Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517460 | XP_003602462.1 | 95.652 | 322 | 14 | 0 | 1 | 322 | 1 | 322 | 0.0 | 636 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517460 | sp|A7NY33|PER4_VITVI | 70.064 | 314 | 94 | 0 | 9 | 322 | 8 | 321 | 5.70e-165 | 464 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517460 | G7J9S1 | 95.652 | 322 | 14 | 0 | 1 | 322 | 1 | 322 | 0.0 | 636 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000610 | Msa0517460 | 0.816847 | 4.477646e-52 | -8.615850e-47 |
| Msa0004340 | Msa0517460 | 0.827315 | 1.674138e-54 | -8.615850e-47 |
| Msa0057270 | Msa0517460 | 0.804231 | 2.385138e-49 | -8.615850e-47 |
| Msa0080810 | Msa0517460 | 0.830849 | 2.329334e-55 | -8.615850e-47 |
| Msa0108500 | Msa0517460 | 0.801431 | 9.032550e-49 | -8.615850e-47 |
| Msa0111000 | Msa0517460 | 0.815590 | 8.553868e-52 | -8.615850e-47 |
| Msa0116470 | Msa0517460 | 0.810954 | 8.916866e-51 | -8.615850e-47 |
| Msa0116510 | Msa0517460 | 0.822977 | 1.774915e-53 | -8.615850e-47 |
| Msa0120320 | Msa0517460 | 0.822551 | 2.229277e-53 | -8.615850e-47 |
| Msa0143280 | Msa0517460 | 0.806672 | 7.341214e-50 | -8.615850e-47 |
| Msa0147540 | Msa0517460 | 0.824444 | 8.045897e-54 | -8.615850e-47 |
| Msa0160650 | Msa0517460 | 0.808647 | 2.794220e-50 | -8.615850e-47 |
| Msa0163530 | Msa0517460 | 0.828782 | 7.423626e-55 | -8.615850e-47 |
| Msa0173370 | Msa0517460 | 0.813214 | 2.866732e-51 | -8.615850e-47 |
| Msa0180100 | Msa0517460 | 0.815999 | 6.930792e-52 | -8.615850e-47 |
| Msa0184510 | Msa0517460 | 0.802216 | 6.233678e-49 | -8.615850e-47 |
| Msa0210790 | Msa0517460 | -0.806810 | 6.863589e-50 | -8.615850e-47 |
| Msa0210850 | Msa0517460 | -0.807520 | 4.855262e-50 | -8.615850e-47 |
| Msa0218430 | Msa0517460 | 0.819698 | 1.012981e-52 | -8.615850e-47 |
| Msa0240590 | Msa0517460 | 0.814771 | 1.299910e-51 | -8.615850e-47 |
| Msa0266140 | Msa0517460 | 0.812759 | 3.606749e-51 | -8.615850e-47 |
| Msa0279090 | Msa0517460 | 0.805358 | 1.387493e-49 | -8.615850e-47 |
| Msa0297270 | Msa0517460 | 0.812804 | 3.526243e-51 | -8.615850e-47 |
| Msa0304060 | Msa0517460 | 0.822555 | 2.224718e-53 | -8.615850e-47 |
| Msa0517460 | Msa0541470 | 0.804339 | 2.265745e-49 | -8.615850e-47 |
| Msa0517460 | Msa0562390 | 0.816777 | 4.642827e-52 | -8.615850e-47 |
| Msa0517460 | Msa0563230 | 0.818280 | 2.128682e-52 | -8.615850e-47 |
| Msa0517460 | Msa0565860 | 0.811608 | 6.430446e-51 | -8.615850e-47 |
| Msa0517460 | Msa0577050 | 0.828098 | 1.085782e-54 | -8.615850e-47 |
| Msa0517460 | Msa0592390 | 0.814486 | 1.503764e-51 | -8.615850e-47 |
| Msa0517460 | Msa0592400 | 0.800753 | 1.242811e-48 | -8.615850e-47 |
| Msa0517460 | Msa0617470 | 0.803833 | 2.886036e-49 | -8.615850e-47 |
| Msa0517460 | Msa0619390 | 0.826160 | 3.158826e-54 | -8.615850e-47 |
| Msa0517460 | Msa0619670 | -0.834112 | 3.618225e-56 | -8.615850e-47 |
| Msa0517460 | Msa0625900 | 0.802653 | 5.065866e-49 | -8.615850e-47 |
| Msa0517460 | Msa0634260 | 0.862880 | 3.703417e-64 | -8.615850e-47 |
| Msa0517460 | Msa0648260 | 0.801875 | 7.323030e-49 | -8.615850e-47 |
| Msa0517460 | Msa0663690 | 0.801743 | 7.797145e-49 | -8.615850e-47 |
| Msa0517460 | Msa0671070 | 0.813825 | 2.104070e-51 | -8.615850e-47 |
| Msa0517460 | Msa0691740 | 0.809565 | 1.777443e-50 | -8.615850e-47 |
| Msa0517460 | Msa0700250 | 0.804612 | 1.986820e-49 | -8.615850e-47 |
| Msa0517460 | Msa0754020 | 0.810335 | 1.213278e-50 | -8.615850e-47 |
| Msa0517460 | Msa0770540 | 0.800036 | 1.739682e-48 | -8.615850e-47 |
| Msa0517460 | Msa0803530 | 0.830110 | 3.532558e-55 | -8.615850e-47 |
| Msa0517460 | Msa0807100 | 0.806248 | 9.021408e-50 | -8.615850e-47 |
| Msa0517460 | Msa0813030 | 0.801279 | 9.703319e-49 | -8.615850e-47 |
| Msa0517460 | Msa0833030 | 0.811597 | 6.464586e-51 | -8.615850e-47 |
| Msa0517460 | Msa0861400 | 0.801691 | 7.990354e-49 | -8.615850e-47 |
| Msa0517460 | Msa0884300 | 0.816445 | 5.511104e-52 | -8.615850e-47 |
| Msa0517460 | Msa0949550 | 0.828383 | 9.269464e-55 | -8.615850e-47 |
| Msa0517460 | Msa0967250 | 0.808924 | 2.437961e-50 | -8.615850e-47 |
| Msa0517460 | Msa0975440 | 0.807512 | 4.875432e-50 | -8.615850e-47 |
| Msa0517460 | Msa1009240 | 0.805656 | 1.201654e-49 | -8.615850e-47 |
| Msa0517460 | Msa1050540 | 0.824199 | 9.188003e-54 | -8.615850e-47 |
| Msa0517460 | Msa1050640 | 0.852018 | 6.077232e-61 | -8.615850e-47 |
| Msa0517460 | Msa1070630 | 0.808543 | 2.941020e-50 | -8.615850e-47 |
| Msa0517460 | Msa1078590 | 0.812108 | 5.005350e-51 | -8.615850e-47 |
| Msa0517460 | Msa1078760 | 0.803334 | 3.663912e-49 | -8.615850e-47 |
| Msa0517460 | Msa1138440 | 0.832299 | 1.023326e-55 | -8.615850e-47 |
| Msa0517460 | Msa1140480 | 0.810624 | 1.050986e-50 | -8.615850e-47 |
| Msa0517460 | Msa1143860 | 0.804728 | 1.879320e-49 | -8.615850e-47 |
| Msa0517460 | Msa1158450 | 0.808718 | 2.698949e-50 | -8.615850e-47 |
| Msa0517460 | Msa1164570 | 0.800431 | 1.445886e-48 | -8.615850e-47 |
| Msa0517460 | Msa1169590 | 0.808853 | 2.524940e-50 | -8.615850e-47 |
| Msa0517460 | Msa1175850 | 0.804851 | 1.771172e-49 | -8.615850e-47 |
| Msa0517460 | Msa1182530 | 0.802171 | 6.366361e-49 | -8.615850e-47 |
| Msa0517460 | Msa1204470 | 0.813927 | 1.998170e-51 | -8.615850e-47 |
| Msa0517460 | Msa1205270 | 0.802031 | 6.803956e-49 | -8.615850e-47 |
| Msa0517460 | Msa1207710 | 0.802861 | 4.587974e-49 | -8.615850e-47 |
| Msa0517460 | Msa1225140 | 0.804938 | 1.698411e-49 | -8.615850e-47 |
| Msa0517460 | Msa1236860 | 0.801484 | 8.809934e-49 | -8.615850e-47 |
| Msa0517460 | Msa1256430 | 0.820989 | 5.125567e-53 | -8.615850e-47 |
| Msa0517460 | Msa1257960 | 0.810619 | 1.053324e-50 | -8.615850e-47 |
| Msa0517460 | Msa1277580 | 0.800637 | 1.312695e-48 | -8.615850e-47 |
| Msa0517460 | Msa1279320 | 0.813544 | 2.425563e-51 | -8.615850e-47 |
| Msa0517460 | Msa1296680 | 0.820175 | 7.878800e-53 | -8.615850e-47 |
| Msa0517460 | Msa1298980 | 0.809412 | 1.916257e-50 | -8.615850e-47 |
| Msa0517460 | Msa1329020 | 0.800013 | 1.758749e-48 | -8.615850e-47 |
| Msa0517460 | Msa1343450 | 0.806221 | 9.139680e-50 | -8.615850e-47 |
| Msa0517460 | Msa1348860 | 0.808246 | 3.403692e-50 | -8.615850e-47 |
| Msa0517460 | Msa1367900 | 0.800462 | 1.425267e-48 | -8.615850e-47 |
| Msa0517460 | Msa1376010 | 0.806991 | 6.286843e-50 | -8.615850e-47 |
| Msa0517460 | Msa1377980 | 0.804013 | 2.648188e-49 | -8.615850e-47 |
| Msa0517460 | Msa1384410 | 0.810433 | 1.155747e-50 | -8.615850e-47 |
| Msa0517460 | Msa1408280 | 0.802093 | 6.605700e-49 | -8.615850e-47 |
| Msa0517460 | Msa1408860 | 0.806872 | 6.661670e-50 | -8.615850e-47 |
| Msa0517460 | Msa1418840 | 0.805698 | 1.177366e-49 | -8.615850e-47 |
| Msa0517460 | Msa1422160 | 0.817537 | 3.133057e-52 | -8.615850e-47 |
| Msa0517460 | Msa1427260 | 0.813475 | 2.511595e-51 | -8.615850e-47 |
| Msa0517460 | Msa1436660 | 0.804877 | 1.749338e-49 | -8.615850e-47 |
| Msa0517460 | Msa1450780 | 0.845637 | 3.585784e-59 | -8.615850e-47 |
| Msa0517460 | Msa1460530 | 0.811290 | 7.536622e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517460 | MtrunA17_Chr3g0129051 | 95.652 | 322 | 14 | 0 | 1 | 322 | 1 | 322 | 0.0 | 636 |
