AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0409300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0409300 MtrunA17_Chr3g0100211 100.000 229 0 0 1 229 1 229 2.28e-169 465
Msa0409300 MtrunA17_Chr8g0349161 99.127 229 2 0 1 229 1 229 1.08e-168 463
Msa0409300 MtrunA17_Chr5g0445021 77.536 138 28 1 3 137 2 139 5.49e-72 217
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0409300 AT1G79590.1 74.678 233 55 2 1 229 1 233 1.29e-123 350
Msa0409300 AT1G79590.2 74.678 233 55 2 1 229 1 233 1.29e-123 350
Msa0409300 AT1G79590.3 74.678 233 55 2 1 229 32 264 3.38e-123 350
Msa0409300 AT1G16240.2 72.414 232 61 2 1 229 1 232 7.02e-122 345
Msa0409300 AT1G16240.1 72.414 232 61 2 1 229 1 232 7.02e-122 345
Msa0409300 AT1G16240.4 72.414 232 61 2 1 229 1 232 7.02e-122 345
Msa0409300 AT1G16240.3 72.021 193 51 2 1 190 1 193 1.30e-94 276
Msa0409300 AT1G16230.1 56.545 191 80 2 1 189 1 190 5.50e-66 202
Msa0409300 AT1G16225.2 47.938 194 96 2 1 192 1 191 5.76e-50 162
Msa0409300 AT1G16225.1 47.647 170 84 2 25 192 1 167 6.92e-40 136
Msa0409300 AT1G16225.3 46.763 139 69 2 1 137 1 136 4.99e-32 114
Msa0409300 AT1G28490.1 25.911 247 154 10 1 222 1 243 3.76e-11 61.6
Msa0409300 AT1G28490.2 29.940 167 100 6 72 222 39 204 7.59e-11 60.1
Msa0409300 AT1G28490.3 29.940 167 100 6 72 222 33 198 7.88e-11 60.1

Find 78 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCATCTGGTTTAATTTC+TGG 0.179304 3_2:-49802566 None:intergenic
ACATGTCAAACTTTGCAAAT+AGG 0.204618 3_2:+49802528 Msa0409300:CDS
GATGCATGACGTTGTGTTTC+TGG 0.219951 3_2:-49802058 None:intergenic
CAAATTTCACCTGCAAATTT+AGG 0.241889 3_2:-49799969 None:intergenic
AAGAAGGAAAATCACAATAT+TGG 0.253542 3_2:+49802087 Msa0409300:CDS
GGTTCTTGTCATATGGCTTC+TGG 0.253840 3_2:+49803712 Msa0409300:CDS
AGAAGGAAAATCACAATATT+GGG 0.265836 3_2:+49802088 Msa0409300:CDS
TTCTCTTCTCACTCAATAAT+AGG 0.275155 3_2:-49804012 None:intergenic
AGATGAGGGCCTTGAGAAAT+TGG 0.280110 3_2:+49802738 Msa0409300:CDS
CATGTCAAACTTTGCAAATA+GGG 0.294997 3_2:+49802529 Msa0409300:CDS
CATAATTCATTTCCTTCATC+TGG 0.315930 3_2:+49802034 Msa0409300:CDS
CAGCTGAATACTCACTTTAC+AGG 0.320411 3_2:-49802151 None:intergenic
TGGGTTTGGTTCTTGTCATA+TGG 0.348542 3_2:+49803705 Msa0409300:CDS
AGTGATTGGTATAGTGGGTT+TGG 0.352039 3_2:+49803691 Msa0409300:CDS
ACAGTTCTGCTCATTGCATC+TGG 0.359258 3_2:-49802578 None:intergenic
ACTTTCTCTGAATTAGGGTT+TGG 0.389473 3_2:-49799939 None:intergenic
ATTAGCAGTGATTGGTATAG+TGG 0.391361 3_2:+49803685 Msa0409300:CDS
TGTTCAAAGTTGAAGCCATT+TGG 0.405777 3_2:-49802508 None:intergenic
GGGATTGCAAGCTATCTAAT+CGG 0.411055 3_2:-49802114 None:intergenic
ATATGATATGATATGTTTCA+AGG 0.426347 3_2:-49803810 None:intergenic
CTCAATACATTCCATGTCAT+TGG 0.429668 3_2:-49803868 None:intergenic
ATGTAGATGTCACAGATTCT+CGG 0.431976 3_2:+49802946 Msa0409300:CDS
TTCTTCAGACTCATGGTTGA+AGG 0.435094 3_2:+49801958 Msa0409300:CDS
TTACAGGGAGCTTTGACAAA+AGG 0.435213 3_2:-49802135 None:intergenic
TACAGGGAGCTTTGACAAAA+GGG 0.439839 3_2:-49802134 None:intergenic
TTGGATAACAATGGACTTGT+TGG 0.440074 3_2:+49802605 Msa0409300:CDS
GAGGTCAAAGGTTAACCAAA+TGG 0.450048 3_2:+49802493 Msa0409300:CDS
ACTCAATAATAGGTGACTTA+AGG 0.462852 3_2:-49804002 None:intergenic
TGTGTTTCTGGTCCAGATGA+AGG 0.467807 3_2:-49802046 None:intergenic
GGAAAAGTTTGCTGAGTTGT+GGG 0.468851 3_2:-49803760 None:intergenic
TTCACCTAATTTCAGGCCAA+TGG 0.473419 3_2:+49801931 Msa0409300:intron
TGGCATCTTCTTCAGACTCA+TGG 0.482083 3_2:+49801951 Msa0409300:CDS
AGGACAACCTTGCAAATTTG+AGG 0.487031 3_2:+49802474 Msa0409300:CDS
CCTTGCAAATTTGAGGTCAA+AGG 0.488877 3_2:+49802481 Msa0409300:CDS
CGACAACAGCGTCACACAAA+CGG 0.493532 3_2:+49799817 Msa0409300:five_prime_UTR
GGGAAAAGTTTGCTGAGTTG+TGG 0.494877 3_2:-49803761 None:intergenic
