AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0358750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0358750 MtrunA17_Chr3g0095461 98.851 261 3 0 1 261 1 261 0.0 533
Msa0358750 MtrunA17_Chr5g0442381 73.507 268 62 4 2 261 3 269 1.22e-132 375
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0358750 AT1G06680.1 74.717 265 61 2 1 261 1 263 2.43e-140 395
Msa0358750 AT1G06680.2 83.333 180 30 0 82 261 40 219 4.36e-110 317
Msa0358750 AT2G30790.1 80.000 125 25 0 137 261 1 125 3.78e-70 212

Find 87 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAGACAAGAGGTGGTTTA+AGG 0.210913 3_1:+44318182 Msa0358750:CDS
CTTGGAAAACAAGCCTTCTT+TGG 0.229953 3_1:+44317599 Msa0358750:CDS
TTGGATTTGAAGTGGATAAT+TGG 0.238208 3_1:-44315636 None:intergenic
TTGCTTGGATTCCACTTTGC+TGG 0.251510 3_1:-44316850 None:intergenic
GAAGAAATCAACCTCGTAAA+TGG 0.255505 3_1:+44318422 Msa0358750:three_prime_UTR
TTCACCAAAGTTCTTAATTT+AGG 0.265359 3_1:-44318250 None:intergenic
TTCGTTGCAGCCAATGTCTT+TGG 0.280236 3_1:+44316766 Msa0358750:intron
TGGAGTTGTAAGAGCATATT+GGG 0.306962 3_1:-44315830 None:intergenic
TCCTGAGGAGTTCCTATCTA+AGG 0.308940 3_1:+44316987 Msa0358750:CDS
CTTTGAATTACATTTAGATA+TGG 0.310025 3_1:-44315700 None:intergenic
ATGGAGTTGTAAGAGCATAT+TGG 0.315427 3_1:-44315831 None:intergenic
AACAATATGGTTTGGTTTGT+TGG 0.330765 3_1:-44315884 None:intergenic
ATTGAACATGTGGTTGGTTT+TGG 0.331888 3_1:-44315662 None:intergenic
ACAATTAGACTCTAGCAAAA+TGG 0.365755 3_1:+44315783 Msa0358750:exon
GGGAACTCTCTCTCTTTGCT+TGG 0.385361 3_1:-44316865 None:intergenic
CGTTGAGACAAACTTCTAGA+TGG 0.405538 3_1:-44315850 None:intergenic
AAATTACCTCTGAATCAGTT+TGG 0.412596 3_1:-44317622 None:intergenic
GTTGCCTAAATTAAGAACTT+TGG 0.414675 3_1:+44318246 Msa0358750:exon
GGAGACAAGAGGTGGTTTAA+GGG 0.417477 3_1:+44318183 Msa0358750:CDS
TTGAATCCATCTCCATTGTA+TGG 0.419187 3_1:-44316817 None:intergenic
GAGAGTTCAGCACCAGTGAT+TGG 0.419628 3_1:+44318036 Msa0358750:CDS
CTCCTTGGTGCTGCTGCTGT+TGG 0.429596 3_1:+44315979 Msa0358750:CDS
TTTCACCATTGTTCCACCAT+TGG 0.430359 3_1:+44318538 Msa0358750:three_prime_UTR
CTTATTCTTATGTAAGCACT+TGG 0.430467 3_1:+44318296 Msa0358750:three_prime_UTR
TGCATTTGTGATGTGGGATA+AGG 0.430538 3_1:-44315602 None:intergenic
AAAGGATATGCTCCGGCTCT+TGG 0.431784 3_1:+44318462 Msa0358750:three_prime_UTR
TCTGTGCCTTGCAAACAATA+TGG 0.436546 3_1:-44315897 None:intergenic
TGAATCAGTTTGGCCAAAGA+AGG 0.439035 3_1:-44317612 None:intergenic
TTGCAGGTGGACTATTTGCT+TGG 0.444087 3_1:+44317581 Msa0358750:intron
AGATTCTTAAAACCTTAGAT+AGG 0.450368 3_1:-44316999 None:intergenic
TTAGCACTTTCTGTACTCCT+TGG 0.453497 3_1:+44315964 Msa0358750:CDS
CTTTGCCTTTCCAAAGACAT+TGG 0.454759 3_1:-44316776 None:intergenic