| Msa0517460 | MtrunA17_Chr3g0129061 | 88.509 | 322 | 37 | 0 | 1 | 322 | 1 | 322 | 0.0 | 561 |
| Msa0517460 | MtrunA17_Chr3g0129041 | 86.335 | 322 | 44 | 0 | 1 | 322 | 1 | 322 | 0.0 | 543 |
| Msa0517460 | MtrunA17_Chr5g0438021 | 76.527 | 311 | 72 | 1 | 12 | 322 | 16 | 325 | 3.07e-171 | 478 |
| Msa0517460 | MtrunA17_Chr3g0106921 | 67.516 | 314 | 101 | 1 | 10 | 322 | 7 | 320 | 1.42e-155 | 438 |
| Msa0517460 | MtrunA17_Chr5g0432441 | 63.692 | 325 | 111 | 4 | 4 | 322 | 3 | 326 | 9.60e-147 | 416 |
| Msa0517460 | MtrunA17_Chr2g0320061 | 66.238 | 311 | 102 | 3 | 13 | 322 | 10 | 318 | 9.16e-144 | 408 |
| Msa0517460 | MtrunA17_Chr2g0320101 | 64.194 | 310 | 109 | 1 | 13 | 322 | 10 | 317 | 1.83e-142 | 405 |
| Msa0517460 | MtrunA17_Chr2g0320071 | 64.725 | 309 | 107 | 1 | 14 | 322 | 11 | 317 | 8.18e-142 | 403 |
| Msa0517460 | MtrunA17_Chr2g0320051 | 64.952 | 311 | 106 | 2 | 13 | 322 | 10 | 318 | 2.19e-141 | 402 |
| Msa0517460 | MtrunA17_Chr2g0320091 | 63.462 | 312 | 113 | 1 | 11 | 322 | 8 | 318 | 7.50e-140 | 398 |
| Msa0517460 | MtrunA17_Chr3g0114451 | 59.375 | 320 | 122 | 2 | 9 | 322 | 1 | 318 | 5.46e-135 | 385 |
| Msa0517460 | MtrunA17_Chr2g0320031 | 61.587 | 315 | 114 | 4 | 9 | 322 | 11 | 319 | 6.75e-134 | 383 |
| Msa0517460 | MtrunA17_Chr7g0244461 | 59.283 | 307 | 123 | 1 | 16 | 322 | 8 | 312 | 1.07e-133 | 382 |
| Msa0517460 | MtrunA17_Chr4g0038151 | 60.759 | 316 | 122 | 2 | 9 | 322 | 6 | 321 | 4.92e-132 | 378 |
| Msa0517460 | MtrunA17_Chr4g0038161 | 59.744 | 313 | 123 | 3 | 13 | 322 | 8 | 320 | 7.00e-130 | 373 |
| Msa0517460 | MtrunA17_Chr7g0244451 | 57.006 | 314 | 133 | 1 | 9 | 322 | 5 | 316 | 8.49e-129 | 370 |
| Msa0517460 | MtrunA17_Chr3g0106901 | 60.256 | 312 | 122 | 1 | 11 | 322 | 14 | 323 | 1.84e-128 | 369 |
| Msa0517460 | MtrunA17_Chr4g0038171 | 59.434 | 318 | 126 | 3 | 8 | 322 | 4 | 321 | 7.95e-128 | 368 |
| Msa0517460 | MtrunA17_Chr4g0043391 | 59.177 | 316 | 125 | 4 | 11 | 322 | 9 | 324 | 6.02e-127 | 365 |
| Msa0517460 | MtrunA17_Chr1g0213061 | 57.508 | 313 | 126 | 5 | 11 | 319 | 9 | 318 | 6.38e-123 | 355 |
| Msa0517460 | MtrunA17_Chr4g0013171 | 55.836 | 317 | 135 | 4 | 9 | 322 | 7 | 321 | 8.29e-122 | 352 |
| Msa0517460 | MtrunA17_Chr4g0013201 | 55.556 | 297 | 130 | 1 | 26 | 322 | 44 | 338 | 3.69e-121 | 351 |
| Msa0517460 | MtrunA17_Chr7g0224371 | 54.902 | 306 | 134 | 3 | 15 | 319 | 17 | 319 | 9.39e-118 | 342 |
| Msa0517460 | MtrunA17_Chr4g0013181 | 57.483 | 294 | 121 | 3 | 31 | 322 | 62 | 353 | 3.26e-117 | 342 |
| Msa0517460 | MtrunA17_Chr4g0013191 | 53.947 | 304 | 139 | 1 | 20 | 322 | 37 | 340 | 2.11e-116 | 339 |
| Msa0517460 | MtrunA17_Chr5g0432351 | 55.312 | 320 | 131 | 6 | 12 | 322 | 5 | 321 | 1.19e-115 | 337 |
| Msa0517460 | MtrunA17_Chr5g0432341 | 56.051 | 314 | 130 | 5 | 14 | 322 | 11 | 321 | 3.87e-115 | 335 |
| Msa0517460 | MtrunA17_Chr5g0432331 | 54.890 | 317 | 135 | 5 | 11 | 322 | 39 | 352 | 5.13e-115 | 336 |
| Msa0517460 | MtrunA17_Chr7g0258811 | 53.251 | 323 | 138 | 6 | 10 | 322 | 52 | 371 | 7.38e-115 | 337 |
| Msa0517460 | MtrunA17_Chr1g0175561 | 52.000 | 325 | 141 | 6 | 10 | 322 | 5 | 326 | 2.81e-110 | 323 |
| Msa0517460 | MtrunA17_Chr4g0070951 | 52.484 | 322 | 138 | 5 | 12 | 322 | 12 | 329 | 5.65e-110 | 323 |
| Msa0517460 | MtrunA17_Chr3g0107881 | 50.613 | 326 | 152 | 5 | 4 | 322 | 1 | 324 | 4.66e-108 | 317 |
| Msa0517460 | MtrunA17_Chr5g0404721 | 50.825 | 303 | 139 | 3 | 28 | 322 | 30 | 330 | 1.65e-106 | 314 |
| Msa0517460 | MtrunA17_Chr4g0068621 | 51.839 | 299 | 140 | 2 | 28 | 322 | 38 | 336 | 1.71e-105 | 311 |
| Msa0517460 | MtrunA17_Chr5g0402571 | 50.470 | 319 | 146 | 4 | 11 | 322 | 13 | 326 | 4.71e-105 | 310 |
| Msa0517460 | MtrunA17_Chr2g0299691 | 50.000 | 332 | 148 | 6 | 5 | 322 | 31 | 358 | 3.06e-103 | 306 |
| Msa0517460 | MtrunA17_Chr5g0402581 | 50.000 | 318 | 148 | 4 | 14 | 322 | 11 | 326 | 8.97e-103 | 304 |
| Msa0517460 | MtrunA17_Chr2g0292211 | 50.000 | 316 | 147 | 3 | 12 | 318 | 24 | 337 | 7.81e-102 | 303 |
| Msa0517460 | MtrunA17_Chr8g0372601 | 49.196 | 311 | 148 | 3 | 17 | 319 | 19 | 327 | 1.64e-101 | 301 |
| Msa0517460 | MtrunA17_Chr2g0292151 | 51.592 | 314 | 141 | 4 | 14 | 318 | 15 | 326 | 4.38e-101 | 301 |
| Msa0517460 | MtrunA17_Chr1g0155611 | 49.671 | 304 | 142 | 3 | 28 | 322 | 46 | 347 | 1.55e-100 | 299 |
| Msa0517460 | MtrunA17_Chr2g0292091 | 50.485 | 309 | 142 | 4 | 19 | 318 | 15 | 321 | 4.52e-100 | 298 |
| Msa0517460 | MtrunA17_Chr2g0292271 | 50.150 | 333 | 152 | 5 | 1 | 322 | 1 | 330 | 9.83e-100 | 297 |
| Msa0517460 | MtrunA17_Chr2g0292181 | 48.916 | 323 | 150 | 4 | 9 | 318 | 15 | 335 | 6.47e-99 | 296 |
| Msa0517460 | MtrunA17_Chr2g0292111 | 49.074 | 324 | 150 | 5 | 8 | 318 | 5 | 326 | 1.22e-98 | 295 |
| Msa0517460 | MtrunA17_Chr5g0400331 | 49.836 | 305 | 138 | 4 | 28 | 319 | 26 | 328 | 1.88e-98 | 293 |
| Msa0517460 | MtrunA17_Chr2g0291751 | 51.118 | 313 | 142 | 4 | 15 | 318 | 16 | 326 | 5.54e-98 | 293 |
| Msa0517460 | MtrunA17_Chr2g0292241 | 47.840 | 324 | 154 | 4 | 8 | 318 | 5 | 326 | 8.29e-98 | 293 |
| Msa0517460 | MtrunA17_Chr2g0292251 | 49.836 | 305 | 142 | 3 | 23 | 318 | 23 | 325 | 3.71e-97 | 291 |
| Msa0517460 | MtrunA17_Chr2g0292291 | 47.222 | 324 | 157 | 4 | 8 | 318 | 6 | 328 | 8.05e-97 | 290 |
| Msa0517460 | MtrunA17_Chr5g0432401 | 50.000 | 320 | 113 | 7 | 6 | 320 | 7 | 284 | 8.94e-97 | 287 |
| Msa0517460 | MtrunA17_Chr2g0292101 | 49.515 | 309 | 145 | 3 | 19 | 318 | 16 | 322 | 7.05e-96 | 287 |
| Msa0517460 | MtrunA17_Chr2g0292261 | 48.297 | 323 | 152 | 4 | 9 | 318 | 6 | 326 | 6.71e-95 | 285 |
| Msa0517460 | MtrunA17_Chr4g0013721 | 46.278 | 309 | 154 | 4 | 21 | 322 | 93 | 396 | 1.49e-94 | 286 |
| Msa0517460 | MtrunA17_Chr4g0013821 | 44.753 | 324 | 163 | 5 | 10 | 322 | 6 | 324 | 9.39e-94 | 282 |
| Msa0517460 | MtrunA17_Chr6g0477071 | 42.025 | 326 | 172 | 6 | 7 | 322 | 24 | 342 | 1.95e-86 | 263 |
| Msa0517460 | MtrunA17_Chr4g0024121 | 41.853 | 313 | 171 | 4 | 14 | 318 | 13 | 322 | 1.47e-85 | 260 |
| Msa0517460 | MtrunA17_Chr1g0188431 | 42.901 | 324 | 169 | 6 | 8 | 322 | 11 | 327 | 1.50e-85 | 260 |
| Msa0517460 | MtrunA17_Chr5g0421411 | 46.290 | 283 | 140 | 4 | 48 | 319 | 1 | 282 | 7.87e-85 | 257 |
| Msa0517460 | MtrunA17_Chr7g0225221 | 42.320 | 319 | 177 | 4 | 8 | 322 | 5 | 320 | 1.34e-84 | 258 |
| Msa0517460 | MtrunA17_Chr2g0322861 | 43.671 | 316 | 165 | 6 | 12 | 318 | 71 | 382 | 1.82e-82 | 254 |
| Msa0517460 | MtrunA17_Chr1g0204011 | 41.818 | 330 | 176 | 7 | 1 | 322 | 1 | 322 | 3.30e-81 | 249 |
| Msa0517460 | MtrunA17_Chr1g0157051 | 42.633 | 319 | 169 | 6 | 7 | 318 | 3 | 314 | 4.67e-80 | 246 |
| Msa0517460 | MtrunA17_Chr7g0268501 | 42.492 | 313 | 167 | 5 | 13 | 318 | 10 | 316 | 1.84e-79 | 244 |
| Msa0517460 | MtrunA17_Chr7g0268521 | 42.492 | 313 | 167 | 5 | 13 | 318 | 10 | 316 | 1.84e-79 | 244 |
| Msa0517460 | MtrunA17_Chr3g0128061 | 40.694 | 317 | 177 | 4 | 14 | 322 | 13 | 326 | 3.64e-79 | 244 |
| Msa0517460 | MtrunA17_Chr5g0405991 | 41.411 | 326 | 165 | 9 | 9 | 322 | 5 | 316 | 5.88e-78 | 240 |
