AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0717540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0717540 MtrunA17_Chr5g0405571 98.615 361 5 0 1 361 1 361 0.0 738
Msa0717540 MtrunA17_Chr2g0292421 44.241 382 182 7 3 361 5 378 6.58e-100 300
Msa0717540 MtrunA17_Chr3g0132841 30.357 224 136 12 140 354 470 682 1.99e-15 77.8
Msa0717540 MtrunA17_Chr4g0072351 28.230 209 131 11 140 340 479 676 2.19e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0717540 AT5G66190.1 83.242 364 54 3 1 361 1 360 0.0 592
Msa0717540 AT1G20020.1 76.152 369 80 3 1 361 1 369 0.0 590
Msa0717540 AT1G20020.3 75.881 369 81 3 1 361 1 369 0.0 588
Msa0717540 AT1G20020.2 87.059 255 33 0 107 361 1 255 4.18e-174 484
Msa0717540 AT5G66190.2 89.370 254 27 0 108 361 9 262 1.89e-166 465
Msa0717540 AT4G05390.1 46.505 329 168 4 40 361 51 378 4.73e-100 301
Msa0717540 AT1G30510.2 43.832 381 190 7 2 361 5 382 7.68e-100 300
Msa0717540 AT1G30510.1 43.583 374 196 5 2 361 9 381 7.86e-100 300
Msa0717540 AT4G05390.2 50.853 293 136 4 76 361 59 350 9.50e-100 299
Msa0717540 AT1G30510.3 48.101 316 156 4 53 361 3 317 3.00e-99 296
Msa0717540 AT4G24520.1 28.571 224 140 12 140 354 470 682 7.32e-15 76.3
Msa0717540 AT4G24520.2 28.571 224 140 12 140 354 466 678 8.07e-15 76.3

Find 123 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTACAACCCTTGTAATTT+TGG 0.126679 5_1:+11430470 Msa0717540:three_prime_UTR
AGCAGTGCTCTTGGTGATTT+TGG 0.159118 5_1:+11428453 Msa0717540:CDS
CAGCAGCCATATGTTGTTAT+TGG 0.206536 5_1:-11427269 None:intergenic
TCTAGGGACGAGTAAGTTTA+AGG 0.240129 5_1:-11430816 None:intergenic
TGGTTTGGCATGGCTCTTCT+TGG 0.262373 5_1:+11429729 Msa0717540:CDS
CTCCCAATGTATGGTGTCTT+TGG 0.262820 5_1:-11427727 None:intergenic
GATTATTCACAATCAAATTC+AGG 0.268799 5_1:-11430600 None:intergenic
CAAAACCCCTTAGGCTAAAA+TGG 0.269657 5_1:+11427020 Msa0717540:five_prime_UTR
TTCTGCGTATTGTGCCATTC+TGG 0.290367 5_1:-11429991 None:intergenic
AGAGAAGTGGAGTTGGAGTA+TGG 0.297934 5_1:-11427315 None:intergenic
TTAATAAAGACTCACAGTTT+TGG 0.301523 5_1:-11428481 None:intergenic
CTCTAACTCGGACCAAAGTT+TGG 0.313854 5_1:+11430781 Msa0717540:three_prime_UTR
AATATGTCTAGATTATTTAT+AGG 0.325434 5_1:-11426992 None:intergenic
TTGAATAATGTTTCTATAAG+TGG 0.339520 5_1:+11427598 Msa0717540:CDS
CTGCAGTTGGGAACTGGTAC+TGG 0.341094 5_1:+11429360 Msa0717540:intron
AAGCAGCTCACTGCTTTATA+AGG 0.342576 5_1:+11429762 Msa0717540:CDS
AGAAAGCACCTGAGAACTTC+AGG 0.359267 5_1:+11429907 Msa0717540:CDS
ATTCTTCCAATAACAACATA+TGG 0.378879 5_1:+11427263 Msa0717540:exon
TATTCAGGCGACTTGAAGCC+TGG 0.381421 5_1:+11429150 Msa0717540:intron
ATATTTGTAGTTCAATGGTT+TGG 0.384817 5_1:+11429714 Msa0717540:intron
AGAAAAGATATCAAAGAAAC+AGG 0.385941 5_1:+11427675 Msa0717540:CDS
TGATAGACTTGTCTTCAAAA+AGG 0.387248 5_1:+11427365 Msa0717540:CDS
CATAATATCGACCACTTCTC+TGG 0.390696 5_1:+11427092 Msa0717540:five_prime_UTR
GGATCTGAAGTACAGATTAC+TGG 0.391458 5_1:+11429171 Msa0717540:CDS
CGTATTGTGCCATTCTGGTT+TGG 0.393872 5_1:-11429986 None:intergenic
ACGGTGGCATTAGGATCTTT+TGG 0.394188 5_1:-11429219 None:intergenic
CCATTCTTGTCAATACCATC+TGG 0.394699 5_1:-11428396 None:intergenic
TACAGAGAAGGACAGTCAAT+TGG 0.395708 5_1:+11428366 Msa0717540:CDS
ATAAGCATTTCTTTACCAAC+TGG 0.399545 5_1:-11429195 None:intergenic
TACTAGGGATGAGGCAGATT+GGG 0.405130 5_1:+11430743 Msa0717540:three_prime_UTR
GGTTTGGCATGGCTCTTCTT+GGG 0.411064 5_1:+11429730 Msa0717540:CDS
TTAAATATGCTATTAGTACT+AGG 0.413869 5_1:+11430727 Msa0717540:three_prime_UTR
GAAGGGAATTGATGACATAA+TGG 0.416372 5_1:+11430079 Msa0717540:CDS
ATATGATATTTGTAGTTCAA+TGG 0.421657 5_1:+11429709 Msa0717540:intron
TATGTGTTGTAGGTATTGAT+TGG 0.421809 5_1:+11430310 Msa0717540:intron
ATTTGCATCAATCCAAACTT+TGG 0.427542 5_1:-11430793 None:intergenic
CATTTACAGTACTTGGGTCT+AGG 0.438371 5_1:-11430833 None:intergenic
AGAAGCACCTGCTCCTGTTA+AGG 0.442455 5_1:+11427651 Msa0717540:CDS
TGATGCCGGAGAAGTTGTTA+AGG 0.448771 5_1:+11428802 Msa0717540:CDS
ATTCAGGAAATTGATCAAGT+TGG 0.458323 5_1:-11430584 None:intergenic
ACCATGATGACGGTGGCATT+AGG 0.466209 5_1:-11429228 None:intergenic