TATGAATGAGACTGAGAGTA+GGG 0.459488 3_1:-44315739 None:intergenic
ATATGGTTTAAAATTCTCAA+TGG 0.467800 3_1:-44318381 None:intergenic
TGATGTGGGATAAGGTTGTA+AGG 0.467999 3_1:-44315594 None:intergenic
AGAGAGAGAGTTCCCTGGTC+AGG 0.474121 3_1:+44316873 Msa0358750:CDS
TACATTTGCAAGGCTCAAGC+TGG 0.486606 3_1:+44318162 Msa0358750:CDS
ATTACAGCAACTGTAAATGA+TGG 0.489996 3_1:+44318132 Msa0358750:CDS
GCCTTGCAAACAATATGGTT+TGG 0.497299 3_1:-44315892 None:intergenic
TCTCCATAGGCAGCATCAGC+AGG 0.502473 3_1:-44316015 None:intergenic
TCACCTGCTGATGCTGCCTA+TGG 0.505052 3_1:+44316012 Msa0358750:CDS
TTTGATTGCATTTGTGATGT+GGG 0.512792 3_1:-44315608 None:intergenic
TTACAGTTGCTGTAATCAGC+TGG 0.513113 3_1:-44318125 None:intergenic
ATATGAATGAGACTGAGAGT+AGG 0.515599 3_1:-44315740 None:intergenic
TAAATTAAGAACTTTGGTGA+AGG 0.520267 3_1:+44318252 Msa0358750:exon
GATGCTGCCTATGGAGAAGC+TGG 0.528839 3_1:+44316021 Msa0358750:CDS
CTGTCAGTGTTGTTTCTCGT+AGG 0.529367 3_1:+44315941 Msa0358750:CDS
ACCTTAGATAGGAACTCCTC+AGG 0.530810 3_1:-44316988 None:intergenic
TACTGTTTCCCACCAATCAC+TGG 0.540361 3_1:-44318048 None:intergenic
GTCAGTTGTTTGGACAAGAA+CGG 0.541430 3_1:-44316938 None:intergenic
CGATATCTTCAACCAAGAGC+CGG 0.542101 3_1:-44318474 None:intergenic
ACCAAACCATATTGTTTGCA+AGG 0.544470 3_1:+44315891 Msa0358750:CDS
AACTGTTGGTTCCAGCAAAG+TGG 0.546443 3_1:+44316839 Msa0358750:CDS
TCGTATCTAAGAACCTGACC+AGG 0.546447 3_1:-44316886 None:intergenic
ATTTGATTGCATTTGTGATG+TGG 0.551626 3_1:-44315609 None:intergenic
TTTGGATATTGGATTTGAAG+TGG 0.551682 3_1:-44315644 None:intergenic
TGTGGCATTGAACATGTGGT+TGG 0.552144 3_1:-44315668 None:intergenic
AAATTAAGAACTTTGGTGAA+GGG 0.554191 3_1:+44318253 Msa0358750:exon
CTTTGGCCAAACTGATTCAG+AGG 0.554518 3_1:+44317616 Msa0358750:CDS
TGGAGATGGATTCAAACTGT+TGG 0.556213 3_1:+44316825 Msa0358750:CDS
TGCAGCCAATGTCTTTGGAA+AGG 0.567085 3_1:+44316771 Msa0358750:intron
GATAAATAAAAGTATCTCAA+AGG 0.567547 3_1:+44318444 Msa0358750:three_prime_UTR
TAAGATGTTTGCCACAGCTA+CGG 0.572617 3_1:-44318013 None:intergenic
AGTTCAGCACCAGTGATTGG+TGG 0.574912 3_1:+44318039 Msa0358750:CDS
GTATCTCAAAGGATATGCTC+CGG 0.577294 3_1:+44318455 Msa0358750:three_prime_UTR
CTGATGTGGCATTGAACATG+TGG 0.579978 3_1:-44315672 None:intergenic
GTTCAGCACCAGTGATTGGT+GGG 0.588274 3_1:+44318040 Msa0358750:CDS
AGGACTGCTGATGGAGATGA+AGG 0.590065 3_1:+44318093 Msa0358750:CDS
TGATACAAATGCCGTAGCTG+TGG 0.593917 3_1:+44318002 Msa0358750:CDS
AGCAAAGAGAGAGAGTTCCC+TGG 0.594993 3_1:+44316868 Msa0358750:CDS
TGGAAAACTATACATTTGCA+AGG 0.616807 3_1:+44318152 Msa0358750:CDS
GGGAGCAAGAAAGTTTGTTG+AGG 0.618163 3_1:+44318203 Msa0358750:CDS
GGCACAGAAACAAGAAGTTG+AGG 0.624235 3_1:+44315912 Msa0358750:CDS
GTGCAAGAAGCATTGTGTAG+AGG 0.636043 3_1:-44315806 None:intergenic