| Msa0517460 | MtrunA17_Chr4g0063671 | 42.679 | 321 | 162 | 8 | 17 | 322 | 7 | 320 | 9.20e-78 | 240 |
| Msa0517460 | MtrunA17_Chr7g0254201 | 40.741 | 297 | 172 | 3 | 24 | 319 | 16 | 309 | 1.31e-75 | 234 |
| Msa0517460 | MtrunA17_Chr8g0371381 | 41.776 | 304 | 158 | 7 | 28 | 322 | 26 | 319 | 1.40e-75 | 234 |
| Msa0517460 | MtrunA17_Chr6g0460711 | 40.193 | 311 | 181 | 4 | 14 | 322 | 7 | 314 | 1.65e-74 | 232 |
| Msa0517460 | MtrunA17_Chr6g0467161 | 42.373 | 295 | 159 | 6 | 28 | 318 | 45 | 332 | 1.87e-73 | 229 |
| Msa0517460 | MtrunA17_Chr2g0279041 | 40.122 | 329 | 174 | 7 | 10 | 322 | 4 | 325 | 3.11e-73 | 229 |
| Msa0517460 | MtrunA17_Chr3g0114461 | 57.895 | 190 | 77 | 2 | 134 | 322 | 5 | 192 | 2.85e-72 | 221 |
| Msa0517460 | MtrunA17_Chr1g0194151 | 38.889 | 324 | 186 | 3 | 7 | 318 | 6 | 329 | 1.93e-71 | 224 |
| Msa0517460 | MtrunA17_Chr4g0075241 | 36.025 | 322 | 197 | 3 | 9 | 322 | 7 | 327 | 5.70e-70 | 220 |
| Msa0517460 | MtrunA17_Chr1g0148021 | 40.000 | 330 | 182 | 7 | 5 | 322 | 3 | 328 | 1.41e-69 | 219 |
| Msa0517460 | MtrunA17_Chr6g0467251 | 38.253 | 332 | 191 | 5 | 1 | 322 | 1 | 328 | 1.43e-69 | 220 |
| Msa0517460 | MtrunA17_Chr2g0296621 | 40.803 | 299 | 158 | 6 | 28 | 318 | 50 | 337 | 3.34e-69 | 219 |
| Msa0517460 | MtrunA17_Chr1g0164891 | 40.404 | 297 | 166 | 4 | 32 | 318 | 93 | 388 | 6.50e-69 | 220 |
| Msa0517460 | MtrunA17_Chr5g0401431 | 37.500 | 328 | 179 | 7 | 9 | 318 | 6 | 325 | 7.91e-69 | 218 |
| Msa0517460 | MtrunA17_Chr4g0053871 | 39.564 | 321 | 176 | 6 | 9 | 318 | 7 | 320 | 1.79e-68 | 216 |
| Msa0517460 | MtrunA17_Chr2g0278671 | 40.323 | 310 | 166 | 7 | 21 | 318 | 17 | 319 | 4.03e-67 | 213 |
| Msa0517460 | MtrunA17_Chr4g0046131 | 39.604 | 303 | 171 | 5 | 27 | 318 | 41 | 342 | 7.53e-67 | 213 |
| Msa0517460 | MtrunA17_Chr1g0194271 | 38.182 | 330 | 183 | 5 | 9 | 318 | 8 | 336 | 1.09e-66 | 213 |
| Msa0517460 | MtrunA17_Chr7g0254231 | 37.288 | 295 | 178 | 4 | 26 | 319 | 20 | 308 | 1.56e-66 | 211 |
| Msa0517460 | MtrunA17_Chr1g0197411 | 37.037 | 324 | 184 | 6 | 15 | 322 | 11 | 330 | 6.66e-66 | 210 |
| Msa0517460 | MtrunA17_Chr4g0076211 | 38.926 | 298 | 164 | 6 | 29 | 318 | 42 | 329 | 3.41e-65 | 208 |
| Msa0517460 | MtrunA17_Chr2g0329641 | 37.987 | 308 | 172 | 6 | 27 | 322 | 35 | 335 | 5.51e-65 | 208 |
| Msa0517460 | MtrunA17_Chr2g0316481 | 36.336 | 333 | 168 | 7 | 28 | 320 | 76 | 404 | 1.79e-64 | 209 |
| Msa0517460 | MtrunA17_Chr2g0316791 | 36.036 | 333 | 169 | 7 | 28 | 320 | 76 | 404 | 9.58e-64 | 207 |
| Msa0517460 | MtrunA17_Chr4g0072091 | 38.961 | 308 | 169 | 6 | 27 | 322 | 23 | 323 | 2.48e-63 | 203 |
| Msa0517460 | MtrunA17_Chr6g0451571 | 36.280 | 328 | 180 | 7 | 14 | 322 | 17 | 334 | 6.11e-63 | 202 |
| Msa0517460 | MtrunA17_Chr1g0181511 | 35.831 | 307 | 179 | 6 | 26 | 322 | 25 | 323 | 1.74e-62 | 201 |
| Msa0517460 | MtrunA17_Chr2g0316191 | 35.629 | 334 | 170 | 7 | 28 | 320 | 76 | 405 | 7.61e-62 | 202 |
| Msa0517460 | MtrunA17_Chr6g0467121 | 36.875 | 320 | 182 | 8 | 11 | 318 | 48 | 359 | 8.86e-61 | 198 |
| Msa0517460 | MtrunA17_Chr2g0316831 | 35.455 | 330 | 175 | 6 | 28 | 320 | 112 | 440 | 1.15e-60 | 200 |
| Msa0517460 | MtrunA17_Chr1g0181431 | 35.294 | 306 | 182 | 5 | 26 | 322 | 25 | 323 | 1.93e-60 | 196 |
| Msa0517460 | MtrunA17_Chr8g0364291 | 35.962 | 317 | 191 | 5 | 11 | 318 | 7 | 320 | 2.48e-60 | 196 |
| Msa0517460 | MtrunA17_Chr1g0181481 | 35.294 | 306 | 182 | 5 | 26 | 322 | 25 | 323 | 2.88e-60 | 195 |
| Msa0517460 | MtrunA17_Chr4g0074851 | 35.556 | 315 | 196 | 5 | 9 | 318 | 12 | 324 | 4.31e-60 | 195 |
| Msa0517460 | MtrunA17_Chr3g0136751 | 37.152 | 323 | 184 | 5 | 13 | 322 | 6 | 322 | 5.27e-60 | 194 |
| Msa0517460 | MtrunA17_Chr2g0311241 | 32.620 | 374 | 166 | 8 | 28 | 320 | 60 | 428 | 6.31e-58 | 192 |
| Msa0517460 | MtrunA17_Chr2g0279061 | 42.636 | 258 | 130 | 6 | 72 | 318 | 12 | 262 | 7.58e-58 | 187 |
| Msa0517460 | MtrunA17_Chr2g0311251 | 35.135 | 333 | 171 | 8 | 28 | 320 | 11 | 338 | 6.54e-57 | 187 |
| Msa0517460 | MtrunA17_Chr5g0413051 | 35.714 | 322 | 175 | 9 | 22 | 322 | 67 | 377 | 2.46e-52 | 176 |
| Msa0517460 | MtrunA17_Chr2g0292281 | 44.231 | 208 | 95 | 4 | 120 | 318 | 17 | 212 | 5.69e-47 | 158 |
| Msa0517460 | MtrunA17_Chr3g0114491 | 60.800 | 125 | 49 | 0 | 11 | 135 | 1 | 125 | 1.01e-46 | 154 |
| Msa0517460 | MtrunA17_Chr4g0004591 | 29.907 | 321 | 160 | 4 | 25 | 320 | 74 | 354 | 3.85e-44 | 154 |
| Msa0517460 | MtrunA17_Chr2g0316811 | 37.281 | 228 | 118 | 4 | 28 | 231 | 50 | 276 | 3.84e-42 | 148 |
| Msa0517460 | MtrunA17_Chr2g0316141 | 35.206 | 267 | 152 | 8 | 74 | 320 | 11 | 276 | 7.25e-40 | 141 |
| Msa0517460 | MtrunA17_Chr2g0316181 | 35.206 | 267 | 152 | 8 | 74 | 320 | 11 | 276 | 7.25e-40 | 141 |
| Msa0517460 | MtrunA17_Chr5g0432321 | 52.941 | 119 | 53 | 2 | 149 | 267 | 17 | 132 | 7.87e-34 | 120 |
| Msa0517460 | MtrunA17_Chr1g0181501 | 31.746 | 189 | 117 | 6 | 138 | 319 | 3 | 186 | 3.61e-27 | 105 |
| Msa0517460 | MtrunA17_Chr5g0432361 | 55.056 | 89 | 37 | 2 | 234 | 320 | 20 | 107 | 1.36e-25 | 98.6 |
| Msa0517460 | MtrunA17_Chr3g0104101 | 39.437 | 142 | 74 | 4 | 192 | 322 | 9 | 149 | 9.33e-24 | 95.1 |
| Msa0517460 | MtrunA17_Chr3g0137751 | 28.467 | 274 | 127 | 10 | 43 | 301 | 91 | 310 | 1.36e-22 | 95.9 |
| Msa0517460 | MtrunA17_Chr4g0013811 | 51.351 | 74 | 36 | 0 | 139 | 212 | 6 | 79 | 4.11e-22 | 88.6 |
| Msa0517460 | MtrunA17_Chr1g0181491 | 38.596 | 114 | 68 | 2 | 25 | 138 | 9 | 120 | 6.66e-22 | 90.1 |
| Msa0517460 | MtrunA17_Chr7g0254181 | 45.263 | 95 | 49 | 1 | 100 | 194 | 31 | 122 | 7.58e-21 | 87.4 |
| Msa0517460 | MtrunA17_Chr6g0468731 | 54.167 | 72 | 29 | 2 | 67 | 138 | 22 | 89 | 8.64e-19 | 79.7 |
| Msa0517460 | MtrunA17_Chr1g0196191 | 58.209 | 67 | 27 | 1 | 70 | 136 | 27 | 92 | 4.77e-17 | 77.0 |
| Msa0517460 | MtrunA17_Chr7g0268491 | 47.500 | 80 | 41 | 1 | 239 | 318 | 15 | 93 | 8.00e-17 | 74.7 |
| Msa0517460 | MtrunA17_Chr4g0037131 | 25.692 | 253 | 134 | 9 | 62 | 304 | 35 | 243 | 8.40e-15 | 73.6 |
| Msa0517460 | MtrunA17_Chr7g0254171 | 47.222 | 72 | 37 | 1 | 74 | 145 | 4 | 74 | 5.45e-14 | 68.2 |
| Msa0517460 | MtrunA17_Chr2g0316771 | 25.989 | 177 | 96 | 3 | 177 | 318 | 6 | 182 | 1.30e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517460 | AT5G05340.1 | 74.747 | 297 | 75 | 0 | 26 | 322 | 28 | 324 | 6.99e-164 | 459 |
| Msa0517460 | AT5G58400.1 | 62.620 | 313 | 115 | 2 | 12 | 322 | 13 | 325 | 1.67e-143 | 408 |
| Msa0517460 | AT5G58390.1 | 60.000 | 315 | 125 | 1 | 9 | 322 | 2 | 316 | 1.35e-134 | 385 |
| Msa0517460 | AT1G14550.1 | 55.128 | 312 | 133 | 5 | 12 | 318 | 8 | 317 | 6.57e-119 | 345 |
| Msa0517460 | AT1G14540.1 | 54.019 | 311 | 139 | 3 | 14 | 322 | 7 | 315 | 1.27e-115 | 337 |
| Msa0517460 | AT5G06720.1 | 51.829 | 328 | 146 | 4 | 5 | 322 | 8 | 333 | 3.20e-115 | 337 |
| Msa0517460 | AT5G06730.1 | 50.610 | 328 | 150 | 5 | 5 | 322 | 9 | 334 | 4.95e-112 | 329 |
| Msa0517460 | AT2G18150.1 | 45.994 | 337 | 159 | 4 | 7 | 322 | 2 | 336 | 1.75e-108 | 320 |
| Msa0517460 | AT4G36430.1 | 49.211 | 317 | 151 | 3 | 14 | 322 | 16 | 330 | 4.65e-108 | 318 |
| Msa0517460 | AT2G18140.1 | 47.742 | 310 | 152 | 3 | 21 | 322 | 28 | 335 | 1.54e-104 | 309 |