GCAAATAGGGATAGTTTGCT+CGG 0.495730 3_2:+49802542 Msa0409300:CDS
TTTGGTAATTGAGATGAAAG+AGG 0.518164 3_2:-49799921 None:intergenic
TCGATTGTGCTTCGTATACG+CGG 0.529291 3_2:-49799731 None:intergenic
GGATTGCAAGCTATCTAATC+GGG 0.534842 3_2:-49802113 None:intergenic
GTCATGCATCTGCTATAAGA+AGG 0.539643 3_2:+49802071 Msa0409300:CDS
TTTGTACTTTGCCAATGACA+TGG 0.544189 3_2:+49803857 Msa0409300:three_prime_UTR
ACAGAGAGTGCAGAAGAACT+TGG 0.545697 3_2:+49803613 Msa0409300:intron
TTAGCAGTGATTGGTATAGT+GGG 0.549125 3_2:+49803686 Msa0409300:CDS
TTTACGAAATGTGAATGAAA+CGG 0.550120 3_2:-49799794 None:intergenic
CAAATAGGGATAGTTTGCTC+GGG 0.550659 3_2:+49802543 Msa0409300:CDS
ATGTCACAGATTCTCGGCTG+AGG 0.559797 3_2:+49802952 Msa0409300:CDS
ATGGACTTGTTGGTCTGCAA+CGG 0.564781 3_2:+49802615 Msa0409300:CDS
AATGATAAATAGGTCTGAGA+AGG 0.567578 3_2:+49802436 Msa0409300:intron
CGGTCTCCTCCAATTTCTCA+AGG 0.568939 3_2:-49802747 None:intergenic
GTCACACAAACGGTGCCGCT+CGG 0.570161 3_2:+49799827 Msa0409300:five_prime_UTR
TGCATGCTATTAGCAGTGAT+TGG 0.573326 3_2:+49803677 Msa0409300:CDS
CCTTTGACCTCAAATTTGCA+AGG 0.577028 3_2:-49802481 None:intergenic
GAATGTATTGAGGTCTTGAA+AGG 0.580785 3_2:+49803879 Msa0409300:three_prime_UTR
TTTCTAACAGAGCAAGATGA+GGG 0.582199 3_2:+49802724 Msa0409300:intron
CTGCAACGGCAAGTTATGAA+AGG 0.592264 3_2:+49802629 Msa0409300:CDS
TGAGGGCCTTGAGAAATTGG+AGG 0.594430 3_2:+49802741 Msa0409300:CDS
AAGTACAAAACATATTGCGT+TGG 0.595524 3_2:+49802774 Msa0409300:CDS
TGTCACAGATTCTCGGCTGA+GGG 0.596979 3_2:+49802953 Msa0409300:CDS
GATGCAATGAGCAGAACTGT+TGG 0.597248 3_2:+49802581 Msa0409300:CDS
TTAAACAAACGTACTAAGGG+TGG 0.598231 3_2:+49803641 Msa0409300:CDS
CATTCAGAAACATAAACACA+AGG 0.604633 3_2:-49803783 None:intergenic
AATGAGCAGAACTGTTGGCT+TGG 0.609524 3_2:+49802586 Msa0409300:CDS
GAAGGAAAATCACAATATTG+GGG 0.609732 3_2:+49802089 Msa0409300:CDS
CAATGACATGGAATGTATTG+AGG 0.609822 3_2:+49803869 Msa0409300:three_prime_UTR
AGCTGAATACTCACTTTACA+GGG 0.612522 3_2:-49802150 None:intergenic
GAGTCTGAAGAAGATGCCAT+TGG 0.624414 3_2:-49801947 None:intergenic
ATTCAGAAACATAAACACAA+GGG 0.630462 3_2:-49803782 None:intergenic
TTCAGAAACATAAACACAAG+GGG 0.631880 3_2:-49803781 None:intergenic
CGATTGTGCTTCGTATACGC+GGG 0.633504 3_2:-49799730 None:intergenic
AACGGCGCGGTAGCACCGAG+CGG 0.634213 3_2:-49799842 None:intergenic
ACTGTTGGCTTGGATAACAA+TGG 0.640180 3_2:+49802596 Msa0409300:CDS
ATAGGAAGAAAGTAGCGTAA+CGG 0.666167 3_2:-49799860 None:intergenic
GAAGGAGATGAATCGTCGCA+AGG 0.666742 3_2:+49802454 Msa0409300:CDS
AAAGAACAATCGAAGAACCT+CGG 0.669452 3_2:-49803837 None:intergenic
AAACTTGCTGATGATATCAG+TGG 0.699595 3_2:+49801998 Msa0409300:CDS
TATCATATCATATATAACCG+AGG 0.706995 3_2:+49803820 Msa0409300:three_prime_UTR
AAGAAAGTAGCGTAACGGCG+CGG 0.726925 3_2:-49799855 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTATAATTATATGAAAA+TGG - chr3_2:49802305-49802324 None:intergenic 10.0%
!!! TTTTTTTTAGTTTTGAATTC+TGG + chr3_2:49800035-49800054 Msa0409300:intron 15.0%
!! AAATCAATGATGTTAAATAA+CGG - chr3_2:49800471-49800490 None:intergenic 15.0%
!! AAATTATTAGATATAGAGAT+AGG + chr3_2:49800656-49800675 Msa0409300:intron 15.0%
!! TATAAAAATAGCTTATACAT+AGG - chr3_2:49800781-49800800 None:intergenic 15.0%
!!! TTCTATTTTTAAATGTCTTA+TGG + chr3_2:49801422-49801441 Msa0409300:intron 15.0%
!! ATAATTATATGAAAATGGTA+AGG - chr3_2:49802300-49802319 None:intergenic 15.0%
!!! AATATGTTTTGTACTTAATA+CGG - chr3_2:49802770-49802789 None:intergenic 15.0%
!! TGGAAATATAATCATTAATT+TGG + chr3_2:49803225-49803244 Msa0409300:intron 15.0%
!! GGAAATATAATCATTAATTT+GGG + chr3_2:49803226-49803245 Msa0409300:intron 15.0%
!! TATAAATTATTGAATATCTG+TGG + chr3_2:49803387-49803406 Msa0409300:intron 15.0%
!!! AAGATAAAATTGTCATTTTT+CGG + chr3_2:49803421-49803440 Msa0409300:intron 15.0%