CTCCTCAGGAGAACCATAGT+CGG 0.636874 3_1:-44316974 None:intergenic
AGCCAACAGCAGCAGCACCA+AGG 0.639865 3_1:-44315981 None:intergenic
AGGCTCAAGCTGGAGACAAG+AGG 0.642347 3_1:+44318172 Msa0358750:CDS
TTGATCCAATGGTGGAACAA+TGG 0.649133 3_1:-44318543 None:intergenic
GAGTAGGGAGAGAGTGTGTG+TGG 0.649481 3_1:-44315724 None:intergenic
TAGATATGGTGTGTCTGATG+TGG 0.653512 3_1:-44315686 None:intergenic
CTCAAGCTGGAGACAAGAGG+TGG 0.660302 3_1:+44318175 Msa0358750:CDS
ACTGCTGATGGAGATGAAGG+TGG 0.671218 3_1:+44318096 Msa0358750:CDS
GGAGTTGTAAGAGCATATTG+GGG 0.678383 3_1:-44315829 None:intergenic
CACCGACTATGGTTCTCCTG+AGG 0.692239 3_1:+44316972 Msa0358750:CDS
CGTATCTAAGAACCTGACCA+GGG 0.700077 3_1:-44316885 None:intergenic
TGGTCAGGTTCTTAGATACG+AGG 0.713849 3_1:+44316888 Msa0358750:CDS
GAGTTGTAAGAGCATATTGG+GGG 0.741082 3_1:-44315828 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAAAATATATGTTCATA+AGG - chr3_1:44317177-44317196 None:intergenic 10.0%
!! TCTAAAGATGAAAAAAAATA+AGG - chr3_1:44316061-44316080 None:intergenic 15.0%
!!! TATTCTAAGTAGTATTTTAA+AGG - chr3_1:44316364-44316383 None:intergenic 15.0%
!! TTGTTTAATATTTAATCGAA+CGG + chr3_1:44316392-44316411 Msa0358750:intron 15.0%
!!! AATAACTGATTTTTCATATA+TGG - chr3_1:44318401-44318420 None:intergenic 15.0%
!! ATATATGAAAAATCAGTTAT+TGG + chr3_1:44318400-44318419 Msa0358750:three_prime_UTR 15.0%
!! CTTTGAATTACATTTAGATA+TGG - chr3_1:44315703-44315722 None:intergenic 20.0%
!!! GAATACAATTTTCTAATCTT+AGG - chr3_1:44316103-44316122 None:intergenic 20.0%
!! AAATATAATCAGAATAGTTG+TGG + chr3_1:44316571-44316590 Msa0358750:intron 20.0%
!!! ATGTTAATCACATTTTACTT+TGG + chr3_1:44316606-44316625 Msa0358750:intron 20.0%
!!! TTAGAAATTTGAAGTTATAG+AGG - chr3_1:44317295-44317314 None:intergenic 20.0%
!!! ATATGGTTTAAAATTCTCAA+TGG - chr3_1:44318384-44318403 None:intergenic 20.0%
!!! GATAAATAAAAGTATCTCAA+AGG + chr3_1:44318444-44318463 Msa0358750:three_prime_UTR 20.0%
! AAGTTGTTTATAAATGTGAC+CGG + chr3_1:44316202-44316221 Msa0358750:intron 25.0%
! TTTAATATTTAATCGAACGG+TGG + chr3_1:44316395-44316414 Msa0358750:intron 25.0%
! AGAAATCAAATGAAAACTAG+TGG + chr3_1:44316647-44316666 Msa0358750:intron 25.0%
! AGATTCTTAAAACCTTAGAT+AGG - chr3_1:44317002-44317021 None:intergenic 25.0%
! TCAACAAATATTGTATGTTG+AGG - chr3_1:44317211-44317230 None:intergenic 25.0%
! TTCCATTTGGAAAAATAGTT+TGG + chr3_1:44317370-44317389 Msa0358750:intron 25.0%
!!! AACCAAACTATTTTTCCAAA+TGG - chr3_1:44317375-44317394 None:intergenic 25.0%
!!! TAGTTTGGTTCAATGATTTT+TGG + chr3_1:44317385-44317404 Msa0358750:intron 25.0%
! AAAATGCCTTTGAACTTTAA+GGG + chr3_1:44317512-44317531 Msa0358750:intron 25.0%
! TTCACCAAAGTTCTTAATTT+AGG - chr3_1:44318253-44318272 None:intergenic 25.0%