| Msa0517460 | AT1G44970.1 | 51.780 | 309 | 138 | 3 | 20 | 319 | 37 | 343 | 2.71e-104 | 309 |
| Msa0517460 | AT5G66390.1 | 49.505 | 303 | 143 | 3 | 28 | 322 | 33 | 333 | 4.50e-103 | 306 |
| Msa0517460 | AT3G50990.1 | 49.697 | 330 | 148 | 6 | 9 | 322 | 14 | 341 | 6.90e-102 | 303 |
| Msa0517460 | AT5G19890.1 | 48.923 | 325 | 144 | 7 | 9 | 322 | 14 | 327 | 2.03e-99 | 296 |
| Msa0517460 | AT4G08770.1 | 49.521 | 313 | 145 | 4 | 21 | 322 | 17 | 327 | 2.22e-99 | 296 |
| Msa0517460 | AT4G16270.1 | 49.836 | 305 | 137 | 5 | 28 | 322 | 50 | 348 | 2.42e-99 | 296 |
| Msa0517460 | AT4G08780.1 | 48.387 | 310 | 147 | 4 | 24 | 322 | 20 | 327 | 8.11e-99 | 295 |
| Msa0517460 | AT2G35380.1 | 48.726 | 314 | 150 | 3 | 20 | 322 | 22 | 335 | 1.27e-98 | 294 |
| Msa0517460 | AT5G19880.1 | 46.626 | 326 | 157 | 5 | 9 | 322 | 9 | 329 | 7.15e-97 | 290 |
| Msa0517460 | AT1G49570.1 | 48.197 | 305 | 148 | 3 | 26 | 321 | 46 | 349 | 1.03e-96 | 290 |
| Msa0517460 | AT2G38390.1 | 47.416 | 329 | 161 | 5 | 4 | 322 | 7 | 333 | 1.48e-96 | 290 |
| Msa0517460 | AT2G22420.1 | 44.892 | 323 | 166 | 4 | 7 | 322 | 2 | 319 | 6.87e-96 | 287 |
| Msa0517460 | AT3G32980.1 | 47.531 | 324 | 157 | 4 | 10 | 322 | 13 | 334 | 1.32e-95 | 287 |
| Msa0517460 | AT2G38380.1 | 46.809 | 329 | 163 | 5 | 4 | 322 | 7 | 333 | 2.37e-94 | 284 |
| Msa0517460 | AT1G68850.1 | 43.750 | 304 | 158 | 4 | 28 | 319 | 30 | 332 | 9.94e-94 | 282 |
| Msa0517460 | AT3G49110.1 | 47.003 | 317 | 155 | 4 | 17 | 322 | 22 | 336 | 7.60e-93 | 280 |
| Msa0517460 | AT3G49120.1 | 46.130 | 323 | 161 | 4 | 11 | 322 | 15 | 335 | 4.14e-92 | 278 |
| Msa0517460 | AT3G01190.1 | 41.768 | 328 | 175 | 7 | 4 | 322 | 1 | 321 | 5.60e-84 | 256 |
| Msa0517460 | AT5G15180.1 | 40.867 | 323 | 175 | 7 | 11 | 322 | 12 | 329 | 4.44e-81 | 249 |
| Msa0517460 | AT4G33420.1 | 42.633 | 319 | 172 | 8 | 8 | 322 | 14 | 325 | 8.30e-79 | 243 |
| Msa0517460 | AT1G05260.1 | 41.265 | 332 | 175 | 8 | 4 | 322 | 1 | 325 | 1.54e-78 | 243 |
| Msa0517460 | AT5G42180.1 | 41.796 | 323 | 163 | 7 | 11 | 320 | 5 | 315 | 1.74e-78 | 242 |
| Msa0517460 | AT4G33420.2 | 42.633 | 319 | 172 | 8 | 8 | 322 | 61 | 372 | 3.63e-78 | 243 |
| Msa0517460 | AT5G14130.1 | 39.937 | 318 | 179 | 4 | 9 | 318 | 13 | 326 | 5.29e-78 | 241 |
| Msa0517460 | AT5G14130.2 | 39.937 | 318 | 179 | 4 | 9 | 318 | 54 | 367 | 1.05e-77 | 242 |
| Msa0517460 | AT5G51890.1 | 38.889 | 324 | 185 | 6 | 4 | 319 | 1 | 319 | 1.77e-77 | 240 |
| Msa0517460 | AT1G71695.1 | 42.809 | 299 | 164 | 4 | 28 | 322 | 44 | 339 | 4.14e-77 | 240 |
| Msa0517460 | AT4G11290.1 | 40.615 | 325 | 175 | 7 | 9 | 318 | 1 | 322 | 8.62e-77 | 238 |
| Msa0517460 | AT3G21770.1 | 39.935 | 308 | 172 | 6 | 20 | 318 | 21 | 324 | 2.01e-76 | 237 |
| Msa0517460 | AT5G17820.1 | 40.063 | 317 | 171 | 5 | 13 | 322 | 9 | 313 | 7.00e-76 | 235 |
| Msa0517460 | AT2G41480.1 | 40.557 | 323 | 171 | 9 | 14 | 322 | 13 | 328 | 1.07e-75 | 235 |
| Msa0517460 | AT5G64120.1 | 42.617 | 298 | 156 | 6 | 32 | 322 | 39 | 328 | 4.08e-75 | 234 |
| Msa0517460 | AT3G03670.1 | 40.491 | 326 | 177 | 5 | 8 | 322 | 2 | 321 | 8.12e-75 | 233 |
| Msa0517460 | AT5G17820.2 | 40.063 | 317 | 171 | 5 | 13 | 322 | 62 | 366 | 9.72e-75 | 234 |
| Msa0517460 | AT2G35380.2 | 50.410 | 244 | 110 | 3 | 90 | 322 | 4 | 247 | 7.00e-74 | 228 |
| Msa0517460 | AT1G05240.1 | 38.961 | 308 | 167 | 6 | 28 | 322 | 26 | 325 | 5.76e-73 | 228 |
| Msa0517460 | AT1G05250.1 | 38.961 | 308 | 167 | 6 | 28 | 322 | 26 | 325 | 5.76e-73 | 228 |
| Msa0517460 | AT4G37530.1 | 40.895 | 313 | 163 | 6 | 21 | 318 | 20 | 325 | 1.33e-71 | 225 |
| Msa0517460 | AT1G77100.1 | 42.462 | 325 | 168 | 10 | 11 | 322 | 1 | 319 | 8.08e-71 | 223 |
| Msa0517460 | AT5G47000.1 | 39.365 | 315 | 184 | 4 | 9 | 318 | 14 | 326 | 9.97e-70 | 220 |
| Msa0517460 | AT4G37520.1 | 40.199 | 301 | 172 | 3 | 26 | 318 | 25 | 325 | 1.23e-69 | 220 |
| Msa0517460 | AT4G26010.1 | 40.000 | 305 | 174 | 5 | 16 | 319 | 10 | 306 | 1.84e-69 | 219 |
| Msa0517460 | AT4G26010.2 | 40.000 | 305 | 174 | 5 | 16 | 319 | 38 | 334 | 4.96e-69 | 219 |
| Msa0517460 | AT3G28200.1 | 39.203 | 301 | 174 | 4 | 23 | 318 | 16 | 312 | 7.85e-69 | 218 |
| Msa0517460 | AT2G18980.1 | 39.692 | 325 | 174 | 8 | 12 | 322 | 7 | 323 | 8.94e-69 | 218 |
| Msa0517460 | AT4G17690.1 | 40.264 | 303 | 175 | 4 | 20 | 318 | 18 | 318 | 1.22e-68 | 217 |
| Msa0517460 | AT1G34510.1 | 39.806 | 309 | 175 | 5 | 16 | 322 | 10 | 309 | 2.86e-68 | 216 |
| Msa0517460 | AT5G40150.1 | 39.016 | 305 | 170 | 6 | 23 | 318 | 27 | 324 | 3.61e-68 | 216 |
| Msa0517460 | AT3G49960.1 | 38.554 | 332 | 176 | 7 | 7 | 318 | 2 | 325 | 5.25e-68 | 216 |
| Msa0517460 | AT4G37520.2 | 39.867 | 301 | 170 | 4 | 26 | 318 | 25 | 322 | 1.39e-67 | 214 |
| Msa0517460 | AT5G67400.1 | 38.720 | 328 | 181 | 7 | 7 | 318 | 2 | 325 | 1.46e-67 | 214 |
| Msa0517460 | AT4G30170.1 | 39.482 | 309 | 169 | 6 | 25 | 322 | 24 | 325 | 1.69e-67 | 214 |
| Msa0517460 | AT4G25980.1 | 37.812 | 320 | 179 | 7 | 12 | 318 | 10 | 322 | 2.56e-67 | 214 |
| Msa0517460 | AT4G33870.1 | 34.524 | 336 | 177 | 4 | 26 | 320 | 66 | 399 | 4.17e-67 | 216 |
| Msa0517460 | AT1G30870.1 | 39.016 | 305 | 166 | 6 | 28 | 322 | 51 | 345 | 2.51e-66 | 212 |
| Msa0517460 | AT1G24110.1 | 36.957 | 322 | 189 | 6 | 12 | 322 | 4 | 322 | 4.60e-66 | 211 |
| Msa0517460 | AT2G24800.1 | 38.889 | 306 | 173 | 3 | 26 | 322 | 29 | 329 | 1.55e-65 | 209 |
| Msa0517460 | AT4G31760.1 | 36.280 | 328 | 192 | 4 | 4 | 322 | 7 | 326 | 2.29e-65 | 209 |
| Msa0517460 | AT4G21960.1 | 37.748 | 302 | 182 | 4 | 21 | 318 | 24 | 323 | 3.95e-65 | 208 |
| Msa0517460 | AT5G39580.1 | 39.375 | 320 | 178 | 8 | 12 | 322 | 7 | 319 | 4.07e-65 | 208 |
| Msa0517460 | AT2G34060.1 | 40.717 | 307 | 168 | 7 | 25 | 319 | 39 | 343 | 1.78e-64 | 207 |
| Msa0517460 | AT2G39040.1 | 38.978 | 313 | 177 | 7 | 22 | 322 | 40 | 350 | 2.56e-63 | 204 |
| Msa0517460 | AT4G37530.2 | 41.729 | 266 | 133 | 6 | 21 | 271 | 20 | 278 | 5.42e-61 | 196 |
| Msa0517460 | AT5G64100.1 | 36.667 | 330 | 177 | 7 | 11 | 318 | 8 | 327 | 1.20e-60 | 197 |
| Msa0517460 | AT5G64110.1 | 38.154 | 325 | 174 | 8 | 12 | 318 | 11 | 326 | 7.97e-60 | 195 |
| Msa0517460 | AT3G17070.1 | 36.420 | 324 | 186 | 8 | 14 | 320 | 17 | 337 | 1.22e-59 | 194 |
| Msa0517460 | AT2G37130.1 | 34.304 | 309 | 194 | 5 | 20 | 322 | 22 | 327 | 9.85e-59 | 192 |
| Msa0517460 | AT2G37130.2 | 34.564 | 298 | 186 | 5 | 31 | 322 | 2 | 296 | 2.48e-57 | 187 |
| Msa0517460 | AT2G43480.1 | 33.537 | 328 | 196 | 7 | 9 | 322 | 16 | 335 | 1.10e-56 | 187 |
| Msa0517460 | AT5G22410.1 | 36.503 | 326 | 185 | 11 | 7 | 319 | 6 | 322 | 3.70e-56 | 185 |
| Msa0517460 | AT5G24070.1 | 34.405 | 311 | 182 | 7 | 26 | 322 | 33 | 335 | 9.17e-55 | 182 |
| Msa0517460 | AT3G17070.2 | 35.249 | 261 | 155 | 7 | 70 | 320 | 18 | 274 | 4.90e-44 | 152 |
| Msa0517460 | AT4G25980.2 | 42.623 | 183 | 101 | 3 | 13 | 195 | 56 | 234 | 1.15e-43 | 151 |
| Msa0517460 | AT5G39580.2 | 37.662 | 231 | 133 | 5 | 12 | 240 | 7 | 228 | 1.26e-41 | 145 |
| Msa0517460 | AT2G24800.2 | 42.262 | 168 | 93 | 1 | 26 | 193 | 29 | 192 | 3.49e-37 | 133 |