!! AAAAAACTTTCTCTGAATTA+GGG - chr3_2:49799947-49799966 None:intergenic 20.0%
!!! AAAGGTGGTTAATTTTTTTT+TGG + chr3_2:49800176-49800195 Msa0409300:intron 20.0%
!!! AAGGTGGTTAATTTTTTTTT+GGG + chr3_2:49800177-49800196 Msa0409300:intron 20.0%
!! TTTCCAAAAAAAAAGTAAAC+CGG - chr3_2:49800639-49800658 None:intergenic 20.0%
!! TACAAATGTTTATCTAAACA+GGG - chr3_2:49800715-49800734 None:intergenic 20.0%
!! ATACAAATGTTTATCTAAAC+AGG - chr3_2:49800716-49800735 None:intergenic 20.0%
!! TAAAGCTTGAAATAGATTAA+AGG - chr3_2:49800970-49800989 None:intergenic 20.0%
!! CATATAAATATTTGAGAAAG+CGG + chr3_2:49801018-49801037 Msa0409300:intron 20.0%
!! TTAAACATAATTGATAGAGA+AGG + chr3_2:49801047-49801066 Msa0409300:intron 20.0%
!!! TATCTAGATTGTTGATTATA+TGG + chr3_2:49801783-49801802 Msa0409300:intron 20.0%
!!! TTATTCTGAAAAATGTTTTG+TGG + chr3_2:49802256-49802275 Msa0409300:intron 20.0%
!! TTCTTTGTCAAATGATAAAT+AGG + chr3_2:49802426-49802445 Msa0409300:intron 20.0%
!! TTAGCAAAGAAAATTAACAT+AGG - chr3_2:49802850-49802869 None:intergenic 20.0%
!!! TGAATCTTTTATTTTCTTCT+AGG + chr3_2:49802908-49802927 Msa0409300:intron 20.0%
!! CAAAATACTTATCAGAATTA+AGG - chr3_2:49803122-49803141 None:intergenic 20.0%
!!! AAATAGATGTACCATATTTT+TGG + chr3_2:49803186-49803205 Msa0409300:intron 20.0%
!! AAAAAAACTTAAAAGGGAAA+AGG - chr3_2:49803516-49803535 None:intergenic 20.0%
!!! AATTTTAAACAAACGTACTA+AGG + chr3_2:49803637-49803656 Msa0409300:CDS 20.0%
!!! ATTTTAAACAAACGTACTAA+GGG + chr3_2:49803638-49803657 Msa0409300:CDS 20.0%
!! ATATGATATGATATGTTTCA+AGG - chr3_2:49803813-49803832 None:intergenic 20.0%
! TTTACGAAATGTGAATGAAA+CGG - chr3_2:49799797-49799816 None:intergenic 25.0%
! GAAAAAACTTTCTCTGAATT+AGG - chr3_2:49799948-49799967 None:intergenic 25.0%
!!! ACGTGTTTTTTTTTTTTGTG+TGG + chr3_2:49800082-49800101 Msa0409300:intron 25.0%
!!! TGGTTGATTTTGACTTTTTT+GGG + chr3_2:49800102-49800121 Msa0409300:intron 25.0%
!!! AATAGATGAATTTGTTGTTG+AGG + chr3_2:49800278-49800297 Msa0409300:intron 25.0%
! CTGTACTAAATAGTTTATTG+CGG + chr3_2:49800397-49800416 Msa0409300:intron 25.0%
!!! ATCATTGATTTTGCTTTAGA+AGG + chr3_2:49800480-49800499 Msa0409300:intron 25.0%
!!! TATCCGGTTTACTTTTTTTT+TGG + chr3_2:49800633-49800652 Msa0409300:intron 25.0%
!!! GCTATTTTCATAAGTTATCT+TGG + chr3_2:49800837-49800856 Msa0409300:intron 25.0%
!!! ACGTATTTTAGTTTATCTAC+TGG - chr3_2:49800934-49800953 None:intergenic 25.0%
!! ATTTCAAGCTTTAATAGCAA+TGG + chr3_2:49800977-49800996 Msa0409300:intron 25.0%
!! TAGTTTTTCTCTCACTTAAT+AGG + chr3_2:49801270-49801289 Msa0409300:intron 25.0%
! AACTTAGTAAGTAAAACACA+TGG - chr3_2:49801393-49801412 None:intergenic 25.0%
! AAAAACTTTAAGTACTTTCC+AGG - chr3_2:49801758-49801777 None:intergenic 25.0%
!!! TGGAAAGTACTTAAAGTTTT+TGG + chr3_2:49801757-49801776 Msa0409300:intron 25.0%
!!! GGAAAGTACTTAAAGTTTTT+GGG + chr3_2:49801758-49801777 Msa0409300:intron 25.0%
! AAAAAGAAAGCAAAAATGAG+AGG - chr3_2:49801913-49801932 None:intergenic 25.0%
!!! TTTCTTTTTCACCTAATTTC+AGG + chr3_2:49801924-49801943 Msa0409300:intron 25.0%
! AAGAAGGAAAATCACAATAT+TGG + chr3_2:49802087-49802106 Msa0409300:CDS 25.0%
! AGAAGGAAAATCACAATATT+GGG + chr3_2:49802088-49802107 Msa0409300:CDS 25.0%
!!! AAAAAGCATCATATTACTAC+AGG - chr3_2:49802238-49802257 None:intergenic 25.0%
!! GAAATACATAATTTGTGCTT+TGG + chr3_2:49802680-49802699 Msa0409300:intron 25.0%
! CAAAGAAAATTAACATAGGA+TGG - chr3_2:49802846-49802865 None:intergenic 25.0%
!! AAGTATTTTGTCTCAGAATT+AGG + chr3_2:49803132-49803151 Msa0409300:intron 25.0%
!! ATCTATTTGAAATGTCAGAT+TGG - chr3_2:49803174-49803193 None:intergenic 25.0%
!!! ATGTTGTTACTTTTTGTATG+AGG + chr3_2:49803311-49803330 Msa0409300:intron 25.0%
! GTAAACTTACATAGTTAACT+AGG + chr3_2:49803358-49803377 Msa0409300:intron 25.0%