! TAAATTAAGAACTTTGGTGA+AGG + chr3_1:44318252-44318271 Msa0358750:exon 25.0%
! AAATTAAGAACTTTGGTGAA+GGG + chr3_1:44318253-44318272 Msa0358750:exon 25.0%
!!! ACTTGGAGTTTTAATCATAA+TGG + chr3_1:44318313-44318332 Msa0358750:three_prime_UTR 25.0%
!!! CTTTTATTTATCCATTTACG+AGG - chr3_1:44318436-44318455 None:intergenic 25.0%
TTTGATTGCATTTGTGATGT+GGG - chr3_1:44315611-44315630 None:intergenic 30.0%
ATTTGATTGCATTTGTGATG+TGG - chr3_1:44315612-44315631 None:intergenic 30.0%
! TTGGATTTGAAGTGGATAAT+TGG - chr3_1:44315639-44315658 None:intergenic 30.0%
TTTGGATATTGGATTTGAAG+TGG - chr3_1:44315647-44315666 None:intergenic 30.0%
ACAATTAGACTCTAGCAAAA+TGG + chr3_1:44315783-44315802 Msa0358750:exon 30.0%
!! AACAATATGGTTTGGTTTGT+TGG - chr3_1:44315887-44315906 None:intergenic 30.0%
CATTATATAACTGACGTATC+TGG - chr3_1:44316167-44316186 None:intergenic 30.0%
TCGTTTGATCTTTAATCCAA+TGG + chr3_1:44316249-44316268 Msa0358750:intron 30.0%
TTTGATCTTTAATCCAATGG+TGG + chr3_1:44316252-44316271 Msa0358750:intron 30.0%
ACCATTGTATGAAGATTAGA+CGG + chr3_1:44316310-44316329 Msa0358750:intron 30.0%
TCAAATGAAAACTAGTGGTT+TGG + chr3_1:44316652-44316671 Msa0358750:intron 30.0%
! TGTTCTTTTTGTCAGTTGTT+TGG - chr3_1:44316951-44316970 None:intergenic 30.0%
CAAATTTCTAAATTCGTCAC+TGG + chr3_1:44317304-44317323 Msa0358750:intron 30.0%
CAAATAAGATTACCACCAAT+AGG + chr3_1:44317334-44317353 Msa0358750:intron 30.0%
ATTCTTCTACTTAATGTACG+AGG + chr3_1:44317421-44317440 Msa0358750:intron 30.0%
GAAAATGCCTTTGAACTTTA+AGG + chr3_1:44317511-44317530 Msa0358750:intron 30.0%
TTATTGCCCTTAAAGTTCAA+AGG - chr3_1:44317521-44317540 None:intergenic 30.0%
! CTTGGCTGAAATTTAAGATT+TGG + chr3_1:44317549-44317568 Msa0358750:intron 30.0%
AAATTACCTCTGAATCAGTT+TGG - chr3_1:44317625-44317644 None:intergenic 30.0%
ACAGTACATTTCATAATGCA+GGG - chr3_1:44317666-44317685 None:intergenic 30.0%
!! CATCATCTTTTAAGGAAATC+TGG - chr3_1:44317693-44317712 None:intergenic 30.0%
! CCAATATGCATCATCTTTTA+AGG - chr3_1:44317701-44317720 None:intergenic 30.0%
CCTTAAAAGATGATGCATAT+TGG + chr3_1:44317698-44317717 Msa0358750:intron 30.0%
TTGAATGTAACCACATTTGT+CGG + chr3_1:44317816-44317835 Msa0358750:intron 30.0%
ATGATGAGTTGTGCTAATAA+GGG - chr3_1:44317945-44317964 None:intergenic 30.0%
AATGATGAGTTGTGCTAATA+AGG - chr3_1:44317946-44317965 None:intergenic 30.0%
!! ACAACATATCAGTTTTGACA+AGG + chr3_1:44318073-44318092 Msa0358750:CDS 30.0%
ATTACAGCAACTGTAAATGA+TGG + chr3_1:44318132-44318151 Msa0358750:CDS 30.0%
TGGAAAACTATACATTTGCA+AGG + chr3_1:44318152-44318171 Msa0358750:CDS 30.0%
GTTGCCTAAATTAAGAACTT+TGG + chr3_1:44318246-44318265 Msa0358750:exon 30.0%
CTTATTCTTATGTAAGCACT+TGG + chr3_1:44318296-44318315 Msa0358750:three_prime_UTR 30.0%
