AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0503220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0503220 MtrunA17_Chr3g0100211 100.000 229 0 0 1 229 1 229 2.28e-169 465
Msa0503220 MtrunA17_Chr8g0349161 99.127 229 2 0 1 229 1 229 1.08e-168 463
Msa0503220 MtrunA17_Chr5g0445021 77.536 138 28 1 3 137 2 139 5.49e-72 217
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0503220 AT1G79590.1 74.678 233 55 2 1 229 1 233 1.29e-123 350
Msa0503220 AT1G79590.2 74.678 233 55 2 1 229 1 233 1.29e-123 350
Msa0503220 AT1G79590.3 74.678 233 55 2 1 229 32 264 3.38e-123 350
Msa0503220 AT1G16240.2 72.414 232 61 2 1 229 1 232 7.02e-122 345
Msa0503220 AT1G16240.1 72.414 232 61 2 1 229 1 232 7.02e-122 345
Msa0503220 AT1G16240.4 72.414 232 61 2 1 229 1 232 7.02e-122 345
Msa0503220 AT1G16240.3 72.021 193 51 2 1 190 1 193 1.30e-94 276
Msa0503220 AT1G16230.1 56.545 191 80 2 1 189 1 190 5.50e-66 202
Msa0503220 AT1G16225.2 47.938 194 96 2 1 192 1 191 5.76e-50 162
Msa0503220 AT1G16225.1 47.647 170 84 2 25 192 1 167 6.92e-40 136
Msa0503220 AT1G16225.3 46.763 139 69 2 1 137 1 136 4.99e-32 114
Msa0503220 AT1G28490.1 25.911 247 154 10 1 222 1 243 3.76e-11 61.6
Msa0503220 AT1G28490.2 29.940 167 100 6 72 222 39 204 7.59e-11 60.1
Msa0503220 AT1G28490.3 29.940 167 100 6 72 222 33 198 7.88e-11 60.1

Find 78 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCATCTGGTTTAATTTC+TGG 0.179304 3_4:-46198271 None:intergenic
ACATGTCAAACTTTGCAAAT+AGG 0.204618 3_4:+46198233 Msa0503220:CDS
GATGCATGACGTTGTGTTTC+TGG 0.219951 3_4:-46197763 None:intergenic
CAAATTTCACCTGCAAATTT+AGG 0.241889 3_4:-46195675 None:intergenic
AAGAAGGAAAATCACAATAT+TGG 0.253542 3_4:+46197792 Msa0503220:CDS
GGTTCTTGTCATATGGCTTC+TGG 0.253840 3_4:+46199417 Msa0503220:CDS
AGAAGGAAAATCACAATATT+GGG 0.265836 3_4:+46197793 Msa0503220:CDS
TTCTCTTCTCACTCAATAAT+AGG 0.275155 3_4:-46199717 None:intergenic
AGATGAGGGCCTTGAGAAAT+TGG 0.280110 3_4:+46198443 Msa0503220:CDS
CATGTCAAACTTTGCAAATA+GGG 0.294997 3_4:+46198234 Msa0503220:CDS
CATAATTCATTTCCTTCATC+TGG 0.315930 3_4:+46197739 Msa0503220:CDS
CAGCTGAATACTCACTTTAC+AGG 0.320411 3_4:-46197856 None:intergenic
TGGGTTTGGTTCTTGTCATA+TGG 0.348542 3_4:+46199410 Msa0503220:CDS
AGTGATTGGTATAGTGGGTT+TGG 0.352039 3_4:+46199396 Msa0503220:CDS
ACAGTTCTGCTCATTGCATC+TGG 0.359258 3_4:-46198283 None:intergenic
ACTTTCTCTGAATTAGGGTT+TGG 0.389473 3_4:-46195645 None:intergenic
ATTAGCAGTGATTGGTATAG+TGG 0.391361 3_4:+46199390 Msa0503220:CDS
TGTTCAAAGTTGAAGCCATT+TGG 0.405777 3_4:-46198213 None:intergenic
GGGATTGCAAGCTATCTAAT+CGG 0.411055 3_4:-46197819 None:intergenic
ATATGATATGATATGTTTCA+AGG 0.426347 3_4:-46199515 None:intergenic
CTCAATACATTCCATGTCAT+TGG 0.429668 3_4:-46199573 None:intergenic
ATGTAGATGTCACAGATTCT+CGG 0.431976 3_4:+46198651 Msa0503220:CDS
TTCTTCAGACTCATGGTTGA+AGG 0.435094 3_4:+46197663 Msa0503220:CDS
TTACAGGGAGCTTTGACAAA+AGG 0.435213 3_4:-46197840 None:intergenic
TACAGGGAGCTTTGACAAAA+GGG 0.439839 3_4:-46197839 None:intergenic
TTGGATAACAATGGACTTGT+TGG 0.440074 3_4:+46198310 Msa0503220:CDS
GAGGTCAAAGGTTAACCAAA+TGG 0.450048 3_4:+46198198 Msa0503220:CDS
ACTCAATAATAGGTGACTTA+AGG 0.462852 3_4:-46199707 None:intergenic
TGTGTTTCTGGTCCAGATGA+AGG 0.467807 3_4:-46197751 None:intergenic
GGAAAAGTTTGCTGAGTTGT+GGG 0.468851 3_4:-46199465 None:intergenic
TTCACCTAATTTCAGGCCAA+TGG 0.473419 3_4:+46197636 Msa0503220:intron
TGGCATCTTCTTCAGACTCA+TGG 0.482083 3_4:+46197656 Msa0503220:CDS
AGGACAACCTTGCAAATTTG+AGG 0.487031 3_4:+46198179 Msa0503220:CDS
CCTTGCAAATTTGAGGTCAA+AGG 0.488877 3_4:+46198186 Msa0503220:CDS
CGACAACAGCGTCACACAAA+CGG 0.493532 3_4:+46195523 Msa0503220:five_prime_UTR
GGGAAAAGTTTGCTGAGTTG+TGG 0.494877 3_4:-46199466 None:intergenic