| Msa0517460 | AT4G32320.1 | 29.856 | 278 | 126 | 8 | 39 | 301 | 96 | 319 | 8.23e-25 | 102 |
| Msa0517460 | AT3G42570.1 | 36.082 | 97 | 61 | 1 | 100 | 195 | 53 | 149 | 6.45e-16 | 74.3 |
Find 91 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCTATTTCTCCTCATAAT+AGG | 0.184669 | 3_4:-69087496 | Msa0517460:CDS |
| ATCCGAAATATATCGGTTTC+TGG | 0.221092 | 3_4:-69083102 | Msa0517460:three_prime_UTR |
| TCCCCTGATCCTGATGTCTT+TGG | 0.225606 | 3_4:+69083658 | None:intergenic |
| AAGCAAGGTGCACAACATTT+AGG | 0.229716 | 3_4:-69083744 | Msa0517460:CDS |
| GTTAATCTAGAACAACTTAA+AGG | 0.237686 | 3_4:+69087532 | None:intergenic |
| AGTGAAACTTATTTGTTTAG+AGG | 0.259691 | 3_4:-69087570 | Msa0517460:five_prime_UTR |
| TTGGACAATGGAAGAGAGTT+TGG | 0.300332 | 3_4:+69087426 | None:intergenic |
| TTCCAGAAACCGATATATTT+CGG | 0.302930 | 3_4:+69083100 | None:intergenic |
| TTCTATTTCTCCTCATAATA+GGG | 0.333578 | 3_4:-69087495 | Msa0517460:CDS |
| CCCCTGATCCTGATGTCTTT+GGG | 0.334218 | 3_4:+69083659 | None:intergenic |
| AGGATCAGGGGACAATAATT+TGG | 0.345432 | 3_4:-69083647 | Msa0517460:CDS |
| ACATTGAGGTGAGTACATTA+AGG | 0.355998 | 3_4:+69084444 | None:intergenic |
| TGTCAAAAGAAGTGGGAGTA+TGG | 0.358882 | 3_4:+69083611 | None:intergenic |
| TTCAAACTTAAATATTAGTT+AGG | 0.366105 | 3_4:+69083379 | None:intergenic |
| TAGATTAACAATGTTCAGTT+TGG | 0.377384 | 3_4:-69087518 | Msa0517460:CDS |
| CCTCGAACAGAGTTCCTATT+CGG | 0.377487 | 3_4:+69084796 | None:intergenic |
| AGCAAGGTGCACAACATTTA+GGG | 0.388383 | 3_4:-69083743 | Msa0517460:CDS |
| TGACTAGGTGCTCACACAAT+TGG | 0.411685 | 3_4:-69083769 | Msa0517460:intron |
| TGTTTAGAGGATTTAATCAA+TGG | 0.420902 | 3_4:-69087557 | Msa0517460:exon |
| ACAACTAATCCGAAATATAT+CGG | 0.428420 | 3_4:-69083109 | Msa0517460:three_prime_UTR |
| TACTTTACATGATAGCTTGG+TGG | 0.438119 | 3_4:-69084557 | Msa0517460:intron |
| CTCGAACAGAGTTCCTATTC+GGG | 0.444608 | 3_4:+69084797 | None:intergenic |
| AAACCACTCACTGGATCAAA+TGG | 0.448742 | 3_4:-69083427 | Msa0517460:CDS |
| TGGACAATGGAAGAGAGTTT+GGG | 0.453796 | 3_4:+69087427 | None:intergenic |
| TGCCCAAAGACATCAGGATC+AGG | 0.457132 | 3_4:-69083661 | Msa0517460:CDS |
| AGAAGAACGCACTCCCGAAT+AGG | 0.461469 | 3_4:-69084810 | Msa0517460:CDS |
| AAGGACTTAGTCGCATTGTC+AGG | 0.466819 | 3_4:-69084398 | Msa0517460:intron |
| TTGATATAGCGGATTGCACT+TGG | 0.468796 | 3_4:+69087401 | None:intergenic |
| ACCTCAATGTTTAAGAATGT+TGG | 0.473954 | 3_4:-69084431 | Msa0517460:CDS |
| TAGCGGATTGCACTTGGCGT+TGG | 0.477054 | 3_4:+69087407 | None:intergenic |
| AATTTGATGTGTCATCTAGT+AGG | 0.477448 | 3_4:+69084842 | None:intergenic |
| TCAGCACATGATACAACTCC+TGG | 0.479117 | 3_4:+69084727 | None:intergenic |
| TTTAATTATGCGTGTTTCCG+AGG | 0.483168 | 3_4:-69083255 | Msa0517460:three_prime_UTR |
| ACCCGCCGTTGAAAAGTTGT+TGG | 0.489526 | 3_4:+69083539 | None:intergenic |
| GATAGCTTGGTGGCCCAACC+TGG | 0.492782 | 3_4:-69084547 | Msa0517460:intron |
| TTAAGGTTGGAAGTTGGTGC+TGG | 0.495278 | 3_4:+69084461 | None:intergenic |
| CATTGGCACTCCCTATTATG+AGG | 0.497408 | 3_4:+69087485 | None:intergenic |
| AGCAATCGTGGAAGAACAAT+CGG | 0.497821 | 3_4:+69087350 | None:intergenic |
| TCTAAATGCCCAAAGACATC+AGG | 0.498118 | 3_4:-69083667 | Msa0517460:CDS |
| TTGCAATTATAGGGGTGCGA+TGG | 0.506694 | 3_4:-69084871 | Msa0517460:intron |
| CCAACCTGGAATGTAAAACT+TGG | 0.513397 | 3_4:-69084533 | Msa0517460:CDS |
| GCCACTCACTATTGAGTTGG+TGG | 0.515724 | 3_4:+69083516 | None:intergenic |
| TACCACTGCTATGATCAAGA+TGG | 0.515839 | 3_4:-69083458 | Msa0517460:CDS |
| TGCAATTATAGGGGTGCGAT+GGG | 0.518318 | 3_4:-69084870 | Msa0517460:intron |
| ACCACTGCTATGATCAAGAT+GGG | 0.522530 | 3_4:-69083457 | Msa0517460:CDS |
| TATATCAAAGGAGGCACGAA+TGG | 0.526328 | 3_4:-69087386 | Msa0517460:CDS |
| TGAGGTGAGTACATTAAGGT+TGG | 0.527335 | 3_4:+69084448 | None:intergenic |
| ACCAACATTCTTAAACATTG+AGG | 0.529518 | 3_4:+69084430 | None:intergenic |
| CAGGAACCTTGTTCAAAACA+AGG | 0.532745 | 3_4:-69083578 | Msa0517460:CDS |
| GTTTGTAGAGAGTTGTGCAT+TGG | 0.533430 | 3_4:+69087468 | None:intergenic |
| TTGCACTTGGCGTTGGACAA+TGG | 0.534086 | 3_4:+69087414 | None:intergenic |
| AACAGAGTCTGTGGCAGCAA+TGG | 0.535017 | 3_4:+69084696 | None:intergenic |
| CCGAATAGGAACTCTGTTCG+AGG | 0.537065 | 3_4:-69084796 | Msa0517460:CDS |
| TCTCAATCTTGTATCAAACA+TGG | 0.541958 | 3_4:+69083133 | None:intergenic |
| ATATCAAAGGAGGCACGAAT+GGG | 0.545501 | 3_4:-69087385 | Msa0517460:CDS |
| TGACAATGCGACTAAGTCCT+TGG | 0.546126 | 3_4:+69084400 | None:intergenic |
| TCGTGCCTCCTTTGATATAG+CGG | 0.546698 | 3_4:+69087390 | None:intergenic |
| GTTGGAAGTTGGTGCTGGGA+TGG | 0.546874 | 3_4:+69084466 | None:intergenic |
| TTCTTTGTTCTTGAGAAGAG+AGG | 0.555331 | 3_4:+69087612 | None:intergenic |
| CTAAGACAATACACAACCCT+CGG | 0.557306 | 3_4:+69083238 | None:intergenic |
| GCCGTAGAGAACATATGTCC+AGG | 0.557511 | 3_4:-69084745 | Msa0517460:CDS |
| GCCCAAAGACATCAGGATCA+GGG | 0.561189 | 3_4:-69083660 | Msa0517460:CDS |
| AGTACATTAAGGTTGGAAGT+TGG | 0.561812 | 3_4:+69084455 | None:intergenic |
| CTCAATCTTGTATCAAACAT+GGG | 0.563902 | 3_4:+69083134 | None:intergenic |
| TTAATTATGCGTGTTTCCGA+GGG | 0.563936 | 3_4:-69083254 | Msa0517460:three_prime_UTR |
| GGAGATATTAAACCACTCAC+TGG | 0.564942 | 3_4:-69083436 | Msa0517460:CDS |
| TCCTGGACATATGTTCTCTA+CGG | 0.565428 | 3_4:+69084744 | None:intergenic |
| CAATGCGACTAAGTCCTTGG+TGG | 0.565757 | 3_4:+69084403 | None:intergenic |
| TCTCCATTTGATCCAGTGAG+TGG | 0.575082 | 3_4:+69083424 | None:intergenic |
| ATAGCCACTCACTATTGAGT+TGG | 0.580124 | 3_4:+69083513 | None:intergenic |
| GTAGCAGTTGTCAAAAGAAG+TGG | 0.583356 | 3_4:+69083603 | None:intergenic |
| AGTCTGTGGCAGCAATGGCT+AGG | 0.583680 | 3_4:+69084701 | None:intergenic |
| TGTTCTTGAGAAGAGAGGTG+TGG | 0.588231 | 3_4:+69087617 | None:intergenic |
| GTGGGAGTATGGAGATCAAG+AGG | 0.589966 | 3_4:+69083622 | None:intergenic |
| ATTCATGAGAATACATGAGT+GGG | 0.602132 | 3_4:-69083168 | Msa0517460:three_prime_UTR |
| AGTGCAATCCGCTATATCAA+AGG | 0.607186 | 3_4:-69087398 | Msa0517460:CDS |
| ATTGTATTATATAGATGTGT+GGG | 0.607415 | 3_4:-69083322 | Msa0517460:three_prime_UTR |
| TAGCAGTTGTCAAAAGAAGT+GGG | 0.609622 | 3_4:+69083604 | None:intergenic |
| CTCACACAATTGGACAAGCA+AGG | 0.617199 | 3_4:-69083759 | Msa0517460:CDS |
| TACAATTGCAACAGAGTCTG+TGG | 0.617557 | 3_4:+69084687 | None:intergenic |
| AATTGTATTATATAGATGTG+TGG | 0.617613 | 3_4:-69083323 | Msa0517460:three_prime_UTR |
| GAATGTTGGTCTTTCCACCA+AGG | 0.624861 | 3_4:-69084417 | Msa0517460:CDS |
| AGCAGATTGACTAGCAGTCG+TGG | 0.628218 | 3_4:+69084499 | None:intergenic |
| TCCCATCTTGATCATAGCAG+TGG | 0.628636 | 3_4:+69083456 | None:intergenic |
| TAAGGTTGGAAGTTGGTGCT+GGG | 0.629361 | 3_4:+69084462 | None:intergenic |
| CCCAAAGACATCAGGATCAG+GGG | 0.634254 | 3_4:-69083659 | Msa0517460:CDS |
| GCAATCCGCTATATCAAAGG+AGG | 0.647372 | 3_4:-69087395 | Msa0517460:CDS |
| CATTCATGAGAATACATGAG+TGG | 0.654824 | 3_4:-69083169 | Msa0517460:three_prime_UTR |
| AGGAACCTTGTTCAAAACAA+GGG | 0.662588 | 3_4:-69083577 | Msa0517460:CDS |
| TTACATTGACAAAGCAATCG+TGG | 0.667907 | 3_4:+69087338 | None:intergenic |
