+AGG - chr1_1:19475346-19475365 Msa0012770:three_prime_UTR 40.0%
GGAGATTTGTAGTAGTAAGG+TGG - chr1_1:19475349-19475368 Msa0012770:three_prime_UTR 40.0%
GATTTGTAGTAGTAAGGTGG+TGG - chr1_1:19475352-19475371 Msa0012770:three_prime_UTR 40.0%
GACTCTTGTAGTAGTATGGT+GGG - chr1_1:19475398-19475417 Msa0012770:three_prime_UTR 40.0%
ACTCTTGTAGTAGTATGGTG+GGG - chr1_1:19475399-19475418 Msa0012770:three_prime_UTR 40.0%
! GGTGGTGACTTGTATACATA+AGG - chr1_1:19475490-19475509 Msa0012770:three_prime_UTR 40.0%
! GGTGACTTGTATACATAAGG+AGG - chr1_1:19475493-19475512 Msa0012770:three_prime_UTR 40.0%
GACTTGTATACATAAGGAGG+TGG - chr1_1:19475496-19475515 Msa0012770:three_prime_UTR 40.0%
TTGTATACATAAGGAGGTGG+TGG - chr1_1:19475499-19475518 Msa0012770:three_prime_UTR 40.0%
TTGTAAACATAAGGAGGTGG+TGG - chr1_1:19475616-19475635 Msa0012770:exon 40.0%
TTAAAGGGTAGCCATCATGA+AGG - chr1_1:19475980-19475999 Msa0012770:CDS 40.0%
GGAGACTTGTAGTAGTATGG+TGG - chr1_1:19475137-19475156 Msa0012770:three_prime_UTR 45.0%
GACTTGTAGTAGTATGGTGG+TGG - chr1_1:19475140-19475159 Msa0012770:three_prime_UTR 45.0%
!! TTGTAGTAGTATGGTGGTGG+AGG - chr1_1:19475143-19475162 Msa0012770:three_prime_UTR 45.0%
TCCTTGTGTATATATGGGGG+TGG - chr1_1:19475209-19475228 Msa0012770:three_prime_UTR 45.0%
TCCACCCCCATATATACACA+AGG + chr1_1:19475213-19475232 None:intergenic 45.0%
TTGTGTATATATGGGGGTGG+AGG - chr1_1:19475212-19475231 Msa0012770:three_prime_UTR 45.0%
TGTGTATATATGGGGGTGGA+GGG - chr1_1:19475213-19475232 Msa0012770:three_prime_UTR 45.0%
!! GTAATAGTATGGTGGTGGAG+GGG - chr1_1:19475309-19475328 Msa0012770:three_prime_UTR 45.0%
! TTGTAGTAGTAAGGTGGTGG+AGG - chr1_1:19475355-19475374 Msa0012770:three_prime_UTR 45.0%
GGAGGACTCTTGTAGTAGTA+TGG - chr1_1:19475394-19475413 Msa0012770:three_prime_UTR 45.0%
GGACTCTTGTAGTAGTATGG+TGG - chr1_1:19475397-19475416 Msa0012770:three_prime_UTR 45.0%
CTCTTGTAGTAGTATGGTGG+GGG - chr1_1:19475400-19475419 Msa0012770:three_prime_UTR 45.0%
! GGTGGTGACTTGTACACATA+TGG - chr1_1:19475442-19475461 Msa0012770:three_prime_UTR 45.0%
! GGTGACTTGTACACATATGG+AGG - chr1_1:19475445-19475464 Msa0012770:three_prime_UTR 45.0%
GACTTGTACACATATGGAGG+TGG - chr1_1:19475448-19475467 Msa0012770:three_prime_UTR 45.0%
TTGTACACATATGGAGGTGG+TGG - chr1_1:19475451-19475470 Msa0012770:three_prime_UTR 45.0%
TGTACACATATGGAGGTGGT+GGG - chr1_1:19475452-19475471 Msa0012770:three_prime_UTR 45.0%
! GGTGACTTGTACTCATAAGC+AGG - chr1_1:19475541-19475560 Msa0012770:three_prime_UTR 45.0%
CTTTCTACCCATGACTGCTA+AGG + chr1_1:19475803-19475822 Msa0012780:intron 45.0%
TAAATCTCCTCCTCCTCCAT+GGG + chr1_1:19475078-19475097 None:intergenic 45.0%
ATAAATCTCCTCCTCCTCCA+TGG + chr1_1:19475079-19475098 None:intergenic 45.0%
GGAGACTTGTAGTAGTATGG+TGG - chr1_1:19475137-19475156 Msa0012770:three_prime_UTR 45.0%