GCAAATAGGGATAGTTTGCT+CGG 0.495730 3_4:+46198247 Msa0503220:CDS
TTTGGTAATTGAGATGAAAG+AGG 0.518164 3_4:-46195627 None:intergenic
TCGATTGTGCTTCGTATACG+CGG 0.529291 3_4:-46195437 None:intergenic
GGATTGCAAGCTATCTAATC+GGG 0.534842 3_4:-46197818 None:intergenic
GTCATGCATCTGCTATAAGA+AGG 0.539643 3_4:+46197776 Msa0503220:CDS
TTTGTACTTTGCCAATGACA+TGG 0.544189 3_4:+46199562 Msa0503220:three_prime_UTR
ACAGAGAGTGCAGAAGAACT+TGG 0.545697 3_4:+46199318 Msa0503220:intron
TTAGCAGTGATTGGTATAGT+GGG 0.549125 3_4:+46199391 Msa0503220:CDS
TTTACGAAATGTGAATGAAA+CGG 0.550120 3_4:-46195500 None:intergenic
CAAATAGGGATAGTTTGCTC+GGG 0.550659 3_4:+46198248 Msa0503220:CDS
ATGTCACAGATTCTCGGCTG+AGG 0.559797 3_4:+46198657 Msa0503220:CDS
ATGGACTTGTTGGTCTGCAA+CGG 0.564781 3_4:+46198320 Msa0503220:CDS
AATGATAAATAGGTCTGAGA+AGG 0.567578 3_4:+46198141 Msa0503220:intron
CGGTCTCCTCCAATTTCTCA+AGG 0.568939 3_4:-46198452 None:intergenic
GTCACACAAACGGTGCCGCT+CGG 0.570161 3_4:+46195533 Msa0503220:five_prime_UTR
TGCATGCTATTAGCAGTGAT+TGG 0.573326 3_4:+46199382 Msa0503220:CDS
CCTTTGACCTCAAATTTGCA+AGG 0.577028 3_4:-46198186 None:intergenic
GAATGTATTGAGGTCTTGAA+AGG 0.580785 3_4:+46199584 Msa0503220:three_prime_UTR
TTTCTAACAGAGCAAGATGA+GGG 0.582199 3_4:+46198429 Msa0503220:intron
CTGCAACGGCAAGTTATGAA+AGG 0.592264 3_4:+46198334 Msa0503220:CDS
TGAGGGCCTTGAGAAATTGG+AGG 0.594430 3_4:+46198446 Msa0503220:CDS
AAGTACAAAACATATTGCGT+TGG 0.595524 3_4:+46198479 Msa0503220:CDS
TGTCACAGATTCTCGGCTGA+GGG 0.596979 3_4:+46198658 Msa0503220:CDS
GATGCAATGAGCAGAACTGT+TGG 0.597248 3_4:+46198286 Msa0503220:CDS
TTAAACAAACGTACTAAGGG+TGG 0.598231 3_4:+46199346 Msa0503220:CDS
CATTCAGAAACATAAACACA+AGG 0.604633 3_4:-46199488 None:intergenic
AATGAGCAGAACTGTTGGCT+TGG 0.609524 3_4:+46198291 Msa0503220:CDS
GAAGGAAAATCACAATATTG+GGG 0.609732 3_4:+46197794 Msa0503220:CDS
CAATGACATGGAATGTATTG+AGG 0.609822 3_4:+46199574 Msa0503220:three_prime_UTR
AGCTGAATACTCACTTTACA+GGG 0.612522 3_4:-46197855 None:intergenic
GAGTCTGAAGAAGATGCCAT+TGG 0.624414 3_4:-46197652 None:intergenic
ATTCAGAAACATAAACACAA+GGG 0.630462 3_4:-46199487 None:intergenic
TTCAGAAACATAAACACAAG+GGG 0.631880 3_4:-46199486 None:intergenic
CGATTGTGCTTCGTATACGC+GGG 0.633504 3_4:-46195436 None:intergenic
AACGGCGCGGTAGCACCGAG+CGG 0.634213 3_4:-46195548 None:intergenic
ACTGTTGGCTTGGATAACAA+TGG 0.640180 3_4:+46198301 Msa0503220:CDS
ATAGGAAGAAAGTAGCGTAA+CGG 0.666167 3_4:-46195566 None:intergenic
GAAGGAGATGAATCGTCGCA+AGG 0.666742 3_4:+46198159 Msa0503220:CDS
AAAGAACAATCGAAGAACCT+CGG 0.669452 3_4:-46199542 None:intergenic
AAACTTGCTGATGATATCAG+TGG 0.699595 3_4:+46197703 Msa0503220:CDS
TATCATATCATATATAACCG+AGG 0.706995 3_4:+46199525 Msa0503220:three_prime_UTR
AAGAAAGTAGCGTAACGGCG+CGG 0.726925 3_4:-46195561 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTATAATTATATGAAAA+TGG - chr3_4:46198010-46198029 None:intergenic 10.0%
!!! TTTTTTTTAGTTTTGAATTC+TGG + chr3_4:46195740-46195759 Msa0503220:intron 15.0%
!! AAATCAATGATGTTAAATAA+CGG - chr3_4:46196176-46196195 None:intergenic 15.0%
!! AAATTATTAGATATAGAGAT+AGG + chr3_4:46196361-46196380 Msa0503220:intron 15.0%
!! TATAAAAATAGCTTATACAT+AGG - chr3_4:46196486-46196505 None:intergenic 15.0%
!!! TTCTATTTTTAAATGTCTTA+TGG + chr3_4:46197127-46197146 Msa0503220:intron 15.0%
!! ATAATTATATGAAAATGGTA+AGG - chr3_4:46198005-46198024 None:intergenic 15.0%
!!! AATATGTTTTGTACTTAATA+CGG - chr3_4:46198475-46198494 None:intergenic 15.0%
!! TGGAAATATAATCATTAATT+TGG + chr3_4:46198930-46198949 Msa0503220:intron 15.0%
!! GGAAATATAATCATTAATTT+GGG + chr3_4:46198931-46198950 Msa0503220:intron 15.0%
!! TATAAATTATTGAATATCTG+TGG + chr3_4:46199092-46199111 Msa0503220:intron 15.0%
!!! AAGATAAAATTGTCATTTTT+CGG + chr3_4:46199126-46199145 Msa0503220:intron 15.0%
