Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0573200 | XP_039684434.1 | 78.070 | 114 | 17 | 1 | 64 | 169 | 299 | 412 | 2.58e-46 | 174 |
| Msa0573200 | XP_039684434.1 | 90.476 | 42 | 4 | 0 | 23 | 64 | 93 | 134 | 2.80e-13 | 80.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0573200 | A0A396GSM2 | 78.070 | 114 | 17 | 1 | 64 | 169 | 299 | 412 | 1.23e-46 | 174 |
| Msa0573200 | A0A396GSM2 | 90.476 | 42 | 4 | 0 | 23 | 64 | 93 | 134 | 1.34e-13 | 80.5 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0403640 | Msa0573200 | 0.809459 | 1.872701e-50 | -8.615850e-47 |
| Msa0529890 | Msa0573200 | 0.814091 | 1.838182e-51 | -8.615850e-47 |
| Msa0573200 | Msa0585560 | 0.810418 | 1.163892e-50 | -8.615850e-47 |
| Msa0573200 | Msa0625720 | 0.814710 | 1.341338e-51 | -8.615850e-47 |
| Msa0573200 | Msa0661650 | 0.804239 | 2.376474e-49 | -8.615850e-47 |
| Msa0573200 | Msa0663390 | 0.802517 | 5.402469e-49 | -8.615850e-47 |
| Msa0573200 | Msa1029490 | 0.816059 | 6.719946e-52 | -8.615850e-47 |
| Msa0573200 | Msa1066670 | 0.821237 | 4.491848e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0573200 | MtrunA17_Chr8g0388951 | 78.070 | 114 | 17 | 1 | 64 | 169 | 299 | 412 | 2.37e-50 | 174 |
| Msa0573200 | MtrunA17_Chr8g0388951 | 90.476 | 42 | 4 | 0 | 23 | 64 | 93 | 134 | 2.57e-17 | 80.5 |
| Msa0573200 | MtrunA17_Chr8g0388961 | 63.559 | 118 | 37 | 3 | 64 | 176 | 310 | 426 | 1.02e-38 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 35 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCAAAATTGTGCTGGAAAA+TGG | 0.235298 | 4_1:-76297640 | Msa0573200:CDS |
| TAAATCCTTCTCATCTTGTA+TGG | 0.365519 | 4_1:+76294053 | None:intergenic |
| GAAGCACACCTGGAAAGATA+TGG | 0.374658 | 4_1:+76297616 | None:intergenic |
| GACAAAGGGGCAAATCAAAT+TGG | 0.382720 | 4_1:-76297037 | Msa0573200:CDS |
| AAAATGGCCCATATCTTTCC+AGG | 0.398649 | 4_1:-76297624 | Msa0573200:intron |
| GCATTTGATGAGAGAAATCA+TGG | 0.427491 | 4_1:-76296825 | Msa0573200:CDS |
| GCTTCAAGTTGCTGAAGATA+AGG | 0.482406 | 4_1:-76295084 | Msa0573200:CDS |
| TGGCAGCTAGTGACTCATCA+TGG | 0.482901 | 4_1:+76297101 | None:intergenic |
| GAGTTGAATATACTTGTTTG+AGG | 0.483136 | 4_1:-76297003 | Msa0573200:intron |
| GGCAGCTAGTGACTCATCAT+GGG | 0.483999 | 4_1:+76297102 | None:intergenic |
| AGATCAATGAAATTGACAAA+GGG | 0.499254 | 4_1:-76297051 | Msa0573200:CDS |
| TGAATTTGCCAAAATTGTGC+TGG | 0.501015 | 4_1:-76297647 | Msa0573200:CDS |
| TACTCGCTAACAGATATGCT+TGG | 0.527106 | 4_1:-76295134 | Msa0573200:intron |
| TCCCTTGGCAGACAAGTTCG+CGG | 0.541483 | 4_1:-76294127 | Msa0573200:intron |
| AAGCACACCTGGAAAGATAT+GGG | 0.544686 | 4_1:+76297617 | None:intergenic |
| CAAAATATAGCAATTAGCGA+AGG | 0.545530 | 4_1:+76298337 | None:intergenic |
| TTATCTTCAGCAACTTGAAG+CGG | 0.548477 | 4_1:+76295086 | None:intergenic |
| GGGGTCTGTTTCCAAGTCTG+AGG | 0.550889 | 4_1:-76294079 | Msa0573200:CDS |
| CTTCAGCAACTTGAAGCGGA+AGG | 0.553522 | 4_1:+76295090 | None:intergenic |
| ATGTGCGATTTCATTTAACT+TGG | 0.554369 | 4_1:+76297081 | None:intergenic |
| TTGAGGATGACATCTCATCT+AGG | 0.558463 | 4_1:-76295061 | Msa0573200:intron |