GACTTGTAGTAGTATGGTGG+TGG - chr1_1:19475140-19475159 Msa0012770:three_prime_UTR 45.0%
!! TTGTAGTAGTATGGTGGTGG+AGG - chr1_1:19475143-19475162 Msa0012770:three_prime_UTR 45.0%
TCCTTGTGTATATATGGGGG+TGG - chr1_1:19475209-19475228 Msa0012770:three_prime_UTR 45.0%
TCCACCCCCATATATACACA+AGG + chr1_1:19475213-19475232 None:intergenic 45.0%
TTGTGTATATATGGGGGTGG+AGG - chr1_1:19475212-19475231 Msa0012770:three_prime_UTR 45.0%
TGTGTATATATGGGGGTGGA+GGG - chr1_1:19475213-19475232 Msa0012770:three_prime_UTR 45.0%
!! GTAATAGTATGGTGGTGGAG+GGG - chr1_1:19475309-19475328 Msa0012770:three_prime_UTR 45.0%
! TTGTAGTAGTAAGGTGGTGG+AGG - chr1_1:19475355-19475374 Msa0012770:three_prime_UTR 45.0%
GGAGGACTCTTGTAGTAGTA+TGG - chr1_1:19475394-19475413 Msa0012770:three_prime_UTR 45.0%
GGACTCTTGTAGTAGTATGG+TGG - chr1_1:19475397-19475416 Msa0012770:three_prime_UTR 45.0%
CTCTTGTAGTAGTATGGTGG+GGG - chr1_1:19475400-19475419 Msa0012770:three_prime_UTR 45.0%
! GGTGGTGACTTGTACACATA+TGG - chr1_1:19475442-19475461 Msa0012770:three_prime_UTR 45.0%
! GGTGACTTGTACACATATGG+AGG - chr1_1:19475445-19475464 Msa0012770:three_prime_UTR 45.0%
GACTTGTACACATATGGAGG+TGG - chr1_1:19475448-19475467 Msa0012770:three_prime_UTR 45.0%
TTGTACACATATGGAGGTGG+TGG - chr1_1:19475451-19475470 Msa0012770:three_prime_UTR 45.0%
TGTACACATATGGAGGTGGT+GGG - chr1_1:19475452-19475471 Msa0012770:three_prime_UTR 45.0%
! GGTGACTTGTACTCATAAGC+AGG - chr1_1:19475541-19475560 Msa0012770:three_prime_UTR 45.0%
CTTTCTACCCATGACTGCTA+AGG + chr1_1:19475803-19475822 Msa0012780:intron 45.0%
!! TAGTATGGTGGTGGAGGAGA+TGG - chr1_1:19475101-19475120 Msa0012770:three_prime_UTR 50.0%
GGGGGAGACTTGTAGTAGTA+TGG - chr1_1:19475134-19475153 Msa0012770:three_prime_UTR 50.0%
!! TAGTATGGTGGTGGAGGAGA+TGG - chr1_1:19475101-19475120 Msa0012770:three_prime_UTR 50.0%
GTGTATATATGGGGGTGGAG+GGG - chr1_1:19475214-19475233 Msa0012770:three_prime_UTR 50.0%
TAATATGGAGGTGGGGGTGA+TGG - chr1_1:19475265-19475284 Msa0012770:three_prime_UTR 50.0%
!! TAGTAAGGTGGTGGAGGTGA+AGG - chr1_1:19475361-19475380 Msa0012770:three_prime_UTR 50.0%
! TTGTAGTAGTATGGTGGGGG+TGG - chr1_1:19475403-19475422 Msa0012770:three_prime_UTR 50.0%
! TGTAGTAGTATGGTGGGGGT+GGG - chr1_1:19475404-19475423 Msa0012770:three_prime_UTR 50.0%
GTACACATATGGAGGTGGTG+GGG - chr1_1:19475453-19475472 Msa0012770:three_prime_UTR 50.0%
! ACATAAGGAGGTGGTGGTGA+AGG - chr1_1:19475505-19475524 Msa0012770:three_prime_UTR 50.0%
TCCACCACCATATGAGCACA+AGG + chr1_1:19475569-19475588 Msa0012780:CDS 50.0%
!! TTGTGCTCATATGGTGGTGG+AGG - chr1_1:19475568-19475587 Msa0012770:three_prime_UTR 50.0%
!! TCATATGGTGGTGGAGGTGA+CGG - chr1_1:19475574-19475593 Msa0012770:three_prime_UTR 50.0%
! ACATAAGGAGGTGGTGGTGA+AGG - chr1_1:19475505-19475524 Msa0012770:three_prime_UTR 50.0%