| TCCACCAACTCAATAGTGAG+TGG | 0.672331 | 3_4:-69083517 | Msa0517460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTTAATTTTTTTTT+TGG | - | chr3_4:69084883-69084902 | Msa0517460:intron | 0.0% |
| !!! | TAGTTCATTTAATAAATTTT+AGG | + | chr3_4:69083600-69083619 | None:intergenic | 10.0% |
| !! | GTTGAAATAATAAAAAATAT+AGG | - | chr3_4:69083627-69083646 | Msa0517460:CDS | 10.0% |
| !! | TACTTAAATATAATTTAAAC+CGG | - | chr3_4:69083910-69083929 | Msa0517460:intron | 10.0% |
| !! | AAAAATTAAAATTAACATGT+CGG | - | chr3_4:69083966-69083985 | Msa0517460:intron | 10.0% |
| !! | AATAAAAATATTGAGAATAA+TGG | - | chr3_4:69085638-69085657 | Msa0517460:intron | 10.0% |
| !! | TATAACATAAAAGATTAAAT+CGG | + | chr3_4:69086540-69086559 | None:intergenic | 10.0% |
| !!! | AATTGCTTTGAAAAAATATA+TGG | + | chr3_4:69083436-69083455 | None:intergenic | 15.0% |
| !! | AACAATTATGAAAATTAACA+TGG | - | chr3_4:69084841-69084860 | Msa0517460:CDS | 15.0% |
| !! | TTCTTTCAAAAAAAATTAAG+TGG | + | chr3_4:69085043-69085062 | None:intergenic | 15.0% |
| !! | TTCTTTCAAAAAAAATTAAG+TGG | + | chr3_4:69085043-69085062 | None:intergenic | 15.0% |
| !! | ATCATACATAAAATATTTAG+TGG | - | chr3_4:69085536-69085555 | Msa0517460:intron | 15.0% |
| !! | ATTAATCAATTTACATTTCA+TGG | + | chr3_4:69086115-69086134 | None:intergenic | 15.0% |
| !!! | GATTTTTTTTAGTGAAATTT+GGG | - | chr3_4:69086589-69086608 | Msa0517460:intron | 15.0% |
| !! | ATATTAATATGATGAACATT+TGG | - | chr3_4:69086617-69086636 | Msa0517460:intron | 15.0% |
| !! | TCGATAAAAAATAAGATAAA+TGG | - | chr3_4:69086809-69086828 | Msa0517460:intron | 15.0% |
| !! | TAATTGTCAAATAACTAATT+TGG | - | chr3_4:69086909-69086928 | Msa0517460:intron | 15.0% |
| !! | TTCAAACTTAAATATTAGTT+AGG | + | chr3_4:69087338-69087357 | None:intergenic | 15.0% |
| !!! | TTAGTTTTATTATGATCTTT+TGG | - | chr3_4:69087495-69087514 | Msa0517460:CDS | 15.0% |
| !!! | TAGTTTTATTATGATCTTTT+GGG | - | chr3_4:69087496-69087515 | Msa0517460:CDS | 15.0% |
| !! | TTGATACTAGTATATTTGTT+CGG | - | chr3_4:69083462-69083481 | Msa0517460:CDS | 20.0% |
| !! | GTAATATTATATACATAACC+CGG | + | chr3_4:69083494-69083513 | None:intergenic | 20.0% |
| !!! | TTTTTATCTTCATTAAACTC+CGG | + | chr3_4:69083932-69083951 | None:intergenic | 20.0% |
| !!! | TACTAGCTATTTTTTTTGAA+AGG | + | chr3_4:69084299-69084318 | None:intergenic | 20.0% |
| !! | TAGTAATAGTAAGAGTTATT+AGG | - | chr3_4:69084314-69084333 | Msa0517460:intron | 20.0% |
| !! | AGTAATAGTAAGAGTTATTA+GGG | - | chr3_4:69084315-69084334 | Msa0517460:intron | 20.0% |
| !! | AAAAAAAAACTTAATACCCA+TGG | + | chr3_4:69084381-69084400 | None:intergenic | 20.0% |
| !!! | CATAAAAAAAAAGTGTTAGT+AGG | - | chr3_4:69084576-69084595 | Msa0517460:intron | 20.0% |
| !! | TTATCTTGAACATCTTAATT+AGG | + | chr3_4:69084685-69084704 | None:intergenic | 20.0% |
| !! | ACATTTCAAGATATTAACTT+CGG | + | chr3_4:69084748-69084767 | None:intergenic | 20.0% |
| !! | ATGTATATGTGACTTAAAAT+TGG | - | chr3_4:69084764-69084783 | Msa0517460:CDS | 20.0% |
| !! | AACGTTAAATGAATATATAG+CGG | - | chr3_4:69085223-69085242 | Msa0517460:intron | 20.0% |
| !!! | TTACTACTATTGATTTAAAG+CGG | - | chr3_4:69085701-69085720 | Msa0517460:intron | 20.0% |
| !! | ATATACTTACTTGCAATTAT+AGG | - | chr3_4:69085833-69085852 | Msa0517460:intron | 20.0% |
| !! | TATACTTACTTGCAATTATA+GGG | - | chr3_4:69085834-69085853 | Msa0517460:intron | 20.0% |
| !!! | TATTGTTTGAAGTTAAGTTA+AGG | + | chr3_4:69086433-69086452 | None:intergenic | 20.0% |
| !! | TATAACATAAAGGATGAAAT+CGG | + | chr3_4:69086480-69086499 | None:intergenic | 20.0% |
| !! | GTTACATGATTATAACATAA+AGG | + | chr3_4:69086490-69086509 | None:intergenic | 20.0% |
| !!! | AAACAATGTTATCCTTTTTA+TGG | - | chr3_4:69086566-69086585 | Msa0517460:intron | 20.0% |
| !!! | AACAATGTTATCCTTTTTAT+GGG | - | chr3_4:69086567-69086586 | Msa0517460:intron | 20.0% |
| !! | CTAAAAAAAATCCCATAAAA+AGG | + | chr3_4:69086581-69086600 | None:intergenic | 20.0% |
| !!! | GGATTTTTTTTAGTGAAATT+TGG | - | chr3_4:69086588-69086607 | Msa0517460:intron | 20.0% |
| !! | TCGAAAAAAGAAAAAGATAA+AGG | - | chr3_4:69086749-69086768 | Msa0517460:intron | 20.0% |
| !! | GTTACATGAAATTAAGTTAA+TGG | - | chr3_4:69086839-69086858 | Msa0517460:intron | 20.0% |
| !!! | AATTTTGTATGTGTATATCT+TGG | + | chr3_4:69087375-69087394 | None:intergenic | 20.0% |
| !! | AATTGTATTATATAGATGTG+TGG | - | chr3_4:69087391-69087410 | Msa0517460:CDS | 20.0% |
| !! | ATTGTATTATATAGATGTGT+GGG | - | chr3_4:69087392-69087411 | Msa0517460:CDS | 20.0% |
| !!! | AGTTTTATTATGATCTTTTG+GGG | - | chr3_4:69087497-69087516 | Msa0517460:CDS | 20.0% |
| ! | AGTGAAACTTATTTGTTTAG+AGG | - | chr3_4:69083144-69083163 | Msa0517460:three_prime_UTR | 25.0% |
| ! | TGTTTAGAGGATTTAATCAA+TGG | - | chr3_4:69083157-69083176 | Msa0517460:three_prime_UTR | 25.0% |
| !! | GTTAATCTAGAACAACTTAA+AGG | + | chr3_4:69083185-69083204 | None:intergenic | 25.0% |
| ! | TAGATTAACAATGTTCAGTT+TGG | - | chr3_4:69083196-69083215 | Msa0517460:three_prime_UTR | 25.0% |
| !! | TTCTATTTCTCCTCATAATA+GGG | - | chr3_4:69083219-69083238 | Msa0517460:three_prime_UTR | 25.0% |
| ! | AGTTCAAAGAAGATTTACAA+AGG | - | chr3_4:69083743-69083762 | Msa0517460:CDS | 25.0% |
| ! | TGTGATAACATCTTTGATAT+GGG | + | chr3_4:69083782-69083801 | None:intergenic | 25.0% |
| ! | ATGTGATAACATCTTTGATA+TGG | + | chr3_4:69083783-69083802 | None:intergenic | 25.0% |
| ! | TAATAGACAATTGTCAATGA+TGG | + | chr3_4:69083870-69083889 | None:intergenic | 25.0% |
| !! | AAAAAAAAGCATGATATGCA+AGG | - | chr3_4:69084345-69084364 | Msa0517460:intron | 25.0% |
| ! | TCAAACCCTATTAAAACATT+TGG | - | chr3_4:69084720-69084739 | Msa0517460:CDS | 25.0% |
| !! | AGAAATGCTACTTAATGAAA+TGG | - | chr3_4:69085059-69085078 | Msa0517460:intron | 25.0% |
| !! | AGAAATGCTACTTAATGAAA+TGG | - | chr3_4:69085059-69085078 | Msa0517460:intron | 25.0% |
| ! | AAGAATTTCATCTCGTATTT+AGG | + | chr3_4:69085770-69085789 | None:intergenic | 25.0% |
| ! | ATACTTACTTGCAATTATAG+GGG | - | chr3_4:69085835-69085854 | Msa0517460:intron | 25.0% |
| !! | TTTTACTTTACATGATAGCT+TGG | - | chr3_4:69086154-69086173 | Msa0517460:intron | 25.0% |
| ! | ATAACATAAAGGATGAAATC+GGG | + | chr3_4:69086479-69086498 | None:intergenic | 25.0% |
| ! | ACAACTAATCCGAAATATAT+CGG | - | chr3_4:69087605-69087624 | Msa0517460:five_prime_UTR | 25.0% |
| ! | GTTCTATTTCTCCTCATAAT+AGG | - | chr3_4:69083218-69083237 | Msa0517460:three_prime_UTR | 30.0% |
| ACATAACATTGTTGCATTCA+TGG | + | chr3_4:69084170-69084189 | None:intergenic | 30.0% | |
| TAGAAATTAATCTCTCGAAC+CGG | + | chr3_4:69084230-69084249 | None:intergenic | 30.0% | |
| AAAAACTTAATACCCATGGT+GGG | + | chr3_4:69084377-69084396 | None:intergenic | 30.0% | |
| AAAAAACTTAATACCCATGG+TGG | + | chr3_4:69084378-69084397 | None:intergenic | 30.0% | |
| ! | TTATCCCTATGATGATTTGT+GGG | + | chr3_4:69084406-69084425 | None:intergenic | 30.0% |
| TTTATCCCTATGATGATTTG+TGG | + | chr3_4:69084407-69084426 | None:intergenic | 30.0% | |
| AAATCATCATAGGGATAAAG+TGG | - | chr3_4:69084408-69084427 | Msa0517460:CDS | 30.0% | |
| ATTGAGAATAATGGTGAAAG+TGG | - | chr3_4:69085647-69085666 | Msa0517460:intron | 30.0% | |