CTTCAACTGTCTCTTGTACT+CGG 0.468568 5_1:-11430334 None:intergenic
TAAAGCAGTGAGCTGCTTGT+GGG 0.469081 5_1:-11429757 None:intergenic
ACAGAGAAGGACAGTCAATT+GGG 0.483120 5_1:+11428367 Msa0717540:CDS
AAACTCATGCATGAGCCATC+AGG 0.489065 5_1:+11430686 Msa0717540:three_prime_UTR
CGAGAAGCATGAAGATTACA+AGG 0.497025 5_1:+11429422 Msa0717540:CDS
CACAATACGCAGAAGAGTTG+TGG 0.498754 5_1:+11430000 Msa0717540:CDS
AAGTCAAGCCTGAAGTTCTC+AGG 0.498853 5_1:-11429915 None:intergenic
ACTCCACTTCTCTTCCGATC+AGG 0.500775 5_1:+11427325 Msa0717540:CDS
AACCAAAGACACCATACATT+GGG 0.502036 5_1:+11427725 Msa0717540:CDS
TCAATTGCTAGCAGTGCTCT+TGG 0.502382 5_1:+11428444 Msa0717540:CDS
TGTAGTTCAATGGTTTGGCA+TGG 0.502735 5_1:+11429719 Msa0717540:intron
AGAAGACACCTCCCAATGTA+TGG 0.503902 5_1:-11427736 None:intergenic
GTTTCACTCGCTGCCAAAGA+AGG 0.504760 5_1:+11430101 Msa0717540:CDS
GTAATCTATCTACAGAATAC+AGG 0.506663 5_1:-11430453 None:intergenic
ACAATACGCAGAAGAGTTGT+GGG 0.513315 5_1:+11430001 Msa0717540:CDS
ATTTACAGTACTTGGGTCTA+GGG 0.518474 5_1:-11430832 None:intergenic
ATTGACTGTCCTTCTCTGTA+AGG 0.519022 5_1:-11428363 None:intergenic
ACAGGAATTTGAAAAGATGA+AGG 0.521111 5_1:+11429884 Msa0717540:intron
GTACTAGGGATGAGGCAGAT+TGG 0.521890 5_1:+11430742 Msa0717540:three_prime_UTR
ATGATGCACCTGGTGAAACT+TGG 0.522730 5_1:+11427779 Msa0717540:CDS
GTAATCTGTACTTCAGATCC+AGG 0.530710 5_1:-11429168 None:intergenic
CCAGATGGTATTGACAAGAA+TGG 0.533775 5_1:+11428396 Msa0717540:CDS
TGTAGCAACTTCGGCTCTCA+CGG 0.537518 5_1:-11427629 None:intergenic
TGCTATTAGTACTAGGGATG+AGG 0.538545 5_1:+11430734 Msa0717540:three_prime_UTR
TCCTAATGCCACCGTCATCA+TGG 0.538982 5_1:+11429227 Msa0717540:CDS
GATGCCGGAGAAGTTGTTAA+GGG 0.540363 5_1:+11428803 Msa0717540:CDS
TGAGCCATCAGGTTACGAGC+AGG 0.541235 5_1:+11430697 Msa0717540:three_prime_UTR
GACTCCCTTAACAACTTCTC+CGG 0.542086 5_1:-11428807 None:intergenic
AATAATATTGTTCACAAGCA+AGG 0.542192 5_1:-11430510 None:intergenic
TAAATATGCTATTAGTACTA+GGG 0.543318 5_1:+11430728 Msa0717540:three_prime_UTR
GATCGGAAGAGAAGTGGAGT+TGG 0.545018 5_1:-11427322 None:intergenic
TATTGTGACCAAAACCCCTT+AGG 0.545886 5_1:+11427011 Msa0717540:five_prime_UTR
TTGGTCCGAGTTAGAGACAC+TGG 0.549592 5_1:-11430774 None:intergenic
TGAGATATGGCCTGAAAATG+AGG 0.549695 5_1:+11430660 Msa0717540:three_prime_UTR
CACCCCTGCTCGTAACCTGA+TGG 0.550504 5_1:-11430701 None:intergenic
AGTTGAAGAAGGCAGAGCAA+TGG 0.557197 5_1:+11430349 Msa0717540:CDS
ATAATGTTTCTATAAGTGGA+AGG 0.557363 5_1:+11427602 Msa0717540:CDS
CTTCTCAACACAAAGATCAC+TGG 0.561517 5_1:+11427754 Msa0717540:CDS
TAGGCTAAAATGGTCATCAC+AGG 0.561974 5_1:+11427030 Msa0717540:five_prime_UTR
TAGATTATTTATAGGTCATG+AGG 0.566514 5_1:-11426984 None:intergenic
AAACCAAAGACACCATACAT+TGG 0.569087 5_1:+11427724 Msa0717540:CDS
TGTCCTGATCGGAAGAGAAG+TGG 0.571586 5_1:-11427328 None:intergenic
AGCCATCAGGTTACGAGCAG+GGG 0.572220 5_1:+11430699 Msa0717540:three_prime_UTR
ATAAAGCAGTGAGCTGCTTG+TGG 0.572307 5_1:-11429758 None:intergenic
GTACAAGAGACAGTTGAAGA+AGG 0.576995 5_1:+11430338 Msa0717540:CDS
AATGTACATCCAAACCAGAA+TGG 0.582961 5_1:+11429977 Msa0717540:CDS
TAAGCATTTCTTTACCAACT+GGG 0.583707 5_1:-11429194 None:intergenic
GGACTGAAAGGAATGGAGAA+GGG 0.584337 5_1:+11430062 Msa0717540:CDS
GAATATGCTGCTGCACAAAG+TGG 0.585462 5_1:-11430419 None:intergenic
GAGCCATCAGGTTACGAGCA+GGG 0.586355 5_1:+11430698 Msa0717540:three_prime_UTR
AGGTGCTTCTGTAGCAACTT+CGG 0.589953 5_1:-11427638 None:intergenic
TGGACTGAAAGGAATGGAGA+AGG 0.593496 5_1:+11430061 Msa0717540:CDS
GTACAGATTACTGGCCCAGT+TGG 0.601436 5_1:+11429180 Msa0717540:CDS
GGAGAGGTTCCTTACAGAGA+AGG 0.601808 5_1:+11428354 Msa0717540:intron
TTTGTCATACCAAAATTACA+AGG 0.602419 5_1:-11430479 None:intergenic
AATTCCCAGTGTCTCTAACT+CGG 0.603971 5_1:+11430769 Msa0717540:three_prime_UTR
TAATGTTTCTATAAGTGGAA+GGG 0.606886 5_1:+11427603 Msa0717540:CDS
CAGCTCACTGCTTTATAAGG+AGG 0.608066 5_1:+11429765 Msa0717540:CDS
TTTGAAGACAAGTCTATCAG+GGG 0.608702 5_1:-11427361 None:intergenic
GTTTACATGTGTGGACTGAA+AGG 0.611115 5_1:+11430050 Msa0717540:CDS
ACCATGTGCCAAGTTTCACC+AGG 0.614512 5_1:-11427787 None:intergenic