! TATCACAAAAGAAACAGAAA+AGG - chr3_2:49803593-49803612 None:intergenic 25.0%
! ATTCAGAAACATAAACACAA+GGG - chr3_2:49803785-49803804 None:intergenic 25.0%
! TATCATATCATATATAACCG+AGG + chr3_2:49803820-49803839 Msa0409300:three_prime_UTR 25.0%
! TTTGGTAATTGAGATGAAAG+AGG - chr3_2:49799924-49799943 None:intergenic 30.0%
CAAATTTCACCTGCAAATTT+AGG - chr3_2:49799972-49799991 None:intergenic 30.0%
! TGAATTCTGGATTGTGTTTT+TGG + chr3_2:49800048-49800067 Msa0409300:intron 30.0%
!!! GTGGTTGATTTTGACTTTTT+TGG + chr3_2:49800101-49800120 Msa0409300:intron 30.0%
!! GTGTACGATTTTGATGTTAA+AGG + chr3_2:49800158-49800177 Msa0409300:intron 30.0%
!! TACGATTTTGATGTTAAAGG+TGG + chr3_2:49800161-49800180 Msa0409300:intron 30.0%
!!! TTTTTTTTGGGATTTCGTGA+TGG + chr3_2:49800189-49800208 Msa0409300:intron 30.0%
!!! TTTTTTTGGGATTTCGTGAT+GGG + chr3_2:49800190-49800209 Msa0409300:intron 30.0%
!!! GGCATTTAGTTTGGTTTTTT+AGG + chr3_2:49800299-49800318 Msa0409300:intron 30.0%
! CAGTGTGTCAAAATTTTCTA+CGG - chr3_2:49800380-49800399 None:intergenic 30.0%
TATTCATGAGGTTTATGTGA+TGG + chr3_2:49800596-49800615 Msa0409300:intron 30.0%
! ATAGAGATAGGAATTTTCGA+AGG + chr3_2:49800668-49800687 Msa0409300:intron 30.0%
AAAATCTCATGCTATTCACA+TGG - chr3_2:49800746-49800765 None:intergenic 30.0%
! AAATAGATTAAAGGCATGTC+TGG - chr3_2:49800961-49800980 None:intergenic 30.0%
ATTCAAAGACACTCTAACAA+AGG - chr3_2:49801091-49801110 None:intergenic 30.0%
! GTCTAAAATTGACTCAAAGA+AGG - chr3_2:49801130-49801149 None:intergenic 30.0%
! TCAATTTTAGACACGTAATC+AGG + chr3_2:49801138-49801157 Msa0409300:intron 30.0%
GTAATCAGGTAAAGTTTCTA+GGG + chr3_2:49801152-49801171 Msa0409300:intron 30.0%
GAGAGAAAAACTACAAAGTT+AGG - chr3_2:49801263-49801282 None:intergenic 30.0%
!!! CTTTTTTTCAAGATACTAGC+TGG + chr3_2:49801367-49801386 Msa0409300:intron 30.0%
AAGTTGGATACAATGTATGT+TGG + chr3_2:49801472-49801491 Msa0409300:intron 30.0%
AACATGAAATGAATACTACC+TGG - chr3_2:49801704-49801723 None:intergenic 30.0%
TTCATTTCATGTTAATCACG+TGG + chr3_2:49801711-49801730 Msa0409300:intron 30.0%
!! TCTTTCTCTTGTTTCAGTTT+TGG + chr3_2:49801808-49801827 Msa0409300:intron 30.0%
CATAATTCATTTCCTTCATC+TGG + chr3_2:49802034-49802053 Msa0409300:CDS 30.0%
GAAGGAAAATCACAATATTG+GGG + chr3_2:49802089-49802108 Msa0409300:CDS 30.0%
TTGTTTACCCTGATTAAGAA+AGG + chr3_2:49802174-49802193 Msa0409300:intron 30.0%
AAATGGTAAGGAGATAGATA+TGG - chr3_2:49802288-49802307 None:intergenic 30.0%
AATGATAAATAGGTCTGAGA+AGG + chr3_2:49802436-49802455 Msa0409300:intron 30.0%
ACATGTCAAACTTTGCAAAT+AGG + chr3_2:49802528-49802547 Msa0409300:CDS 30.0%
CATGTCAAACTTTGCAAATA+GGG + chr3_2:49802529-49802548 Msa0409300:CDS 30.0%
! ATTGCATCTGGTTTAATTTC+TGG - chr3_2:49802569-49802588 None:intergenic 30.0%
!! TGTGCTTTGGATATTGATTT+CGG + chr3_2:49802693-49802712 Msa0409300:intron 30.0%
AAGTACAAAACATATTGCGT+TGG + chr3_2:49802774-49802793 Msa0409300:CDS 30.0%
!!! TATTTTCTTCTAGGATGACT+TGG + chr3_2:49802917-49802936 Msa0409300:intron 30.0%
TATATGCCTAAAGAAAGTTG+TGG - chr3_2:49802990-49803009 None:intergenic 30.0%
CGTACATCAAACCAAAAATA+TGG - chr3_2:49803200-49803219 None:intergenic 30.0%
!!! AAAATTGTCATTTTTCGGCT+AGG + chr3_2:49803426-49803445 Msa0409300:intron 30.0%
TTCAGAAACATAAACACAAG+GGG - chr3_2:49803784-49803803 None:intergenic 30.0%
CATTCAGAAACATAAACACA+AGG - chr3_2:49803786-49803805 None:intergenic 30.0%
ACTCAATAATAGGTGACTTA+AGG - chr3_2:49804005-49804024 None:intergenic 30.0%
TTCTCTTCTCACTCAATAAT+AGG - chr3_2:49804015-49804034 None:intergenic 30.0%
ATAGGAAGAAAGTAGCGTAA+CGG - chr3_2:49799863-49799882 None:intergenic 35.0%
!!! ATACGATGTCGTTTTAGGAT+AGG - chr3_2:49799881-49799900 None:intergenic 35.0%
ACTTTCTCTGAATTAGGGTT+TGG - chr3_2:49799942-49799961 None:intergenic 35.0%