!!! ATGTGGTTGGTTTTGGATAT+TGG - chr3_1:44315658-44315677 None:intergenic 35.0%
!!! ATTGAACATGTGGTTGGTTT+TGG - chr3_1:44315665-44315684 None:intergenic 35.0%
TATGAATGAGACTGAGAGTA+GGG - chr3_1:44315742-44315761 None:intergenic 35.0%
ATATGAATGAGACTGAGAGT+AGG - chr3_1:44315743-44315762 None:intergenic 35.0%
! TGGAGTTGTAAGAGCATATT+GGG - chr3_1:44315833-44315852 None:intergenic 35.0%
! ATGGAGTTGTAAGAGCATAT+TGG - chr3_1:44315834-44315853 None:intergenic 35.0%
ACCAAACCATATTGTTTGCA+AGG + chr3_1:44315891-44315910 Msa0358750:CDS 35.0%
AAAAATACCAGCTTCTCCAT+AGG - chr3_1:44316031-44316050 None:intergenic 35.0%
TTGTTTATAAATGTGACCGG+AGG + chr3_1:44316205-44316224 Msa0358750:intron 35.0%
TGTTTATAAATGTGACCGGA+GGG + chr3_1:44316206-44316225 Msa0358750:intron 35.0%
ATAGCTCATGCATGTTATGT+TGG + chr3_1:44316494-44316513 Msa0358750:intron 35.0%
CTTATTCTCAAAGTCACTCT+TGG - chr3_1:44316725-44316744 None:intergenic 35.0%
! ACAGACTTTTTGCCATACAA+TGG + chr3_1:44316805-44316824 Msa0358750:CDS 35.0%
! TTTTTGCCATACAATGGAGA+TGG + chr3_1:44316811-44316830 Msa0358750:CDS 35.0%
TTGAATCCATCTCCATTGTA+TGG - chr3_1:44316820-44316839 None:intergenic 35.0%
! AAAAAGAACATCACCGACTA+TGG + chr3_1:44316961-44316980 Msa0358750:CDS 35.0%
! ATATTTTACAACCGTTCTCG+AGG + chr3_1:44317076-44317095 Msa0358750:intron 35.0%
! TATTTTACAACCGTTCTCGA+GGG + chr3_1:44317077-44317096 Msa0358750:intron 35.0%
ACATTAAATTCCCTCGAGAA+CGG - chr3_1:44317090-44317109 None:intergenic 35.0%
TCGAGGGAATTTAATGTTAC+AGG + chr3_1:44317093-44317112 Msa0358750:intron 35.0%
TTTCTAAATTCGTCACTGGT+TGG + chr3_1:44317308-44317327 Msa0358750:intron 35.0%
AATCCAAAGATAGCTCCTAT+TGG - chr3_1:44317352-44317371 None:intergenic 35.0%
AGCTATCTTTGGATTCCATT+TGG + chr3_1:44317357-44317376 Msa0358750:intron 35.0%
TTCTACTTAATGTACGAGGA+AGG + chr3_1:44317425-44317444 Msa0358750:intron 35.0%
AAAAATCGACGAATGTTCAG+TGG + chr3_1:44317460-44317479 Msa0358750:intron 35.0%
AGGGCAATAACAAAAGTTCT+TGG + chr3_1:44317531-44317550 Msa0358750:intron 35.0%
!!! GATTTGGTTTTGATCTTTGC+AGG + chr3_1:44317565-44317584 Msa0358750:intron 35.0%
CACAGTACATTTCATAATGC+AGG - chr3_1:44317667-44317686 None:intergenic 35.0%
TCTATGTGTGAGTTCATATC+TGG - chr3_1:44317765-44317784 None:intergenic 35.0%
TTTCTGAACTTGAATTCCTC+AGG + chr3_1:44317972-44317991 Msa0358750:intron 35.0%
TTCTGAACTTGAATTCCTCA+GGG + chr3_1:44317973-44317992 Msa0358750:intron 35.0%
GAAGAAATCAACCTCGTAAA+TGG + chr3_1:44318422-44318441 Msa0358750:three_prime_UTR 35.0%
TGATGTGGGATAAGGTTGTA+AGG - chr3_1:44315597-44315616 None:intergenic 40.0%
TGCATTTGTGATGTGGGATA+AGG - chr3_1:44315605-44315624 None:intergenic 40.0%
TAGATATGGTGTGTCTGATG+TGG - chr3_1:44315689-44315708 None:intergenic 40.0%