| GTAGTAACACATACAAAGTA+AGG | + | chr3_4:69085688-69085707 | None:intergenic | 30.0% | |
| TCAAATCTTCTTGAAGACAA+TGG | + | chr3_4:69085737-69085756 | None:intergenic | 30.0% | |
| AATTTCATCTCGTATTTAGG+TGG | + | chr3_4:69085767-69085786 | None:intergenic | 30.0% | |
| GTTTAATCATTATGCTTCCT+AGG | + | chr3_4:69085809-69085828 | None:intergenic | 30.0% | |
| AATTTGATGTGTCATCTAGT+AGG | + | chr3_4:69085875-69085894 | None:intergenic | 30.0% | |
| ! | GATGACACATCAAATTTTAC+TGG | - | chr3_4:69085879-69085898 | Msa0517460:intron | 30.0% |
| ACCTCAATGTTTAAGAATGT+TGG | - | chr3_4:69086283-69086302 | Msa0517460:intron | 30.0% | |
| ACCAACATTCTTAAACATTG+AGG | + | chr3_4:69086287-69086306 | None:intergenic | 30.0% | |
| TCGGAAAAAGAAAACGATAA+AGG | + | chr3_4:69086521-69086540 | None:intergenic | 30.0% | |
| CTTCTCAATTGAGAAATTAC+AGG | + | chr3_4:69086883-69086902 | None:intergenic | 30.0% | |
| GGTGTCTTAATTAATTGACT+AGG | - | chr3_4:69086930-69086949 | Msa0517460:intron | 30.0% | |
| ATTCATGAGAATACATGAGT+GGG | - | chr3_4:69087546-69087565 | Msa0517460:exon | 30.0% | |
| CTCAATCTTGTATCAAACAT+GGG | + | chr3_4:69087583-69087602 | None:intergenic | 30.0% | |
| TCTCAATCTTGTATCAAACA+TGG | + | chr3_4:69087584-69087603 | None:intergenic | 30.0% | |
| TTCCAGAAACCGATATATTT+CGG | + | chr3_4:69087617-69087636 | None:intergenic | 30.0% | |
| TTCTTTGTTCTTGAGAAGAG+AGG | + | chr3_4:69083105-69083124 | None:intergenic | 35.0% | |
| TTACATTGACAAAGCAATCG+TGG | + | chr3_4:69083379-69083398 | None:intergenic | 35.0% | |
| GAAATTAGTGACACATGTGA+AGG | + | chr3_4:69083403-69083422 | None:intergenic | 35.0% | |
| !! | TATATTTGTTCGGTGTTGTC+CGG | - | chr3_4:69083472-69083491 | Msa0517460:CDS | 35.0% |
| AAAACGTTGAAGTGAACTCT+GGG | - | chr3_4:69083694-69083713 | Msa0517460:CDS | 35.0% | |
| GATAACATCTTTGATATGGG+TGG | + | chr3_4:69083779-69083798 | None:intergenic | 35.0% | |
| GAGAACTTTGCCAAACATTA+TGG | - | chr3_4:69084198-69084217 | Msa0517460:intron | 35.0% | |
| AGAAATTAATCTCTCGAACC+GGG | + | chr3_4:69084229-69084248 | None:intergenic | 35.0% | |
| GAGAGATTAATTTCTACCGT+CGG | - | chr3_4:69084234-69084253 | Msa0517460:intron | 35.0% | |
| ! | TTTTCCCCACAAATCATCAT+AGG | - | chr3_4:69084398-69084417 | Msa0517460:intron | 35.0% |
| TTTCCCCACAAATCATCATA+GGG | - | chr3_4:69084399-69084418 | Msa0517460:CDS | 35.0% | |
| ! | TATCCCTATGATGATTTGTG+GGG | + | chr3_4:69084405-69084424 | None:intergenic | 35.0% |
| !!! | CGGAGCCAAATGTTTTAATA+GGG | + | chr3_4:69084728-69084747 | None:intergenic | 35.0% |
| !!! | TCGGAGCCAAATGTTTTAAT+AGG | + | chr3_4:69084729-69084748 | None:intergenic | 35.0% |
| !! | TGTTACTTTAGTTGATGCCT+AGG | - | chr3_4:69085789-69085808 | Msa0517460:intron | 35.0% |
| !! | TGTGTGAGCTAGATTTTGAT+CGG | + | chr3_4:69086088-69086107 | None:intergenic | 35.0% |
| TACTTTACATGATAGCTTGG+TGG | - | chr3_4:69086157-69086176 | Msa0517460:intron | 35.0% | |
| ! | CAAGTTTTACATTCCAGGTT+GGG | + | chr3_4:69086183-69086202 | None:intergenic | 35.0% |
| ! | TCTTCCAAGTTTTACATTCC+AGG | + | chr3_4:69086188-69086207 | None:intergenic | 35.0% |
| AGTACATTAAGGTTGGAAGT+TGG | + | chr3_4:69086262-69086281 | None:intergenic | 35.0% | |
| ACATTGAGGTGAGTACATTA+AGG | + | chr3_4:69086273-69086292 | None:intergenic | 35.0% | |
| !! | TAAAGGAAGAAAGCGTTATC+TGG | - | chr3_4:69086766-69086785 | Msa0517460:intron | 35.0% |
| ACAGGCAAAATTACACAACT+CGG | + | chr3_4:69086865-69086884 | None:intergenic | 35.0% | |
| !!! | ATACTTGTTTTGCTAGCACA+AGG | - | chr3_4:69087021-69087040 | Msa0517460:intron | 35.0% |
| TAGCAGTTGTCAAAAGAAGT+GGG | + | chr3_4:69087113-69087132 | None:intergenic | 35.0% | |
| AGGAACCTTGTTCAAAACAA+GGG | - | chr3_4:69087137-69087156 | Msa0517460:intron | 35.0% | |
| ! | TCAGACCAACAACTTTTCAA+CGG | - | chr3_4:69087170-69087189 | Msa0517460:intron | 35.0% |
| TTTAATTATGCGTGTTTCCG+AGG | - | chr3_4:69087459-69087478 | Msa0517460:CDS | 35.0% | |
| TTAATTATGCGTGTTTCCGA+GGG | - | chr3_4:69087460-69087479 | Msa0517460:CDS | 35.0% | |
| !! | TTTTGGGGATGTTTGTCTAA+AGG | - | chr3_4:69087512-69087531 | Msa0517460:CDS | 35.0% |
| CATTCATGAGAATACATGAG+TGG | - | chr3_4:69087545-69087564 | Msa0517460:exon | 35.0% | |
| !! | ATCCGAAATATATCGGTTTC+TGG | - | chr3_4:69087612-69087631 | Msa0517460:five_prime_UTR | 35.0% |
| GTTTGTAGAGAGTTGTGCAT+TGG | + | chr3_4:69083249-69083268 | None:intergenic | 40.0% | |
| TGGACAATGGAAGAGAGTTT+GGG | + | chr3_4:69083290-69083309 | None:intergenic | 40.0% | |
| TTGGACAATGGAAGAGAGTT+TGG | + | chr3_4:69083291-69083310 | None:intergenic | 40.0% | |
| !! | TTGATATAGCGGATTGCACT+TGG | + | chr3_4:69083316-69083335 | None:intergenic | 40.0% |
| AGTGCAATCCGCTATATCAA+AGG | - | chr3_4:69083316-69083335 | Msa0517460:three_prime_UTR | 40.0% | |
| ! | TATATCAAAGGAGGCACGAA+TGG | - | chr3_4:69083328-69083347 | Msa0517460:three_prime_UTR | 40.0% |
| ! | ATATCAAAGGAGGCACGAAT+GGG | - | chr3_4:69083329-69083348 | Msa0517460:three_prime_UTR | 40.0% |
| AGCAATCGTGGAAGAACAAT+CGG | + | chr3_4:69083367-69083386 | None:intergenic | 40.0% | |
| !! | ATATTTGTTCGGTGTTGTCC+GGG | - | chr3_4:69083473-69083492 | Msa0517460:CDS | 40.0% |
| CAAAACGTTGAAGTGAACTC+TGG | - | chr3_4:69083693-69083712 | Msa0517460:CDS | 40.0% | |
| TGTTATCACATCGACGACAA+CGG | - | chr3_4:69083792-69083811 | Msa0517460:intron | 40.0% | |
| !! | ACTTGTCACTCAAAAGCACT+AGG | - | chr3_4:69084080-69084099 | Msa0517460:intron | 40.0% |
| !! | ACTCAAAAGCACTAGGATGA+TGG | - | chr3_4:69084087-69084106 | Msa0517460:intron | 40.0% |
| TCAAGCTTAACCAGAAGTGA+TGG | - | chr3_4:69084122-69084141 | Msa0517460:intron | 40.0% | |
| CAAGCTTAACCAGAAGTGAT+GGG | - | chr3_4:69084123-69084142 | Msa0517460:intron | 40.0% | |
| !! | AACCAGAAGTGATGGGTTAT+TGG | - | chr3_4:69084130-69084149 | Msa0517460:intron | 40.0% |
| ATCCAATAACCCATCACTTC+TGG | + | chr3_4:69084135-69084154 | None:intergenic | 40.0% | |
| CATTGTTGCATTCATGGAGT+TGG | + | chr3_4:69084164-69084183 | None:intergenic | 40.0% | |
| TCCTGGACATATGTTCTCTA+CGG | + | chr3_4:69085973-69085992 | None:intergenic | 40.0% | |
| TACAATTGCAACAGAGTCTG+TGG | + | chr3_4:69086030-69086049 | None:intergenic | 40.0% | |
| ! | CCAAGTTTTACATTCCAGGT+TGG | + | chr3_4:69086184-69086203 | None:intergenic | 40.0% |
| CCAACCTGGAATGTAAAACT+TGG | - | chr3_4:69086181-69086200 | Msa0517460:intron | 40.0% | |
| TGAGGTGAGTACATTAAGGT+TGG | + | chr3_4:69086269-69086288 | None:intergenic | 40.0% | |
| AAGCAAGGTGCACAACATTT+AGG | - | chr3_4:69086970-69086989 | Msa0517460:intron | 40.0% | |
| AGCAAGGTGCACAACATTTA+GGG | - | chr3_4:69086971-69086990 | Msa0517460:intron | 40.0% | |
| TCTAAATGCCCAAAGACATC+AGG | - | chr3_4:69087047-69087066 | Msa0517460:intron | 40.0% | |
| AGGATCAGGGGACAATAATT+TGG | - | chr3_4:69087067-69087086 | Msa0517460:intron | 40.0% | |
| TGTCAAAAGAAGTGGGAGTA+TGG | + | chr3_4:69087106-69087125 | None:intergenic | 40.0% | |
| GTAGCAGTTGTCAAAAGAAG+TGG | + | chr3_4:69087114-69087133 | None:intergenic | 40.0% | |
| ! | CTTTTGACAACTGCTACTAC+AGG | - | chr3_4:69087117-69087136 | Msa0517460:intron | 40.0% |