!! AAAAAACTTTCTCTGAATTA+GGG - chr3_4:46195653-46195672 None:intergenic 20.0%
!!! AAAGGTGGTTAATTTTTTTT+TGG + chr3_4:46195881-46195900 Msa0503220:intron 20.0%
!!! AAGGTGGTTAATTTTTTTTT+GGG + chr3_4:46195882-46195901 Msa0503220:intron 20.0%
!! TTTCCAAAAAAAAAGTAAAC+CGG - chr3_4:46196344-46196363 None:intergenic 20.0%
!! TACAAATGTTTATCTAAACA+GGG - chr3_4:46196420-46196439 None:intergenic 20.0%
!! ATACAAATGTTTATCTAAAC+AGG - chr3_4:46196421-46196440 None:intergenic 20.0%
!! TAAAGCTTGAAATAGATTAA+AGG - chr3_4:46196675-46196694 None:intergenic 20.0%
!! CATATAAATATTTGAGAAAG+CGG + chr3_4:46196723-46196742 Msa0503220:intron 20.0%
!! TTAAACATAATTGATAGAGA+AGG + chr3_4:46196752-46196771 Msa0503220:intron 20.0%
!!! TATCTAGATTGTTGATTATA+TGG + chr3_4:46197488-46197507 Msa0503220:intron 20.0%
!!! TTATTCTGAAAAATGTTTTG+TGG + chr3_4:46197961-46197980 Msa0503220:intron 20.0%
!! TTCTTTGTCAAATGATAAAT+AGG + chr3_4:46198131-46198150 Msa0503220:intron 20.0%
!! TTAGCAAAGAAAATTAACAT+AGG - chr3_4:46198555-46198574 None:intergenic 20.0%
!!! TGAATCTTTTATTTTCTTCT+AGG + chr3_4:46198613-46198632 Msa0503220:intron 20.0%
!! CAAAATACTTATCAGAATTA+AGG - chr3_4:46198827-46198846 None:intergenic 20.0%
!!! AAATAGATGTACCATATTTT+TGG + chr3_4:46198891-46198910 Msa0503220:intron 20.0%
!! AAAAAAACTTAAAAGGGAAA+AGG - chr3_4:46199221-46199240 None:intergenic 20.0%
!!! AATTTTAAACAAACGTACTA+AGG + chr3_4:46199342-46199361 Msa0503220:CDS 20.0%
!!! ATTTTAAACAAACGTACTAA+GGG + chr3_4:46199343-46199362 Msa0503220:CDS 20.0%
!! ATATGATATGATATGTTTCA+AGG - chr3_4:46199518-46199537 None:intergenic 20.0%
! TTTACGAAATGTGAATGAAA+CGG - chr3_4:46195503-46195522 None:intergenic 25.0%
! GAAAAAACTTTCTCTGAATT+AGG - chr3_4:46195654-46195673 None:intergenic 25.0%
!!! ACGTGTTTTTTTTTTTTGTG+TGG + chr3_4:46195787-46195806 Msa0503220:intron 25.0%
!!! TGGTTGATTTTGACTTTTTT+GGG + chr3_4:46195807-46195826 Msa0503220:intron 25.0%
!!! AATAGATGAATTTGTTGTTG+AGG + chr3_4:46195983-46196002 Msa0503220:intron 25.0%
! CTGTACTAAATAGTTTATTG+CGG + chr3_4:46196102-46196121 Msa0503220:intron 25.0%
!!! ATCATTGATTTTGCTTTAGA+AGG + chr3_4:46196185-46196204 Msa0503220:intron 25.0%
!!! TATCCGGTTTACTTTTTTTT+TGG + chr3_4:46196338-46196357 Msa0503220:intron 25.0%
!!! GCTATTTTCATAAGTTATCT+TGG + chr3_4:46196542-46196561 Msa0503220:intron 25.0%
!!! ACGTATTTTAGTTTATCTAC+TGG - chr3_4:46196639-46196658 None:intergenic 25.0%
!! ATTTCAAGCTTTAATAGCAA+TGG + chr3_4:46196682-46196701 Msa0503220:intron 25.0%
!! TAGTTTTTCTCTCACTTAAT+AGG + chr3_4:46196975-46196994 Msa0503220:intron 25.0%
! AACTTAGTAAGTAAAACACA+TGG - chr3_4:46197098-46197117 None:intergenic 25.0%
! AAAAACTTTAAGTACTTTCC+AGG - chr3_4:46197463-46197482 None:intergenic 25.0%
!!! TGGAAAGTACTTAAAGTTTT+TGG + chr3_4:46197462-46197481 Msa0503220:intron 25.0%
!!! GGAAAGTACTTAAAGTTTTT+GGG + chr3_4:46197463-46197482 Msa0503220:intron 25.0%
! AAAAAGAAAGCAAAAATGAG+AGG - chr3_4:46197618-46197637 None:intergenic 25.0%
!!! TTTCTTTTTCACCTAATTTC+AGG + chr3_4:46197629-46197648 Msa0503220:intron 25.0%
! AAGAAGGAAAATCACAATAT+TGG + chr3_4:46197792-46197811 Msa0503220:CDS 25.0%
! AGAAGGAAAATCACAATATT+GGG + chr3_4:46197793-46197812 Msa0503220:CDS 25.0%
!!! AAAAAGCATCATATTACTAC+AGG - chr3_4:46197943-46197962 None:intergenic 25.0%
!! GAAATACATAATTTGTGCTT+TGG + chr3_4:46198385-46198404 Msa0503220:intron 25.0%
! CAAAGAAAATTAACATAGGA+TGG - chr3_4:46198551-46198570 None:intergenic 25.0%
!! AAGTATTTTGTCTCAGAATT+AGG + chr3_4:46198837-46198856 Msa0503220:intron 25.0%
!! ATCTATTTGAAATGTCAGAT+TGG - chr3_4:46198879-46198898 None:intergenic 25.0%
!!! ATGTTGTTACTTTTTGTATG+AGG + chr3_4:46199016-46199035 Msa0503220:intron 25.0%
! GTAAACTTACATAGTTAACT+AGG + chr3_4:46199063-46199082 Msa0503220:intron 25.0%