CTTGTGTACACAAATGATGC+CGG 0.615312 5_1:+11428788 Msa0717540:CDS
TTGTCATACCAAAATTACAA+GGG 0.619687 5_1:-11430478 None:intergenic
AAAGCAGTGAGCTGCTTGTG+GGG 0.619800 5_1:-11429756 None:intergenic
AAATTTGTGAGCCAGAGAAG+TGG 0.620867 5_1:-11427103 None:intergenic
GAATACAATCTCAGCTTGTG+AGG 0.622294 5_1:-11428423 None:intergenic
AGAGAACAAGTAAACGACAA+AGG 0.624485 5_1:+11429948 Msa0717540:CDS
TCAAAGATATTATGATTGAG+TGG 0.626581 5_1:-11427129 None:intergenic
GAAATAACAGATGTCCTGAT+CGG 0.629913 5_1:-11427339 None:intergenic
ATATCAAAGAAACAGGAGGA+AGG 0.640788 5_1:+11427682 Msa0717540:CDS
AAAGATATCAAAGAAACAGG+AGG 0.651290 5_1:+11427678 Msa0717540:CDS
CAAAGACACCATACATTGGG+AGG 0.654205 5_1:+11427728 Msa0717540:CDS
TGGTCCGAGTTAGAGACACT+GGG 0.656928 5_1:-11430773 None:intergenic
ACCTGGTGAAACTTGGCACA+TGG 0.659148 5_1:+11427786 Msa0717540:CDS
GTTGGAGTATGGAAAAGAGA+CGG 0.659495 5_1:-11427304 None:intergenic
TCAATTGGGATAGTTCCAGA+TGG 0.670503 5_1:+11428381 Msa0717540:CDS
GAAGTGGTCGATATTATGTG+AGG 0.693308 5_1:-11427087 None:intergenic
CATGTGTGGACTGAAAGGAA+TGG 0.694748 5_1:+11430055 Msa0717540:CDS
TAAGTAATGTACCATGATGA+CGG 0.701831 5_1:-11429238 None:intergenic
ATCACTGGTGATGATGCACC+TGG 0.707421 5_1:+11427769 Msa0717540:CDS
GGAGTATGGAAAAGAGACGG+CGG 0.734819 5_1:-11427301 None:intergenic
GTAATGTACCATGATGACGG+TGG 0.793247 5_1:-11429235 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATGTCTAGATTATTTAT+AGG - chr5_1:11426995-11427014 None:intergenic 15.0%
!! GCAATTTCTTAAATTATTAT+CGG - chr5_1:11427451-11427470 None:intergenic 15.0%
!! GATTGTAGTTTAAAAAAAAA+TGG - chr5_1:11428258-11428277 None:intergenic 15.0%
!!! TTTATAGATCTTTTAAAGAA+TGG + chr5_1:11429554-11429573 Msa0717540:intron 15.0%
!!! TTGAATAATGTTTCTATAAG+TGG + chr5_1:11427598-11427617 Msa0717540:CDS 20.0%
!! TGTAAAAAGTAATAATAGAG+AGG - chr5_1:11427847-11427866 None:intergenic 20.0%
!!! CATTACAAGGTTTTAAATTA+TGG + chr5_1:11427876-11427895 Msa0717540:intron 20.0%
!!! AATAGAAAAACTGATTCTAT+AGG + chr5_1:11427918-11427937 Msa0717540:intron 20.0%
!! TAGTATTATGCATTGAATTA+GGG + chr5_1:11428038-11428057 Msa0717540:intron 20.0%
!!! TAATACAGTATTAGGTTTTT+AGG - chr5_1:11428329-11428348 None:intergenic 20.0%
!!! TTATCATATACTTGTTTTGA+GGG - chr5_1:11428683-11428702 None:intergenic 20.0%
!!! TTTGATTATTAACTGAGTTT+TGG + chr5_1:11429675-11429694 Msa0717540:intron 20.0%
!! ATATGATATTTGTAGTTCAA+TGG + chr5_1:11429709-11429728 Msa0717540:intron 20.0%
!! TTAAATATGCTATTAGTACT+AGG + chr5_1:11430727-11430746 Msa0717540:three_prime_UTR 20.0%
!! TAAATATGCTATTAGTACTA+GGG + chr5_1:11430728-11430747 Msa0717540:three_prime_UTR 20.0%
! TAGATTATTTATAGGTCATG+AGG - chr5_1:11426987-11427006 None:intergenic 25.0%
! TCAAAGATATTATGATTGAG+TGG - chr5_1:11427132-11427151 None:intergenic 25.0%
!!! TAGTATGGTTTTTTTTTCTC+TGG - chr5_1:11427160-11427179 None:intergenic 25.0%
! ATTCTTCCAATAACAACATA+TGG + chr5_1:11427263-11427282 Msa0717540:exon 25.0%
! TCAATGCATGTATATGATTA+TGG - chr5_1:11427405-11427424 None:intergenic 25.0%
! TCTTAAATTATTATCGGTGT+CGG - chr5_1:11427445-11427464 None:intergenic 25.0%
! TGATTTATTGTTTGTTTGTC+AGG + chr5_1:11427570-11427589 Msa0717540:intron 25.0%
!! ATAATGTTTCTATAAGTGGA+AGG + chr5_1:11427602-11427621 Msa0717540:CDS 25.0%
!! TAATGTTTCTATAAGTGGAA+GGG + chr5_1:11427603-11427622 Msa0717540:CDS 25.0%
! AGAAAAGATATCAAAGAAAC+AGG + chr5_1:11427675-11427694 Msa0717540:CDS 25.0%
! TACATTCACTATTCATTACA+AGG + chr5_1:11427863-11427882 Msa0717540:intron 25.0%
! CTAGTATTATGCATTGAATT+AGG + chr5_1:11428037-11428056 Msa0717540:intron 25.0%
! TCATCATCTATATTTGATTG+TGG - chr5_1:11428181-11428200 None:intergenic 25.0%
!!! CTAACACAAATTTTAGGAAA+TGG - chr5_1:11428219-11428238 None:intergenic 25.0%
! CATTTCCTAAAATTTGTGTT+AGG + chr5_1:11428217-11428236 Msa0717540:intron 25.0%
!! CATTTCCTAACACAAATTTT+AGG - chr5_1:11428225-11428244 None:intergenic 25.0%
! AAAATTTGTGTTAGGAAATG+CGG + chr5_1:11428225-11428244 Msa0717540:intron 25.0%
! ACAATCTAGAAATCATAACA+TGG + chr5_1:11428272-11428291 Msa0717540:intron 25.0%
! ACCTAATACTGTATTATTAC+AGG + chr5_1:11428333-11428352 Msa0717540:intron 25.0%