| TTGTATGGACTCCTCAGACT+TGG | 0.559896 | 4_1:+76294068 | None:intergenic |
| TTCAGCAACTTGAAGCGGAA+GGG | 0.561068 | 4_1:+76295091 | None:intergenic |
| AGTTGCTGAAGATAAGGTTG+AGG | 0.566335 | 4_1:-76295078 | Msa0573200:CDS |
| GAGATCAATGAAATTGACAA+AGG | 0.566860 | 4_1:-76297052 | Msa0573200:CDS |
| AAAATATAGCAATTAGCGAA+GGG | 0.573229 | 4_1:+76298338 | None:intergenic |
| GGAGTCCATACAAGATGAGA+AGG | 0.590041 | 4_1:-76294058 | Msa0573200:CDS |
| CTTGGCGAAGAAGAATCTGA+TGG | 0.605600 | 4_1:-76295116 | Msa0573200:CDS |
| GATCAATGAAATTGACAAAG+GGG | 0.624164 | 4_1:-76297050 | Msa0573200:CDS |
| GATCAATACAAACTCAAATG+TGG | 0.630350 | 4_1:+76296850 | None:intergenic |
| GCAGCTAGTGACTCATCATG+GGG | 0.632804 | 4_1:+76297103 | None:intergenic |
| CCATTGATAGAAAAGCATCT+CGG | 0.641420 | 4_1:+76297695 | None:intergenic |
| CATTTGATGAGAGAAATCAT+GGG | 0.667572 | 4_1:-76296824 | Msa0573200:CDS |
| GGGTCAACTTATTGTCAAAG+TGG | 0.668278 | 4_1:-76296902 | Msa0573200:CDS |
| ATTTGATGAGAGAAATCATG+GGG | 0.682250 | 4_1:-76296823 | Msa0573200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTACAAGATAATTATTA+AGG | - | chr4_1:76296531-76296550 | Msa0573200:intron | 10.0% |
| !! | AATTTCATCATGAAAAATAA+AGG | - | chr4_1:76297135-76297154 | Msa0573200:intron | 15.0% |
| !! | ACAAATTATAAACTCATAAA+AGG | + | chr4_1:76297449-76297468 | None:intergenic | 15.0% |
| !! | ATATATTTATTTATTGCTAC+AGG | - | chr4_1:76297863-76297882 | Msa0573200:intron | 15.0% |
| !! | TACTTTAATTATATTTGGTA+TGG | - | chr4_1:76297959-76297978 | Msa0573200:intron | 15.0% |
| !! | TTGAATTGAATGAAAGAAAA+CGG | + | chr4_1:76294080-76294099 | None:intergenic | 20.0% |
| !!! | TTTTCATTTTCTTCAACTTT+CGG | + | chr4_1:76294406-76294425 | None:intergenic | 20.0% |
| !!! | TTGAGATTTGTTGATAAAAA+TGG | - | chr4_1:76294850-76294869 | Msa0573200:intron | 20.0% |
| !! | AATGTAAATTAGAATGCTAT+CGG | + | chr4_1:76296195-76296214 | None:intergenic | 20.0% |
| !! | AAAATTTCTTAATTGCTGAT+GGG | - | chr4_1:76296457-76296476 | Msa0573200:intron | 20.0% |
| !! | GTCTAAATTAACAAAAAGTA+TGG | + | chr4_1:76296796-76296815 | None:intergenic | 20.0% |
| !!! | GAATATTGCAGTTTTTTTTT+TGG | - | chr4_1:76297078-76297097 | Msa0573200:CDS | 20.0% |
| !!! | TAGTTTGATAGTTTAAAACA+GGG | + | chr4_1:76297693-76297712 | None:intergenic | 20.0% |
| !!! | ATAGTTTGATAGTTTAAAAC+AGG | + | chr4_1:76297694-76297713 | None:intergenic | 20.0% |
| !! | AAACAAAGAGTAATGAAATT+TGG | - | chr4_1:76298109-76298128 | Msa0573200:intron | 20.0% |
| ! | AAAATATAGCAATTAGCGAA+GGG | + | chr4_1:76293966-76293985 | None:intergenic | 25.0% |
| !! | TTTTGTCAAAGAACAAAGAA+AGG | - | chr4_1:76293982-76294001 | Msa0573200:three_prime_UTR | 25.0% |
| !!! | TTTTGCAATGTTTTTGTGTA+AGG | - | chr4_1:76294155-76294174 | Msa0573200:intron | 25.0% |
| ! | CTAGTTAAGAAAAGTAGTAA+TGG | - | chr4_1:76294279-76294298 | Msa0573200:intron | 25.0% |
| !!! | AAATCGATTCTTTTTTCAAG+AGG | - | chr4_1:76294314-76294333 | Msa0573200:intron | 25.0% |
| !! | TTTCATTTTCTTCAACTTTC+GGG | + | chr4_1:76294405-76294424 | None:intergenic | 25.0% |
| ! | ATCAACAACTATGCAAAATT+TGG | + | chr4_1:76294788-76294807 | None:intergenic | 25.0% |
| !! | AAATTTTGCATAGTTGTTGA+TGG | - | chr4_1:76294787-76294806 | Msa0573200:intron | 25.0% |
| !!! | AAAATGGTTTTATACAAGAG+CGG | - | chr4_1:76294866-76294885 | Msa0573200:intron | 25.0% |
| ! | TATGTTCAAAACAATGAATG+TGG | + | chr4_1:76295074-76295093 | None:intergenic | 25.0% |
| ! | AGATCAATGAAATTGACAAA+GGG | - | chr4_1:76295250-76295269 | Msa0573200:intron | 25.0% |
| ! | CATTCTAATTTACATTGAGA+AGG | - | chr4_1:76296199-76296218 | Msa0573200:intron | 25.0% |
| ! | GAAAATTTCTTAATTGCTGA+TGG | - | chr4_1:76296456-76296475 | Msa0573200:intron | 25.0% |
| !!! | CAGTGTGTTATTAGTTTTAT+CGG | - | chr4_1:76296829-76296848 | Msa0573200:CDS | 25.0% |
| !!! | TTATTAGTTTTATCGGAAGT+CGG | - | chr4_1:76296836-76296855 | Msa0573200:CDS | 25.0% |
| ! | TCAATCAAACATAATCAATG+AGG | + | chr4_1:76296884-76296903 | None:intergenic | 25.0% |
| ! | GTTAGCAAAATCAAAATGTA+TGG | - | chr4_1:76297103-76297122 | Msa0573200:CDS | 25.0% |
| ! | AATTAGCAAATGAGTCAAAT+GGG | + | chr4_1:76297361-76297380 | None:intergenic | 25.0% |
| ! | TAATTAGCAAATGAGTCAAA+TGG | + | chr4_1:76297362-76297381 | None:intergenic | 25.0% |
| ! | TATTCAAAACAGAATCATCA+AGG | - | chr4_1:76297495-76297514 | Msa0573200:intron | 25.0% |
| ! | AAATGAAATGTCACAAAGAA+AGG | + | chr4_1:76297824-76297843 | None:intergenic | 25.0% |
| ! | TTGTACAATATAAAGTGAGA+TGG | - | chr4_1:76297995-76298014 | Msa0573200:intron | 25.0% |
| !!! | GGTTCATTTGTTTTAGAATA+AGG | - | chr4_1:76298086-76298105 | Msa0573200:intron | 25.0% |
| CAAAATATAGCAATTAGCGA+AGG | + | chr4_1:76293967-76293986 | None:intergenic | 30.0% | |
| TGAATGAAAGAAAACGGAAA+AGG | + | chr4_1:76294074-76294093 | None:intergenic | 30.0% | |
| ATTGTGTTCTTCAACTGTTT+AGG | - | chr4_1:76294183-76294202 | Msa0573200:intron | 30.0% | |
| AAATGAAAAACAACGTTCCA+AGG | - | chr4_1:76294417-76294436 | Msa0573200:intron | 30.0% | |
| ATGTGCGATTTCATTTAACT+TGG | + | chr4_1:76295223-76295242 | None:intergenic | 30.0% | |
| GAGATCAATGAAATTGACAA+AGG | - | chr4_1:76295249-76295268 | Msa0573200:intron | 30.0% | |
| GATCAATGAAATTGACAAAG+GGG | - | chr4_1:76295251-76295270 | Msa0573200:intron | 30.0% | |
| GAGTTGAATATACTTGTTTG+AGG | - | chr4_1:76295298-76295317 | Msa0573200:intron | 30.0% | |
| !! | TTGAAAAACTTGCTGATGAT+GGG | - | chr4_1:76295379-76295398 | Msa0573200:intron | 30.0% |
| GATCAATACAAACTCAAATG+TGG | + | chr4_1:76295454-76295473 | None:intergenic | 30.0% | |
| CATTTGATGAGAGAAATCAT+GGG | - | chr4_1:76295477-76295496 | Msa0573200:intron | 30.0% | |
| ATTTGATGAGAGAAATCATG+GGG | - | chr4_1:76295478-76295497 | Msa0573200:intron | 30.0% | |
| CTTCAAAACATTAGACAAGA+TGG | - | chr4_1:76295579-76295598 | Msa0573200:intron | 30.0% | |
| AAAACATTAGACAAGATGGT+TGG | - | chr4_1:76295583-76295602 | Msa0573200:intron | 30.0% | |
| AAACATTAGACAAGATGGTT+GGG | - | chr4_1:76295584-76295603 | Msa0573200:intron | 30.0% | |
| TGCTATTCAACTCTTGTAAT+AGG | + | chr4_1:76295776-76295795 | None:intergenic | 30.0% | |
| TGTAGAAAAATGTTATCCCA+TGG | - | chr4_1:76295893-76295912 | Msa0573200:intron | 30.0% | |
| CCAAACATGTACATAATTCT+TGG | + | chr4_1:76296016-76296035 | None:intergenic | 30.0% | |
| CCAAGAATTATGTACATGTT+TGG | - | chr4_1:76296013-76296032 | Msa0573200:intron | 30.0% | |
| CATTGCTGAAAAAGATCTTT+CGG | + | chr4_1:76296123-76296142 | None:intergenic | 30.0% | |
| !!! | AAGGTTTTGAACAACCATTT+AGG | - | chr4_1:76296720-76296739 | Msa0573200:intron | 30.0% |
| TCAATGAAATATGTGATGCA+CGG | + | chr4_1:76296751-76296770 | None:intergenic | 30.0% | |
| GATCCTAAATGAGAAAACAT+GGG | + | chr4_1:76296932-76296951 | None:intergenic | 30.0% | |
| TGATCCTAAATGAGAAAACA+TGG | + | chr4_1:76296933-76296952 | None:intergenic | 30.0% | |
| TTCATGAATCACTGCATATT+AGG | - | chr4_1:76297008-76297027 | Msa0573200:CDS | 30.0% | |
| CTGCTCTACATAATTAATCA+TGG | + | chr4_1:76297046-76297065 | None:intergenic | 30.0% | |
| !!! | ATATCCTTTTTTTTGTGCCT+CGG | - | chr4_1:76297469-76297488 | Msa0573200:intron | 30.0% |
| !! | TTCTGTTTTGAATAAATCCG+AGG | + | chr4_1:76297489-76297508 | None:intergenic | 30.0% |
| AACTGACATTATTCCTCAAA+AGG | + | chr4_1:76297546-76297565 | None:intergenic | 30.0% | |
| !! | CTGTTTGGTGTTTAATACAT+TGG | + | chr4_1:76297748-76297767 | None:intergenic | 30.0% |
| TTTGTGACATTTCATTTCAG+CGG | - | chr4_1:76297827-76297846 | Msa0573200:intron | 30.0% | |
| ATGATACTGAACACAATACT+TGG | - | chr4_1:76298048-76298067 | Msa0573200:intron | 30.0% | |
| ACTTGGATTCTTTCAAACTT+TGG | - | chr4_1:76298065-76298084 | Msa0573200:intron | 30.0% | |
| TAAATCCTTCTCATCTTGTA+TGG | + | chr4_1:76298251-76298270 | None:intergenic | 30.0% | |
| TCTTAACTAGTGAACTGCAT+AGG | + | chr4_1:76294269-76294288 | None:intergenic | 35.0% | |
| !! | CCATTGATAGAAAAGCATCT+CGG | + | chr4_1:76294609-76294628 | None:intergenic | 35.0% |
| ! | TGCTTTTCTATCAATGGCAA+AGG | - | chr4_1:76294612-76294631 | Msa0573200:intron | 35.0% |
| TGAATTTGCCAAAATTGTGC+TGG | - | chr4_1:76294654-76294673 | Msa0573200:intron | 35.0% | |
| AAATTGAAATGAAGCACACC+TGG | + | chr4_1:76294698-76294717 | None:intergenic | 35.0% | |
| TAAAGACTTTGAGCCATTAG+AGG | - | chr4_1:76294909-76294928 | Msa0573200:intron | 35.0% | |
| GCGTAAATTTCTTCCTCTAA+TGG | + | chr4_1:76294925-76294944 | None:intergenic | 35.0% | |
| ! | CTTGATGTTTCTAACATTCG+TGG | - | chr4_1:76294964-76294983 | Msa0573200:intron | 35.0% |
| TTTCTAACATTCGTGGTCAA+GGG | - | chr4_1:76294971-76294990 | Msa0573200:intron | 35.0% | |
| CAATGAATGTGGTATGCATA+AGG | + | chr4_1:76295063-76295082 | None:intergenic | 35.0% | |
| !! | CTTGAAAAACTTGCTGATGA+TGG | - | chr4_1:76295378-76295397 | Msa0573200:intron | 35.0% |
| GCATTTGATGAGAGAAATCA+TGG | - | chr4_1:76295476-76295495 | Msa0573200:intron | 35.0% | |
| ACTACAATGTCCATATGTCA+AGG | - | chr4_1:76295530-76295549 | Msa0573200:intron | 35.0% | |
| ! | CTATTGTGATGTGATCCTTT+TGG | + | chr4_1:76295710-76295729 | None:intergenic | 35.0% |
| TCCTGCTTATTGAAATCCAT+GGG | + | chr4_1:76295912-76295931 | None:intergenic | 35.0% | |
| GAATTATGTACATGTTTGGC+AGG | - | chr4_1:76296017-76296036 | Msa0573200:intron | 35.0% | |
| AGACTATGTTGAGAAACATG+AGG | - | chr4_1:76296153-76296172 | Msa0573200:intron | 35.0% | |
| TTATCTGTGCAAGTACATGT+TGG | + | chr4_1:76296688-76296707 | None:intergenic | 35.0% | |
| CAATGAAATATGTGATGCAC+GGG | + | chr4_1:76296750-76296769 | None:intergenic | 35.0% | |
| CATATTTCATTGAGCACGTA+AGG | - | chr4_1:76296758-76296777 | Msa0573200:intron | 35.0% | |
| TTGAGCACGTAAGGAATTAA+CGG | - | chr4_1:76296767-76296786 | Msa0573200:intron | 35.0% | |
| GTCGGAACATACATTACAAA+AGG | - | chr4_1:76296854-76296873 | Msa0573200:CDS | 35.0% | |
| !! | ATTTAGGATCAGTTCTGAGA+TGG | - | chr4_1:76296942-76296961 | Msa0573200:CDS | 35.0% |
| CTGCATATGATCTTACACAT+AGG | - | chr4_1:76296965-76296984 | Msa0573200:intron | 35.0% | |
| TTATCTTCAGCAACTTGAAG+CGG | + | chr4_1:76297218-76297237 | None:intergenic | 35.0% | |
| !! | TCTCATCTAGGTATTGATTC+TGG | - | chr4_1:76297252-76297271 | Msa0573200:intron | 35.0% |
| ! | TGGGAAGCATAAGAAATAGA+TGG | + | chr4_1:76297342-76297361 | None:intergenic | 35.0% |
| TATCAAATGACTTCTTGCAG+AGG | + | chr4_1:76297425-76297444 | None:intergenic | 35.0% | |
| AAATCCGAGGCACAAAAAAA+AGG | + | chr4_1:76297476-76297495 | None:intergenic | 35.0% | |
| AAAACAGAATCATCAAGGCA+TGG | - | chr4_1:76297500-76297519 | Msa0573200:intron | 35.0% | |
| ! | TCATGTAACTTTGCCTTTTG+AGG | - | chr4_1:76297530-76297549 | Msa0573200:intron | 35.0% |
| TCAAGCTTAGATTCAATGTC+AGG | - | chr4_1:76297586-76297605 | Msa0573200:intron | 35.0% | |
| ! | TAGTTTAAAACAGGGCATTC+AGG | + | chr4_1:76297685-76297704 | None:intergenic | 35.0% |
| CATTTGCTTATGTAAGACTG+TGG | - | chr4_1:76297791-76297810 | Msa0573200:intron | 35.0% | |
| AAATGTCACAAAGAAAGGTG+AGG | + | chr4_1:76297819-76297838 | None:intergenic | 35.0% | |
| TTGCTACAGGTAGTTTGAAA+AGG | - | chr4_1:76297876-76297895 | Msa0573200:intron | 35.0% | |
| ATCATACAGTGGCAGTTATA+AGG | - | chr4_1:76298022-76298041 | Msa0573200:intron | 35.0% | |
| TCATACAGTGGCAGTTATAA+GGG | - | chr4_1:76298023-76298042 | Msa0573200:intron | 35.0% | |
| TCAATCAACCTTCACTTCTC+AGG | - | chr4_1:76294043-76294062 | Msa0573200:CDS | 40.0% | |
| AGGAAAAACCTGAGAAGTGA+AGG | + | chr4_1:76294054-76294073 | None:intergenic | 40.0% | |
| !!! | ACAGTTTTCAGGTTTAGACG+TGG | + | chr4_1:76294374-76294393 | None:intergenic | 40.0% |
| ! | ATATGCAACTCTAGGAACCT+TGG | + | chr4_1:76294437-76294456 | None:intergenic | 40.0% |
| AAGGTTCCTAGAGTTGCATA+TGG | - | chr4_1:76294436-76294455 | Msa0573200:intron | 40.0% | |
| AACTCACCATATGCAACTCT+AGG | + | chr4_1:76294445-76294464 | None:intergenic | 40.0% | |
| TAGAGTTGCATATGGTGAGT+TGG | - | chr4_1:76294444-76294463 | Msa0573200:intron | 40.0% | |
| ! | CCGAGATGCTTTTCTATCAA+TGG | - | chr4_1:76294606-76294625 | Msa0573200:intron | 40.0% |
| GCCAAAATTGTGCTGGAAAA+TGG | - | chr4_1:76294661-76294680 | Msa0573200:intron | 40.0% | |
| !! | GCCATTTTCCAGCACAATTT+TGG | + | chr4_1:76294665-76294684 | None:intergenic | 40.0% |
| AAAATGGCCCATATCTTTCC+AGG | - | chr4_1:76294677-76294696 | Msa0573200:intron | 40.0% | |
| AAGCACACCTGGAAAGATAT+GGG | + | chr4_1:76294687-76294706 | None:intergenic | 40.0% | |
| AGTCAAAAGTCATATTCGCG+AGG | - | chr4_1:76294750-76294769 | Msa0573200:intron | 40.0% | |
| AGTCATATTCGCGAGGAAAT+TGG | - | chr4_1:76294757-76294776 | Msa0573200:intron | 40.0% | |
| ! | GTTGTTGATGGAGTTTGTGA+TGG | - | chr4_1:76294799-76294818 | Msa0573200:intron | 40.0% |
| !! | AGTTTGTGATGGACCACAAA+AGG | - | chr4_1:76294810-76294829 | Msa0573200:intron | 40.0% |
| TGGACCACAAAAGGAACAAA+TGG | - | chr4_1:76294819-76294838 | Msa0573200:intron | 40.0% | |
| ! | AGAGCCATTTGTTCCTTTTG+TGG | + | chr4_1:76294826-76294845 | None:intergenic | 40.0% |
| GTTTCTAACATTCGTGGTCA+AGG | - | chr4_1:76294970-76294989 | Msa0573200:intron | 40.0% | |
| CTAGCGATATGAGAGAACAA+TGG | - | chr4_1:76295004-76295023 | Msa0573200:intron | 40.0% | |
| GACAAAGGGGCAAATCAAAT+TGG | - | chr4_1:76295264-76295283 | Msa0573200:intron | 40.0% | |
| GGGTCAACTTATTGTCAAAG+TGG | - | chr4_1:76295399-76295418 | Msa0573200:intron | 40.0% | |
| !!! | AATGTTTTGAAGCAGCGCTT+TGG | + | chr4_1:76295571-76295590 | None:intergenic | 40.0% |
| CTGTGCAAAGCATGATATTG+AGG | - | chr4_1:76295635-76295654 | Msa0573200:intron | 40.0% | |
| !! | ACATACGGAGCATTGAATTG+AGG | + | chr4_1:76295663-76295682 | None:intergenic | 40.0% |
| TGCCATGGTCTTTCTACATA+CGG | + | chr4_1:76295678-76295697 | None:intergenic | 40.0% | |
| CAAGTTTAGTGACCAAGCAA+TGG | - | chr4_1:76295794-76295813 | Msa0573200:intron | 40.0% | |
| GAGTTAACAACTCCATTGCT+TGG | + | chr4_1:76295809-76295828 | None:intergenic | 40.0% | |
| GTTAACTCTATGCTCTGCTT+TGG | - | chr4_1:76295821-76295840 | Msa0573200:intron | 40.0% | |
| AAAGCTTTGCAACTATCCTC+AGG | + | chr4_1:76295849-76295868 | None:intergenic | 40.0% | |
| TCCCATGGATTTCAATAAGC+AGG | - | chr4_1:76295908-76295927 | Msa0573200:intron | 40.0% | |
| CTCCTGCTTATTGAAATCCA+TGG | + | chr4_1:76295913-76295932 | None:intergenic | 40.0% | |
| ATGTTTGGCAGGAACAAGAA+AGG | - | chr4_1:76296028-76296047 | Msa0573200:intron | 40.0% | |
| ! | CATGACTCTTCCGGTTTTTA+CGG | - | chr4_1:76296091-76296110 | Msa0573200:intron | 40.0% |
| AATCATTCACAGAGCTACAC+AGG | + | chr4_1:76296289-76296308 | None:intergenic | 40.0% | |
| GATTGCATCATCAAACCATC+AGG | - | chr4_1:76296305-76296324 | Msa0573200:intron | 40.0% | |
| AATCAGAGACAGTAACCTGA+TGG | + | chr4_1:76296323-76296342 | None:intergenic | 40.0% | |
| CGGGAATGTTCAGTGATAAA+CGG | + | chr4_1:76296392-76296411 | None:intergenic | 40.0% | |
| TTCTCAAGTGAGCAGAATTG+CGG | + | chr4_1:76296412-76296431 | None:intergenic | 40.0% | |
| CAATTCTGCTCACTTGAGAA+AGG | - | chr4_1:76296412-76296431 | Msa0573200:intron | 40.0% | |
| ! | AAGTACATGTTGGCTATGCA+TGG | + | chr4_1:76296678-76296697 | None:intergenic | 40.0% |
| TTGTTCAAAACCTTGCAGCT+GGG | + | chr4_1:76296714-76296733 | None:intergenic | 40.0% | |
| ! | GCACCCATGTTTTCTCATTT+AGG | - | chr4_1:76296926-76296945 | Msa0573200:CDS | 40.0% |
| TACTCGCTAACAGATATGCT+TGG | - | chr4_1:76297167-76297186 | Msa0573200:intron | 40.0% | |
| !! | GCTTCAAGTTGCTGAAGATA+AGG | - | chr4_1:76297217-76297236 | Msa0573200:intron | 40.0% |
| AGTTGCTGAAGATAAGGTTG+AGG | - | chr4_1:76297223-76297242 | Msa0573200:intron | 40.0% | |
| TTGAGGATGACATCTCATCT+AGG | - | chr4_1:76297240-76297259 | Msa0573200:intron | 40.0% | |
| GTGCATCATCTCAAACAGAA+TGG | + | chr4_1:76297393-76297412 | None:intergenic | 40.0% | |
| ! | TGCTTAAGTCATGTGCTGTT+TGG | + | chr4_1:76297763-76297782 | None:intergenic | 40.0% |
| GAGATGGCTTAATCATACAG+TGG | - | chr4_1:76298011-76298030 | Msa0573200:intron | 40.0% | |
| ! | CTGATTCAATTTTCCTCCCT+TGG | - | chr4_1:76298159-76298178 | Msa0573200:intron | 40.0% |
| ! | TCTTTTCTTGAGGCTCTTGA+GGG | - | chr4_1:76298202-76298221 | Msa0573200:intron | 40.0% |
| GAAGCACACCTGGAAAGATA+TGG | + | chr4_1:76294688-76294707 | None:intergenic | 45.0% | |
| ACATAAGTTGCTACCTGCCT+TGG | - | chr4_1:76295089-76295108 | Msa0573200:CDS | 45.0% | |
| TTCTGACGATGCACAAACCA+AGG | + | chr4_1:76295109-76295128 | None:intergenic | 45.0% | |
| GACATTGTAGTTGCACAGCT+CGG | + | chr4_1:76295521-76295540 | None:intergenic | 45.0% | |
| CGAACTACGTCCTTGACATA+TGG | + | chr4_1:76295543-76295562 | None:intergenic | 45.0% | |
| CTCCGTATGTAGAAAGACCA+TGG | - | chr4_1:76295673-76295692 | Msa0573200:intron | 45.0% | |
| CCGGAAGAGTCATGATAAGA+CGG | + | chr4_1:76296085-76296104 | None:intergenic | 45.0% | |
| CCGTCTTATCATGACTCTTC+CGG | - | chr4_1:76296082-76296101 | Msa0573200:intron | 45.0% | |
| !! | TACTGAGCTTCCTTGCTGTT+AGG | - | chr4_1:76296361-76296380 | Msa0573200:intron | 45.0% |
| AACGGCTTAACCTAACAGCA+AGG | + | chr4_1:76296374-76296393 | None:intergenic | 45.0% | |
| TCTCAAGTGAGCAGAATTGC+GGG | + | chr4_1:76296411-76296430 | None:intergenic | 45.0% | |
| GCATGGAAAAACTGTTGTGC+TGG | + | chr4_1:76296661-76296680 | None:intergenic | 45.0% | |
| GTTGTTCAAAACCTTGCAGC+TGG | + | chr4_1:76296715-76296734 | None:intergenic | 45.0% | |
| ! | GATGCACGGGTTTTCCTAAA+TGG | + | chr4_1:76296737-76296756 | None:intergenic | 45.0% |
| CTTGGCGAAGAAGAATCTGA+TGG | - | chr4_1:76297185-76297204 | Msa0573200:intron | 45.0% | |
| TTCAGCAACTTGAAGCGGAA+GGG | + | chr4_1:76297213-76297232 | None:intergenic | 45.0% | |
| TAGATGTGACGAATGTGACG+AGG | - | chr4_1:76297609-76297628 | Msa0573200:intron | 45.0% | |
| CACTACCAGTTGTGTCATCT+TGG | - | chr4_1:76297718-76297737 | Msa0573200:CDS | 45.0% | |
| !! | CGCGGTTTTGTCTTTTCTTG+AGG | - | chr4_1:76298192-76298211 | Msa0573200:intron | 45.0% |
| ! | GTCTTTTCTTGAGGCTCTTG+AGG | - | chr4_1:76298201-76298220 | Msa0573200:intron | 45.0% |
| ! | CTTTTCTTGAGGCTCTTGAG+GGG | - | chr4_1:76298203-76298222 | Msa0573200:intron | 45.0% |
| TTGTATGGACTCCTCAGACT+TGG | + | chr4_1:76298236-76298255 | None:intergenic | 45.0% | |
| GGAGTCCATACAAGATGAGA+AGG | - | chr4_1:76298243-76298262 | Msa0573200:intron | 45.0% | |
| !!! | AATATTTATTATTAGTTTTT+AGG | - | chr4_1:76294131-76294150 | Msa0573200:intron | 5.0% |
| !!! | ATATTTATTATTAGTTTTTA+GGG | - | chr4_1:76294132-76294151 | Msa0573200:intron | 5.0% |
| !! | TAAATTACTTTAATTATATT+TGG | - | chr4_1:76297954-76297973 | Msa0573200:intron | 5.0% |
| ! | GGGTTCTCGAGACAGTTTTC+AGG | + | chr4_1:76294385-76294404 | None:intergenic | 50.0% |
| ! | ATTCGTGGTCAAGGGTACGA+TGG | - | chr4_1:76294979-76294998 | Msa0573200:intron | 50.0% |
| GCAGCTAGTGACTCATCATG+GGG | + | chr4_1:76295201-76295220 | None:intergenic | 50.0% | |
| GGCAGCTAGTGACTCATCAT+GGG | + | chr4_1:76295202-76295221 | None:intergenic | 50.0% | |
| TGGCAGCTAGTGACTCATCA+TGG | + | chr4_1:76295203-76295222 | None:intergenic | 50.0% | |
| !!! | TTTTGGTGACGAGAGTGCCA+TGG | + | chr4_1:76295693-76295712 | None:intergenic | 50.0% |
| ATGGCACTCTCGTCACCAAA+AGG | - | chr4_1:76295692-76295711 | Msa0573200:intron | 50.0% | |
| ! | ATGCTCTGCTTTGGTTCCTG+AGG | - | chr4_1:76295830-76295849 | Msa0573200:intron | 50.0% |
| TCGGTTGCAGCCGTAAAAAC+CGG | + | chr4_1:76296104-76296123 | None:intergenic | 50.0% | |
| CAGATAAGTACCCAGCTGCA+AGG | - | chr4_1:76296701-76296720 | Msa0573200:intron | 50.0% | |
| CTTCAGCAACTTGAAGCGGA+AGG | + | chr4_1:76297214-76297233 | None:intergenic | 50.0% | |
| GCTGACCAAGATGACACAAC+TGG | + | chr4_1:76297726-76297745 | None:intergenic | 50.0% | |
| GACGATGCACAAACCAAGGC+AGG | + | chr4_1:76295105-76295124 | None:intergenic | 55.0% | |
| TCCCTTGGCAGACAAGTTCG+CGG | - | chr4_1:76298174-76298193 | Msa0573200:intron | 55.0% | |
| ACCGCGAACTTGTCTGCCAA+GGG | + | chr4_1:76298178-76298197 | None:intergenic | 55.0% | |
| AACCGCGAACTTGTCTGCCA+AGG | + | chr4_1:76298179-76298198 | None:intergenic | 55.0% | |
| GGGGTCTGTTTCCAAGTCTG+AGG | - | chr4_1:76298222-76298241 | Msa0573200:intron | 55.0% | |
| GCGAACTTGTCTGCCAAGGG+AGG | + | chr4_1:76298175-76298194 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 76293936 | 76298387 | 76293936 | ID=Msa0573200;Name=Msa0573200 |
| chr4_1 | mRNA | 76293936 | 76298387 | 76293936 | ID=Msa0573200-mRNA-1;Parent=Msa0573200;Name=Msa0573200-mRNA-1;_AED=0.55;_eAED=0.65;_QI=0|0|0.16|0.83|0.4|0.66|6|90|230 |
| chr4_1 | exon | 76293936 | 76294138 | 76293936 | ID=Msa0573200-mRNA-1:exon:26696;Parent=Msa0573200-mRNA-1 |
| chr4_1 | exon | 76295062 | 76295143 | 76295062 | ID=Msa0573200-mRNA-1:exon:26695;Parent=Msa0573200-mRNA-1 |
| chr4_1 | exon | 76296799 | 76296979 | 76296799 | ID=Msa0573200-mRNA-1:exon:26694;Parent=Msa0573200-mRNA-1 |
| chr4_1 | exon | 76297004 | 76297129 | 76297004 | ID=Msa0573200-mRNA-1:exon:26693;Parent=Msa0573200-mRNA-1 |
| chr4_1 | exon | 76297625 | 76297747 | 76297625 | ID=Msa0573200-mRNA-1:exon:26692;Parent=Msa0573200-mRNA-1 |
| chr4_1 | exon | 76298320 | 76298387 | 76298320 | ID=Msa0573200-mRNA-1:exon:26691;Parent=Msa0573200-mRNA-1 |
| chr4_1 | CDS | 76298320 | 76298387 | 76298320 | ID=Msa0573200-mRNA-1:cds;Parent=Msa0573200-mRNA-1 |
| chr4_1 | CDS | 76297625 | 76297747 | 76297625 | ID=Msa0573200-mRNA-1:cds;Parent=Msa0573200-mRNA-1 |
| chr4_1 | CDS | 76297004 | 76297129 | 76297004 | ID=Msa0573200-mRNA-1:cds;Parent=Msa0573200-mRNA-1 |
| chr4_1 | CDS | 76296799 | 76296979 | 76296799 | ID=Msa0573200-mRNA-1:cds;Parent=Msa0573200-mRNA-1 |
| chr4_1 | CDS | 76295062 | 76295143 | 76295062 | ID=Msa0573200-mRNA-1:cds;Parent=Msa0573200-mRNA-1 |
| chr4_1 | CDS | 76294026 | 76294138 | 76294026 | ID=Msa0573200-mRNA-1:cds;Parent=Msa0573200-mRNA-1 |
| chr4_1 | three_prime_UTR | 76293936 | 76294025 | 76293936 | ID=Msa0573200-mRNA-1:three_prime_utr;Parent=Msa0573200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