! TATCACAAAAGAAACAGAAA+AGG - chr3_4:46199298-46199317 None:intergenic 25.0%
! ATTCAGAAACATAAACACAA+GGG - chr3_4:46199490-46199509 None:intergenic 25.0%
! TATCATATCATATATAACCG+AGG + chr3_4:46199525-46199544 Msa0503220:three_prime_UTR 25.0%
! TTTGGTAATTGAGATGAAAG+AGG - chr3_4:46195630-46195649 None:intergenic 30.0%
CAAATTTCACCTGCAAATTT+AGG - chr3_4:46195678-46195697 None:intergenic 30.0%
! TGAATTCTGGATTGTGTTTT+TGG + chr3_4:46195753-46195772 Msa0503220:intron 30.0%
!!! GTGGTTGATTTTGACTTTTT+TGG + chr3_4:46195806-46195825 Msa0503220:intron 30.0%
!! GTGTACGATTTTGATGTTAA+AGG + chr3_4:46195863-46195882 Msa0503220:intron 30.0%
!! TACGATTTTGATGTTAAAGG+TGG + chr3_4:46195866-46195885 Msa0503220:intron 30.0%
!!! TTTTTTTTGGGATTTCGTGA+TGG + chr3_4:46195894-46195913 Msa0503220:intron 30.0%
!!! TTTTTTTGGGATTTCGTGAT+GGG + chr3_4:46195895-46195914 Msa0503220:intron 30.0%
!!! GGCATTTAGTTTGGTTTTTT+AGG + chr3_4:46196004-46196023 Msa0503220:intron 30.0%
! CAGTGTGTCAAAATTTTCTA+CGG - chr3_4:46196085-46196104 None:intergenic 30.0%
TATTCATGAGGTTTATGTGA+TGG + chr3_4:46196301-46196320 Msa0503220:intron 30.0%
! ATAGAGATAGGAATTTTCGA+AGG + chr3_4:46196373-46196392 Msa0503220:intron 30.0%
AAAATCTCATGCTATTCACA+TGG - chr3_4:46196451-46196470 None:intergenic 30.0%
! AAATAGATTAAAGGCATGTC+TGG - chr3_4:46196666-46196685 None:intergenic 30.0%
ATTCAAAGACACTCTAACAA+AGG - chr3_4:46196796-46196815 None:intergenic 30.0%
! GTCTAAAATTGACTCAAAGA+AGG - chr3_4:46196835-46196854 None:intergenic 30.0%
! TCAATTTTAGACACGTAATC+AGG + chr3_4:46196843-46196862 Msa0503220:intron 30.0%
GTAATCAGGTAAAGTTTCTA+GGG + chr3_4:46196857-46196876 Msa0503220:intron 30.0%
GAGAGAAAAACTACAAAGTT+AGG - chr3_4:46196968-46196987 None:intergenic 30.0%
!!! CTTTTTTTCAAGATACTAGC+TGG + chr3_4:46197072-46197091 Msa0503220:intron 30.0%
AAGTTGGATACAATGTATGT+TGG + chr3_4:46197177-46197196 Msa0503220:intron 30.0%
AACATGAAATGAATACTACC+TGG - chr3_4:46197409-46197428 None:intergenic 30.0%
TTCATTTCATGTTAATCACG+TGG + chr3_4:46197416-46197435 Msa0503220:intron 30.0%
!! TCTTTCTCTTGTTTCAGTTT+TGG + chr3_4:46197513-46197532 Msa0503220:intron 30.0%
CATAATTCATTTCCTTCATC+TGG + chr3_4:46197739-46197758 Msa0503220:CDS 30.0%
GAAGGAAAATCACAATATTG+GGG + chr3_4:46197794-46197813 Msa0503220:CDS 30.0%
TTGTTTACCCTGATTAAGAA+AGG + chr3_4:46197879-46197898 Msa0503220:intron 30.0%
AAATGGTAAGGAGATAGATA+TGG - chr3_4:46197993-46198012 None:intergenic 30.0%
AATGATAAATAGGTCTGAGA+AGG + chr3_4:46198141-46198160 Msa0503220:intron 30.0%
ACATGTCAAACTTTGCAAAT+AGG + chr3_4:46198233-46198252 Msa0503220:CDS 30.0%
CATGTCAAACTTTGCAAATA+GGG + chr3_4:46198234-46198253 Msa0503220:CDS 30.0%
! ATTGCATCTGGTTTAATTTC+TGG - chr3_4:46198274-46198293 None:intergenic 30.0%
!! TGTGCTTTGGATATTGATTT+CGG + chr3_4:46198398-46198417 Msa0503220:intron 30.0%
AAGTACAAAACATATTGCGT+TGG + chr3_4:46198479-46198498 Msa0503220:CDS 30.0%
!!! TATTTTCTTCTAGGATGACT+TGG + chr3_4:46198622-46198641 Msa0503220:intron 30.0%
TATATGCCTAAAGAAAGTTG+TGG - chr3_4:46198695-46198714 None:intergenic 30.0%
CGTACATCAAACCAAAAATA+TGG - chr3_4:46198905-46198924 None:intergenic 30.0%
!!! AAAATTGTCATTTTTCGGCT+AGG + chr3_4:46199131-46199150 Msa0503220:intron 30.0%
TTCAGAAACATAAACACAAG+GGG - chr3_4:46199489-46199508 None:intergenic 30.0%
CATTCAGAAACATAAACACA+AGG - chr3_4:46199491-46199510 None:intergenic 30.0%
ACTCAATAATAGGTGACTTA+AGG - chr3_4:46199710-46199729 None:intergenic 30.0%
TTCTCTTCTCACTCAATAAT+AGG - chr3_4:46199720-46199739 None:intergenic 30.0%
ATAGGAAGAAAGTAGCGTAA+CGG - chr3_4:46195569-46195588 None:intergenic 35.0%
!!! ATACGATGTCGTTTTAGGAT+AGG - chr3_4:46195587-46195606 None:intergenic 35.0%
ACTTTCTCTGAATTAGGGTT+TGG - chr3_4:46195648-46195667 None:intergenic 35.0%