! GAGTTGTAAGAGCATATTGG+GGG - chr3_1:44315831-44315850 None:intergenic 40.0%
! GGAGTTGTAAGAGCATATTG+GGG - chr3_1:44315832-44315851 None:intergenic 40.0%
CGTTGAGACAAACTTCTAGA+TGG - chr3_1:44315853-44315872 None:intergenic 40.0%
GCCTTGCAAACAATATGGTT+TGG - chr3_1:44315895-44315914 None:intergenic 40.0%
TCTGTGCCTTGCAAACAATA+TGG - chr3_1:44315900-44315919 None:intergenic 40.0%
TTAGCACTTTCTGTACTCCT+TGG + chr3_1:44315964-44315983 Msa0358750:CDS 40.0%
GCCGTCTAATCTTCATACAA+TGG - chr3_1:44316314-44316333 None:intergenic 40.0%
CTTTGCCTTTCCAAAGACAT+TGG - chr3_1:44316779-44316798 None:intergenic 40.0%
! TGGAGATGGATTCAAACTGT+TGG + chr3_1:44316825-44316844 Msa0358750:CDS 40.0%
GTCAGTTGTTTGGACAAGAA+CGG - chr3_1:44316941-44316960 None:intergenic 40.0%
!!! TTGGTTTTGATCTTTGCAGG+TGG + chr3_1:44317568-44317587 Msa0358750:intron 40.0%
CTTGGAAAACAAGCCTTCTT+TGG + chr3_1:44317599-44317618 Msa0358750:CDS 40.0%
TGAATCAGTTTGGCCAAAGA+AGG - chr3_1:44317615-44317634 None:intergenic 40.0%
ACCAACAATTCGAATCGAAG+GGG - chr3_1:44317882-44317901 None:intergenic 40.0%
CACCAACAATTCGAATCGAA+GGG - chr3_1:44317883-44317902 None:intergenic 40.0%
ACACCAACAATTCGAATCGA+AGG - chr3_1:44317884-44317903 None:intergenic 40.0%
TTTGTATCAAAACCACCCTG+AGG - chr3_1:44317991-44318010 None:intergenic 40.0%
TAAGATGTTTGCCACAGCTA+CGG - chr3_1:44318016-44318035 None:intergenic 40.0%
TTACAGTTGCTGTAATCAGC+TGG - chr3_1:44318128-44318147 None:intergenic 40.0%
GTATCTCAAAGGATATGCTC+CGG + chr3_1:44318455-44318474 Msa0358750:three_prime_UTR 40.0%
TTTCACCATTGTTCCACCAT+TGG + chr3_1:44318538-44318557 Msa0358750:three_prime_UTR 40.0%
! TTGATCCAATGGTGGAACAA+TGG - chr3_1:44318546-44318565 None:intergenic 40.0%
! TGTGGCATTGAACATGTGGT+TGG - chr3_1:44315671-44315690 None:intergenic 45.0%
! CTGATGTGGCATTGAACATG+TGG - chr3_1:44315675-44315694 None:intergenic 45.0%
!! GTGCAAGAAGCATTGTGTAG+AGG - chr3_1:44315809-44315828 None:intergenic 45.0%
GGCACAGAAACAAGAAGTTG+AGG + chr3_1:44315912-44315931 Msa0358750:CDS 45.0%
!! CTGTCAGTGTTGTTTCTCGT+AGG + chr3_1:44315941-44315960 Msa0358750:CDS 45.0%
GCTCTAACTTATACTCCCTC+CGG - chr3_1:44316224-44316243 None:intergenic 45.0%
TAGTCTCAAGTCTCCACCAT+TGG - chr3_1:44316268-44316287 None:intergenic 45.0%
TTCGTTGCAGCCAATGTCTT+TGG + chr3_1:44316766-44316785 Msa0358750:intron 45.0%
! TGCAGCCAATGTCTTTGGAA+AGG + chr3_1:44316771-44316790 Msa0358750:intron 45.0%
!! AACTGTTGGTTCCAGCAAAG+TGG + chr3_1:44316839-44316858 Msa0358750:CDS 45.0%
TTGCTTGGATTCCACTTTGC+TGG - chr3_1:44316853-44316872 None:intergenic 45.0%
CGTATCTAAGAACCTGACCA+GGG - chr3_1:44316888-44316907 None:intergenic 45.0%
TCGTATCTAAGAACCTGACC+AGG - chr3_1:44316889-44316908 None:intergenic 45.0%
TGGTCAGGTTCTTAGATACG+AGG + chr3_1:44316888-44316907 Msa0358750:CDS 45.0%