!!! GTTTTTTCGCCTAAATTTGC+AGG + chr3_2:49799960-49799979 Msa0409300:five_prime_UTR 35.0%
AAAACGAACAGATCGTAAAG+TGG - chr3_2:49799998-49800017 None:intergenic 35.0%
!! TCATTGTTTCTGTGATCATG+AGG + chr3_2:49800232-49800251 Msa0409300:intron 35.0%
! TGTTGTTGAGGCATTTAGTT+TGG + chr3_2:49800290-49800309 Msa0409300:intron 35.0%
!!! GTTTGGTTTTTTAGGTGAAG+AGG + chr3_2:49800307-49800326 Msa0409300:intron 35.0%
AATAGTTTATTGCGGAACAG+TGG + chr3_2:49800405-49800424 Msa0409300:intron 35.0%
ATGTTAAATAACGGCTAGAG+AGG - chr3_2:49800462-49800481 None:intergenic 35.0%
!!! GATTTTGCTTTAGAAGGATG+TGG + chr3_2:49800486-49800505 Msa0409300:intron 35.0%
TTGACTATCAACCATTGAAC+CGG - chr3_2:49800552-49800571 None:intergenic 35.0%
!! GTTCAATGGTTGATAGTCAA+GGG + chr3_2:49800552-49800571 Msa0409300:intron 35.0%
!! AGGAATTTTCGAAGGAGTAT+AGG + chr3_2:49800676-49800695 Msa0409300:intron 35.0%
AAGTACTTGTGTGACTGTTT+GGG - chr3_2:49800908-49800927 None:intergenic 35.0%
TAAGTACTTGTGTGACTGTT+TGG - chr3_2:49800909-49800928 None:intergenic 35.0%
CTTTAATAGCAATGGTGTGT+TGG + chr3_2:49800985-49801004 Msa0409300:intron 35.0%
CATAATTGATAGAGAAGGCT+TGG + chr3_2:49801052-49801071 Msa0409300:intron 35.0%
CGTAATCAGGTAAAGTTTCT+AGG + chr3_2:49801151-49801170 Msa0409300:intron 35.0%
! AGGTAAAGTTTCTAGGGATT+TGG + chr3_2:49801158-49801177 Msa0409300:intron 35.0%
CTGTTAGTTAGCTACATAGA+AGG - chr3_2:49801231-49801250 None:intergenic 35.0%
ACTACAAAGTTAGGAAGACA+TGG - chr3_2:49801254-49801273 None:intergenic 35.0%
TTGGATACAATGTATGTTGG+TGG + chr3_2:49801475-49801494 Msa0409300:intron 35.0%
ACACTGTAACATTGACACAA+TGG - chr3_2:49801536-49801555 None:intergenic 35.0%
! TTTTATGAGTTTCTCTAGCC+AGG + chr3_2:49801683-49801702 Msa0409300:intron 35.0%
TTCATGTTAATCACGTGGAA+TGG + chr3_2:49801716-49801735 Msa0409300:intron 35.0%
!!! GGAAAAGCTCTTTATTTTCC+TGG + chr3_2:49801737-49801756 Msa0409300:intron 35.0%
!! AAACTTGCTGATGATATCAG+TGG + chr3_2:49801998-49802017 Msa0409300:CDS 35.0%
AGCTGAATACTCACTTTACA+GGG - chr3_2:49802153-49802172 None:intergenic 35.0%
TTACCCTGATTAAGAAAGGA+TGG + chr3_2:49802178-49802197 Msa0409300:intron 35.0%
TGTTCAAAGTTGAAGCCATT+TGG - chr3_2:49802511-49802530 None:intergenic 35.0%
! TTGGATAACAATGGACTTGT+TGG + chr3_2:49802605-49802624 Msa0409300:CDS 35.0%
! TTTTCTAACAGAGCAAGATG+AGG + chr3_2:49802723-49802742 Msa0409300:intron 35.0%
TTTCTAACAGAGCAAGATGA+GGG + chr3_2:49802724-49802743 Msa0409300:intron 35.0%
ATGTAGATGTCACAGATTCT+CGG + chr3_2:49802946-49802965 Msa0409300:CDS 35.0%
CTCTTACCACAACTTTCTTT+AGG + chr3_2:49802981-49803000 Msa0409300:intron 35.0%
! TTGGTTTGATGTACGTTGTT+TGG + chr3_2:49803205-49803224 Msa0409300:intron 35.0%
TTAAACAAACGTACTAAGGG+TGG + chr3_2:49803641-49803660 Msa0409300:CDS 35.0%
ATTAGCAGTGATTGGTATAG+TGG + chr3_2:49803685-49803704 Msa0409300:CDS 35.0%
TTAGCAGTGATTGGTATAGT+GGG + chr3_2:49803686-49803705 Msa0409300:CDS 35.0%
AAAGAACAATCGAAGAACCT+CGG - chr3_2:49803840-49803859 None:intergenic 35.0%
TTTGTACTTTGCCAATGACA+TGG + chr3_2:49803857-49803876 Msa0409300:three_prime_UTR 35.0%
CTCAATACATTCCATGTCAT+TGG - chr3_2:49803871-49803890 None:intergenic 35.0%
CAATGACATGGAATGTATTG+AGG + chr3_2:49803869-49803888 Msa0409300:three_prime_UTR 35.0%
GAATGTATTGAGGTCTTGAA+AGG + chr3_2:49803879-49803898 Msa0409300:three_prime_UTR 35.0%
!!! GATCGATACGATGTCGTTTT+AGG - chr3_2:49799886-49799905 None:intergenic 40.0%
TTTCTGTGATCATGAGGTGA+TGG + chr3_2:49800238-49800257 Msa0409300:intron 40.0%
! TTGATGGGAGTGGTGTTAAA+TGG + chr3_2:49800522-49800541 Msa0409300:intron 40.0%
! AGTGGTGTTAAATGGAAACC+CGG + chr3_2:49800530-49800549 Msa0409300:intron 40.0%
TAAATGGAAACCCGGTTCAA+TGG + chr3_2:49800538-49800557 Msa0409300:intron 40.0%
TGACTATCAACCATTGAACC+GGG - chr3_2:49800551-49800570 None:intergenic 40.0%