!!! GTTTTTTCGCCTAAATTTGC+AGG + chr3_4:46195666-46195685 Msa0503220:five_prime_UTR 35.0%
AAAACGAACAGATCGTAAAG+TGG - chr3_4:46195704-46195723 None:intergenic 35.0%
!! TCATTGTTTCTGTGATCATG+AGG + chr3_4:46195937-46195956 Msa0503220:intron 35.0%
! TGTTGTTGAGGCATTTAGTT+TGG + chr3_4:46195995-46196014 Msa0503220:intron 35.0%
!!! GTTTGGTTTTTTAGGTGAAG+AGG + chr3_4:46196012-46196031 Msa0503220:intron 35.0%
AATAGTTTATTGCGGAACAG+TGG + chr3_4:46196110-46196129 Msa0503220:intron 35.0%
ATGTTAAATAACGGCTAGAG+AGG - chr3_4:46196167-46196186 None:intergenic 35.0%
!!! GATTTTGCTTTAGAAGGATG+TGG + chr3_4:46196191-46196210 Msa0503220:intron 35.0%
TTGACTATCAACCATTGAAC+CGG - chr3_4:46196257-46196276 None:intergenic 35.0%
!! GTTCAATGGTTGATAGTCAA+GGG + chr3_4:46196257-46196276 Msa0503220:intron 35.0%
!! AGGAATTTTCGAAGGAGTAT+AGG + chr3_4:46196381-46196400 Msa0503220:intron 35.0%
AAGTACTTGTGTGACTGTTT+GGG - chr3_4:46196613-46196632 None:intergenic 35.0%
TAAGTACTTGTGTGACTGTT+TGG - chr3_4:46196614-46196633 None:intergenic 35.0%
CTTTAATAGCAATGGTGTGT+TGG + chr3_4:46196690-46196709 Msa0503220:intron 35.0%
CATAATTGATAGAGAAGGCT+TGG + chr3_4:46196757-46196776 Msa0503220:intron 35.0%
CGTAATCAGGTAAAGTTTCT+AGG + chr3_4:46196856-46196875 Msa0503220:intron 35.0%
! AGGTAAAGTTTCTAGGGATT+TGG + chr3_4:46196863-46196882 Msa0503220:intron 35.0%
CTGTTAGTTAGCTACATAGA+AGG - chr3_4:46196936-46196955 None:intergenic 35.0%
ACTACAAAGTTAGGAAGACA+TGG - chr3_4:46196959-46196978 None:intergenic 35.0%
TTGGATACAATGTATGTTGG+TGG + chr3_4:46197180-46197199 Msa0503220:intron 35.0%
ACACTGTAACATTGACACAA+TGG - chr3_4:46197241-46197260 None:intergenic 35.0%
! TTTTATGAGTTTCTCTAGCC+AGG + chr3_4:46197388-46197407 Msa0503220:intron 35.0%
TTCATGTTAATCACGTGGAA+TGG + chr3_4:46197421-46197440 Msa0503220:intron 35.0%
!!! GGAAAAGCTCTTTATTTTCC+TGG + chr3_4:46197442-46197461 Msa0503220:intron 35.0%
!! AAACTTGCTGATGATATCAG+TGG + chr3_4:46197703-46197722 Msa0503220:CDS 35.0%
AGCTGAATACTCACTTTACA+GGG - chr3_4:46197858-46197877 None:intergenic 35.0%
TTACCCTGATTAAGAAAGGA+TGG + chr3_4:46197883-46197902 Msa0503220:intron 35.0%
TGTTCAAAGTTGAAGCCATT+TGG - chr3_4:46198216-46198235 None:intergenic 35.0%
! TTGGATAACAATGGACTTGT+TGG + chr3_4:46198310-46198329 Msa0503220:CDS 35.0%
! TTTTCTAACAGAGCAAGATG+AGG + chr3_4:46198428-46198447 Msa0503220:intron 35.0%
TTTCTAACAGAGCAAGATGA+GGG + chr3_4:46198429-46198448 Msa0503220:intron 35.0%
ATGTAGATGTCACAGATTCT+CGG + chr3_4:46198651-46198670 Msa0503220:CDS 35.0%
CTCTTACCACAACTTTCTTT+AGG + chr3_4:46198686-46198705 Msa0503220:intron 35.0%
! TTGGTTTGATGTACGTTGTT+TGG + chr3_4:46198910-46198929 Msa0503220:intron 35.0%
TTAAACAAACGTACTAAGGG+TGG + chr3_4:46199346-46199365 Msa0503220:CDS 35.0%
ATTAGCAGTGATTGGTATAG+TGG + chr3_4:46199390-46199409 Msa0503220:CDS 35.0%
TTAGCAGTGATTGGTATAGT+GGG + chr3_4:46199391-46199410 Msa0503220:CDS 35.0%
AAAGAACAATCGAAGAACCT+CGG - chr3_4:46199545-46199564 None:intergenic 35.0%
TTTGTACTTTGCCAATGACA+TGG + chr3_4:46199562-46199581 Msa0503220:three_prime_UTR 35.0%
CTCAATACATTCCATGTCAT+TGG - chr3_4:46199576-46199595 None:intergenic 35.0%
CAATGACATGGAATGTATTG+AGG + chr3_4:46199574-46199593 Msa0503220:three_prime_UTR 35.0%
GAATGTATTGAGGTCTTGAA+AGG + chr3_4:46199584-46199603 Msa0503220:three_prime_UTR 35.0%
!!! GATCGATACGATGTCGTTTT+AGG - chr3_4:46195592-46195611 None:intergenic 40.0%
TTTCTGTGATCATGAGGTGA+TGG + chr3_4:46195943-46195962 Msa0503220:intron 40.0%
! TTGATGGGAGTGGTGTTAAA+TGG + chr3_4:46196227-46196246 Msa0503220:intron 40.0%
! AGTGGTGTTAAATGGAAACC+CGG + chr3_4:46196235-46196254 Msa0503220:intron 40.0%
TAAATGGAAACCCGGTTCAA+TGG + chr3_4:46196243-46196262 Msa0503220:intron 40.0%
TGACTATCAACCATTGAACC+GGG - chr3_4:46196256-46196275 None:intergenic 40.0%