! GGTGGTGACTTGTACTCGTA+AGG - chr1_1:19475655-19475674 Msa0012770:CDS 50.0%
! GGTGACTTGTACTCGTAAGG+TGG - chr1_1:19475658-19475677 Msa0012770:CDS 50.0%
GACTTGTACTCGTAAGGTGG+TGG - chr1_1:19475661-19475680 Msa0012770:CDS 50.0%
! TTGTACTCGTAAGGTGGTGG+AGG - chr1_1:19475664-19475683 Msa0012770:CDS 50.0%
ATCTGCAGCAGCAGAAACCA+TGG - chr1_1:19475705-19475724 Msa0012770:CDS 50.0%
ATGGCCAATGCCATTGCCAT+TGG - chr1_1:19475745-19475764 Msa0012770:intron 50.0%
TAACTGGCCACCAATGGCAA+TGG + chr1_1:19475758-19475777 Msa0012780:intron 50.0%
! TGGCCAGTTATGACCCCTTT+TGG - chr1_1:19475768-19475787 Msa0012770:intron 50.0%
! GGCCAGTTATGACCCCTTTT+GGG - chr1_1:19475769-19475788 Msa0012770:intron 50.0%
! GCCAGTTATGACCCCTTTTG+GGG - chr1_1:19475770-19475789 Msa0012770:intron 50.0%
TAAGGCCAGTAGCCCCAAAA+GGG + chr1_1:19475785-19475804 Msa0012780:intron 50.0%
!! CTACTGGCCTTAGCAGTCAT+GGG - chr1_1:19475793-19475812 Msa0012770:intron 50.0%
!! TAGTATGGTGGTGGAGGAGA+TGG - chr1_1:19475101-19475120 Msa0012770:three_prime_UTR 50.0%
GGGGGAGACTTGTAGTAGTA+TGG - chr1_1:19475134-19475153 Msa0012770:three_prime_UTR 50.0%
!! TAGTATGGTGGTGGAGGAGA+TGG - chr1_1:19475101-19475120 Msa0012770:three_prime_UTR 50.0%
GTGTATATATGGGGGTGGAG+GGG - chr1_1:19475214-19475233 Msa0012770:three_prime_UTR 50.0%
TAATATGGAGGTGGGGGTGA+TGG - chr1_1:19475265-19475284 Msa0012770:three_prime_UTR 50.0%
!! TAGTAAGGTGGTGGAGGTGA+AGG - chr1_1:19475361-19475380 Msa0012770:three_prime_UTR 50.0%
! TTGTAGTAGTATGGTGGGGG+TGG - chr1_1:19475403-19475422 Msa0012770:three_prime_UTR 50.0%
! TGTAGTAGTATGGTGGGGGT+GGG - chr1_1:19475404-19475423 Msa0012770:three_prime_UTR 50.0%
GTACACATATGGAGGTGGTG+GGG - chr1_1:19475453-19475472 Msa0012770:three_prime_UTR 50.0%
! ACATAAGGAGGTGGTGGTGA+AGG - chr1_1:19475505-19475524 Msa0012770:three_prime_UTR 50.0%
TCCACCACCATATGAGCACA+AGG + chr1_1:19475569-19475588 Msa0012780:CDS 50.0%
!! TTGTGCTCATATGGTGGTGG+AGG - chr1_1:19475568-19475587 Msa0012770:three_prime_UTR 50.0%
!! TCATATGGTGGTGGAGGTGA+CGG - chr1_1:19475574-19475593 Msa0012770:three_prime_UTR 50.0%
! ACATAAGGAGGTGGTGGTGA+AGG - chr1_1:19475505-19475524 Msa0012770:three_prime_UTR 50.0%
! GGTGGTGACTTGTACTCGTA+AGG - chr1_1:19475655-19475674 Msa0012770:CDS 50.0%
! GGTGACTTGTACTCGTAAGG+TGG - chr1_1:19475658-19475677 Msa0012770:CDS 50.0%
GACTTGTACTCGTAAGGTGG+TGG - chr1_1:19475661-19475680 Msa0012770:CDS 50.0%
! TTGTACTCGTAAGGTGGTGG+AGG - chr1_1:19475664-19475683 Msa0012770:CDS 50.0%
ATCTGCAGCAGCAGAAACCA+TGG - chr1_1:19475705-19475724 Msa0012770:CDS 50.0%
ATGGCCAATGCCATTGCCAT+TGG - chr1_1:19475745-19475764 Msa0012770:intron 50.0%
TAACTGGCCACCAATGGCAA+TGG + chr1_1:19475758-19475777 Msa0012780:intron 50.0%
! TGGCCAGTTATGACCCCTTT+TGG - chr1_1:19475768-19475787 Msa0012770:intron 50.0%
! GGCCAGTTATGACCCCTTTT+GGG - chr1_1:19475769-19475788 Msa0012770:intron 50.0%