TCCTGAGGAGTTCCTATCTA+AGG + chr3_1:44316987-44317006 Msa0358750:CDS 45.0%
ACCTTAGATAGGAACTCCTC+AGG - chr3_1:44316991-44317010 None:intergenic 45.0%
! TTCATAAGGTGTCAGCTCAG+TGG - chr3_1:44317163-44317182 None:intergenic 45.0%
CCAAAGATAGCTCCTATTGG+TGG - chr3_1:44317349-44317368 None:intergenic 45.0%
CCACCAATAGGAGCTATCTT+TGG + chr3_1:44317346-44317365 Msa0358750:intron 45.0%
!! TTGCAGGTGGACTATTTGCT+TGG + chr3_1:44317581-44317600 Msa0358750:intron 45.0%
! CTTTGGCCAAACTGATTCAG+AGG + chr3_1:44317616-44317635 Msa0358750:CDS 45.0%
GACATTGACACCGACAAATG+TGG - chr3_1:44317829-44317848 None:intergenic 45.0%
GTCAGACACTTAACACATGC+TGG + chr3_1:44317846-44317865 Msa0358750:intron 45.0%
! ACCCCTTCGATTCGAATTGT+TGG + chr3_1:44317878-44317897 Msa0358750:intron 45.0%
TGAACTTGAATTCCTCAGGG+TGG + chr3_1:44317976-44317995 Msa0358750:intron 45.0%
TGATACAAATGCCGTAGCTG+TGG + chr3_1:44318002-44318021 Msa0358750:CDS 45.0%
TACTGTTTCCCACCAATCAC+TGG - chr3_1:44318051-44318070 None:intergenic 45.0%
!! GTTTTGACAAGGACTGCTGA+TGG + chr3_1:44318084-44318103 Msa0358750:CDS 45.0%
TACATTTGCAAGGCTCAAGC+TGG + chr3_1:44318162-44318181 Msa0358750:CDS 45.0%
TGGAGACAAGAGGTGGTTTA+AGG + chr3_1:44318182-44318201 Msa0358750:CDS 45.0%
GGAGACAAGAGGTGGTTTAA+GGG + chr3_1:44318183-44318202 Msa0358750:CDS 45.0%
!! GGGAGCAAGAAAGTTTGTTG+AGG + chr3_1:44318203-44318222 Msa0358750:CDS 45.0%
CGATATCTTCAACCAAGAGC+CGG - chr3_1:44318477-44318496 None:intergenic 45.0%
ACTGCCTGAATCTGTGACTG+CGG + chr3_1:44316427-44316446 Msa0358750:intron 50.0%
TTCTCCGCAGTCACAGATTC+AGG - chr3_1:44316434-44316453 None:intergenic 50.0%
GGGAACTCTCTCTCTTTGCT+TGG - chr3_1:44316868-44316887 None:intergenic 50.0%
AGCAAAGAGAGAGAGTTCCC+TGG + chr3_1:44316868-44316887 Msa0358750:CDS 50.0%
CTCCTCAGGAGAACCATAGT+CGG - chr3_1:44316977-44316996 None:intergenic 50.0%
GAGAGTTCAGCACCAGTGAT+TGG + chr3_1:44318036-44318055 Msa0358750:CDS 50.0%
AGTTCAGCACCAGTGATTGG+TGG + chr3_1:44318039-44318058 Msa0358750:CDS 50.0%
GTTCAGCACCAGTGATTGGT+GGG + chr3_1:44318040-44318059 Msa0358750:CDS 50.0%
AGGACTGCTGATGGAGATGA+AGG + chr3_1:44318093-44318112 Msa0358750:CDS 50.0%
ACTGCTGATGGAGATGAAGG+TGG + chr3_1:44318096-44318115 Msa0358750:CDS 50.0%
AAAGGATATGCTCCGGCTCT+TGG + chr3_1:44318462-44318481 Msa0358750:three_prime_UTR 50.0%
! GAGTAGGGAGAGAGTGTGTG+TGG - chr3_1:44315727-44315746 None:intergenic 55.0%
TCACCTGCTGATGCTGCCTA+TGG + chr3_1:44316012-44316031 Msa0358750:CDS 55.0%
TCTCCATAGGCAGCATCAGC+AGG - chr3_1:44316018-44316037 None:intergenic 55.0%
GATGCTGCCTATGGAGAAGC+TGG + chr3_1:44316021-44316040 Msa0358750:CDS 55.0%
AGAGAGAGAGTTCCCTGGTC+AGG + chr3_1:44316873-44316892 Msa0358750:CDS 55.0%