!! GGTTCAATGGTTGATAGTCA+AGG + chr3_4:46196256-46196275 Msa0503220:intron 40.0%
!! AATGGTTGATAGTCAAGGGT+GGG + chr3_4:46196261-46196280 Msa0503220:intron 40.0%
! GGAGTATAGGAGATTTTCGA+AGG + chr3_4:46196394-46196413 Msa0503220:intron 40.0%
TGACTGTTTGGGAGAGTTTA+TGG - chr3_4:46196602-46196621 None:intergenic 40.0%
!!! TTCTAGGGATTTGGCTCTTT+TGG + chr3_4:46196872-46196891 Msa0503220:intron 40.0%
TCTGACCAAGTAGAAACCAA+TGG - chr3_4:46196901-46196920 None:intergenic 40.0%
AAAACCCTTCTCAGGCTATT+TGG + chr3_4:46197013-46197032 Msa0503220:intron 40.0%
TGATCCAAATAGCCTGAGAA+GGG - chr3_4:46197020-46197039 None:intergenic 40.0%
TTGATCCAAATAGCCTGAGA+AGG - chr3_4:46197021-46197040 None:intergenic 40.0%
TGTCTTATGGAACTCAGTTG+CGG + chr3_4:46197140-46197159 Msa0503220:intron 40.0%
GGTCAAAGCTGCAATTAAGT+TGG + chr3_4:46197161-46197180 Msa0503220:intron 40.0%
! GGTTGAGTCTAGCAAGTTTT+TGG + chr3_4:46197201-46197220 Msa0503220:intron 40.0%
TTGATTACACGCTTGTATGC+CGG + chr3_4:46197286-46197305 Msa0503220:intron 40.0%
TTCACCTAATTTCAGGCCAA+TGG + chr3_4:46197636-46197655 Msa0503220:intron 40.0%
TTCTTCAGACTCATGGTTGA+AGG + chr3_4:46197663-46197682 Msa0503220:CDS 40.0%
GTCATGCATCTGCTATAAGA+AGG + chr3_4:46197776-46197795 Msa0503220:CDS 40.0%
GGATTGCAAGCTATCTAATC+GGG - chr3_4:46197821-46197840 None:intergenic 40.0%
GGGATTGCAAGCTATCTAAT+CGG - chr3_4:46197822-46197841 None:intergenic 40.0%
! TACAGGGAGCTTTGACAAAA+GGG - chr3_4:46197842-46197861 None:intergenic 40.0%
! TTACAGGGAGCTTTGACAAA+AGG - chr3_4:46197843-46197862 None:intergenic 40.0%
CAGCTGAATACTCACTTTAC+AGG - chr3_4:46197859-46197878 None:intergenic 40.0%
GCACCATCCTTTCTTAATCA+GGG - chr3_4:46197889-46197908 None:intergenic 40.0%
AGCACCATCCTTTCTTAATC+AGG - chr3_4:46197890-46197909 None:intergenic 40.0%
!! ATGGTGCTATTACAGCAATG+AGG + chr3_4:46197902-46197921 Msa0503220:intron 40.0%
TACTACAGGACATTGAGTTC+AGG - chr3_4:46197929-46197948 None:intergenic 40.0%
! TGTCTTCTTTTGAGCTGCAA+AGG + chr3_4:46198084-46198103 Msa0503220:intron 40.0%
AGGACAACCTTGCAAATTTG+AGG + chr3_4:46198179-46198198 Msa0503220:CDS 40.0%
CCTTTGACCTCAAATTTGCA+AGG - chr3_4:46198189-46198208 None:intergenic 40.0%
! CCTTGCAAATTTGAGGTCAA+AGG + chr3_4:46198186-46198205 Msa0503220:CDS 40.0%
GAGGTCAAAGGTTAACCAAA+TGG + chr3_4:46198198-46198217 Msa0503220:CDS 40.0%
!! GCAAATAGGGATAGTTTGCT+CGG + chr3_4:46198247-46198266 Msa0503220:CDS 40.0%
!! CAAATAGGGATAGTTTGCTC+GGG + chr3_4:46198248-46198267 Msa0503220:CDS 40.0%
!! ACTGTTGGCTTGGATAACAA+TGG + chr3_4:46198301-46198320 Msa0503220:CDS 40.0%
!! GCTTTGGATATTGATTTCGG+AGG + chr3_4:46198401-46198420 Msa0503220:intron 40.0%
TGTCAGATTGGTGAGTATGT+GGG - chr3_4:46198867-46198886 None:intergenic 40.0%
ATGTCAGATTGGTGAGTATG+TGG - chr3_4:46198868-46198887 None:intergenic 40.0%
!!! ATTGTCATTTTTCGGCTAGG+TGG + chr3_4:46199134-46199153 Msa0503220:intron 40.0%
!!! TTGTCATTTTTCGGCTAGGT+GGG + chr3_4:46199135-46199154 Msa0503220:intron 40.0%
TGCATGCTATTAGCAGTGAT+TGG + chr3_4:46199382-46199401 Msa0503220:CDS 40.0%
!! AGTGATTGGTATAGTGGGTT+TGG + chr3_4:46199396-46199415 Msa0503220:CDS 40.0%
!! TGGGTTTGGTTCTTGTCATA+TGG + chr3_4:46199410-46199429 Msa0503220:CDS 40.0%
!! GGAAAAGTTTGCTGAGTTGT+GGG - chr3_4:46199468-46199487 None:intergenic 40.0%
TCGATTGTGCTTCGTATACG+CGG - chr3_4:46195440-46195459 None:intergenic 45.0%
!! TTTGGGATTTCGTGATGGGT+TGG + chr3_4:46195899-46195918 Msa0503220:intron 45.0%
! CTTTAGAAGGATGTGGATGC+CGG + chr3_4:46196198-46196217 Msa0503220:intron 45.0%
!! CAATGGTTGATAGTCAAGGG+TGG + chr3_4:46196260-46196279 Msa0503220:intron 45.0%
GGATTGCTTCTGCTTCTATC+CGG + chr3_4:46196322-46196341 Msa0503220:intron 45.0%
AACAGCGAAAAACCCTTCTC+AGG + chr3_4:46197005-46197024 Msa0503220:intron 45.0%