! GCCAGTTATGACCCCTTTTG+GGG - chr1_1:19475770-19475789 Msa0012770:intron 50.0%
TAAGGCCAGTAGCCCCAAAA+GGG + chr1_1:19475785-19475804 Msa0012780:intron 50.0%
!! CTACTGGCCTTAGCAGTCAT+GGG - chr1_1:19475793-19475812 Msa0012770:intron 50.0%
! GTGGTGGAGGAGATGGTGAA+GGG - chr1_1:19475108-19475127 Msa0012770:three_prime_UTR 55.0%
TGGTGGAGGAGATGGTGAAG+GGG - chr1_1:19475109-19475128 Msa0012770:three_prime_UTR 55.0%
! GAGATGGTGAAGGTGGTGGT+GGG - chr1_1:19475165-19475184 Msa0012770:three_prime_UTR 55.0%
! AGATGGTGAAGGTGGTGGTG+GGG - chr1_1:19475166-19475185 Msa0012770:three_prime_UTR 55.0%
ATATATGGGGGTGGAGGGGA+TGG - chr1_1:19475218-19475237 Msa0012770:three_prime_UTR 55.0%
!! TAGTATGGTGGTGGAGGGGA+AGG - chr1_1:19475313-19475332 Msa0012770:three_prime_UTR 55.0%
! GTAGTAGTATGGTGGGGGTG+GGG - chr1_1:19475405-19475424 Msa0012770:three_prime_UTR 55.0%
!! ACATATGGAGGTGGTGGGGA+AGG - chr1_1:19475457-19475476 Msa0012770:three_prime_UTR 55.0%
! GCAGGAGCCTTGTGCTCATA+TGG - chr1_1:19475559-19475578 Msa0012770:three_prime_UTR 55.0%
! GGAGCCTTGTGCTCATATGG+TGG - chr1_1:19475562-19475581 Msa0012770:three_prime_UTR 55.0%
GCCTTGTGCTCATATGGTGG+TGG - chr1_1:19475565-19475584 Msa0012770:three_prime_UTR 55.0%
!! CATATGGTGGTGGAGGTGAC+GGG - chr1_1:19475575-19475594 Msa0012770:three_prime_UTR 55.0%
!! ATATGGTGGTGGAGGTGACG+GGG - chr1_1:19475576-19475595 Msa0012770:three_prime_UTR 55.0%
GCCAATGCCATTGCCATTGG+TGG - chr1_1:19475748-19475767 Msa0012770:intron 55.0%
GCCACCAATGGCAATGGCAT+TGG + chr1_1:19475752-19475771 Msa0012780:intron 55.0%
GGGTCATAACTGGCCACCAA+TGG + chr1_1:19475764-19475783 Msa0012780:intron 55.0%
GCCCCAAAAGGGGTCATAAC+TGG + chr1_1:19475774-19475793 Msa0012780:intron 55.0%
!!! ATGACCCCTTTTGGGGCTAC+TGG - chr1_1:19475777-19475796 Msa0012770:intron 55.0%
AAGGCCAGTAGCCCCAAAAG+GGG + chr1_1:19475784-19475803 Msa0012780:intron 55.0%
CTAAGGCCAGTAGCCCCAAA+AGG + chr1_1:19475786-19475805 Msa0012780:intron 55.0%
!! GCTACTGGCCTTAGCAGTCA+TGG - chr1_1:19475792-19475811 Msa0012770:intron 55.0%
! GTGGTGGAGGAGATGGTGAA+GGG - chr1_1:19475108-19475127 Msa0012770:three_prime_UTR 55.0%
TGGTGGAGGAGATGGTGAAG+GGG - chr1_1:19475109-19475128 Msa0012770:three_prime_UTR 55.0%
! GAGATGGTGAAGGTGGTGGT+GGG - chr1_1:19475165-19475184 Msa0012770:three_prime_UTR 55.0%
! AGATGGTGAAGGTGGTGGTG+GGG - chr1_1:19475166-19475185 Msa0012770:three_prime_UTR 55.0%
ATATATGGGGGTGGAGGGGA+TGG - chr1_1:19475218-19475237 Msa0012770:three_prime_UTR 55.0%
!! TAGTATGGTGGTGGAGGGGA+AGG - chr1_1:19475313-19475332 Msa0012770:three_prime_UTR 55.0%
! GTAGTAGTATGGTGGGGGTG+GGG - chr1_1:19475405-19475424 Msa0012770:three_prime_UTR 55.0%
!! ACATATGGAGGTGGTGGGGA+AGG - chr1_1:19475457-19475476 Msa0012770:three_prime_UTR 55.0%
! GCAGGAGCCTTGTGCTCATA+TGG - chr1_1:19475559-19475578 Msa0012770:three_prime_UTR 55.0%
! GGAGCCTTGTGCTCATATGG+TGG - chr1_1:19475562-19475581 Msa0012770:three_prime_UTR 55.0%
GCCTTGTGCTCATATGGTGG+TGG - chr1_1:19475565-19475584 Msa0012770:three_prime_UTR 55.0%
!! CATATGGTGGTGGAGGTGAC+GGG - chr1_1:19475575-19475594 Msa0012770:three_prime_UTR 55.0%
!! ATATGGTGGTGGAGGTGACG+GGG - chr1_1:19475576-19475595 Msa0012770:three_prime_UTR 55.0%
GCCAATGCCATTGCCATTGG+TGG - chr1_1:19475748-19475767 Msa0012770:intron 55.0%
GCCACCAATGGCAATGGCAT+TGG + chr1_1:19475752-19475771 Msa0012780:intron 55.0%
GGGTCATAACTGGCCACCAA+TGG + chr1_1:19475764-19475783 Msa0012780:intron 55.0%
GCCCCAAAAGGGGTCATAAC+TGG + chr1_1:19475774-19475793 Msa0012780:intron 55.0%
!!! ATGACCCCTTTTGGGGCTAC+TGG - chr1_1:19475777-19475796 Msa0012770:intron 55.0%
AAGGCCAGTAGCCCCAAAAG+GGG + chr1_1:19475784-19475803 Msa0012780:intron 55.0%
CTAAGGCCAGTAGCCCCAAA+AGG + chr1_1:19475786-19475805 Msa0012780:intron 55.0%
!! GCTACTGGCCTTAGCAGTCA+TGG - chr1_1:19475792-19475811 Msa0012770:intron 55.0%
!! GGTGGTGGAGGAGATGGTGA+AGG - chr1_1:19475107-19475126 Msa0012770:three_prime_UTR 60.0%
GGTGGAGGAGATGGTGAAGG+GGG - chr1_1:19475110-19475129 Msa0012770:three_prime_UTR 60.0%
GAGGAGATGGTGAAGGGGGT+GGG - chr1_1:19475114-19475133 Msa0012770:three_prime_UTR 60.0%
AGGAGATGGTGAAGGGGGTG+GGG - chr1_1:19475115-19475134 Msa0012770:three_prime_UTR 60.0%
!! GGTGGTGGAGGAGATGGTGA+AGG - chr1_1:19475107-19475126 Msa0012770:three_prime_UTR 60.0%
GGTGGAGGAGATGGTGAAGG+TGG - chr1_1:19475110-19475129 Msa0012770:three_prime_UTR 60.0%
GGAGGAGATGGTGAAGGTGG+TGG - chr1_1:19475161-19475180 Msa0012770:three_prime_UTR 60.0%
! GGAGATGGTGAAGGTGGTGG+TGG - chr1_1:19475164-19475183 Msa0012770:three_prime_UTR 60.0%
!! GGTGATGGAGATGGTGGTGG+TGG - chr1_1:19475280-19475299 Msa0012770:three_prime_UTR 60.0%
!! GGTGGTGGAGGTGAAGGAGA+AGG - chr1_1:19475367-19475386 Msa0012770:three_prime_UTR 60.0%
GGTGGAGGTGAAGGAGAAGG+TGG - chr1_1:19475370-19475389 Msa0012770:three_prime_UTR 60.0%
GGAGGTGAAGGAGAAGGTGG+TGG - chr1_1:19475373-19475392 Msa0012770:three_prime_UTR 60.0%
! GGTGAAGGAGAAGGTGGTGG+AGG - chr1_1:19475376-19475395 Msa0012770:three_prime_UTR 60.0%
! TAGTATGGTGGGGGTGGGGA+AGG - chr1_1:19475409-19475428 Msa0012770:three_prime_UTR 60.0%
! GGAGGTGGTGGTGAAGGAGT+TGG - chr1_1:19475511-19475530 Msa0012770:three_prime_UTR 60.0%
! GGTGGTGGTGAAGGAGTTGG+TGG - chr1_1:19475514-19475533 Msa0012770:three_prime_UTR 60.0%
!! GGTGGTGAAGGAGTTGGTGG+TGG - chr1_1:19475517-19475536 Msa0012770:three_prime_UTR 60.0%
!! GGTGAAGGAGTTGGTGGTGG+TGG - chr1_1:19475520-19475539 Msa0012770:three_prime_UTR 60.0%
! GGAGGTGGTGGTGAAGGTGA+CGG - chr1_1:19475628-19475647 Msa0012770:exon 60.0%
!! GGTGGTGGAGGAGATGGTGA+AGG - chr1_1:19475107-19475126 Msa0012770:three_prime_UTR 60.0%