! TCCTGTAATAATACAGTATT+AGG - chr5_1:11428337-11428356 None:intergenic 25.0%
!! TTAATAAAGACTCACAGTTT+TGG - chr5_1:11428484-11428503 None:intergenic 25.0%
! ACTGTGAGTCTTTATTAATT+TGG + chr5_1:11428486-11428505 Msa0717540:intron 25.0%
!! AAAGTTCGAATTTTGTAACA+GGG - chr5_1:11428620-11428639 None:intergenic 25.0%
!! AAAAGTTCGAATTTTGTAAC+AGG - chr5_1:11428621-11428640 None:intergenic 25.0%
!!! CTTATCATATACTTGTTTTG+AGG - chr5_1:11428684-11428703 None:intergenic 25.0%
!!! GAGAAAATTTTAAGGATCAA+CGG - chr5_1:11429341-11429360 None:intergenic 25.0%
!! TTAAAATTTTCTCTGCAGTT+GGG + chr5_1:11429348-11429367 Msa0717540:intron 25.0%
!! ACATTTTCCATAAAAATGAG+CGG - chr5_1:11429398-11429417 None:intergenic 25.0%
! ATATTTGTAGTTCAATGGTT+TGG + chr5_1:11429714-11429733 Msa0717540:intron 25.0%
! CTACTTTAATTGTATGATAC+AGG + chr5_1:11429866-11429885 Msa0717540:intron 25.0%
!! AATGTTTTTCTTACCTTCTT+TGG - chr5_1:11430117-11430136 None:intergenic 25.0%
!! TTTTATTACATGAAGCATAG+AGG + chr5_1:11430143-11430162 Msa0717540:intron 25.0%
! TTTATTACATGAAGCATAGA+GGG + chr5_1:11430144-11430163 Msa0717540:intron 25.0%
! TTGTCATACCAAAATTACAA+GGG - chr5_1:11430481-11430500 None:intergenic 25.0%
! TTTGTCATACCAAAATTACA+AGG - chr5_1:11430482-11430501 None:intergenic 25.0%
! AATAATATTGTTCACAAGCA+AGG - chr5_1:11430513-11430532 None:intergenic 25.0%
!! TGTTGCAAGAAATAATTTTG+AGG + chr5_1:11430541-11430560 Msa0717540:three_prime_UTR 25.0%
! GATTATTCACAATCAAATTC+AGG - chr5_1:11430603-11430622 None:intergenic 25.0%
!! GTCTAATTTTAGATGAGATA+TGG + chr5_1:11430647-11430666 Msa0717540:three_prime_UTR 25.0%
!!! ATGGTTTTTTTTTCTCTGGT+TGG - chr5_1:11427156-11427175 None:intergenic 30.0%
!! CAGATTTTGAGTGAACTATA+GGG - chr5_1:11427183-11427202 None:intergenic 30.0%
!! TTTTGAAGACAAGTCTATCA+GGG - chr5_1:11427365-11427384 None:intergenic 30.0%
!! TTTTTGAAGACAAGTCTATC+AGG - chr5_1:11427366-11427385 None:intergenic 30.0%
TGATAGACTTGTCTTCAAAA+AGG + chr5_1:11427365-11427384 Msa0717540:CDS 30.0%
! GATATCTTTTCTACCTTAAC+AGG - chr5_1:11427667-11427686 None:intergenic 30.0%
AAAGATATCAAAGAAACAGG+AGG + chr5_1:11427678-11427697 Msa0717540:CDS 30.0%
GTTTGATAAATAGACACACA+AGG + chr5_1:11427942-11427961 Msa0717540:intron 30.0%
CAACAATTGATCACAAAGTT+CGG + chr5_1:11427968-11427987 Msa0717540:intron 30.0%
ATACTGTATTATTACAGGAG+AGG + chr5_1:11428338-11428357 Msa0717540:intron 30.0%
! AAGTTCGAATTTTGTAACAG+GGG - chr5_1:11428619-11428638 None:intergenic 30.0%
TGCTGCTCTTAAATTCATTT+GGG - chr5_1:11428660-11428679 None:intergenic 30.0%
CTGATATGATTCCTTTATAC+AGG + chr5_1:11428745-11428764 Msa0717540:intron 30.0%
GTCAATGTTCTAATCAATTG+AGG + chr5_1:11428933-11428952 Msa0717540:intron 30.0%
ATAGTAAAGTCTCCACATTA+GGG - chr5_1:11428974-11428993 None:intergenic 30.0%
TATAGTAAAGTCTCCACATT+AGG - chr5_1:11428975-11428994 None:intergenic 30.0%
TAAGCATTTCTTTACCAACT+GGG - chr5_1:11429197-11429216 None:intergenic 30.0%
ATAAGCATTTCTTTACCAAC+TGG - chr5_1:11429198-11429217 None:intergenic 30.0%
TAAGTAATGTACCATGATGA+CGG - chr5_1:11429241-11429260 None:intergenic 30.0%
! CTTTTCGATATAGATGAAGA+TGG - chr5_1:11429265-11429284 None:intergenic 30.0%
AACAGTCAAGACAAAAGAAA+GGG - chr5_1:11429310-11429329 None:intergenic 30.0%
! CAACTGCAGAGAAAATTTTA+AGG - chr5_1:11429349-11429368 None:intergenic 30.0%
! CTTAAAATTTTCTCTGCAGT+TGG + chr5_1:11429347-11429366 Msa0717540:intron 30.0%
TACAAGGTAAGAGAAGAATT+TGG + chr5_1:11429438-11429457 Msa0717540:intron 30.0%
! AAGAGAAGAATTTGGAACAA+AGG + chr5_1:11429446-11429465 Msa0717540:intron 30.0%
GTAGTTGCAATAAATTAGAG+TGG - chr5_1:11429519-11429538 None:intergenic 30.0%
!!! TTAACTGAGTTTTGGACTTT+TGG + chr5_1:11429683-11429702 Msa0717540:intron 30.0%
TGCTACAAGTTATGTAGAAT+GGG + chr5_1:11429826-11429845 Msa0717540:intron 30.0%
ACAGGAATTTGAAAAGATGA+AGG + chr5_1:11429884-11429903 Msa0717540:intron 30.0%
!! AACACTTTTGTTTACATGTG+TGG + chr5_1:11430041-11430060 Msa0717540:CDS 30.0%
TTATTACATGAAGCATAGAG+GGG + chr5_1:11430145-11430164 Msa0717540:intron 30.0%
TGAAATTCAAACCTTGATGA+AGG + chr5_1:11430211-11430230 Msa0717540:intron 30.0%