! GATGCCATTGGCCTGAAATT+AGG - chr3_4:46197643-46197662 None:intergenic 45.0%
GAGTCTGAAGAAGATGCCAT+TGG - chr3_4:46197655-46197674 None:intergenic 45.0%
TGGCATCTTCTTCAGACTCA+TGG + chr3_4:46197656-46197675 Msa0503220:CDS 45.0%
!! TGTGTTTCTGGTCCAGATGA+AGG - chr3_4:46197754-46197773 None:intergenic 45.0%
GATGCATGACGTTGTGTTTC+TGG - chr3_4:46197766-46197785 None:intergenic 45.0%
ACAGTTCTGCTCATTGCATC+TGG - chr3_4:46198286-46198305 None:intergenic 45.0%
GATGCAATGAGCAGAACTGT+TGG + chr3_4:46198286-46198305 Msa0503220:CDS 45.0%
! AATGAGCAGAACTGTTGGCT+TGG + chr3_4:46198291-46198310 Msa0503220:CDS 45.0%
!! ATGGACTTGTTGGTCTGCAA+CGG + chr3_4:46198320-46198339 Msa0503220:CDS 45.0%
CTGCAACGGCAAGTTATGAA+AGG + chr3_4:46198334-46198353 Msa0503220:CDS 45.0%
AGATGAGGGCCTTGAGAAAT+TGG + chr3_4:46198443-46198462 Msa0503220:CDS 45.0%
GTTGTACGCCATGTCATTCA+TGG + chr3_4:46198973-46198992 Msa0503220:intron 45.0%
GCCATGTCATTCATGGATCT+GGG + chr3_4:46198980-46198999 Msa0503220:intron 45.0%
CCATGTCATTCATGGATCTG+GGG + chr3_4:46198981-46199000 Msa0503220:intron 45.0%
CATGTCATTCATGGATCTGG+GGG + chr3_4:46198982-46199001 Msa0503220:intron 45.0%
ATGTCATTCATGGATCTGGG+GGG + chr3_4:46198983-46199002 Msa0503220:intron 45.0%
!!! TGTCATTTTTCGGCTAGGTG+GGG + chr3_4:46199136-46199155 Msa0503220:intron 45.0%
! ACAGAGAGTGCAGAAGAACT+TGG + chr3_4:46199318-46199337 Msa0503220:intron 45.0%
GGTTCTTGTCATATGGCTTC+TGG + chr3_4:46199417-46199436 Msa0503220:CDS 45.0%
!! GGGAAAAGTTTGCTGAGTTG+TGG - chr3_4:46199469-46199488 None:intergenic 45.0%
!! TAAAAAAAAAAAACTTAAAA+GGG - chr3_4:46199227-46199246 None:intergenic 5.0%
!! TTAAAAAAAAAAAACTTAAA+AGG - chr3_4:46199228-46199247 None:intergenic 5.0%
CGATTGTGCTTCGTATACGC+GGG - chr3_4:46195439-46195458 None:intergenic 50.0%
CGACAACAGCGTCACACAAA+CGG + chr3_4:46195523-46195542 Msa0503220:five_prime_UTR 50.0%
AAGAAAGTAGCGTAACGGCG+CGG - chr3_4:46195564-46195583 None:intergenic 50.0%
! CTGTGATCATGAGGTGATGG+TGG + chr3_4:46195946-46195965 Msa0503220:intron 50.0%
!! TGATCATGAGGTGATGGTGG+TGG + chr3_4:46195949-46195968 Msa0503220:intron 50.0%
!! GATCATGAGGTGATGGTGGT+GGG + chr3_4:46195950-46195969 Msa0503220:intron 50.0%
GGAGGTGGCAGTTATTCATG+AGG + chr3_4:46196289-46196308 Msa0503220:intron 50.0%
!! TTGGCTCTTTTGGCAGCCAT+TGG + chr3_4:46196882-46196901 Msa0503220:intron 50.0%
!! GGCAGCCATTGGTTTCTACT+TGG + chr3_4:46196893-46196912 Msa0503220:intron 50.0%
ATTACACGCTTGTATGCCGG+TGG + chr3_4:46197289-46197308 Msa0503220:intron 50.0%
TTACACGCTTGTATGCCGGT+GGG + chr3_4:46197290-46197309 Msa0503220:intron 50.0%
!! GCTGTTTTGAGCAGCTGAGT+AGG + chr3_4:46197318-46197337 Msa0503220:intron 50.0%
GAAGGAGATGAATCGTCGCA+AGG + chr3_4:46198159-46198178 Msa0503220:CDS 50.0%
TGAGGGCCTTGAGAAATTGG+AGG + chr3_4:46198446-46198465 Msa0503220:CDS 50.0%
CGGTCTCCTCCAATTTCTCA+AGG - chr3_4:46198455-46198474 None:intergenic 50.0%
ATGTCACAGATTCTCGGCTG+AGG + chr3_4:46198657-46198676 Msa0503220:CDS 50.0%
TGTCACAGATTCTCGGCTGA+GGG + chr3_4:46198658-46198677 Msa0503220:CDS 50.0%
CGCCATGTCATTCATGGATC+TGG + chr3_4:46198979-46198998 Msa0503220:intron 50.0%
CCCCAGATCCATGAATGACA+TGG - chr3_4:46198984-46199003 None:intergenic 50.0%
TTCATGGATCTGGGGGGATT+TGG + chr3_4:46198989-46199008 Msa0503220:intron 50.0%
TCATGGATCTGGGGGGATTT+GGG + chr3_4:46198990-46199009 Msa0503220:intron 50.0%
!!! GTCATTTTTCGGCTAGGTGG+GGG + chr3_4:46199137-46199156 Msa0503220:intron 50.0%
!! GGTTGATAGTCAAGGGTGGG+AGG + chr3_4:46196264-46196283 Msa0503220:intron 55.0%
TGATAGTCAAGGGTGGGAGG+TGG + chr3_4:46196267-46196286 Msa0503220:intron 55.0%
GATAGTCAAGGGTGGGAGGT+GGG + chr3_4:46196268-46196287 Msa0503220:intron 55.0%
GATAGAGAAGGCTTGGCTGC+TGG + chr3_4:46196764-46196783 Msa0503220:intron 55.0%
TACACGCTTGTATGCCGGTG+GGG + chr3_4:46197291-46197310 Msa0503220:intron 55.0%