GGTGGAGGAGATGGTGAAGG+GGG - chr1_1:19475110-19475129 Msa0012770:three_prime_UTR 60.0%
GAGGAGATGGTGAAGGGGGT+GGG - chr1_1:19475114-19475133 Msa0012770:three_prime_UTR 60.0%
AGGAGATGGTGAAGGGGGTG+GGG - chr1_1:19475115-19475134 Msa0012770:three_prime_UTR 60.0%
!! GGTGGTGGAGGAGATGGTGA+AGG - chr1_1:19475107-19475126 Msa0012770:three_prime_UTR 60.0%
GGTGGAGGAGATGGTGAAGG+TGG - chr1_1:19475110-19475129 Msa0012770:three_prime_UTR 60.0%
GGAGGAGATGGTGAAGGTGG+TGG - chr1_1:19475161-19475180 Msa0012770:three_prime_UTR 60.0%
! GGAGATGGTGAAGGTGGTGG+TGG - chr1_1:19475164-19475183 Msa0012770:three_prime_UTR 60.0%
!! GGTGATGGAGATGGTGGTGG+TGG - chr1_1:19475280-19475299 Msa0012770:three_prime_UTR 60.0%
!! GGTGGTGGAGGTGAAGGAGA+AGG - chr1_1:19475367-19475386 Msa0012770:three_prime_UTR 60.0%
GGTGGAGGTGAAGGAGAAGG+TGG - chr1_1:19475370-19475389 Msa0012770:three_prime_UTR 60.0%
GGAGGTGAAGGAGAAGGTGG+TGG - chr1_1:19475373-19475392 Msa0012770:three_prime_UTR 60.0%
! GGTGAAGGAGAAGGTGGTGG+AGG - chr1_1:19475376-19475395 Msa0012770:three_prime_UTR 60.0%
! TAGTATGGTGGGGGTGGGGA+AGG - chr1_1:19475409-19475428 Msa0012770:three_prime_UTR 60.0%
! GGAGGTGGTGGTGAAGGAGT+TGG - chr1_1:19475511-19475530 Msa0012770:three_prime_UTR 60.0%
! GGTGGTGGTGAAGGAGTTGG+TGG - chr1_1:19475514-19475533 Msa0012770:three_prime_UTR 60.0%
!! GGTGGTGAAGGAGTTGGTGG+TGG - chr1_1:19475517-19475536 Msa0012770:three_prime_UTR 60.0%
!! GGTGAAGGAGTTGGTGGTGG+TGG - chr1_1:19475520-19475539 Msa0012770:three_prime_UTR 60.0%
! GGAGGTGGTGGTGAAGGTGA+CGG - chr1_1:19475628-19475647 Msa0012770:exon 60.0%
GGAGGAGATGGTGAAGGGGG+TGG - chr1_1:19475113-19475132 Msa0012770:three_prime_UTR 65.0%
GGAGATGGTGAAGGGGGTGG+GGG - chr1_1:19475116-19475135 Msa0012770:three_prime_UTR 65.0%
GAGGGGATGGTGAGGGTGGT+GGG - chr1_1:19475231-19475250 Msa0012770:three_prime_UTR 65.0%
AGGGGATGGTGAGGGTGGTG+GGG - chr1_1:19475232-19475251 Msa0012770:three_prime_UTR 65.0%
!! GGAGGTGGGGGTGATGGAGA+TGG - chr1_1:19475271-19475290 Msa0012770:three_prime_UTR 65.0%
!! GGTGGGGGTGATGGAGATGG+TGG - chr1_1:19475274-19475293 Msa0012770:three_prime_UTR 65.0%
!! GGGGGTGATGGAGATGGTGG+TGG - chr1_1:19475277-19475296 Msa0012770:three_prime_UTR 65.0%
!! TGGTGGTGGAGGGGAAGGTG+AGG - chr1_1:19475318-19475337 Msa0012770:three_prime_UTR 65.0%
!! GGTGGTGGAGGGGAAGGTGA+GGG - chr1_1:19475319-19475338 Msa0012770:three_prime_UTR 65.0%
! GGTGGTGGTGAAGGTGACGG+TGG - chr1_1:19475631-19475650 Msa0012770:CDS 65.0%
! GGTGGTGAAGGTGACGGTGG+TGG - chr1_1:19475634-19475653 Msa0012770:CDS 65.0%
! GGTGAAGGTGACGGTGGTGG+TGG - chr1_1:19475637-19475656 Msa0012770:CDS 65.0%
GGAGGAGATGGTGAAGGGGG+TGG - chr1_1:19475113-19475132 Msa0012770:three_prime_UTR 65.0%
GGAGATGGTGAAGGGGGTGG+GGG - chr1_1:19475116-19475135 Msa0012770:three_prime_UTR 65.0%
GAGGGGATGGTGAGGGTGGT+GGG - chr1_1:19475231-19475250 Msa0012770:three_prime_UTR 65.0%
AGGGGATGGTGAGGGTGGTG+GGG - chr1_1:19475232-19475251 Msa0012770:three_prime_UTR 65.0%
!! GGAGGTGGGGGTGATGGAGA+TGG - chr1_1:19475271-19475290 Msa0012770:three_prime_UTR 65.0%
!! GGTGGGGGTGATGGAGATGG+TGG - chr1_1:19475274-19475293 Msa0012770:three_prime_UTR 65.0%
!! GGGGGTGATGGAGATGGTGG+TGG - chr1_1:19475277-19475296 Msa0012770:three_prime_UTR 65.0%
!! TGGTGGTGGAGGGGAAGGTG+AGG - chr1_1:19475318-19475337 Msa0012770:three_prime_UTR 65.0%
!! GGTGGTGGAGGGGAAGGTGA+GGG - chr1_1:19475319-19475338 Msa0012770:three_prime_UTR 65.0%
! GGTGGTGGTGAAGGTGACGG+TGG - chr1_1:19475631-19475650 Msa0012770:CDS 65.0%
! GGTGGTGAAGGTGACGGTGG+TGG - chr1_1:19475634-19475653 Msa0012770:CDS 65.0%
! GGTGAAGGTGACGGTGGTGG+TGG - chr1_1:19475637-19475656 Msa0012770:CDS 65.0%
TGGGGGTGGAGGGGATGGTG+AGG - chr1_1:19475223-19475242 Msa0012770:three_prime_UTR 70.0%
GGGGGTGGAGGGGATGGTGA+GGG - chr1_1:19475224-19475243 Msa0012770:three_prime_UTR 70.0%
GGTGGAGGGGATGGTGAGGG+TGG - chr1_1:19475227-19475246 Msa0012770:three_prime_UTR 70.0%
GGAGGGGATGGTGAGGGTGG+TGG - chr1_1:19475230-19475249 Msa0012770:three_prime_UTR 70.0%
GGTGGAGGGGAAGGTGAGGG+TGG - chr1_1:19475322-19475341 Msa0012770:three_prime_UTR 70.0%
GGAGGGGAAGGTGAGGGTGG+CGG - chr1_1:19475325-19475344 Msa0012770:three_prime_UTR 70.0%
TGGTGGGGGTGGGGAAGGTG+AGG - chr1_1:19475414-19475433 Msa0012770:three_prime_UTR 70.0%
GGTGGGGGTGGGGAAGGTGA+GGG - chr1_1:19475415-19475434 Msa0012770:three_prime_UTR 70.0%
GGTGGGGAAGGTGAGGGTGG+TGG - chr1_1:19475421-19475440 Msa0012770:three_prime_UTR 70.0%
! GGGGAAGGTGAGGGTGGTGG+TGG - chr1_1:19475424-19475443 Msa0012770:three_prime_UTR 70.0%
!! TGGAGGTGGTGGGGAAGGCG+AGG - chr1_1:19475462-19475481 Msa0012770:three_prime_UTR 70.0%
!! GGAGGTGGTGGGGAAGGCGA+GGG - chr1_1:19475463-19475482 Msa0012770:three_prime_UTR 70.0%
!! GGTGGTGGAGGTGACGGGGA+TGG - chr1_1:19475580-19475599 Msa0012770:three_prime_UTR 70.0%
!! GGTGGAGGTGACGGGGATGG+AGG - chr1_1:19475583-19475602 Msa0012770:three_prime_UTR 70.0%
!! GGAGGTGACGGGGATGGAGG+AGG - chr1_1:19475586-19475605 Msa0012770:three_prime_UTR 70.0%
!! GGTGACGGGGATGGAGGAGG+TGG - chr1_1:19475589-19475608 Msa0012770:three_prime_UTR 70.0%
TGGGGGTGGAGGGGATGGTG+AGG - chr1_1:19475223-19475242 Msa0012770:three_prime_UTR 70.0%
GGGGGTGGAGGGGATGGTGA+GGG - chr1_1:19475224-19475243 Msa0012770:three_prime_UTR 70.0%
GGTGGAGGGGATGGTGAGGG+TGG - chr1_1:19475227-19475246 Msa0012770:three_prime_UTR 70.0%
GGAGGGGATGGTGAGGGTGG+TGG - chr1_1:19475230-19475249 Msa0012770:three_prime_UTR 70.0%
GGTGGAGGGGAAGGTGAGGG+TGG - chr1_1:19475322-19475341 Msa0012770:three_prime_UTR 70.0%
GGAGGGGAAGGTGAGGGTGG+CGG - chr1_1:19475325-19475344 Msa0012770:three_prime_UTR 70.0%
TGGTGGGGGTGGGGAAGGTG+AGG - chr1_1:19475414-19475433 Msa0012770:three_prime_UTR 70.0%
GGTGGGGGTGGGGAAGGTGA+GGG - chr1_1:19475415-19475434 Msa0012770:three_prime_UTR 70.0%
GGTGGGGAAGGTGAGGGTGG+TGG - chr1_1:19475421-19475440 Msa0012770:three_prime_UTR 70.0%
! GGGGAAGGTGAGGGTGGTGG+TGG - chr1_1:19475424-19475443 Msa0012770:three_prime_UTR 70.0%
!! TGGAGGTGGTGGGGAAGGCG+AGG - chr1_1:19475462-19475481 Msa0012770:three_prime_UTR 70.0%
!! GGAGGTGGTGGGGAAGGCGA+GGG - chr1_1:19475463-19475482 Msa0012770:three_prime_UTR 70.0%
!! GGTGGTGGAGGTGACGGGGA+TGG - chr1_1:19475580-19475599 Msa0012770:three_prime_UTR 70.0%
!! GGTGGAGGTGACGGGGATGG+AGG - chr1_1:19475583-19475602 Msa0012770:three_prime_UTR 70.0%
!! GGAGGTGACGGGGATGGAGG+AGG - chr1_1:19475586-19475605 Msa0012770:three_prime_UTR 70.0%
!! GGTGACGGGGATGGAGGAGG+TGG - chr1_1:19475589-19475608 Msa0012770:three_prime_UTR 70.0%
! GGGGAAGGTGAGGGTGGCGG+AGG - chr1_1:19475328-19475347 Msa0012770:three_prime_UTR 75.0%
GGGGGTGGGGAAGGTGAGGG+TGG - chr1_1:19475418-19475437 Msa0012770:three_prime_UTR 75.0%
!! GGTGGTGGGGAAGGCGAGGG+TGG - chr1_1:19475466-19475485 Msa0012770:three_prime_UTR 75.0%
GGTGGGGAAGGCGAGGGTGG+TGG - chr1_1:19475469-19475488 Msa0012770:three_prime_UTR 75.0%
! GGGGAAGGCGAGGGTGGTGG+TGG - chr1_1:19475472-19475491 Msa0012770:three_prime_UTR 75.0%
! GGGGAAGGTGAGGGTGGCGG+AGG - chr1_1:19475328-19475347 Msa0012770:three_prime_UTR 75.0%
GGGGGTGGGGAAGGTGAGGG+TGG - chr1_1:19475418-19475437 Msa0012770:three_prime_UTR 75.0%
!! GGTGGTGGGGAAGGCGAGGG+TGG - chr1_1:19475466-19475485 Msa0012770:three_prime_UTR 75.0%
GGTGGGGAAGGCGAGGGTGG+TGG - chr1_1:19475469-19475488 Msa0012770:three_prime_UTR 75.0%
! GGGGAAGGCGAGGGTGGTGG+TGG - chr1_1:19475472-19475491 Msa0012770:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 19475078 19476061 19475078 ID=Msa0012770;Name=Msa0012770
chr1_1 mRNA 19475078 19476061 19475078 ID=Msa0012770-mRNA-1;Parent=Msa0012770;Name=Msa0012770-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0|0.5|1|0|0|2|551|74
chr1_1 exon 19475078 19475727 19475078 ID=Msa0012770-mRNA-1:exon:7071;Parent=Msa0012770-mRNA-1
chr1_1 exon 19475936 19476061 19475936 ID=Msa0012770-mRNA-1:exon:7070;Parent=Msa0012770-mRNA-1
chr1_1 CDS 19475936 19476061 19475936 ID=Msa0012770-mRNA-1:cds;Parent=Msa0012770-mRNA-1
chr1_1 CDS 19475629 19475727 19475629 ID=Msa0012770-mRNA-1:cds;Parent=Msa0012770-mRNA-1
chr1_1 three_prime_UTR 19475078 19475628 19475078 ID=Msa0012770-mRNA-1:three_prime_utr;Parent=Msa0012770-mRNA-1
Gene Sequence

>Msa0012770

ATGGAGGAGGAGGAGATTTATAATAGTATGGTGGTGGAGGAGATGGTGAAGGGGGTGGGGGAGACTTGTAGTAGTATGGTGGTGGAGGAGATGGTGAAGGTGGTGGTGGGGATTTGTAATAGTATGTATGGTGGGGGTGGGGAAGGTGAGGGTGGTGGTGGTGACTTGTACACATATGGAGGTGGTGGGGAAGGCGAGGGTGGTGGTGGTGACTTGTATACATAA
Protein sequence

>Msa0012770

MEEEEIYNSMVVEEMVKGVGETCSSMVVEEMVKVVVGICNSMYGGGGEGEGGGGDLYTYGGGGEGEGGGGDLYT*