!! GGTTCAATGGTTGATAGTCA+AGG + chr3_2:49800551-49800570 Msa0409300:intron 40.0%
!! AATGGTTGATAGTCAAGGGT+GGG + chr3_2:49800556-49800575 Msa0409300:intron 40.0%
! GGAGTATAGGAGATTTTCGA+AGG + chr3_2:49800689-49800708 Msa0409300:intron 40.0%
TGACTGTTTGGGAGAGTTTA+TGG - chr3_2:49800897-49800916 None:intergenic 40.0%
!!! TTCTAGGGATTTGGCTCTTT+TGG + chr3_2:49801167-49801186 Msa0409300:intron 40.0%
TCTGACCAAGTAGAAACCAA+TGG - chr3_2:49801196-49801215 None:intergenic 40.0%
AAAACCCTTCTCAGGCTATT+TGG + chr3_2:49801308-49801327 Msa0409300:intron 40.0%
TGATCCAAATAGCCTGAGAA+GGG - chr3_2:49801315-49801334 None:intergenic 40.0%
TTGATCCAAATAGCCTGAGA+AGG - chr3_2:49801316-49801335 None:intergenic 40.0%
TGTCTTATGGAACTCAGTTG+CGG + chr3_2:49801435-49801454 Msa0409300:intron 40.0%
GGTCAAAGCTGCAATTAAGT+TGG + chr3_2:49801456-49801475 Msa0409300:intron 40.0%
! GGTTGAGTCTAGCAAGTTTT+TGG + chr3_2:49801496-49801515 Msa0409300:intron 40.0%
TTGATTACACGCTTGTATGC+CGG + chr3_2:49801581-49801600 Msa0409300:intron 40.0%
TTCACCTAATTTCAGGCCAA+TGG + chr3_2:49801931-49801950 Msa0409300:intron 40.0%
TTCTTCAGACTCATGGTTGA+AGG + chr3_2:49801958-49801977 Msa0409300:CDS 40.0%
GTCATGCATCTGCTATAAGA+AGG + chr3_2:49802071-49802090 Msa0409300:CDS 40.0%
GGATTGCAAGCTATCTAATC+GGG - chr3_2:49802116-49802135 None:intergenic 40.0%
GGGATTGCAAGCTATCTAAT+CGG - chr3_2:49802117-49802136 None:intergenic 40.0%
! TACAGGGAGCTTTGACAAAA+GGG - chr3_2:49802137-49802156 None:intergenic 40.0%
! TTACAGGGAGCTTTGACAAA+AGG - chr3_2:49802138-49802157 None:intergenic 40.0%
CAGCTGAATACTCACTTTAC+AGG - chr3_2:49802154-49802173 None:intergenic 40.0%
GCACCATCCTTTCTTAATCA+GGG - chr3_2:49802184-49802203 None:intergenic 40.0%
AGCACCATCCTTTCTTAATC+AGG - chr3_2:49802185-49802204 None:intergenic 40.0%
!! ATGGTGCTATTACAGCAATG+AGG + chr3_2:49802197-49802216 Msa0409300:intron 40.0%
TACTACAGGACATTGAGTTC+AGG - chr3_2:49802224-49802243 None:intergenic 40.0%
! TGTCTTCTTTTGAGCTGCAA+AGG + chr3_2:49802379-49802398 Msa0409300:intron 40.0%
AGGACAACCTTGCAAATTTG+AGG + chr3_2:49802474-49802493 Msa0409300:CDS 40.0%
CCTTTGACCTCAAATTTGCA+AGG - chr3_2:49802484-49802503 None:intergenic 40.0%
! CCTTGCAAATTTGAGGTCAA+AGG + chr3_2:49802481-49802500 Msa0409300:CDS 40.0%
GAGGTCAAAGGTTAACCAAA+TGG + chr3_2:49802493-49802512 Msa0409300:CDS 40.0%
!! GCAAATAGGGATAGTTTGCT+CGG + chr3_2:49802542-49802561 Msa0409300:CDS 40.0%
!! CAAATAGGGATAGTTTGCTC+GGG + chr3_2:49802543-49802562 Msa0409300:CDS 40.0%
!! ACTGTTGGCTTGGATAACAA+TGG + chr3_2:49802596-49802615 Msa0409300:CDS 40.0%
!! GCTTTGGATATTGATTTCGG+AGG + chr3_2:49802696-49802715 Msa0409300:intron 40.0%
TGTCAGATTGGTGAGTATGT+GGG - chr3_2:49803162-49803181 None:intergenic 40.0%
ATGTCAGATTGGTGAGTATG+TGG - chr3_2:49803163-49803182 None:intergenic 40.0%
!!! ATTGTCATTTTTCGGCTAGG+TGG + chr3_2:49803429-49803448 Msa0409300:intron 40.0%
!!! TTGTCATTTTTCGGCTAGGT+GGG + chr3_2:49803430-49803449 Msa0409300:intron 40.0%
TGCATGCTATTAGCAGTGAT+TGG + chr3_2:49803677-49803696 Msa0409300:CDS 40.0%
!! AGTGATTGGTATAGTGGGTT+TGG + chr3_2:49803691-49803710 Msa0409300:CDS 40.0%
!! TGGGTTTGGTTCTTGTCATA+TGG + chr3_2:49803705-49803724 Msa0409300:CDS 40.0%
!! GGAAAAGTTTGCTGAGTTGT+GGG - chr3_2:49803763-49803782 None:intergenic 40.0%
TCGATTGTGCTTCGTATACG+CGG - chr3_2:49799734-49799753 None:intergenic 45.0%
!! TTTGGGATTTCGTGATGGGT+TGG + chr3_2:49800194-49800213 Msa0409300:intron 45.0%
! CTTTAGAAGGATGTGGATGC+CGG + chr3_2:49800493-49800512 Msa0409300:intron 45.0%
!! CAATGGTTGATAGTCAAGGG+TGG + chr3_2:49800555-49800574 Msa0409300:intron 45.0%
GGATTGCTTCTGCTTCTATC+CGG + chr3_2:49800617-49800636 Msa0409300:intron 45.0%
AACAGCGAAAAACCCTTCTC+AGG + chr3_2:49801300-49801319 Msa0409300:intron 45.0%
! GATGCCATTGGCCTGAAATT+AGG - chr3_2:49801938-49801957 None:intergenic 45.0%
GAGTCTGAAGAAGATGCCAT+TGG - chr3_2:49801950-49801969 None:intergenic 45.0%
TGGCATCTTCTTCAGACTCA+TGG + chr3_2:49801951-49801970 Msa0409300:CDS 45.0%
!! TGTGTTTCTGGTCCAGATGA+AGG - chr3_2:49802049-49802068 None:intergenic 45.0%
GATGCATGACGTTGTGTTTC+TGG - chr3_2:49802061-49802080 None:intergenic 45.0%
ACAGTTCTGCTCATTGCATC+TGG - chr3_2:49802581-49802600 None:intergenic 45.0%
GATGCAATGAGCAGAACTGT+TGG + chr3_2:49802581-49802600 Msa0409300:CDS 45.0%
! AATGAGCAGAACTGTTGGCT+TGG + chr3_2:49802586-49802605 Msa0409300:CDS 45.0%
!! ATGGACTTGTTGGTCTGCAA+CGG + chr3_2:49802615-49802634 Msa0409300:CDS 45.0%
CTGCAACGGCAAGTTATGAA+AGG + chr3_2:49802629-49802648 Msa0409300:CDS 45.0%
AGATGAGGGCCTTGAGAAAT+TGG + chr3_2:49802738-49802757 Msa0409300:CDS 45.0%
GTTGTACGCCATGTCATTCA+TGG + chr3_2:49803268-49803287 Msa0409300:intron 45.0%
GCCATGTCATTCATGGATCT+GGG + chr3_2:49803275-49803294 Msa0409300:intron 45.0%
CCATGTCATTCATGGATCTG+GGG + chr3_2:49803276-49803295 Msa0409300:intron 45.0%
CATGTCATTCATGGATCTGG+GGG + chr3_2:49803277-49803296 Msa0409300:intron 45.0%
ATGTCATTCATGGATCTGGG+GGG + chr3_2:49803278-49803297 Msa0409300:intron 45.0%
!!! TGTCATTTTTCGGCTAGGTG+GGG + chr3_2:49803431-49803450 Msa0409300:intron 45.0%
! ACAGAGAGTGCAGAAGAACT+TGG + chr3_2:49803613-49803632 Msa0409300:intron 45.0%
GGTTCTTGTCATATGGCTTC+TGG + chr3_2:49803712-49803731 Msa0409300:CDS 45.0%
!! GGGAAAAGTTTGCTGAGTTG+TGG - chr3_2:49803764-49803783 None:intergenic 45.0%
!! TAAAAAAAAAAAACTTAAAA+GGG - chr3_2:49803522-49803541 None:intergenic 5.0%
!! TTAAAAAAAAAAAACTTAAA+AGG - chr3_2:49803523-49803542 None:intergenic 5.0%
CGATTGTGCTTCGTATACGC+GGG - chr3_2:49799733-49799752 None:intergenic 50.0%
CGACAACAGCGTCACACAAA+CGG + chr3_2:49799817-49799836 Msa0409300:five_prime_UTR 50.0%
AAGAAAGTAGCGTAACGGCG+CGG - chr3_2:49799858-49799877 None:intergenic 50.0%
! CTGTGATCATGAGGTGATGG+TGG + chr3_2:49800241-49800260 Msa0409300:intron 50.0%
!! TGATCATGAGGTGATGGTGG+TGG + chr3_2:49800244-49800263 Msa0409300:intron 50.0%
!! GATCATGAGGTGATGGTGGT+GGG + chr3_2:49800245-49800264 Msa0409300:intron 50.0%
GGAGGTGGCAGTTATTCATG+AGG + chr3_2:49800584-49800603 Msa0409300:intron 50.0%
!! TTGGCTCTTTTGGCAGCCAT+TGG + chr3_2:49801177-49801196 Msa0409300:intron 50.0%
!! GGCAGCCATTGGTTTCTACT+TGG + chr3_2:49801188-49801207 Msa0409300:intron 50.0%
ATTACACGCTTGTATGCCGG+TGG + chr3_2:49801584-49801603 Msa0409300:intron 50.0%
TTACACGCTTGTATGCCGGT+GGG + chr3_2:49801585-49801604 Msa0409300:intron 50.0%
!! GCTGTTTTGAGCAGCTGAGT+AGG + chr3_2:49801613-49801632 Msa0409300:intron 50.0%
GAAGGAGATGAATCGTCGCA+AGG + chr3_2:49802454-49802473 Msa0409300:CDS 50.0%
TGAGGGCCTTGAGAAATTGG+AGG + chr3_2:49802741-49802760 Msa0409300:CDS 50.0%
CGGTCTCCTCCAATTTCTCA+AGG - chr3_2:49802750-49802769 None:intergenic 50.0%
ATGTCACAGATTCTCGGCTG+AGG + chr3_2:49802952-49802971 Msa0409300:CDS 50.0%
TGTCACAGATTCTCGGCTGA+GGG + chr3_2:49802953-49802972 Msa0409300:CDS 50.0%
CGCCATGTCATTCATGGATC+TGG + chr3_2:49803274-49803293 Msa0409300:intron 50.0%
CCCCAGATCCATGAATGACA+TGG - chr3_2:49803279-49803298 None:intergenic 50.0%
TTCATGGATCTGGGGGGATT+TGG + chr3_2:49803284-49803303 Msa0409300:intron 50.0%
TCATGGATCTGGGGGGATTT+GGG + chr3_2:49803285-49803304 Msa0409300:intron 50.0%
!!! GTCATTTTTCGGCTAGGTGG+GGG + chr3_2:49803432-49803451 Msa0409300:intron 50.0%
!! GGTTGATAGTCAAGGGTGGG+AGG + chr3_2:49800559-49800578 Msa0409300:intron 55.0%
TGATAGTCAAGGGTGGGAGG+TGG + chr3_2:49800562-49800581 Msa0409300:intron 55.0%
GATAGTCAAGGGTGGGAGGT+GGG + chr3_2:49800563-49800582 Msa0409300:intron 55.0%
GATAGAGAAGGCTTGGCTGC+TGG + chr3_2:49801059-49801078 Msa0409300:intron 55.0%
TACACGCTTGTATGCCGGTG+GGG + chr3_2:49801586-49801605 Msa0409300:intron 55.0%
TCAAAACAGCAACCCCCCAC+CGG - chr3_2:49801603-49801622 None:intergenic 55.0%
GCTGAGTAGGCTGCAATCTC+TGG + chr3_2:49801626-49801645 Msa0409300:intron 55.0%
!! GTCACACAAACGGTGCCGCT+CGG + chr3_2:49799827-49799846 Msa0409300:five_prime_UTR 60.0%
TGGATGCCGGCGTCTGTTGA+TGG + chr3_2:49800506-49800525 Msa0409300:intron 60.0%
GGATGCCGGCGTCTGTTGAT+GGG + chr3_2:49800507-49800526 Msa0409300:intron 60.0%
CCACTCCCATCAACAGACGC+CGG - chr3_2:49800515-49800534 None:intergenic 60.0%
ACACGCTTGTATGCCGGTGG+GGG + chr3_2:49801587-49801606 Msa0409300:intron 60.0%
TTTCGGCTAGGTGGGGGTGA+TGG + chr3_2:49803438-49803457 Msa0409300:intron 60.0%
TTCGGCTAGGTGGGGGTGAT+GGG + chr3_2:49803439-49803458 Msa0409300:intron 60.0%
! CCGGCGTCTGTTGATGGGAG+TGG + chr3_2:49800512-49800531 Msa0409300:intron 65.0%
AGTCAAGGGTGGGAGGTGGG+AGG + chr3_2:49800566-49800585 Msa0409300:intron 65.0%
CACGCTTGTATGCCGGTGGG+GGG + chr3_2:49801588-49801607 Msa0409300:intron 65.0%
! AACGGCGCGGTAGCACCGAG+CGG - chr3_2:49799845-49799864 None:intergenic 70.0%
CAAGGGTGGGAGGTGGGAGG+TGG + chr3_2:49800569-49800588 Msa0409300:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 49799716 49804085 49799716 ID=Msa0409300;Name=Msa0409300
chr3_2 mRNA 49799716 49804085 49799716 ID=Msa0409300-mRNA-1;Parent=Msa0409300;Name=Msa0409300-mRNA-1;_AED=0.03;_eAED=0.03;_QI=270|1|1|1|0.8|0.66|6|337|229
chr3_2 exon 49799716 49799981 49799716 ID=Msa0409300-mRNA-1:exon:9783;Parent=Msa0409300-mRNA-1
chr3_2 exon 49801946 49802158 49801946 ID=Msa0409300-mRNA-1:exon:9784;Parent=Msa0409300-mRNA-1
chr3_2 exon 49802448 49802650 49802448 ID=Msa0409300-mRNA-1:exon:9785;Parent=Msa0409300-mRNA-1
chr3_2 exon 49802734 49802834 49802734 ID=Msa0409300-mRNA-1:exon:9786;Parent=Msa0409300-mRNA-1
chr3_2 exon 49802930 49802974 49802930 ID=Msa0409300-mRNA-1:exon:9787;Parent=Msa0409300-mRNA-1
chr3_2 exon 49803617 49804085 49803617 ID=Msa0409300-mRNA-1:exon:9788;Parent=Msa0409300-mRNA-1
chr3_2 five_prime_UTR 49799716 49799981 49799716 ID=Msa0409300-mRNA-1:five_prime_utr;Parent=Msa0409300-mRNA-1
chr3_2 five_prime_UTR 49801946 49801949 49801946 ID=Msa0409300-mRNA-1:five_prime_utr;Parent=Msa0409300-mRNA-1
chr3_2 CDS 49801950 49802158 49801950 ID=Msa0409300-mRNA-1:cds;Parent=Msa0409300-mRNA-1
chr3_2 CDS 49802448 49802650 49802448 ID=Msa0409300-mRNA-1:cds;Parent=Msa0409300-mRNA-1
chr3_2 CDS 49802734 49802834 49802734 ID=Msa0409300-mRNA-1:cds;Parent=Msa0409300-mRNA-1
chr3_2 CDS 49802930 49802974 49802930 ID=Msa0409300-mRNA-1:cds;Parent=Msa0409300-mRNA-1
chr3_2 CDS 49803617 49803748 49803617 ID=Msa0409300-mRNA-1:cds;Parent=Msa0409300-mRNA-1
chr3_2 three_prime_UTR 49803749 49804085 49803749 ID=Msa0409300-mRNA-1:three_prime_utr;Parent=Msa0409300-mRNA-1
Gene Sequence

>Msa0409300

ATGGCATCTTCTTCAGACTCATGGTTGAAGGAATACAATGAAGCAATGAAACTTGCTGATGATATCAGTGGCATGATTTCTGAACATAATTCATTTCCTTCATCTGGACCAGAAACACAACGTCATGCATCTGCTATAAGAAGGAAAATCACAATATTGGGGACCCGATTAGATAGCTTGCAATCCCTTTTGTCAAAGCTCCCTGTAAAGTCTGAGAAGGAGATGAATCGTCGCAAGGACAACCTTGCAAATTTGAGGTCAAAGGTTAACCAAATGGCTTCAACTTTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGCTCGGGCCAGAAATTAAACCAGATGCAATGAGCAGAACTGTTGGCTTGGATAACAATGGACTTGTTGGTCTGCAACGGCAAGTTATGAAAGAGCAAGATGAGGGCCTTGAGAAATTGGAGGAGACCGTATTAAGTACAAAACATATTGCGTTGGCAGTGAATGAAGAGCTGACTCTACACACTAGACTCATTGATGACTTGGATGAACATGTAGATGTCACAGATTCTCGGCTGAGGAGAGTGCAGAAGAACTTGGCAATTTTAAACAAACGTACTAAGGGTGGTTGCTCATGCATGTGCATGCTATTAGCAGTGATTGGTATAGTGGGTTTGGTTCTTGTCATATGGCTTCTGGTCAAATATTTGTAG

Protein sequence

>Msa0409300

MASSSDSWLKEYNEAMKLADDISGMISEHNSFPSSGPETQRHASAIRRKITILGTRLDSLQSLLSKLPVKSEKEMNRRKDNLANLRSKVNQMASTLNMSNFANRDSLLGPEIKPDAMSRTVGLDNNGLVGLQRQVMKEQDEGLEKLEETVLSTKHIALAVNEELTLHTRLIDDLDEHVDVTDSRLRRVQKNLAILNKRTKGGCSCMCMLLAVIGIVGLVLVIWLLVKYL*