! TAGTATTTTCTCCTTCATCA+AGG - chr5_1:11430225-11430244 None:intergenic 30.0%
AACACATAACAAACACAACA+TGG - chr5_1:11430298-11430317 None:intergenic 30.0%
!! TTGTGTTTGTTATGTGTTGT+AGG + chr5_1:11430300-11430319 Msa0717540:intron 30.0%
!! TATGTGTTGTAGGTATTGAT+TGG + chr5_1:11430310-11430329 Msa0717540:intron 30.0%
GTAATCTATCTACAGAATAC+AGG - chr5_1:11430456-11430475 None:intergenic 30.0%
! GATTACAACCCTTGTAATTT+TGG + chr5_1:11430470-11430489 Msa0717540:three_prime_UTR 30.0%
ATTCAGGAAATTGATCAAGT+TGG - chr5_1:11430587-11430606 None:intergenic 30.0%
ATTTGCATCAATCCAAACTT+TGG - chr5_1:11430796-11430815 None:intergenic 30.0%
!! TGATGACCATTTTAGCCTAA+GGG - chr5_1:11427029-11427048 None:intergenic 35.0%
!! GCAGATTTTGAGTGAACTAT+AGG - chr5_1:11427184-11427203 None:intergenic 35.0%
GAAATAACAGATGTCCTGAT+CGG - chr5_1:11427342-11427361 None:intergenic 35.0%
TTTGAAGACAAGTCTATCAG+GGG - chr5_1:11427364-11427383 None:intergenic 35.0%
! TATACATGCATTGATCCAAC+CGG + chr5_1:11427411-11427430 Msa0717540:intron 35.0%
ATATCAAAGAAACAGGAGGA+AGG + chr5_1:11427682-11427701 Msa0717540:CDS 35.0%
AAACCAAAGACACCATACAT+TGG + chr5_1:11427724-11427743 Msa0717540:CDS 35.0%
AACCAAAGACACCATACATT+GGG + chr5_1:11427725-11427744 Msa0717540:CDS 35.0%
AGATGATGAAACTTCAATCG+CGG + chr5_1:11428192-11428211 Msa0717540:intron 35.0%
TTTCTGTACTGTATTGTAGC+TGG + chr5_1:11428525-11428544 Msa0717540:intron 35.0%
TTCTGTACTGTATTGTAGCT+GGG + chr5_1:11428526-11428545 Msa0717540:intron 35.0%
! AATTTTGTAACAGGGGTCAA+TGG - chr5_1:11428612-11428631 None:intergenic 35.0%
! GTGCTGCTCTTAAATTCATT+TGG - chr5_1:11428661-11428680 None:intergenic 35.0%
! TTGCCAACACATCTTTTGTA+TGG + chr5_1:11428704-11428723 Msa0717540:intron 35.0%
! TGCCAACACATCTTTTGTAT+GGG + chr5_1:11428705-11428724 Msa0717540:intron 35.0%
TACCCATACAAAAGATGTGT+TGG - chr5_1:11428710-11428729 None:intergenic 35.0%
ACAGAGAGAAACCTGTATAA+AGG - chr5_1:11428759-11428778 None:intergenic 35.0%
CTGCTCTAATTTCTTGTGTA+AGG + chr5_1:11428829-11428848 Msa0717540:intron 35.0%
TGCATTTCCATTTGCATTTG+AGG + chr5_1:11428869-11428888 Msa0717540:intron 35.0%
TTAGAGTCCTCAAATGCAAA+TGG - chr5_1:11428879-11428898 None:intergenic 35.0%
ACAGTGGTGATTAGTGTAAA+GGG - chr5_1:11429121-11429140 None:intergenic 35.0%
CAACAGTCAAGACAAAAGAA+AGG - chr5_1:11429311-11429330 None:intergenic 35.0%
TCCATAAAAATGAGCGGAAT+GGG - chr5_1:11429392-11429411 None:intergenic 35.0%
TTCCATAAAAATGAGCGGAA+TGG - chr5_1:11429393-11429412 None:intergenic 35.0%
GCAATAAATTAGAGTGGCAA+CGG - chr5_1:11429513-11429532 None:intergenic 35.0%
TTACTTTGCTTGTGCTTACT+AGG - chr5_1:11429592-11429611 None:intergenic 35.0%
CTGCTACAAGTTATGTAGAA+TGG + chr5_1:11429825-11429844 Msa0717540:intron 35.0%
AGAGAACAAGTAAACGACAA+AGG + chr5_1:11429948-11429967 Msa0717540:CDS 35.0%
AATGTACATCCAAACCAGAA+TGG + chr5_1:11429977-11429996 Msa0717540:CDS 35.0%
! GAAGGGAATTGATGACATAA+TGG + chr5_1:11430079-11430098 Msa0717540:CDS 35.0%
TATTACATGAAGCATAGAGG+GGG + chr5_1:11430146-11430165 Msa0717540:intron 35.0%
! TGAGTTTGATCCTCATTTTC+AGG - chr5_1:11430673-11430692 None:intergenic 35.0%
TATTGTGACCAAAACCCCTT+AGG + chr5_1:11427011-11427030 Msa0717540:five_prime_UTR 40.0%
!! CATTTTAGCCTAAGGGGTTT+TGG - chr5_1:11427022-11427041 None:intergenic 40.0%
CAAAACCCCTTAGGCTAAAA+TGG + chr5_1:11427020-11427039 Msa0717540:five_prime_UTR 40.0%
!! GATGACCATTTTAGCCTAAG+GGG - chr5_1:11427028-11427047 None:intergenic 40.0%
!! GTGATGACCATTTTAGCCTA+AGG - chr5_1:11427030-11427049 None:intergenic 40.0%
TAGGCTAAAATGGTCATCAC+AGG + chr5_1:11427030-11427049 Msa0717540:five_prime_UTR 40.0%
GAAGTGGTCGATATTATGTG+AGG - chr5_1:11427090-11427109 None:intergenic 40.0%
CATAATATCGACCACTTCTC+TGG + chr5_1:11427092-11427111 Msa0717540:five_prime_UTR 40.0%
AAATTTGTGAGCCAGAGAAG+TGG - chr5_1:11427106-11427125 None:intergenic 40.0%
GAGTGAACTATAGGGTAGTA+TGG - chr5_1:11427175-11427194 None:intergenic 40.0%
CAGCAGCCATATGTTGTTAT+TGG - chr5_1:11427272-11427291 None:intergenic 40.0%
GTTGGAGTATGGAAAAGAGA+CGG - chr5_1:11427307-11427326 None:intergenic 40.0%
! TTTTCTACCTTAACAGGAGC+AGG - chr5_1:11427661-11427680 None:intergenic 40.0%