TCAAAACAGCAACCCCCCAC+CGG - chr3_4:46197308-46197327 None:intergenic 55.0%
GCTGAGTAGGCTGCAATCTC+TGG + chr3_4:46197331-46197350 Msa0503220:intron 55.0%
!! GTCACACAAACGGTGCCGCT+CGG + chr3_4:46195533-46195552 Msa0503220:five_prime_UTR 60.0%
TGGATGCCGGCGTCTGTTGA+TGG + chr3_4:46196211-46196230 Msa0503220:intron 60.0%
GGATGCCGGCGTCTGTTGAT+GGG + chr3_4:46196212-46196231 Msa0503220:intron 60.0%
CCACTCCCATCAACAGACGC+CGG - chr3_4:46196220-46196239 None:intergenic 60.0%
ACACGCTTGTATGCCGGTGG+GGG + chr3_4:46197292-46197311 Msa0503220:intron 60.0%
TTTCGGCTAGGTGGGGGTGA+TGG + chr3_4:46199143-46199162 Msa0503220:intron 60.0%
TTCGGCTAGGTGGGGGTGAT+GGG + chr3_4:46199144-46199163 Msa0503220:intron 60.0%
! CCGGCGTCTGTTGATGGGAG+TGG + chr3_4:46196217-46196236 Msa0503220:intron 65.0%
AGTCAAGGGTGGGAGGTGGG+AGG + chr3_4:46196271-46196290 Msa0503220:intron 65.0%
CACGCTTGTATGCCGGTGGG+GGG + chr3_4:46197293-46197312 Msa0503220:intron 65.0%
! AACGGCGCGGTAGCACCGAG+CGG - chr3_4:46195551-46195570 None:intergenic 70.0%
CAAGGGTGGGAGGTGGGAGG+TGG + chr3_4:46196274-46196293 Msa0503220:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 46195422 46199790 46195422 ID=Msa0503220;Name=Msa0503220
chr3_4 mRNA 46195422 46199790 46195422 ID=Msa0503220-mRNA-1;Parent=Msa0503220;Name=Msa0503220-mRNA-1;_AED=0.03;_eAED=0.03;_QI=270|1|1|1|0.8|0.83|6|337|229
chr3_4 exon 46195422 46195687 46195422 ID=Msa0503220-mRNA-1:exon:9876;Parent=Msa0503220-mRNA-1
chr3_4 exon 46197651 46197863 46197651 ID=Msa0503220-mRNA-1:exon:9877;Parent=Msa0503220-mRNA-1
chr3_4 exon 46198153 46198355 46198153 ID=Msa0503220-mRNA-1:exon:9878;Parent=Msa0503220-mRNA-1
chr3_4 exon 46198439 46198539 46198439 ID=Msa0503220-mRNA-1:exon:9879;Parent=Msa0503220-mRNA-1
chr3_4 exon 46198635 46198679 46198635 ID=Msa0503220-mRNA-1:exon:9880;Parent=Msa0503220-mRNA-1
chr3_4 exon 46199322 46199790 46199322 ID=Msa0503220-mRNA-1:exon:9881;Parent=Msa0503220-mRNA-1
chr3_4 five_prime_UTR 46195422 46195687 46195422 ID=Msa0503220-mRNA-1:five_prime_utr;Parent=Msa0503220-mRNA-1
chr3_4 five_prime_UTR 46197651 46197654 46197651 ID=Msa0503220-mRNA-1:five_prime_utr;Parent=Msa0503220-mRNA-1
chr3_4 CDS 46197655 46197863 46197655 ID=Msa0503220-mRNA-1:cds;Parent=Msa0503220-mRNA-1
chr3_4 CDS 46198153 46198355 46198153 ID=Msa0503220-mRNA-1:cds;Parent=Msa0503220-mRNA-1
chr3_4 CDS 46198439 46198539 46198439 ID=Msa0503220-mRNA-1:cds;Parent=Msa0503220-mRNA-1
chr3_4 CDS 46198635 46198679 46198635 ID=Msa0503220-mRNA-1:cds;Parent=Msa0503220-mRNA-1
chr3_4 CDS 46199322 46199453 46199322 ID=Msa0503220-mRNA-1:cds;Parent=Msa0503220-mRNA-1
chr3_4 three_prime_UTR 46199454 46199790 46199454 ID=Msa0503220-mRNA-1:three_prime_utr;Parent=Msa0503220-mRNA-1
Gene Sequence

>Msa0503220

ATGGCATCTTCTTCAGACTCATGGTTGAAGGAATACAATGAAGCAATGAAACTTGCTGATGATATCAGTGGCATGATTTCTGAACATAATTCATTTCCTTCATCTGGACCAGAAACACAACGTCATGCATCTGCTATAAGAAGGAAAATCACAATATTGGGGACCCGATTAGATAGCTTGCAATCCCTTTTGTCAAAGCTCCCTGTAAAGTCTGAGAAGGAGATGAATCGTCGCAAGGACAACCTTGCAAATTTGAGGTCAAAGGTTAACCAAATGGCTTCAACTTTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGCTCGGGCCAGAAATTAAACCAGATGCAATGAGCAGAACTGTTGGCTTGGATAACAATGGACTTGTTGGTCTGCAACGGCAAGTTATGAAAGAGCAAGATGAGGGCCTTGAGAAATTGGAGGAGACCGTATTAAGTACAAAACATATTGCGTTGGCAGTGAATGAAGAGCTGACTCTACACACTAGACTCATTGATGACTTGGATGAACATGTAGATGTCACAGATTCTCGGCTGAGGAGAGTGCAGAAGAACTTGGCAATTTTAAACAAACGTACTAAGGGTGGTTGCTCATGCATGTGCATGCTATTAGCAGTGATTGGTATAGTGGGTTTGGTTCTTGTCATATGGCTTCTGGTCAAATATTTGTAG

Protein sequence

>Msa0503220

MASSSDSWLKEYNEAMKLADDISGMISEHNSFPSSGPETQRHASAIRRKITILGTRLDSLQSLLSKLPVKSEKEMNRRKDNLANLRSKVNQMASTLNMSNFANRDSLLGPEIKPDAMSRTVGLDNNGLVGLQRQVMKEQDEGLEKLEETVLSTKHIALAVNEELTLHTRLIDDLDEHVDVTDSRLRRVQKNLAILNKRTKGGCSCMCMLLAVIGIVGLVLVIWLLVKYL*