| CAGGAACCTTGTTCAAAACA+AGG | - | chr3_4:69087136-69087155 | Msa0517460:intron | 40.0% | |
| !!! | GAAGACCCTTGTTTTGAACA+AGG | + | chr3_4:69087145-69087164 | None:intergenic | 40.0% |
| ATAGCCACTCACTATTGAGT+TGG | + | chr3_4:69087204-69087223 | None:intergenic | 40.0% | |
| TACCACTGCTATGATCAAGA+TGG | - | chr3_4:69087256-69087275 | Msa0517460:intron | 40.0% | |
| ACCACTGCTATGATCAAGAT+GGG | - | chr3_4:69087257-69087276 | Msa0517460:intron | 40.0% | |
| GGAGATATTAAACCACTCAC+TGG | - | chr3_4:69087278-69087297 | Msa0517460:intron | 40.0% | |
| AAACCACTCACTGGATCAAA+TGG | - | chr3_4:69087287-69087306 | Msa0517460:intron | 40.0% | |
| CTAAGACAATACACAACCCT+CGG | + | chr3_4:69087479-69087498 | None:intergenic | 40.0% | |
| TGTTCTTGAGAAGAGAGGTG+TGG | + | chr3_4:69083100-69083119 | None:intergenic | 45.0% | |
| CATTGGCACTCCCTATTATG+AGG | + | chr3_4:69083232-69083251 | None:intergenic | 45.0% | |
| GCAATCCGCTATATCAAAGG+AGG | - | chr3_4:69083319-69083338 | Msa0517460:three_prime_UTR | 45.0% | |
| TCGTGCCTCCTTTGATATAG+CGG | + | chr3_4:69083327-69083346 | None:intergenic | 45.0% | |
| CCAAACATTATGGTCCTACC+CGG | - | chr3_4:69084208-69084227 | Msa0517460:intron | 45.0% | |
| ATTAATCTCTCGAACCGGGT+AGG | + | chr3_4:69084225-69084244 | None:intergenic | 45.0% | |
| ATTTCTACCGTCGGATGTAG+AGG | - | chr3_4:69084243-69084262 | Msa0517460:intron | 45.0% | |
| TGCAAGGATAAAACCCACCA+TGG | - | chr3_4:69084361-69084380 | Msa0517460:intron | 45.0% | |
| GCAAGGATAAAACCCACCAT+GGG | - | chr3_4:69084362-69084381 | Msa0517460:intron | 45.0% | |
| ! | TTGCAATTATAGGGGTGCGA+TGG | - | chr3_4:69085843-69085862 | Msa0517460:intron | 45.0% |
| ! | TGCAATTATAGGGGTGCGAT+GGG | - | chr3_4:69085844-69085863 | Msa0517460:intron | 45.0% |
| CTCGAACAGAGTTCCTATTC+GGG | + | chr3_4:69085920-69085939 | None:intergenic | 45.0% | |
| CCTCGAACAGAGTTCCTATT+CGG | + | chr3_4:69085921-69085940 | None:intergenic | 45.0% | |
| TCAGCACATGATACAACTCC+TGG | + | chr3_4:69085990-69086009 | None:intergenic | 45.0% | |
| !! | TAAGGTTGGAAGTTGGTGCT+GGG | + | chr3_4:69086255-69086274 | None:intergenic | 45.0% |
| !! | TTAAGGTTGGAAGTTGGTGC+TGG | + | chr3_4:69086256-69086275 | None:intergenic | 45.0% |
| !! | GAATGTTGGTCTTTCCACCA+AGG | - | chr3_4:69086297-69086316 | Msa0517460:intron | 45.0% |
| TGACAATGCGACTAAGTCCT+TGG | + | chr3_4:69086317-69086336 | None:intergenic | 45.0% | |
| AAGGACTTAGTCGCATTGTC+AGG | - | chr3_4:69086316-69086335 | Msa0517460:intron | 45.0% | |
| TGACTAGGTGCTCACACAAT+TGG | - | chr3_4:69086945-69086964 | Msa0517460:intron | 45.0% | |
| CTCACACAATTGGACAAGCA+AGG | - | chr3_4:69086955-69086974 | Msa0517460:intron | 45.0% | |
| ! | GACCAACAACTTTTCAACGG+CGG | - | chr3_4:69087173-69087192 | Msa0517460:intron | 45.0% |
| ! | ACCAACAACTTTTCAACGGC+GGG | - | chr3_4:69087174-69087193 | Msa0517460:intron | 45.0% |
| TCCACCAACTCAATAGTGAG+TGG | - | chr3_4:69087197-69087216 | Msa0517460:intron | 45.0% | |
| TCCCATCTTGATCATAGCAG+TGG | + | chr3_4:69087261-69087280 | None:intergenic | 45.0% | |
| TCTCCATTTGATCCAGTGAG+TGG | + | chr3_4:69087293-69087312 | None:intergenic | 45.0% | |
| !!! | AAAAGTATAAATTAAAAATA+TGG | - | chr3_4:69084972-69084991 | Msa0517460:intron | 5.0% |
| !! | AAAATTAAACTTAAATAAAA+TGG | - | chr3_4:69085348-69085367 | Msa0517460:intron | 5.0% |
| !! | AAATTAAACTTAAATAAAAT+GGG | - | chr3_4:69085349-69085368 | Msa0517460:intron | 5.0% |
| !! | TAATTCAAATATATAATTTA+AGG | - | chr3_4:69086389-69086408 | Msa0517460:intron | 5.0% |
| ! | TTGCACTTGGCGTTGGACAA+TGG | + | chr3_4:69083303-69083322 | None:intergenic | 50.0% |
| ACTTGAAGCTTGCCCTGATC+TGG | + | chr3_4:69083726-69083745 | None:intergenic | 50.0% | |
| CCGGGTAGGACCATAATGTT+TGG | + | chr3_4:69084211-69084230 | None:intergenic | 50.0% | |
| CGAATGTCCTCTACATCCGA+CGG | + | chr3_4:69084253-69084272 | None:intergenic | 50.0% | |
| AGAAGAACGCACTCCCGAAT+AGG | - | chr3_4:69085904-69085923 | Msa0517460:intron | 50.0% | |
| CCGAATAGGAACTCTGTTCG+AGG | - | chr3_4:69085918-69085937 | Msa0517460:intron | 50.0% | |
| GCCGTAGAGAACATATGTCC+AGG | - | chr3_4:69085969-69085988 | Msa0517460:intron | 50.0% | |
| AACAGAGTCTGTGGCAGCAA+TGG | + | chr3_4:69086021-69086040 | None:intergenic | 50.0% | |
| AGCAGATTGACTAGCAGTCG+TGG | + | chr3_4:69086218-69086237 | None:intergenic | 50.0% | |
| CAATGCGACTAAGTCCTTGG+TGG | + | chr3_4:69086314-69086333 | None:intergenic | 50.0% | |
| TGCCCAAAGACATCAGGATC+AGG | - | chr3_4:69087053-69087072 | Msa0517460:intron | 50.0% | |
| GCCCAAAGACATCAGGATCA+GGG | - | chr3_4:69087054-69087073 | Msa0517460:intron | 50.0% | |
| CCCCTGATCCTGATGTCTTT+GGG | + | chr3_4:69087058-69087077 | None:intergenic | 50.0% | |
| CCCAAAGACATCAGGATCAG+GGG | - | chr3_4:69087055-69087074 | Msa0517460:intron | 50.0% | |
| TCCCCTGATCCTGATGTCTT+TGG | + | chr3_4:69087059-69087078 | None:intergenic | 50.0% | |
| ! | GTGGGAGTATGGAGATCAAG+AGG | + | chr3_4:69087095-69087114 | None:intergenic | 50.0% |
| ACCCGCCGTTGAAAAGTTGT+TGG | + | chr3_4:69087178-69087197 | None:intergenic | 50.0% | |
| !! | GCCACTCACTATTGAGTTGG+TGG | + | chr3_4:69087201-69087220 | None:intergenic | 50.0% |
| !! | TAGCGGATTGCACTTGGCGT+TGG | + | chr3_4:69083310-69083329 | None:intergenic | 55.0% |
| TCTGGGTGCTCACCAGATCA+GGG | - | chr3_4:69083711-69083730 | Msa0517460:CDS | 55.0% | |
| AGTCTGTGGCAGCAATGGCT+AGG | + | chr3_4:69086016-69086035 | None:intergenic | 55.0% | |
| !! | GTTGGAAGTTGGTGCTGGGA+TGG | + | chr3_4:69086251-69086270 | None:intergenic | 55.0% |
| CTCTGGGTGCTCACCAGATC+AGG | - | chr3_4:69083710-69083729 | Msa0517460:CDS | 60.0% | |
| ! | GATAGCTTGGTGGCCCAACC+TGG | - | chr3_4:69086167-69086186 | Msa0517460:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 69083094 | 69087642 | 69083094 | ID=Msa0517460;Name=Msa0517460 |
| chr3_4 | mRNA | 69083094 | 69087642 | 69083094 | ID=Msa0517460-mRNA-1;Parent=Msa0517460;Name=Msa0517460-mRNA-1;_AED=0.36;_eAED=0.36;_QI=82|1|1|1|1|1|4|299|322 |
| chr3_4 | exon | 69083094 | 69083784 | 69083094 | ID=Msa0517460-mRNA-1:exon:18370;Parent=Msa0517460-mRNA-1 |
| chr3_4 | exon | 69084399 | 69084564 | 69084399 | ID=Msa0517460-mRNA-1:exon:18369;Parent=Msa0517460-mRNA-1 |
| chr3_4 | exon | 69084690 | 69084881 | 69084690 | ID=Msa0517460-mRNA-1:exon:18368;Parent=Msa0517460-mRNA-1 |
| chr3_4 | exon | 69087342 | 69087642 | 69087342 | ID=Msa0517460-mRNA-1:exon:18367;Parent=Msa0517460-mRNA-1 |
| chr3_4 | five_prime_UTR | 69087561 | 69087642 | 69087561 | ID=Msa0517460-mRNA-1:five_prime_utr;Parent=Msa0517460-mRNA-1 |
| chr3_4 | CDS | 69087342 | 69087560 | 69087342 | ID=Msa0517460-mRNA-1:cds;Parent=Msa0517460-mRNA-1 |
| chr3_4 | CDS | 69084690 | 69084881 | 69084690 | ID=Msa0517460-mRNA-1:cds;Parent=Msa0517460-mRNA-1 |
| chr3_4 | CDS | 69084399 | 69084564 | 69084399 | ID=Msa0517460-mRNA-1:cds;Parent=Msa0517460-mRNA-1 |
| chr3_4 | CDS | 69083393 | 69083784 | 69083393 | ID=Msa0517460-mRNA-1:cds;Parent=Msa0517460-mRNA-1 |
| chr3_4 | three_prime_UTR | 69083094 | 69083392 | 69083094 | ID=Msa0517460-mRNA-1:three_prime_utr;Parent=Msa0517460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