CTTCTCAACACAAAGATCAC+TGG + chr5_1:11427754-11427773 Msa0717540:CDS 40.0%
GAAAACTACACCAGTCATTC+TGG - chr5_1:11428018-11428037 None:intergenic 40.0%
ATTGACTGTCCTTCTCTGTA+AGG - chr5_1:11428366-11428385 None:intergenic 40.0%
TACAGAGAAGGACAGTCAAT+TGG + chr5_1:11428366-11428385 Msa0717540:CDS 40.0%
ACAGAGAAGGACAGTCAATT+GGG + chr5_1:11428367-11428386 Msa0717540:CDS 40.0%
TCAATTGGGATAGTTCCAGA+TGG + chr5_1:11428381-11428400 Msa0717540:CDS 40.0%
CCATTCTTGTCAATACCATC+TGG - chr5_1:11428399-11428418 None:intergenic 40.0%
!! CCAGATGGTATTGACAAGAA+TGG + chr5_1:11428396-11428415 Msa0717540:CDS 40.0%
GAATACAATCTCAGCTTGTG+AGG - chr5_1:11428426-11428445 None:intergenic 40.0%
CTTGTGTACACAAATGATGC+CGG + chr5_1:11428788-11428807 Msa0717540:CDS 40.0%
TAAAGTCTCCACATTAGGGA+GGG - chr5_1:11428970-11428989 None:intergenic 40.0%
CAGTGGTGATTAGTGTAAAG+GGG - chr5_1:11429120-11429139 None:intergenic 40.0%
CACAGTGGTGATTAGTGTAA+AGG - chr5_1:11429122-11429141 None:intergenic 40.0%
CTGAATAAAGAGGATCACAG+TGG - chr5_1:11429137-11429156 None:intergenic 40.0%
CACTGTGATCCTCTTTATTC+AGG + chr5_1:11429135-11429154 Msa0717540:intron 40.0%
TTCAAGTCGCCTGAATAAAG+AGG - chr5_1:11429147-11429166 None:intergenic 40.0%
GTAATCTGTACTTCAGATCC+AGG - chr5_1:11429171-11429190 None:intergenic 40.0%
! GGATCTGAAGTACAGATTAC+TGG + chr5_1:11429171-11429190 Msa0717540:CDS 40.0%
CCATAAAAATGAGCGGAATG+GGG - chr5_1:11429391-11429410 None:intergenic 40.0%
! CGAGAAGCATGAAGATTACA+AGG + chr5_1:11429422-11429441 Msa0717540:CDS 40.0%
TTCTGGTAACATCGATCACT+TGG - chr5_1:11429481-11429500 None:intergenic 40.0%
! TGTAGTTCAATGGTTTGGCA+TGG + chr5_1:11429719-11429738 Msa0717540:intron 40.0%
AAGCAGCTCACTGCTTTATA+AGG + chr5_1:11429762-11429781 Msa0717540:CDS 40.0%
ACAATACGCAGAAGAGTTGT+GGG + chr5_1:11430001-11430020 Msa0717540:CDS 40.0%
! GTTTACATGTGTGGACTGAA+AGG + chr5_1:11430050-11430069 Msa0717540:CDS 40.0%
ATTACATGAAGCATAGAGGG+GGG + chr5_1:11430147-11430166 Msa0717540:intron 40.0%
GGTTTGAGCTAATGGTTAGA+AGG + chr5_1:11430186-11430205 Msa0717540:intron 40.0%
CTTCAACTGTCTCTTGTACT+CGG - chr5_1:11430337-11430356 None:intergenic 40.0%
GTACAAGAGACAGTTGAAGA+AGG + chr5_1:11430338-11430357 Msa0717540:CDS 40.0%
TGAGATATGGCCTGAAAATG+AGG + chr5_1:11430660-11430679 Msa0717540:three_prime_UTR 40.0%
TGCTATTAGTACTAGGGATG+AGG + chr5_1:11430734-11430753 Msa0717540:three_prime_UTR 40.0%
AATTCCCAGTGTCTCTAACT+CGG + chr5_1:11430769-11430788 Msa0717540:three_prime_UTR 40.0%
TCTAGGGACGAGTAAGTTTA+AGG - chr5_1:11430819-11430838 None:intergenic 40.0%
AGAGAAGTGGAGTTGGAGTA+TGG - chr5_1:11427318-11427337 None:intergenic 45.0%
! GTCGGTGTTTGTCACTAACA+CGG - chr5_1:11427492-11427511 None:intergenic 45.0%
CTATAGATCGAAGACGTGTC+AGG - chr5_1:11427516-11427535 None:intergenic 45.0%
AGGTGCTTCTGTAGCAACTT+CGG - chr5_1:11427641-11427660 None:intergenic 45.0%
CTCCCAATGTATGGTGTCTT+TGG - chr5_1:11427730-11427749 None:intergenic 45.0%
CAAAGACACCATACATTGGG+AGG + chr5_1:11427728-11427747 Msa0717540:CDS 45.0%
AGAAGACACCTCCCAATGTA+TGG - chr5_1:11427739-11427758 None:intergenic 45.0%
ATGATGCACCTGGTGAAACT+TGG + chr5_1:11427779-11427798 Msa0717540:CDS 45.0%
!! CACATGGTTTTCAGCACTGA+GGG + chr5_1:11427802-11427821 Msa0717540:CDS 45.0%
GACTCATATTCGCTAGCAAG+TGG - chr5_1:11428127-11428146 None:intergenic 45.0%
TCAATTGCTAGCAGTGCTCT+TGG + chr5_1:11428444-11428463 Msa0717540:CDS 45.0%
!! AGCAGTGCTCTTGGTGATTT+TGG + chr5_1:11428453-11428472 Msa0717540:CDS 45.0%
TGATGCCGGAGAAGTTGTTA+AGG + chr5_1:11428802-11428821 Msa0717540:CDS 45.0%
GATGCCGGAGAAGTTGTTAA+GGG + chr5_1:11428803-11428822 Msa0717540:CDS 45.0%
GACTCCCTTAACAACTTCTC+CGG - chr5_1:11428810-11428829 None:intergenic 45.0%
TTCTTTCTCCCTCCCTAATG+TGG + chr5_1:11428959-11428978 Msa0717540:intron 45.0%
GTAAAGTCTCCACATTAGGG+AGG - chr5_1:11428971-11428990 None:intergenic 45.0%
! ACGGTGGCATTAGGATCTTT+TGG - chr5_1:11429222-11429241 None:intergenic 45.0%
!! GTAATGTACCATGATGACGG+TGG - chr5_1:11429238-11429257 None:intergenic 45.0%
! TTTTCTCTGCAGTTGGGAAC+TGG + chr5_1:11429354-11429373 Msa0717540:intron 45.0%
!! CCCCATTCCGCTCATTTTTA+TGG + chr5_1:11429388-11429407 Msa0717540:CDS 45.0%
AATTAGAGTGGCAACGGTTG+TGG - chr5_1:11429507-11429526 None:intergenic 45.0%
TAAAGCAGTGAGCTGCTTGT+GGG - chr5_1:11429760-11429779 None:intergenic 45.0%
ATAAAGCAGTGAGCTGCTTG+TGG - chr5_1:11429761-11429780 None:intergenic 45.0%
CAGCTCACTGCTTTATAAGG+AGG + chr5_1:11429765-11429784 Msa0717540:CDS 45.0%
!! AGAAAGCACCTGAGAACTTC+AGG + chr5_1:11429907-11429926 Msa0717540:CDS 45.0%
AAGTCAAGCCTGAAGTTCTC+AGG - chr5_1:11429918-11429937 None:intergenic 45.0%
! CGTATTGTGCCATTCTGGTT+TGG - chr5_1:11429989-11430008 None:intergenic 45.0%
! TTCTGCGTATTGTGCCATTC+TGG - chr5_1:11429994-11430013 None:intergenic 45.0%
CACAATACGCAGAAGAGTTG+TGG + chr5_1:11430000-11430019 Msa0717540:CDS 45.0%
! CATGTGTGGACTGAAAGGAA+TGG + chr5_1:11430055-11430074 Msa0717540:CDS 45.0%
TGGACTGAAAGGAATGGAGA+AGG + chr5_1:11430061-11430080 Msa0717540:CDS 45.0%
GGACTGAAAGGAATGGAGAA+GGG + chr5_1:11430062-11430081 Msa0717540:CDS 45.0%
!! GCTCAACTGGTTTGAGCTAA+TGG + chr5_1:11430178-11430197 Msa0717540:intron 45.0%
AGTTGAAGAAGGCAGAGCAA+TGG + chr5_1:11430349-11430368 Msa0717540:CDS 45.0%
GAATATGCTGCTGCACAAAG+TGG - chr5_1:11430422-11430441 None:intergenic 45.0%
AAACTCATGCATGAGCCATC+AGG + chr5_1:11430686-11430705 Msa0717540:three_prime_UTR 45.0%
TACTAGGGATGAGGCAGATT+GGG + chr5_1:11430743-11430762 Msa0717540:three_prime_UTR 45.0%
CTCTAACTCGGACCAAAGTT+TGG + chr5_1:11430781-11430800 Msa0717540:three_prime_UTR 45.0%
GGAGTATGGAAAAGAGACGG+CGG - chr5_1:11427304-11427323 None:intergenic 50.0%
GATCGGAAGAGAAGTGGAGT+TGG - chr5_1:11427325-11427344 None:intergenic 50.0%
ACTCCACTTCTCTTCCGATC+AGG + chr5_1:11427325-11427344 Msa0717540:CDS 50.0%
TGTCCTGATCGGAAGAGAAG+TGG - chr5_1:11427331-11427350 None:intergenic 50.0%
ATCGAAGACGTGTCAGGTGT+CGG - chr5_1:11427510-11427529 None:intergenic 50.0%
TGTAGCAACTTCGGCTCTCA+CGG - chr5_1:11427632-11427651 None:intergenic 50.0%
!! AGAAGCACCTGCTCCTGTTA+AGG + chr5_1:11427651-11427670 Msa0717540:CDS 50.0%
! ATCACTGGTGATGATGCACC+TGG + chr5_1:11427769-11427788 Msa0717540:CDS 50.0%
ACCTGGTGAAACTTGGCACA+TGG + chr5_1:11427786-11427805 Msa0717540:CDS 50.0%
ACCATGTGCCAAGTTTCACC+AGG - chr5_1:11427790-11427809 None:intergenic 50.0%
! GCACATGGTTTTCAGCACTG+AGG + chr5_1:11427801-11427820 Msa0717540:CDS 50.0%
GTCTCTGACACCAGAATGAC+TGG + chr5_1:11428005-11428024 Msa0717540:intron 50.0%
GGAGAGGTTCCTTACAGAGA+AGG + chr5_1:11428354-11428373 Msa0717540:intron 50.0%
TATTCAGGCGACTTGAAGCC+TGG + chr5_1:11429150-11429169 Msa0717540:intron 50.0%
GTACAGATTACTGGCCCAGT+TGG + chr5_1:11429180-11429199 Msa0717540:CDS 50.0%
TCCTAATGCCACCGTCATCA+TGG + chr5_1:11429227-11429246 Msa0717540:CDS 50.0%
!! ACCATGATGACGGTGGCATT+AGG - chr5_1:11429231-11429250 None:intergenic 50.0%
! GGCAACGGTTGTGGATTTTC+TGG - chr5_1:11429498-11429517 None:intergenic 50.0%
! TGGTTTGGCATGGCTCTTCT+TGG + chr5_1:11429729-11429748 Msa0717540:CDS 50.0%
GGTTTGGCATGGCTCTTCTT+GGG + chr5_1:11429730-11429749 Msa0717540:CDS 50.0%
AAAGCAGTGAGCTGCTTGTG+GGG - chr5_1:11429759-11429778 None:intergenic 50.0%
GTTTCACTCGCTGCCAAAGA+AGG + chr5_1:11430101-11430120 Msa0717540:CDS 50.0%
ATGAAGCATAGAGGGGGGTT+TGG + chr5_1:11430152-11430171 Msa0717540:intron 50.0%
GTACTAGGGATGAGGCAGAT+TGG + chr5_1:11430742-11430761 Msa0717540:three_prime_UTR 50.0%
TGGTCCGAGTTAGAGACACT+GGG - chr5_1:11430776-11430795 None:intergenic 50.0%
TTGGTCCGAGTTAGAGACAC+TGG - chr5_1:11430777-11430796 None:intergenic 50.0%
!! ATCGGTGTCGGTGTTGTGTC+CGG - chr5_1:11427433-11427452 None:intergenic 55.0%
AAACGCTCGAGCGGATCAAG+TGG - chr5_1:11428102-11428121 None:intergenic 55.0%
CAAGTGGACAAACGCTCGAG+CGG - chr5_1:11428111-11428130 None:intergenic 55.0%
CTGCAGTTGGGAACTGGTAC+TGG + chr5_1:11429360-11429379 Msa0717540:intron 55.0%
GGGGGTTTGGATAGCTCAAC+TGG + chr5_1:11430165-11430184 Msa0717540:intron 55.0%
TGAGCCATCAGGTTACGAGC+AGG + chr5_1:11430697-11430716 Msa0717540:three_prime_UTR 55.0%
GAGCCATCAGGTTACGAGCA+GGG + chr5_1:11430698-11430717 Msa0717540:three_prime_UTR 55.0%
AGCCATCAGGTTACGAGCAG+GGG + chr5_1:11430699-11430718 Msa0717540:three_prime_UTR 55.0%
!! GTGTCGGTGTTGTGTCCGGT+TGG - chr5_1:11427429-11427448 None:intergenic 60.0%
CACCCCTGCTCGTAACCTGA+TGG - chr5_1:11430704-11430723 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 11426982 11430843 11426982 ID=Msa0717540;Name=Msa0717540
chr5_1 mRNA 11426982 11430843 11426982 ID=Msa0717540-mRNA-1;Parent=Msa0717540;Name=Msa0717540-mRNA-1;_AED=0.08;_eAED=0.08;_QI=280|1|1|1|0.88|0.8|10|454|361
chr5_1 exon 11426982 11427172 11426982 ID=Msa0717540-mRNA-1:exon:4646;Parent=Msa0717540-mRNA-1
chr5_1 exon 11427193 11427386 11427193 ID=Msa0717540-mRNA-1:exon:4647;Parent=Msa0717540-mRNA-1
chr5_1 exon 11427592 11427823 11427592 ID=Msa0717540-mRNA-1:exon:4648;Parent=Msa0717540-mRNA-1
chr5_1 exon 11428355 11428488 11428355 ID=Msa0717540-mRNA-1:exon:4649;Parent=Msa0717540-mRNA-1
chr5_1 exon 11428767 11428845 11428767 ID=Msa0717540-mRNA-1:exon:4650;Parent=Msa0717540-mRNA-1
chr5_1 exon 11429157 11429248 11429157 ID=Msa0717540-mRNA-1:exon:4651;Parent=Msa0717540-mRNA-1
chr5_1 exon 11429366 11429443 11429366 ID=Msa0717540-mRNA-1:exon:4652;Parent=Msa0717540-mRNA-1
chr5_1 exon 11429724 11429786 11429724 ID=Msa0717540-mRNA-1:exon:4653;Parent=Msa0717540-mRNA-1
chr5_1 exon 11429888 11430122 11429888 ID=Msa0717540-mRNA-1:exon:4654;Parent=Msa0717540-mRNA-1
chr5_1 exon 11430322 11430843 11430322 ID=Msa0717540-mRNA-1:exon:4655;Parent=Msa0717540-mRNA-1
chr5_1 five_prime_UTR 11426982 11427172 11426982 ID=Msa0717540-mRNA-1:five_prime_utr;Parent=Msa0717540-mRNA-1
chr5_1 five_prime_UTR 11427193 11427281 11427193 ID=Msa0717540-mRNA-1:five_prime_utr;Parent=Msa0717540-mRNA-1
chr5_1 CDS 11427282 11427386 11427282 ID=Msa0717540-mRNA-1:cds;Parent=Msa0717540-mRNA-1
chr5_1 CDS 11427592 11427823 11427592 ID=Msa0717540-mRNA-1:cds;Parent=Msa0717540-mRNA-1
chr5_1 CDS 11428355 11428488 11428355 ID=Msa0717540-mRNA-1:cds;Parent=Msa0717540-mRNA-1
chr5_1 CDS 11428767 11428845 11428767 ID=Msa0717540-mRNA-1:cds;Parent=Msa0717540-mRNA-1
chr5_1 CDS 11429157 11429248 11429157 ID=Msa0717540-mRNA-1:cds;Parent=Msa0717540-mRNA-1
chr5_1 CDS 11429366 11429443 11429366 ID=Msa0717540-mRNA-1:cds;Parent=Msa0717540-mRNA-1
chr5_1 CDS 11429724 11429786 11429724 ID=Msa0717540-mRNA-1:cds;Parent=Msa0717540-mRNA-1
chr5_1 CDS 11429888 11430122 11429888 ID=Msa0717540-mRNA-1:cds;Parent=Msa0717540-mRNA-1
chr5_1 CDS 11430322 11430389 11430322 ID=Msa0717540-mRNA-1:cds;Parent=Msa0717540-mRNA-1
chr5_1 three_prime_UTR 11430390 11430843 11430390 ID=Msa0717540-mRNA-1:three_prime_utr;Parent=Msa0717540-mRNA-1
Gene Sequence

>Msa0717540

ATGGCTGCTGCAGTTACAGCCGCCGTCTCTTTTCCATACTCCAACTCCACTTCTCTTCCGATCAGGACATCTGTTATTTCCCCTGATAGACTTGTCTTCAAAAAGGTTTCATTGAATAATGTTTCTATAAGTGGAAGGGTAACCGTGAGAGCCGAAGTTGCTACAGAAGCACCTGCTCCTGTTAAGGTAGAAAAGATATCAAAGAAACAGGAGGAAGGTATTGTTGTGAACAAGTTCAAACCAAAGACACCATACATTGGGAGGTGTCTTCTCAACACAAAGATCACTGGTGATGATGCACCTGGTGAAACTTGGCACATGGTTTTCAGCACTGAGGGAGAGGTTCCTTACAGAGAAGGACAGTCAATTGGGATAGTTCCAGATGGTATTGACAAGAATGGAAAGCCTCACAAGCTGAGATTGTATTCAATTGCTAGCAGTGCTCTTGGTGATTTTGGAGACTCCAAAACTGTTTCTCTCTGTGTGAAACGTCTTGTGTACACAAATGATGCCGGAGAAGTTGTTAAGGGAGTCTGCTCTAATTTCTTGTGCGACTTGAAGCCTGGATCTGAAGTACAGATTACTGGCCCAGTTGGTAAAGAAATGCTTATGCCAAAAGATCCTAATGCCACCGTCATCATGTTGGGAACTGGTACTGGAATTGCCCCATTCCGCTCATTTTTATGGAAAATGTTCTTCGAGAAGCATGAAGATTACAAGTTCAATGGTTTGGCATGGCTCTTCTTGGGTGTCCCCACAAGCAGCTCACTGCTTTATAAGGAGGAATTTGAAAAGATGAAGGAGAAAGCACCTGAGAACTTCAGGCTTGACTTTGCTGTGAGCAGAGAACAAGTAAACGACAAAGGAGAGAAAATGTACATCCAAACCAGAATGGCACAATACGCAGAAGAGTTGTGGGAATTACTGAAGAAAGACAACACTTTTGTTTACATGTGTGGACTGAAAGGAATGGAGAAGGGAATTGATGACATAATGGTTTCACTCGCTGCCAAAGAAGGTATTGATTGGACCGAGTACAAGAGACAGTTGAAGAAGGCAGAGCAATGGAATGTTGAAGTCTATTGA

Protein sequence

>Msa0717540

MAAAVTAAVSFPYSNSTSLPIRTSVISPDRLVFKKVSLNNVSISGRVTVRAEVATEAPAPVKVEKISKKQEEGIVVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYREGQSIGIVPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDAGEVVKGVCSNFLCDLKPGSEVQITGPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQVNDKGEKMYIQTRMAQYAEELWELLKKDNTFVYMCGLKGMEKGIDDIMVSLAAKEGIDWTEYKRQLKKAEQWNVEVY*