! CACCGACTATGGTTCTCCTG+AGG + chr3_1:44316972-44316991 Msa0358750:CDS 55.0%
AGGCTCAAGCTGGAGACAAG+AGG + chr3_1:44318172-44318191 Msa0358750:CDS 55.0%
CTCAAGCTGGAGACAAGAGG+TGG + chr3_1:44318175-44318194 Msa0358750:CDS 55.0%
!! CTCCTTGGTGCTGCTGCTGT+TGG + chr3_1:44315979-44315998 Msa0358750:CDS 60.0%
AGCCAACAGCAGCAGCACCA+AGG - chr3_1:44315984-44316003 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 44315588 44318571 44315588 ID=Msa0358750;Name=Msa0358750
chr3_1 mRNA 44315588 44318571 44315588 ID=Msa0358750-mRNA-1;Parent=Msa0358750;Name=Msa0358750-mRNA-1;_AED=0.02;_eAED=0.02;_QI=214|1|1|1|1|1|4|317|261
chr3_1 exon 44315588 44316042 44315588 ID=Msa0358750-mRNA-1:exon:7850;Parent=Msa0358750-mRNA-1
chr3_1 exon 44316776 44317008 44316776 ID=Msa0358750-mRNA-1:exon:7851;Parent=Msa0358750-mRNA-1
chr3_1 exon 44317587 44317637 44317587 ID=Msa0358750-mRNA-1:exon:7852;Parent=Msa0358750-mRNA-1
chr3_1 exon 44317994 44318571 44317994 ID=Msa0358750-mRNA-1:exon:7853;Parent=Msa0358750-mRNA-1
chr3_1 five_prime_UTR 44315588 44315801 44315588 ID=Msa0358750-mRNA-1:five_prime_utr;Parent=Msa0358750-mRNA-1
chr3_1 CDS 44315802 44316042 44315802 ID=Msa0358750-mRNA-1:cds;Parent=Msa0358750-mRNA-1
chr3_1 CDS 44316776 44317008 44316776 ID=Msa0358750-mRNA-1:cds;Parent=Msa0358750-mRNA-1
chr3_1 CDS 44317587 44317637 44317587 ID=Msa0358750-mRNA-1:cds;Parent=Msa0358750-mRNA-1
chr3_1 CDS 44317994 44318254 44317994 ID=Msa0358750-mRNA-1:cds;Parent=Msa0358750-mRNA-1
chr3_1 three_prime_UTR 44318255 44318571 44318255 ID=Msa0358750-mRNA-1:three_prime_utr;Parent=Msa0358750-mRNA-1
Gene Sequence

>Msa0358750

ATGGCCTCTACACAATGCTTCTTGCACCCCCAATATGCTCTTACAACTCCATCTAGAAGTTTGTCTCAACGTCAAATTGTTACCAACAAACCAAACCATATTGTTTGCAAGGCACAGAAACAAGAAGTTGAGGATGTTGCTGTCAGTGTTGTTTCTCGTAGGTTAGCACTTTCTGTACTCCTTGGTGCTGCTGCTGTTGGCTCAAAAGTTTCACCTGCTGATGCTGCCTATGGAGAAGCTGCCAATGTCTTTGGAAAGGCAAAGACAAACACAGACTTTTTGCCATACAATGGAGATGGATTCAAACTGTTGGTTCCAGCAAAGTGGAATCCAAGCAAAGAGAGAGAGTTCCCTGGTCAGGTTCTTAGATACGAGGATAATTTTGATGCAACAAGCAATGTTTCCGTTCTTGTCCAAACAACTGACAAAAAGAACATCACCGACTATGGTTCTCCTGAGGAGTTCCTATCTAAGGTGGACTATTTGCTTGGAAAACAAGCCTTCTTTGGCCAAACTGATTCAGAGGGTGGTTTTGATACAAATGCCGTAGCTGTGGCAAACATCTTAGAGAGTTCAGCACCAGTGATTGGTGGGAAACAGTATTACAACATATCAGTTTTGACAAGGACTGCTGATGGAGATGAAGGTGGAAAGCACCAGCTGATTACAGCAACTGTAAATGATGGAAAACTATACATTTGCAAGGCTCAAGCTGGAGACAAGAGGTGGTTTAAGGGAGCAAGAAAGTTTGTTGAGGACACTGCAAGTTCTTTCAGTGTTGCCTAA

Protein sequence

>Msa0358750

MASTQCFLHPQYALTTPSRSLSQRQIVTNKPNHIVCKAQKQEVEDVAVSVVSRRLALSVLLGAAAVGSKVSPADAAYGEAANVFGKAKTNTDFLPYNGDGFKLLVPAKWNPSKEREFPGQVLRYEDNFDATSNVSVLVQTTDKKNITDYGSPEEFLSKVDYLLGKQAFFGQTDSEGGFDTNAVAVANILESSAPVIGGKQYYNISVLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFKGARKFVEDTASSFSVA*