AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0663390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0663390 MtrunA17_Chr4g0001231 97.460 433 11 0 1 433 194 626 0.0 845
Msa0663390 MtrunA17_Chr4g0070931 90.783 434 38 2 1 432 196 629 0.0 761
Msa0663390 MtrunA17_Chr4g0074301 90.300 433 40 2 2 432 197 629 0.0 749
Msa0663390 MtrunA17_Chr3g0111661 45.221 429 233 1 1 429 211 637 5.21e-123 371
Msa0663390 MtrunA17_Chr5g0435301 43.427 426 238 2 7 432 698 1120 5.62e-106 338
Msa0663390 MtrunA17_Chr4g0074271 81.773 203 34 1 1 200 195 397 7.53e-97 298
Msa0663390 MtrunA17_Chr4g0074271 86.765 68 9 0 357 424 383 450 1.52e-31 125
Msa0663390 MtrunA17_Chr2g0328251 40.406 443 226 5 9 421 248 682 1.29e-84 273
Msa0663390 MtrunA17_Chr2g0328241 39.953 428 233 5 9 421 248 666 3.76e-80 261
Msa0663390 MtrunA17_Chr2g0327251 37.559 426 203 5 9 421 181 556 2.81e-67 224
Msa0663390 MtrunA17_Chr4g0024031 36.383 459 228 7 9 431 238 668 3.11e-65 221
Msa0663390 MtrunA17_Chr4g0071151 44.444 261 114 4 189 431 4 251 4.99e-65 209
Msa0663390 MtrunA17_Chr3g0111741 50.685 219 104 4 215 432 123 338 3.35e-58 194
Msa0663390 MtrunA17_Chr2g0328231 46.025 239 110 5 198 421 120 354 3.98e-57 192
Msa0663390 MtrunA17_Chr3g0111731 43.363 226 114 5 208 432 2 214 1.46e-43 152
Msa0663390 MtrunA17_Chr3g0111691 54.545 77 34 1 356 432 15 90 1.04e-19 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0663390 AT1G15910.1 60.471 425 167 1 7 431 210 633 6.19e-177 509
Msa0663390 AT4G00380.2 59.529 425 171 1 7 431 183 606 5.86e-174 500
Msa0663390 AT4G00380.1 59.529 425 171 1 7 431 211 634 8.77e-174 501
Msa0663390 AT4G00380.3 59.529 425 171 1 7 431 211 634 8.77e-174 501
Msa0663390 AT1G80790.1 56.206 427 184 3 7 432 210 634 2.74e-142 421
Msa0663390 AT1G80790.2 56.206 427 184 3 7 432 210 634 2.74e-142 421
Msa0663390 AT3G48670.2 42.958 426 237 3 9 432 224 645 3.56e-104 323
Msa0663390 AT3G48670.1 42.958 426 237 3 9 432 224 645 3.56e-104 323
Msa0663390 AT3G48670.3 42.958 426 237 3 9 432 224 645 3.56e-104 323
Msa0663390 AT1G13790.2 42.308 416 229 3 9 422 318 724 1.51e-92 295
Msa0663390 AT1G13790.1 42.308 416 229 3 9 422 318 724 1.51e-92 295
Msa0663390 AT1G80790.3 57.308 260 110 1 7 266 210 468 9.64e-82 259
Msa0663390 AT3G12550.5 36.643 423 263 2 7 428 215 633 3.75e-78 254
Msa0663390 AT3G12550.4 36.557 424 263 2 7 428 215 634 1.84e-77 253
Msa0663390 AT3G12550.2 36.557 424 263 2 7 428 215 634 1.84e-77 253
Msa0663390 AT3G12550.1 36.557 424 263 2 7 428 215 634 1.84e-77 253
Msa0663390 AT5G59390.2 35.991 439 246 12 9 431 132 551 1.33e-65 220
Msa0663390 AT5G59390.4 35.991 439 246 12 9 431 132 551 1.33e-65 220
Msa0663390 AT5G59390.3 35.991 439 246 12 9 431 132 551 1.33e-65 220
Msa0663390 AT4G01780.1 33.803 426 183 7 9 432 142 470 7.80e-64 213
Msa0663390 AT5G59390.1 35.586 444 246 13 9 431 132 556 3.45e-63 213
Msa0663390 AT5G59390.5 35.586 444 246 13 9 431 132 556 3.45e-63 213
Msa0663390 AT4G01180.1 35.267 431 239 11 9 421 130 538 1.21e-59 204
Msa0663390 AT3G12550.3 32.945 343 226 1 7 349 215 553 1.05e-50 180
Msa0663390 AT3G29375.3 44.776 201 105 2 231 431 32 226 1.55e-47 163
Msa0663390 AT3G29375.1 44.776 201 105 2 231 431 155 349 3.69e-45 160
Msa0663390 AT3G29375.2 41.406 128 68 3 231 358 32 152 1.25e-18 83.6
Msa0663390 AT2G16490.1 43.243 74 42 0 358 431 75 148 4.89e-15 73.6

Find 160 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCTGTAACCACTTTAAA+AGG 0.096361 4_4:-2189971 None:intergenic
CAACTGAAGGATCTTGTTTA+AGG 0.147603 4_4:-2189231 None:intergenic
CTGTTGAGCTTTGCTCTTTA+TGG 0.185569 4_4:+2189918 Msa0663390:CDS
CTTGGTGCCAATATTAGTTT+TGG 0.243764 4_4:-2189816 None:intergenic
AGACTAAACGTTGTGGAAAA+AGG 0.264861 4_4:+2187757 Msa0663390:five_prime_UTR
ATGGAAATTGAAGAACTAAA+AGG 0.270508 4_4:+2189287 Msa0663390:CDS
GGAAGACAAAATAGAAAGTT+TGG 0.287888 4_4:+2189391 Msa0663390:CDS
ATAAGCAAATCACATGATTC+TGG 0.315654 4_4:+2187594 Msa0663390:five_prime_UTR
TACAAAGTGAAGAACAATAA+TGG 0.316359 4_4:+2187306 Msa0663390:five_prime_UTR
TTGGAATTCCATGGACTTGC+AGG 0.324273 4_4:+2187781 Msa0663390:exon
AATAGAAAGTTTGGAAGATA+TGG 0.336318 4_4:+2189400 Msa0663390:CDS
TTCTGATGAAGCTGGGATAA+AGG 0.336391 4_4:+2189895 Msa0663390:CDS
AAAGCAGGAATTCAAATATA+AGG 0.338005 4_4:+2187362 Msa0663390:five_prime_UTR
TGTGGAACTTCAAAGAAAAT+AGG 0.338398 4_4:+2190241 Msa0663390:CDS
ACTGGTGCCAAAACTAATAT+TGG 0.346735 4_4:+2189809 Msa0663390:CDS
AGAAAAGTTGAGTAATGAAT+TGG 0.351658 4_4:+2188249 Msa0663390:CDS
GAAATAATTAGTCAGAATAT+AGG 0.353567 4_4:-2191317 None:intergenic
GATGAAATTGCAGAGGAAAA+TGG 0.359851 4_4:-2186504 None:intergenic
CCTGTAGTTCATCATTGCTT+TGG 0.360050 4_4:-2189457 None:intergenic
CAGGACAGTTCAGAGATTTA+CGG 0.365740 4_4:+2187800 Msa0663390:CDS
TGAGGAGGTACGAAGGATAT+TGG 0.370766 4_4:+2188219 Msa0663390:CDS
CGATCAAGAGAGGCAGAAAC+TGG 0.373050 4_4:+2188333 Msa0663390:CDS
ATGAAGTATGAAACTGTTAC+TGG 0.375794 4_4:+2191370 Msa0663390:three_prime_UTR
CCAGCCCTTAACTCTTCATA+TGG 0.378071 4_4:-2187279 None:intergenic
AGAAACCATATGAAGAGTTA+AGG 0.381900 4_4:+2187274 Msa0663390:five_prime_UTR
TCTGCTCCTTTGAGGCCAAC+TGG 0.386894 4_4:-2189027 None:intergenic
CCAGTGGTGGGTATACTGTT+TGG 0.391573 4_4:+2190214 Msa0663390:CDS
CAGTGGTGGGTATACTGTTT+GGG 0.392443 4_4:+2190215 Msa0663390:CDS
ACAAAGTGAAGAACAATAAT+GGG 0.394132 4_4:+2187307 Msa0663390:five_prime_UTR
ATATAGCTGTCCAACGAAAA+TGG 0.395372 4_4:-2191203 None:intergenic
GATCTGTTGCAGCATGCATC+TGG 0.396114 4_4:+2187384 Msa0663390:five_prime_UTR
TCAGAAAAGGAACGTGAAAA+TGG 0.399265 4_4:-2186472 None:intergenic
AGCTATCTTCTGCTCCTTTG+AGG 0.404036 4_4:-2189035 None:intergenic
GGCTGTTCATACGTTCTTGA+TGG 0.404762 4_4:+2187653 Msa0663390:five_prime_UTR
TTAGTACCTCACGCTTGTTT+AGG 0.407923 4_4:-2188309 None:intergenic
ATAATTGTCCAGGGTCGATT+GGG 0.410920 4_4:+2187846 Msa0663390:CDS
GTCAAGGTCTCCCATCCTCT+TGG 0.419346 4_4:-2189834 None:intergenic
CAGGCTTGTTGAAGAGCAAA+AGG 0.422308 4_4:+2189072 Msa0663390:CDS
GAAGTACATCATATCTCAAT+CGG 0.422729 4_4:+2191164 Msa0663390:three_prime_UTR
CTTGTTTAGGTCTCTGCTCC+AGG 0.422956 4_4:-2188296 None:intergenic
TATTAAAACTCACTCCTCCT+AGG 0.429950 4_4:+2186424 Msa0663390:five_prime_UTR
TGGAAATTGAAGAACTAAAA+GGG 0.432185 4_4:+2189288 Msa0663390:CDS
CAGTTCAGAGATTTACGGTT+GGG 0.434103 4_4:+2187805 Msa0663390:CDS
TATAATTGTCCAGGGTCGAT+TGG 0.446459 4_4:+2187845 Msa0663390:CDS
ACTTCAACAATGACTGGAAT+GGG 0.453119 4_4:+2187700 Msa0663390:five_prime_UTR
CTGCAAGTCATGAAACATCT+TGG 0.454930 4_4:+2189314 Msa0663390:CDS
GAAACCATATGAAGAGTTAA+GGG 0.456039 4_4:+2187275 Msa0663390:five_prime_UTR
CAGTTTCTGCCTCTCTTGAT+CGG 0.457451 4_4:-2188332 None:intergenic
GAAGATGATTATAATTGTCC+AGG 0.464276 4_4:+2187836 Msa0663390:CDS
TCAAAGCCGGGCGAGGTACT+TGG 0.465289 4_4:-2187503 None:intergenic
TAGCTGATGAGAATGTCTTC+AGG 0.469727 4_4:+2189053 Msa0663390:CDS
CAACTGGAGTGATTGATTCC+TGG 0.474236 4_4:-2189011 None:intergenic
GGTATACTGTTTGGGAGCTG+TGG 0.476632 4_4:+2190223 Msa0663390:CDS
TACAAAAGCTGAAGAAGGAA+TGG 0.478989 4_4:+2190133 Msa0663390:CDS
TAATATCAATCTCATTTGCC+AGG 0.479312 4_4:-2187955 None:intergenic
GGAAGAGATGAATTCAGAGT+TGG 0.479922 4_4:+2189370 Msa0663390:CDS
ATCACTCCAGTTGGCCTCAA+AGG 0.480055 4_4:+2189021 Msa0663390:CDS
AAAACAGAAGGCAAACCATC+TGG 0.480375 4_4:+2187437 Msa0663390:five_prime_UTR
TCCAAGTTGAGAACTACGTT+TGG 0.494414 4_4:+2187547 Msa0663390:five_prime_UTR
TTATAGACTTCAACAATGAC+TGG 0.495035 4_4:+2187694 Msa0663390:five_prime_UTR
ACAAAAGCTGAAGAAGGAAT+GGG 0.498002 4_4:+2190134 Msa0663390:CDS
ATCTCAACAAGATGCAGTAT+AGG 0.500867 4_4:+2187987 Msa0663390:CDS
ATGGAAGCTCAGCTCAGAAA+AGG 0.500964 4_4:-2186485 None:intergenic
ATTAAAACTCACTCCTCCTA+GGG 0.504234 4_4:+2186425 Msa0663390:five_prime_UTR
TCTCTGTAACCACTTTAAAA+GGG 0.509171 4_4:-2189970 None:intergenic
ACTTAGGTGTCCGTATTGCT+CGG 0.510947 4_4:+2187332 Msa0663390:five_prime_UTR
AACTACGTTTGGCCGTGGAC+AGG 0.513586 4_4:+2187558 Msa0663390:five_prime_UTR
GAATTTAACGCTTATTGTCA+AGG 0.513944 4_4:+2189430 Msa0663390:CDS
TGAGCTTTGCTCTTTATGGC+AGG 0.521055 4_4:+2189922 Msa0663390:CDS
CTAATTTAAGTCTGAACTGA+AGG 0.521326 4_4:-2191267 None:intergenic
TTCAGTAGAAAGATAGAAGT+AGG 0.523707 4_4:+2191232 Msa0663390:three_prime_UTR
TAATATTGGCACCAAGAGGA+TGG 0.524177 4_4:+2189823 Msa0663390:CDS
TATGTCCTTGAGTAGGATGC+TGG 0.524242 4_4:+2188024 Msa0663390:CDS
CCAAACAGTATACCCACCAC+TGG 0.525403 4_4:-2190214 None:intergenic
CCAAAGCAATGATGAACTAC+AGG 0.526461 4_4:+2189457 Msa0663390:CDS
CTTAAACAAGATCCTTCAGT+TGG 0.526740 4_4:+2189232 Msa0663390:CDS
ACGTAGTTCTCAACTTGGAC+AGG 0.526836 4_4:-2187543 None:intergenic
GCCAAACGTAGTTCTCAACT+TGG 0.528155 4_4:-2187548 None:intergenic
TGAACTGTCCTGCAAGTCCA+TGG 0.528763 4_4:-2187789 None:intergenic
AAGAGAGGAGGATAGGCAAA+AGG 0.532512 4_4:+2190324 Msa0663390:exon
AAATAGCATTGTGGAAAACC+TGG 0.534545 4_4:+2187937 Msa0663390:CDS
GACTTCAACAATGACTGGAA+TGG 0.535886 4_4:+2187699 Msa0663390:five_prime_UTR
TCAGCCTTCCTTTGTTGCGA+AGG 0.537542 4_4:-2187874 None:intergenic
CTTAGGTGTCCGTATTGCTC+GGG 0.537566 4_4:+2187333 Msa0663390:five_prime_UTR
ATCTGGAGTAGGCAAAGGTT+CGG 0.537904 4_4:+2187401 Msa0663390:five_prime_UTR
ATCATATCTCAATCGGGAGG+TGG 0.539320 4_4:+2191171 Msa0663390:three_prime_UTR
GATGGGAGACCTTGACCAGA+AGG 0.539667 4_4:+2189841 Msa0663390:CDS
GTTCATACGTTCTTGATGGA+TGG 0.543612 4_4:+2187657 Msa0663390:five_prime_UTR
TTCATTATAAACAAGTCAAG+TGG 0.544874 4_4:-2191352 None:intergenic
AAATGAGGAAGCTTGATACC+TGG 0.545605 4_4:+2188278 Msa0663390:CDS
TCCAAACTACCAGAGAGAAA+AGG 0.547284 4_4:+2189202 Msa0663390:intron
TTGAGAACTACGTTTGGCCG+TGG 0.547439 4_4:+2187553 Msa0663390:five_prime_UTR
GAAACTACAAAAGCTGAAGA+AGG 0.547462 4_4:+2190128 Msa0663390:CDS
CCATATGAAGAGTTAAGGGC+TGG 0.547915 4_4:+2187279 Msa0663390:five_prime_UTR
AAACAGAAGCACAAAACAGA+AGG 0.549041 4_4:+2187425 Msa0663390:five_prime_UTR
TGTCCTTCCAGAAAGACTCC+AGG 0.550329 4_4:+2188993 Msa0663390:intron
ATGCAAGTGAGCTTGAGAAA+TGG 0.551886 4_4:+2187730 Msa0663390:five_prime_UTR
ACGACAGCTAAGGTCAAAGC+CGG 0.553034 4_4:-2187516 None:intergenic
ATTTGCTAAGTACAAACCAT+TGG 0.554128 4_4:+2187632 Msa0663390:five_prime_UTR
AGCAGACCAAGTACCTCGCC+CGG 0.554305 4_4:+2187497 Msa0663390:five_prime_UTR
ACTGGAAGAGGACAAGAAGA+AGG 0.555312 4_4:+2188351 Msa0663390:CDS
TGATTCTGGATACTTGCAAA+AGG 0.555382 4_4:+2187608 Msa0663390:five_prime_UTR
AGTTCTCAACTTGGACAGGT+TGG 0.556864 4_4:-2187539 None:intergenic
GAAACTGTTACTGGTTATCA+CGG 0.561539 4_4:+2191379 Msa0663390:three_prime_UTR
GCTAAGGTCAAAGCCGGGCG+AGG 0.561717 4_4:-2187510 None:intergenic
AGAAGTGATCACTTATATTG+TGG 0.563683 4_4:+2190278 Msa0663390:CDS
TTGCAGCATGCATCTGGAGT+AGG 0.566883 4_4:+2187390 Msa0663390:five_prime_UTR
TAAGCGCAAGAGAGGAGGAT+AGG 0.567186 4_4:+2190317 Msa0663390:CDS
CAGGAATCAATCACTCCAGT+TGG 0.571555 4_4:+2189012 Msa0663390:CDS
ATGATGAACTACAGGAAGCT+CGG 0.574508 4_4:+2189465 Msa0663390:CDS
AGAACAATAATGGGACACTT+AGG 0.574673 4_4:+2187316 Msa0663390:five_prime_UTR
AAGTACATCATATCTCAATC+GGG 0.577063 4_4:+2191165 Msa0663390:three_prime_UTR
AATTGAATGCACGAAACCCT+AGG 0.578610 4_4:-2186441 None:intergenic
AGGTACTCCCCAATCGACCC+TGG 0.579229 4_4:-2187854 None:intergenic
AAAACTTTGCAAGAGCCAGA+TGG 0.582131 4_4:-2187452 None:intergenic
AACGAGTACAACCCCAGTGG+TGG 0.585705 4_4:+2190201 Msa0663390:CDS
AATATTGGCACCAAGAGGAT+GGG 0.586149 4_4:+2189824 Msa0663390:CDS
GACAGGTTGGACGACAGCTA+AGG 0.586592 4_4:-2187526 None:intergenic
AGTACCTTCGCAACAAAGGA+AGG 0.587192 4_4:+2187870 Msa0663390:CDS
AGAGAGGCAGAAACTGGAAG+AGG 0.587763 4_4:+2188339 Msa0663390:CDS
AAAATGTGAAGAACTCAGCT+TGG 0.590276 4_4:+2189945 Msa0663390:CDS
CAAACAGTATACCCACCACT+GGG 0.590617 4_4:-2190213 None:intergenic
GGGGAGTACCTTCGCAACAA+AGG 0.594476 4_4:+2187866 Msa0663390:CDS
CTCCTCCAGCATCCTACTCA+AGG 0.596087 4_4:-2188029 None:intergenic
CAACTTAAGCGCAAGAGAGG+AGG 0.597370 4_4:+2190312 Msa0663390:CDS
GATCAGTGAGTCTGAGATCG+AGG 0.600157 4_4:+2187242 Msa0663390:five_prime_UTR
AAGCAACTTAAGCGCAAGAG+AGG 0.605662 4_4:+2190309 Msa0663390:CDS
CGACAGCTAAGGTCAAAGCC+GGG 0.609400 4_4:-2187515 None:intergenic
CATGCATCTGGAGTAGGCAA+AGG 0.611854 4_4:+2187396 Msa0663390:five_prime_UTR
AGAAGACTATGTCCTTGAGT+AGG 0.612892 4_4:+2188017 Msa0663390:CDS
ACAGTTCAGAGATTTACGGT+TGG 0.615927 4_4:+2187804 Msa0663390:CDS
GTTATCACGGTTATCGCATA+CGG 0.618789 4_4:+2191392 Msa0663390:three_prime_UTR
GAACTTCAAAGAAAATAGGA+AGG 0.621964 4_4:+2190245 Msa0663390:CDS
AGGTACTAACCGATCAAGAG+AGG 0.623269 4_4:+2188323 Msa0663390:CDS
AAGATGATTATAATTGTCCA+GGG 0.627300 4_4:+2187837 Msa0663390:CDS
CATGCAGCGTAAAGCTCGTG+AGG 0.627326 4_4:+2188201 Msa0663390:CDS
TTGACAAGTATGCCTGTCCA+CGG 0.630837 4_4:-2187570 None:intergenic
AAACTACCAGAGAGAAAAGG+AGG 0.630982 4_4:+2189205 Msa0663390:intron
TAATTGTCCAGGGTCGATTG+GGG 0.634670 4_4:+2187847 Msa0663390:CDS
TGGTTTGAGACTAAACGTTG+TGG 0.637320 4_4:+2187750 Msa0663390:five_prime_UTR
GTCCTTGAGTAGGATGCTGG+AGG 0.639598 4_4:+2188027 Msa0663390:CDS
GGGTTAAATGAAATGCTGAC+TGG 0.640070 4_4:+2189791 Msa0663390:CDS
TTCGCAACAAAGGAAGGCTG+AGG 0.640972 4_4:+2187876 Msa0663390:CDS
AAGCTCGTGAGGAGGTACGA+AGG 0.645630 4_4:+2188212 Msa0663390:CDS
AAGAACGTATGAACAGCCAA+TGG 0.648751 4_4:-2187648 None:intergenic
CTACCAGAGAGAAAAGGAGG+AGG 0.652051 4_4:+2189208 Msa0663390:intron
TCTTGGAGATCAAGATGATG+CGG 0.666276 4_4:+2189331 Msa0663390:CDS
ACGAGTACAACCCCAGTGGT+GGG 0.666856 4_4:+2190202 Msa0663390:CDS
CAAAAGCTGAAGAAGGAATG+GGG 0.672943 4_4:+2190135 Msa0663390:CDS
TCAAAGCAGAAATAGCATTG+TGG 0.673917 4_4:+2187928 Msa0663390:CDS
AAACTAATATTGGCACCAAG+AGG 0.676823 4_4:+2189819 Msa0663390:CDS
TACATCATATCTCAATCGGG+AGG 0.678077 4_4:+2191168 Msa0663390:three_prime_UTR
GCAGCGTAAAGCTCGTGAGG+AGG 0.682044 4_4:+2188204 Msa0663390:CDS
TTACAGCGATGAAATTGCAG+AGG 0.696307 4_4:-2186511 None:intergenic
CAGAGACCTAAACAAGCGTG+AGG 0.704526 4_4:+2188303 Msa0663390:CDS
CTTGATGGATGGTAACTGCG+TGG 0.712841 4_4:+2187668 Msa0663390:five_prime_UTR
TGAATGCACGAAACCCTAGG+AGG 0.720425 4_4:-2186438 None:intergenic
TACAGAGAATGATAACCATG+TGG 0.726744 4_4:+2189985 Msa0663390:CDS
AAACAGTATACCCACCACTG+GGG 0.786062 4_4:-2190212 None:intergenic
GTTAACGAGTACAACCCCAG+TGG 0.812173 4_4:+2190198 Msa0663390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATCAATGTAATATATA+TGG + chr4_4:2188722-2188741 Msa0663390:intron 10.0%
!!! GTGATATTAAATTTCATTTT+AGG + chr4_4:2186931-2186950 Msa0663390:intron 15.0%
!!! CAGTTAAAAATATTTGAAAT+GGG - chr4_4:2188411-2188430 None:intergenic 15.0%
!!! AGTAACATTTCTTTTTATAT+AGG - chr4_4:2189543-2189562 None:intergenic 15.0%
!!! TTTCAAATTTCTATTGTTTT+AGG + chr4_4:2189769-2189788 Msa0663390:intron 15.0%
!!! TTCAAATTTCTATTGTTTTA+GGG + chr4_4:2189770-2189789 Msa0663390:intron 15.0%
!! AAATAGTGTAATAATTAACA+TGG + chr4_4:2190060-2190079 Msa0663390:intron 15.0%
!!! GTTTATTTATTTTATTCCAA+TGG + chr4_4:2191420-2191439 Msa0663390:three_prime_UTR 15.0%
!! GAAGAATTCAAAGAAAAAAA+GGG - chr4_4:2186559-2186578 None:intergenic 20.0%
!! AGAAGAATTCAAAGAAAAAA+AGG - chr4_4:2186560-2186579 None:intergenic 20.0%
!! AACAAAAACAAATACTGTAT+TGG - chr4_4:2186655-2186674 None:intergenic 20.0%
!!! TAAGTTACATTTTAAAATGC+AGG + chr4_4:2186876-2186895 Msa0663390:intron 20.0%
!!! TTAAATTTCATTTTAGGTCA+TGG + chr4_4:2186937-2186956 Msa0663390:intron 20.0%
!!! AAAAAAATGAGACATTTTTG+TGG - chr4_4:2188166-2188185 None:intergenic 20.0%
!! GCAGTTAAAAATATTTGAAA+TGG - chr4_4:2188412-2188431 None:intergenic 20.0%
!!! CACTTTTTTATTCAAATCAA+GGG - chr4_4:2188588-2188607 None:intergenic 20.0%
!!! AGCACATATGTTTTTTTATA+TGG - chr4_4:2188871-2188890 None:intergenic 20.0%
!! AAATTTGAAAAAAATGAGAG+GGG - chr4_4:2189759-2189778 None:intergenic 20.0%
!! GAAATTTGAAAAAAATGAGA+GGG - chr4_4:2189760-2189779 None:intergenic 20.0%
!! AGAAATTTGAAAAAAATGAG+AGG - chr4_4:2189761-2189780 None:intergenic 20.0%
!!! TCAAATTTCTATTGTTTTAG+GGG + chr4_4:2189771-2189790 Msa0663390:intron 20.0%
!! AAATGTAACAACATTCTATT+TGG + chr4_4:2190553-2190572 Msa0663390:intron 20.0%
!! AAAGTTTATAAATGAAAAGC+TGG + chr4_4:2190627-2190646 Msa0663390:intron 20.0%
!!! TAATTTTGAAAAGCAAAAGA+TGG + chr4_4:2190958-2190977 Msa0663390:intron 20.0%
!!! AAACTTGTTTAGAATTTAAC+AGG - chr4_4:2191123-2191142 None:intergenic 20.0%
!! GAAATAATTAGTCAGAATAT+AGG - chr4_4:2191320-2191339 None:intergenic 20.0%
! AGTTGCTTATAAGCTAATTT+AGG + chr4_4:2186697-2186716 Msa0663390:intron 25.0%
!!! TACATTTTAAAATGCAGGAA+TGG + chr4_4:2186881-2186900 Msa0663390:intron 25.0%
!! AAAAAAAGCATAGCTAAGAA+TGG - chr4_4:2187021-2187040 None:intergenic 25.0%
! TACAAAGTGAAGAACAATAA+TGG + chr4_4:2187306-2187325 Msa0663390:five_prime_UTR 25.0%
! ACAAAGTGAAGAACAATAAT+GGG + chr4_4:2187307-2187326 Msa0663390:five_prime_UTR 25.0%
! AAAGCAGGAATTCAAATATA+AGG + chr4_4:2187362-2187381 Msa0663390:five_prime_UTR 25.0%
! AAGATGATTATAATTGTCCA+GGG + chr4_4:2187837-2187856 Msa0663390:CDS 25.0%
!! TTTGCCTTATTGTATAGAAT+AGG + chr4_4:2188111-2188130 Msa0663390:intron 25.0%
!! TTGCCTTATTGTATAGAATA+GGG + chr4_4:2188112-2188131 Msa0663390:intron 25.0%
! AGAAAAGTTGAGTAATGAAT+TGG + chr4_4:2188249-2188268 Msa0663390:CDS 25.0%
! ATGAATTGGATGAAAAAATG+AGG + chr4_4:2188263-2188282 Msa0663390:CDS 25.0%
!!! GCACTTTTTTATTCAAATCA+AGG - chr4_4:2188589-2188608 None:intergenic 25.0%
! AAATGAATCCCAACTTTAAT+TGG + chr4_4:2188636-2188655 Msa0663390:intron 25.0%
!!! AAAAGCTTTTGATTATTGTG+AGG + chr4_4:2188699-2188718 Msa0663390:intron 25.0%
! ATTTCAACTCTACATAAATG+AGG - chr4_4:2188762-2188781 None:intergenic 25.0%
!! TTCCATTTCCAATTTTTGTT+TGG - chr4_4:2189273-2189292 None:intergenic 25.0%
! ATGGAAATTGAAGAACTAAA+AGG + chr4_4:2189287-2189306 Msa0663390:CDS 25.0%
! TGGAAATTGAAGAACTAAAA+GGG + chr4_4:2189288-2189307 Msa0663390:CDS 25.0%
! AATAGAAAGTTTGGAAGATA+TGG + chr4_4:2189400-2189419 Msa0663390:CDS 25.0%
!! AAATCTTATTTCCTAAAGAG+AGG - chr4_4:2189685-2189704 None:intergenic 25.0%
!! ATTACACTATTTCTCTATTG+AGG - chr4_4:2190052-2190071 None:intergenic 25.0%
! ACATGGTAATATTGTTGTAT+TGG + chr4_4:2190077-2190096 Msa0663390:intron 25.0%
!! CACTGACTAAAATAGTAATT+TGG + chr4_4:2190409-2190428 Msa0663390:intron 25.0%
!! AACAACTTTTAGACTTTTGT+CGG + chr4_4:2190472-2190491 Msa0663390:intron 25.0%
! TAAGTTAACTAATAGCTACT+AGG + chr4_4:2190595-2190614 Msa0663390:intron 25.0%
! AAGTGGTTGTTAGAATTAAT+TGG + chr4_4:2190663-2190682 Msa0663390:intron 25.0%
! ACATGAAAGATATGTTCATA+TGG + chr4_4:2190711-2190730 Msa0663390:intron 25.0%
! TTACTAAAAGCTTTACCAAA+AGG + chr4_4:2190766-2190785 Msa0663390:intron 25.0%
!! TAAACTTTTGTCATTCCTTT+TGG - chr4_4:2190784-2190803 None:intergenic 25.0%
! AACAAAAGAGAGAAAAAAAC+TGG - chr4_4:2191016-2191035 None:intergenic 25.0%
!!! CTTTTGTTTCTTACTCATAA+TGG + chr4_4:2191028-2191047 Msa0663390:intron 25.0%
! ATGGAAAAGTTTCTGATATT+TGG + chr4_4:2191047-2191066 Msa0663390:intron 25.0%
! TTCTAAACAAGTTTATCTTG+AGG + chr4_4:2191129-2191148 Msa0663390:intron 25.0%
!!! CTTTTTTATCTTTTGTCGAT+TGG + chr4_4:2191290-2191309 Msa0663390:three_prime_UTR 25.0%
! TTCATTATAAACAAGTCAAG+TGG - chr4_4:2191355-2191374 None:intergenic 25.0%
!!! TTGTTGCTGAGTTTTTTCTT+CGG + chr4_4:2186598-2186617 Msa0663390:intron 30.0%
! GTCATGGTTTATGTGATTTT+GGG + chr4_4:2186953-2186972 Msa0663390:intron 30.0%
! TCATGGTTTATGTGATTTTG+GGG + chr4_4:2186954-2186973 Msa0663390:intron 30.0%
!!! TAGCTATGCTTTTTTTGTGA+TGG + chr4_4:2187025-2187044 Msa0663390:intron 30.0%
!!! AGCTATGCTTTTTTTGTGAT+GGG + chr4_4:2187026-2187045 Msa0663390:intron 30.0%
!!! TTTTTTTGTGATGGGACTAA+GGG + chr4_4:2187034-2187053 Msa0663390:intron 30.0%
! ATTGTATGCCCTTTTTCTTT+TGG + chr4_4:2187132-2187151 Msa0663390:intron 30.0%
! TTGTATGCCCTTTTTCTTTT+GGG + chr4_4:2187133-2187152 Msa0663390:intron 30.0%
AGAAACCATATGAAGAGTTA+AGG + chr4_4:2187274-2187293 Msa0663390:five_prime_UTR 30.0%
GAAACCATATGAAGAGTTAA+GGG + chr4_4:2187275-2187294 Msa0663390:five_prime_UTR 30.0%
ATAAGCAAATCACATGATTC+TGG + chr4_4:2187594-2187613 Msa0663390:five_prime_UTR 30.0%
! ATTTGCTAAGTACAAACCAT+TGG + chr4_4:2187632-2187651 Msa0663390:five_prime_UTR 30.0%
TTATAGACTTCAACAATGAC+TGG + chr4_4:2187694-2187713 Msa0663390:five_prime_UTR 30.0%
GAAGATGATTATAATTGTCC+AGG + chr4_4:2187836-2187855 Msa0663390:CDS 30.0%
TAATATCAATCTCATTTGCC+AGG - chr4_4:2187958-2187977 None:intergenic 30.0%
! TGCCTTATTGTATAGAATAG+GGG + chr4_4:2188113-2188132 Msa0663390:intron 30.0%
!!! TCATTTTTTTCTCAGAGTCA+AGG + chr4_4:2188176-2188195 Msa0663390:intron 30.0%
!!! CAAATTTTTTGCAAGGACAA+TGG - chr4_4:2188462-2188481 None:intergenic 30.0%
!!! GACAGATCAAATTTTTTGCA+AGG - chr4_4:2188469-2188488 None:intergenic 30.0%
ATTTGATCTGTCTTTCTTTG+TGG + chr4_4:2188477-2188496 Msa0663390:intron 30.0%
GATTTGAATAACAATGTCCT+TGG + chr4_4:2188559-2188578 Msa0663390:intron 30.0%
TTCATTTAAAGAGAGTCAGT+AGG - chr4_4:2188623-2188642 None:intergenic 30.0%
! GCATTTTATATATTAGTGCG+TGG + chr4_4:2188811-2188830 Msa0663390:intron 30.0%
ACTGATGATTCAAAGTCTTA+AGG - chr4_4:2188934-2188953 None:intergenic 30.0%
! TTTTCATAACCAAGTGAGTA+GGG - chr4_4:2189102-2189121 None:intergenic 30.0%
TTAAAGACATTCACAATGGA+TGG - chr4_4:2189170-2189189 None:intergenic 30.0%
TCAGTTAAAGACATTCACAA+TGG - chr4_4:2189174-2189193 None:intergenic 30.0%
ACTAGATGCCAAACAAAAAT+TGG + chr4_4:2189262-2189281 Msa0663390:CDS 30.0%
TGCCAAACAAAAATTGGAAA+TGG + chr4_4:2189268-2189287 Msa0663390:CDS 30.0%
TGCGGCTATTAAGAAAAAAA+TGG + chr4_4:2189349-2189368 Msa0663390:CDS 30.0%
GGAAGACAAAATAGAAAGTT+TGG + chr4_4:2189391-2189410 Msa0663390:CDS 30.0%
GAATTTAACGCTTATTGTCA+AGG + chr4_4:2189430-2189449 Msa0663390:CDS 30.0%
TGAAGAATACACGAAGATAA+AGG - chr4_4:2189588-2189607 None:intergenic 30.0%
TTCAAGATAACCAACTAACA+AGG + chr4_4:2189604-2189623 Msa0663390:intron 30.0%
! AGAAGAAAATCTTTTCTTGC+AGG - chr4_4:2189879-2189898 None:intergenic 30.0%
! TCTCTGTAACCACTTTAAAA+GGG - chr4_4:2189973-2189992 None:intergenic 30.0%
TTCTCTGTAACCACTTTAAA+AGG - chr4_4:2189974-2189993 None:intergenic 30.0%
! GTACTCGTTAACTTCTTTTA+AGG - chr4_4:2190190-2190209 None:intergenic 30.0%
TGTGGAACTTCAAAGAAAAT+AGG + chr4_4:2190241-2190260 Msa0663390:CDS 30.0%
GAACTTCAAAGAAAATAGGA+AGG + chr4_4:2190245-2190264 Msa0663390:CDS 30.0%
AGAAGTGATCACTTATATTG+TGG + chr4_4:2190278-2190297 Msa0663390:CDS 30.0%
!! ATATCAATGCAGTTCTAAAC+AGG - chr4_4:2190375-2190394 None:intergenic 30.0%
! ACAACTTTTAGACTTTTGTC+GGG + chr4_4:2190473-2190492 Msa0663390:intron 30.0%
CAAATATGCTAACAAGTCTT+TGG + chr4_4:2190813-2190832 Msa0663390:intron 30.0%
TTATTAAATCGCTGCATTGA+CGG + chr4_4:2190883-2190902 Msa0663390:intron 30.0%
GAAGTACATCATATCTCAAT+CGG + chr4_4:2191164-2191183 Msa0663390:three_prime_UTR 30.0%
AAGTACATCATATCTCAATC+GGG + chr4_4:2191165-2191184 Msa0663390:three_prime_UTR 30.0%
TTCAGTAGAAAGATAGAAGT+AGG + chr4_4:2191232-2191251 Msa0663390:three_prime_UTR 30.0%
! ATAGAAGTAGGACATTTTCA+TGG + chr4_4:2191244-2191263 Msa0663390:three_prime_UTR 30.0%
CTAATTTAAGTCTGAACTGA+AGG - chr4_4:2191270-2191289 None:intergenic 30.0%
ATGAAGTATGAAACTGTTAC+TGG + chr4_4:2191370-2191389 Msa0663390:three_prime_UTR 30.0%
ATGTAAAAAAAGGCAACCAT+TGG - chr4_4:2191439-2191458 None:intergenic 30.0%
TATTAAAACTCACTCCTCCT+AGG + chr4_4:2186424-2186443 Msa0663390:five_prime_UTR 35.0%
ATTAAAACTCACTCCTCCTA+GGG + chr4_4:2186425-2186444 Msa0663390:five_prime_UTR 35.0%
TCAGAAAAGGAACGTGAAAA+TGG - chr4_4:2186475-2186494 None:intergenic 35.0%
GATGAAATTGCAGAGGAAAA+TGG - chr4_4:2186507-2186526 None:intergenic 35.0%
! GGTCATGGTTTATGTGATTT+TGG + chr4_4:2186952-2186971 Msa0663390:intron 35.0%
!!! CTTTTTTTGTGATGGGACTA+AGG + chr4_4:2187033-2187052 Msa0663390:intron 35.0%
AAATGCAGTCTGCTACTAAA+TGG - chr4_4:2187087-2187106 None:intergenic 35.0%
! AGAACAATAATGGGACACTT+AGG + chr4_4:2187316-2187335 Msa0663390:five_prime_UTR 35.0%
! TTTTTCTTTCCCGAGCAATA+CGG - chr4_4:2187345-2187364 None:intergenic 35.0%
! AAACAGAAGCACAAAACAGA+AGG + chr4_4:2187425-2187444 Msa0663390:five_prime_UTR 35.0%
TGATTCTGGATACTTGCAAA+AGG + chr4_4:2187608-2187627 Msa0663390:five_prime_UTR 35.0%
ACTTCAACAATGACTGGAAT+GGG + chr4_4:2187700-2187719 Msa0663390:five_prime_UTR 35.0%
AGACTAAACGTTGTGGAAAA+AGG + chr4_4:2187757-2187776 Msa0663390:five_prime_UTR 35.0%
AAACGTTGTGGAAAAAGGAT+TGG + chr4_4:2187762-2187781 Msa0663390:five_prime_UTR 35.0%
GAAAAAGGATTGGAATTCCA+TGG + chr4_4:2187772-2187791 Msa0663390:exon 35.0%
TCAAAGCAGAAATAGCATTG+TGG + chr4_4:2187928-2187947 Msa0663390:CDS 35.0%
AAATAGCATTGTGGAAAACC+TGG + chr4_4:2187937-2187956 Msa0663390:CDS 35.0%
ATCTCAACAAGATGCAGTAT+AGG + chr4_4:2187987-2188006 Msa0663390:CDS 35.0%
! CTTCACAATGCTTTTGTTGA+AGG + chr4_4:2188061-2188080 Msa0663390:CDS 35.0%
! GCCTTATTGTATAGAATAGG+GGG + chr4_4:2188114-2188133 Msa0663390:intron 35.0%
TCCCCCTATTCTATACAATA+AGG - chr4_4:2188118-2188137 None:intergenic 35.0%
GATCAACCAAGAACATTAGT+AGG - chr4_4:2188506-2188525 None:intergenic 35.0%
GATTTGACTAACAATGTCCT+TGG + chr4_4:2188528-2188547 Msa0663390:intron 35.0%
ATTCAAATCAAGAGCAACCA+AGG - chr4_4:2188548-2188567 None:intergenic 35.0%
! GCTTTTAGCATATAGACTCT+GGG - chr4_4:2188685-2188704 None:intergenic 35.0%
! AGCTTTTAGCATATAGACTC+TGG - chr4_4:2188686-2188705 None:intergenic 35.0%
GCATGTAAAGGTTAGAAAGT+GGG - chr4_4:2188903-2188922 None:intergenic 35.0%
AGCATGTAAAGGTTAGAAAG+TGG - chr4_4:2188904-2188923 None:intergenic 35.0%
TTCTAACCTTTACATGCTTG+AGG + chr4_4:2188906-2188925 Msa0663390:intron 35.0%
! CTTTTCATAACCAAGTGAGT+AGG - chr4_4:2189103-2189122 None:intergenic 35.0%
GTGAATGTCTTTAACTGATG+TGG + chr4_4:2189176-2189195 Msa0663390:intron 35.0%
! CAACTGAAGGATCTTGTTTA+AGG - chr4_4:2189234-2189253 None:intergenic 35.0%
CTTAAACAAGATCCTTCAGT+TGG + chr4_4:2189232-2189251 Msa0663390:CDS 35.0%
ACACGAAGATAAAGGTTAGA+AGG - chr4_4:2189580-2189599 None:intergenic 35.0%
AATCTATGCACCTTGTTAGT+TGG - chr4_4:2189617-2189636 None:intergenic 35.0%
! TCTTATTTCCTAAAGAGAGG+TGG - chr4_4:2189682-2189701 None:intergenic 35.0%
GTTCTGCTGTGAATATATTG+TGG + chr4_4:2189718-2189737 Msa0663390:intron 35.0%
! ACTGGTGCCAAAACTAATAT+TGG + chr4_4:2189809-2189828 Msa0663390:CDS 35.0%
!!! CTTGGTGCCAATATTAGTTT+TGG - chr4_4:2189819-2189838 None:intergenic 35.0%
AAACTAATATTGGCACCAAG+AGG + chr4_4:2189819-2189838 Msa0663390:CDS 35.0%
! AGATTTTCTTCTGATGAAGC+TGG + chr4_4:2189887-2189906 Msa0663390:CDS 35.0%
! GATTTTCTTCTGATGAAGCT+GGG + chr4_4:2189888-2189907 Msa0663390:CDS 35.0%
AAAATGTGAAGAACTCAGCT+TGG + chr4_4:2189945-2189964 Msa0663390:CDS 35.0%
TACAGAGAATGATAACCATG+TGG + chr4_4:2189985-2190004 Msa0663390:CDS 35.0%
! AAAAACAGAGCATGGCTTTA+TGG - chr4_4:2190017-2190036 None:intergenic 35.0%
GAAACTACAAAAGCTGAAGA+AGG + chr4_4:2190128-2190147 Msa0663390:CDS 35.0%
TACAAAAGCTGAAGAAGGAA+TGG + chr4_4:2190133-2190152 Msa0663390:CDS 35.0%
ACAAAAGCTGAAGAAGGAAT+GGG + chr4_4:2190134-2190153 Msa0663390:CDS 35.0%
TTAGTCAGTGAAGCTATCAA+TGG - chr4_4:2190399-2190418 None:intergenic 35.0%
ATGCAGCGATTTAATAACAC+AGG - chr4_4:2190880-2190899 None:intergenic 35.0%
! TATTAAATCGCTGCATTGAC+GGG + chr4_4:2190884-2190903 Msa0663390:intron 35.0%
CAAAATTATCCATGACAGAC+AGG - chr4_4:2190946-2190965 None:intergenic 35.0%
! GAAACTATGACCATTTTCGT+TGG + chr4_4:2191193-2191212 Msa0663390:three_prime_UTR 35.0%
ATATAGCTGTCCAACGAAAA+TGG - chr4_4:2191206-2191225 None:intergenic 35.0%
! GAAACTGTTACTGGTTATCA+CGG + chr4_4:2191379-2191398 Msa0663390:three_prime_UTR 35.0%
CCTGGCATACATGTAAAAAA+AGG - chr4_4:2191449-2191468 None:intergenic 35.0%
!!! CCTTTTTTTACATGTATGCC+AGG + chr4_4:2191446-2191465 Msa0663390:three_prime_UTR 35.0%
AATTGAATGCACGAAACCCT+AGG - chr4_4:2186444-2186463 None:intergenic 40.0%
TTACAGCGATGAAATTGCAG+AGG - chr4_4:2186514-2186533 None:intergenic 40.0%
GCACTCTCCCAAAAGAAAAA+GGG - chr4_4:2187143-2187162 None:intergenic 40.0%
TGCACTCTCCCAAAAGAAAA+AGG - chr4_4:2187144-2187163 None:intergenic 40.0%
! CATTTTTCGCACAGCTTCAA+TGG + chr4_4:2187194-2187213 Msa0663390:intron 40.0%
AAAACAGAAGGCAAACCATC+TGG + chr4_4:2187437-2187456 Msa0663390:five_prime_UTR 40.0%
AAAACTTTGCAAGAGCCAGA+TGG - chr4_4:2187455-2187474 None:intergenic 40.0%
! TGGCTCTTGCAAAGTTTTTG+AGG + chr4_4:2187457-2187476 Msa0663390:five_prime_UTR 40.0%
! TCCAAGTTGAGAACTACGTT+TGG + chr4_4:2187547-2187566 Msa0663390:five_prime_UTR 40.0%
AAGAACGTATGAACAGCCAA+TGG - chr4_4:2187651-2187670 None:intergenic 40.0%
GTTCATACGTTCTTGATGGA+TGG + chr4_4:2187657-2187676 Msa0663390:five_prime_UTR 40.0%
GACTTCAACAATGACTGGAA+TGG + chr4_4:2187699-2187718 Msa0663390:five_prime_UTR 40.0%
ATGCAAGTGAGCTTGAGAAA+TGG + chr4_4:2187730-2187749 Msa0663390:five_prime_UTR 40.0%
! TGGTTTGAGACTAAACGTTG+TGG + chr4_4:2187750-2187769 Msa0663390:five_prime_UTR 40.0%
CAGGACAGTTCAGAGATTTA+CGG + chr4_4:2187800-2187819 Msa0663390:CDS 40.0%
ACAGTTCAGAGATTTACGGT+TGG + chr4_4:2187804-2187823 Msa0663390:CDS 40.0%
CAGTTCAGAGATTTACGGTT+GGG + chr4_4:2187805-2187824 Msa0663390:CDS 40.0%
TATAATTGTCCAGGGTCGAT+TGG + chr4_4:2187845-2187864 Msa0663390:CDS 40.0%
ATAATTGTCCAGGGTCGATT+GGG + chr4_4:2187846-2187865 Msa0663390:CDS 40.0%
AGAAGACTATGTCCTTGAGT+AGG + chr4_4:2188017-2188036 Msa0663390:CDS 40.0%
AAATGAGGAAGCTTGATACC+TGG + chr4_4:2188278-2188297 Msa0663390:CDS 40.0%
TTAGTACCTCACGCTTGTTT+AGG - chr4_4:2188312-2188331 None:intergenic 40.0%
TGGTCTCCTACTAATGTTCT+TGG + chr4_4:2188497-2188516 Msa0663390:intron 40.0%
ATTCAAATCAAGGGCAACCA+AGG - chr4_4:2188579-2188598 None:intergenic 40.0%
GTGGAAGGCCAATTAAAGTT+GGG - chr4_4:2188647-2188666 None:intergenic 40.0%
TGTGGAAGGCCAATTAAAGT+TGG - chr4_4:2188648-2188667 None:intergenic 40.0%
!! TAGACTCTGGGACAAATTAG+CGG - chr4_4:2188673-2188692 None:intergenic 40.0%
! ATTGATTCCTGGAGTCTTTC+TGG - chr4_4:2189003-2189022 None:intergenic 40.0%
TAGCTGATGAGAATGTCTTC+AGG + chr4_4:2189053-2189072 Msa0663390:CDS 40.0%
TCCAAACTACCAGAGAGAAA+AGG + chr4_4:2189202-2189221 Msa0663390:intron 40.0%
! TCCTTTTCTCTCTGGTAGTT+TGG - chr4_4:2189206-2189225 None:intergenic 40.0%
AAACTACCAGAGAGAAAAGG+AGG + chr4_4:2189205-2189224 Msa0663390:intron 40.0%
!!! CTAGTTGCTTTTCCAACTGA+AGG - chr4_4:2189247-2189266 None:intergenic 40.0%
CTGCAAGTCATGAAACATCT+TGG + chr4_4:2189314-2189333 Msa0663390:CDS 40.0%
TCTTGGAGATCAAGATGATG+CGG + chr4_4:2189331-2189350 Msa0663390:CDS 40.0%
GGAAGAGATGAATTCAGAGT+TGG + chr4_4:2189370-2189389 Msa0663390:CDS 40.0%
CCTGTAGTTCATCATTGCTT+TGG - chr4_4:2189460-2189479 None:intergenic 40.0%
CCAAAGCAATGATGAACTAC+AGG + chr4_4:2189457-2189476 Msa0663390:CDS 40.0%
ATGATGAACTACAGGAAGCT+CGG + chr4_4:2189465-2189484 Msa0663390:CDS 40.0%
GATTATCTCCACCTCTCTTT+AGG + chr4_4:2189671-2189690 Msa0663390:intron 40.0%
GGGTTAAATGAAATGCTGAC+TGG + chr4_4:2189791-2189810 Msa0663390:CDS 40.0%
TAATATTGGCACCAAGAGGA+TGG + chr4_4:2189823-2189842 Msa0663390:CDS 40.0%
AATATTGGCACCAAGAGGAT+GGG + chr4_4:2189824-2189843 Msa0663390:CDS 40.0%
TCACAAAAACCTTCTGGTCA+AGG - chr4_4:2189853-2189872 None:intergenic 40.0%
AGGCATTCACAAAAACCTTC+TGG - chr4_4:2189859-2189878 None:intergenic 40.0%
TTCTGATGAAGCTGGGATAA+AGG + chr4_4:2189895-2189914 Msa0663390:CDS 40.0%
CTGTTGAGCTTTGCTCTTTA+TGG + chr4_4:2189918-2189937 Msa0663390:CDS 40.0%
GCTTTATGGTACATACCACA+TGG - chr4_4:2190003-2190022 None:intergenic 40.0%
CAAAAGCTGAAGAAGGAATG+GGG + chr4_4:2190135-2190154 Msa0663390:CDS 40.0%
ATGTGCATATGACTGCAACT+GGG - chr4_4:2190450-2190469 None:intergenic 40.0%
CTGGATGATTGCAATTGAAG+TGG + chr4_4:2190646-2190665 Msa0663390:intron 40.0%
GCTTTGCACCTCACATATAT+TGG + chr4_4:2190850-2190869 Msa0663390:intron 40.0%
AGTTTATCTTGAGGCTTTGC+AGG + chr4_4:2191138-2191157 Msa0663390:intron 40.0%
GTTTATCTTGAGGCTTTGCA+GGG + chr4_4:2191139-2191158 Msa0663390:intron 40.0%
TACATCATATCTCAATCGGG+AGG + chr4_4:2191168-2191187 Msa0663390:three_prime_UTR 40.0%
GTTATCACGGTTATCGCATA+CGG + chr4_4:2191392-2191411 Msa0663390:three_prime_UTR 40.0%
ATGGAAGCTCAGCTCAGAAA+AGG - chr4_4:2186488-2186507 None:intergenic 45.0%
CCAGCCCTTAACTCTTCATA+TGG - chr4_4:2187282-2187301 None:intergenic 45.0%
CCATATGAAGAGTTAAGGGC+TGG + chr4_4:2187279-2187298 Msa0663390:five_prime_UTR 45.0%
ACTTAGGTGTCCGTATTGCT+CGG + chr4_4:2187332-2187351 Msa0663390:five_prime_UTR 45.0%
TTGCTCGGGAAAGAAAAAGC+AGG + chr4_4:2187347-2187366 Msa0663390:five_prime_UTR 45.0%
! ATCTGGAGTAGGCAAAGGTT+CGG + chr4_4:2187401-2187420 Msa0663390:five_prime_UTR 45.0%
AGTTCTCAACTTGGACAGGT+TGG - chr4_4:2187542-2187561 None:intergenic 45.0%
ACGTAGTTCTCAACTTGGAC+AGG - chr4_4:2187546-2187565 None:intergenic 45.0%
GCCAAACGTAGTTCTCAACT+TGG - chr4_4:2187551-2187570 None:intergenic 45.0%
TTGACAAGTATGCCTGTCCA+CGG - chr4_4:2187573-2187592 None:intergenic 45.0%
GGCTGTTCATACGTTCTTGA+TGG + chr4_4:2187653-2187672 Msa0663390:five_prime_UTR 45.0%
TTGGAATTCCATGGACTTGC+AGG + chr4_4:2187781-2187800 Msa0663390:exon 45.0%
TAATTGTCCAGGGTCGATTG+GGG + chr4_4:2187847-2187866 Msa0663390:CDS 45.0%
AGTACCTTCGCAACAAAGGA+AGG + chr4_4:2187870-2187889 Msa0663390:CDS 45.0%
TATGTCCTTGAGTAGGATGC+TGG + chr4_4:2188024-2188043 Msa0663390:CDS 45.0%
GGGGGAAAAAACACTTGCAT+TGG + chr4_4:2188132-2188151 Msa0663390:intron 45.0%
! TGAGGAGGTACGAAGGATAT+TGG + chr4_4:2188219-2188238 Msa0663390:CDS 45.0%
AGGTACTAACCGATCAAGAG+AGG + chr4_4:2188323-2188342 Msa0663390:CDS 45.0%
CAGTTTCTGCCTCTCTTGAT+CGG - chr4_4:2188335-2188354 None:intergenic 45.0%
ACTGGAAGAGGACAAGAAGA+AGG + chr4_4:2188351-2188370 Msa0663390:CDS 45.0%
!! AGACTCTGGGACAAATTAGC+GGG - chr4_4:2188672-2188691 None:intergenic 45.0%
AAGGCTCCTCAAGCATGTAA+AGG - chr4_4:2188915-2188934 None:intergenic 45.0%
ATTCCTGGAGTCTTTCTGGA+AGG - chr4_4:2188999-2189018 None:intergenic 45.0%
! CAACTGGAGTGATTGATTCC+TGG - chr4_4:2189014-2189033 None:intergenic 45.0%
CAGGAATCAATCACTCCAGT+TGG + chr4_4:2189012-2189031 Msa0663390:CDS 45.0%
AGCTATCTTCTGCTCCTTTG+AGG - chr4_4:2189038-2189057 None:intergenic 45.0%
!! CAGGCTTGTTGAAGAGCAAA+AGG + chr4_4:2189072-2189091 Msa0663390:CDS 45.0%
AAAGGTTTGCCCTACTCACT+TGG + chr4_4:2189090-2189109 Msa0663390:intron 45.0%
GGTGGAGATAATCTTCATGC+AGG - chr4_4:2189664-2189683 None:intergenic 45.0%
TGAGCTTTGCTCTTTATGGC+AGG + chr4_4:2189922-2189941 Msa0663390:CDS 45.0%
!! AGCTTGGCACCCTTTTAAAG+TGG + chr4_4:2189961-2189980 Msa0663390:CDS 45.0%
GCTACGCAAAAAACAGAGCA+TGG - chr4_4:2190025-2190044 None:intergenic 45.0%
AAACAGTATACCCACCACTG+GGG - chr4_4:2190215-2190234 None:intergenic 45.0%
CAAACAGTATACCCACCACT+GGG - chr4_4:2190216-2190235 None:intergenic 45.0%
!! CAGTGGTGGGTATACTGTTT+GGG + chr4_4:2190215-2190234 Msa0663390:CDS 45.0%
AAGCAACTTAAGCGCAAGAG+AGG + chr4_4:2190309-2190328 Msa0663390:CDS 45.0%
AAGAGAGGAGGATAGGCAAA+AGG + chr4_4:2190324-2190343 Msa0663390:exon 45.0%
CATGTGCATATGACTGCAAC+TGG - chr4_4:2190451-2190470 None:intergenic 45.0%
!! CAGGAGCACCAATATATGTG+AGG - chr4_4:2190861-2190880 None:intergenic 45.0%
GACAGACAGGAGCAATTGAA+AGG - chr4_4:2190933-2190952 None:intergenic 45.0%
TCAATTGCTCCTGTCTGTCA+TGG + chr4_4:2190934-2190953 Msa0663390:intron 45.0%
ATCATATCTCAATCGGGAGG+TGG + chr4_4:2191171-2191190 Msa0663390:three_prime_UTR 45.0%
TGAATGCACGAAACCCTAGG+AGG - chr4_4:2186441-2186460 None:intergenic 50.0%
! GATCAGTGAGTCTGAGATCG+AGG + chr4_4:2187242-2187261 Msa0663390:five_prime_UTR 50.0%
CTTAGGTGTCCGTATTGCTC+GGG + chr4_4:2187333-2187352 Msa0663390:five_prime_UTR 50.0%
GATCTGTTGCAGCATGCATC+TGG + chr4_4:2187384-2187403 Msa0663390:five_prime_UTR 50.0%
! TTGCAGCATGCATCTGGAGT+AGG + chr4_4:2187390-2187409 Msa0663390:five_prime_UTR 50.0%
! CATGCATCTGGAGTAGGCAA+AGG + chr4_4:2187396-2187415 Msa0663390:five_prime_UTR 50.0%
ACGACAGCTAAGGTCAAAGC+CGG - chr4_4:2187519-2187538 None:intergenic 50.0%
TTGAGAACTACGTTTGGCCG+TGG + chr4_4:2187553-2187572 Msa0663390:five_prime_UTR 50.0%
! CTTGATGGATGGTAACTGCG+TGG + chr4_4:2187668-2187687 Msa0663390:five_prime_UTR 50.0%
TGAACTGTCCTGCAAGTCCA+TGG - chr4_4:2187792-2187811 None:intergenic 50.0%
TCAGCCTTCCTTTGTTGCGA+AGG - chr4_4:2187877-2187896 None:intergenic 50.0%
TTCGCAACAAAGGAAGGCTG+AGG + chr4_4:2187876-2187895 Msa0663390:CDS 50.0%
CTTGTTTAGGTCTCTGCTCC+AGG - chr4_4:2188299-2188318 None:intergenic 50.0%
CAGAGACCTAAACAAGCGTG+AGG + chr4_4:2188303-2188322 Msa0663390:CDS 50.0%
CGATCAAGAGAGGCAGAAAC+TGG + chr4_4:2188333-2188352 Msa0663390:CDS 50.0%
AGAGAGGCAGAAACTGGAAG+AGG + chr4_4:2188339-2188358 Msa0663390:CDS 50.0%
!! ACAAATTAGCGGGCTGTGGA+AGG - chr4_4:2188662-2188681 None:intergenic 50.0%
TGTCCTTCCAGAAAGACTCC+AGG + chr4_4:2188993-2189012 Msa0663390:intron 50.0%
! ATCACTCCAGTTGGCCTCAA+AGG + chr4_4:2189021-2189040 Msa0663390:CDS 50.0%
CTACCAGAGAGAAAAGGAGG+AGG + chr4_4:2189208-2189227 Msa0663390:intron 50.0%
GTTAACGAGTACAACCCCAG+TGG + chr4_4:2190198-2190217 Msa0663390:CDS 50.0%
CCAAACAGTATACCCACCAC+TGG - chr4_4:2190217-2190236 None:intergenic 50.0%
!! CCAGTGGTGGGTATACTGTT+TGG + chr4_4:2190214-2190233 Msa0663390:CDS 50.0%
GGTATACTGTTTGGGAGCTG+TGG + chr4_4:2190223-2190242 Msa0663390:CDS 50.0%
CAACTTAAGCGCAAGAGAGG+AGG + chr4_4:2190312-2190331 Msa0663390:CDS 50.0%
TAAGCGCAAGAGAGGAGGAT+AGG + chr4_4:2190317-2190336 Msa0663390:CDS 50.0%
CGACAGCTAAGGTCAAAGCC+GGG - chr4_4:2187518-2187537 None:intergenic 55.0%
! GACAGGTTGGACGACAGCTA+AGG - chr4_4:2187529-2187548 None:intergenic 55.0%
AACTACGTTTGGCCGTGGAC+AGG + chr4_4:2187558-2187577 Msa0663390:five_prime_UTR 55.0%
!! GGGGAGTACCTTCGCAACAA+AGG + chr4_4:2187866-2187885 Msa0663390:CDS 55.0%
GTCCTTGAGTAGGATGCTGG+AGG + chr4_4:2188027-2188046 Msa0663390:CDS 55.0%
CTCCTCCAGCATCCTACTCA+AGG - chr4_4:2188032-2188051 None:intergenic 55.0%
CATGCAGCGTAAAGCTCGTG+AGG + chr4_4:2188201-2188220 Msa0663390:CDS 55.0%
! AAGCTCGTGAGGAGGTACGA+AGG + chr4_4:2188212-2188231 Msa0663390:CDS 55.0%
!! TGGGACAAATTAGCGGGCTG+TGG - chr4_4:2188666-2188685 None:intergenic 55.0%
!! TCTGCTCCTTTGAGGCCAAC+TGG - chr4_4:2189030-2189049 None:intergenic 55.0%
! AGGCCTCCTCCTTTTCTCTC+TGG - chr4_4:2189214-2189233 None:intergenic 55.0%
GTCAAGGTCTCCCATCCTCT+TGG - chr4_4:2189837-2189856 None:intergenic 55.0%
GATGGGAGACCTTGACCAGA+AGG + chr4_4:2189841-2189860 Msa0663390:CDS 55.0%
AACGAGTACAACCCCAGTGG+TGG + chr4_4:2190201-2190220 Msa0663390:CDS 55.0%
ACGAGTACAACCCCAGTGGT+GGG + chr4_4:2190202-2190221 Msa0663390:CDS 55.0%
AGCAGACCAAGTACCTCGCC+CGG + chr4_4:2187497-2187516 Msa0663390:five_prime_UTR 60.0%
! TCAAAGCCGGGCGAGGTACT+TGG - chr4_4:2187506-2187525 None:intergenic 60.0%
AGGTACTCCCCAATCGACCC+TGG - chr4_4:2187857-2187876 None:intergenic 60.0%
GCAGCGTAAAGCTCGTGAGG+AGG + chr4_4:2188204-2188223 Msa0663390:CDS 60.0%
GCTAAGGTCAAAGCCGGGCG+AGG - chr4_4:2187513-2187532 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 2186420 2191469 2186420 ID=Msa0663390;Name=Msa0663390
chr4_4 mRNA 2186420 2191469 2186420 ID=Msa0663390-mRNA-1;Parent=Msa0663390;Name=Msa0663390-mRNA-1;_AED=0.03;_eAED=0.03;_QI=693|1|1|1|0.71|0.62|8|317|433
chr4_4 exon 2186420 2186529 2186420 ID=Msa0663390-mRNA-1:exon:580;Parent=Msa0663390-mRNA-1
chr4_4 exon 2187208 2188082 2187208 ID=Msa0663390-mRNA-1:exon:581;Parent=Msa0663390-mRNA-1
chr4_4 exon 2188191 2188372 2188191 ID=Msa0663390-mRNA-1:exon:582;Parent=Msa0663390-mRNA-1
chr4_4 exon 2189004 2189093 2189004 ID=Msa0663390-mRNA-1:exon:583;Parent=Msa0663390-mRNA-1
chr4_4 exon 2189215 2189502 2189215 ID=Msa0663390-mRNA-1:exon:584;Parent=Msa0663390-mRNA-1
chr4_4 exon 2189791 2190006 2189791 ID=Msa0663390-mRNA-1:exon:585;Parent=Msa0663390-mRNA-1
chr4_4 exon 2190105 2190345 2190105 ID=Msa0663390-mRNA-1:exon:586;Parent=Msa0663390-mRNA-1
chr4_4 exon 2191160 2191469 2191160 ID=Msa0663390-mRNA-1:exon:587;Parent=Msa0663390-mRNA-1
chr4_4 five_prime_UTR 2186420 2186529 2186420 ID=Msa0663390-mRNA-1:five_prime_utr;Parent=Msa0663390-mRNA-1
chr4_4 five_prime_UTR 2187208 2187790 2187208 ID=Msa0663390-mRNA-1:five_prime_utr;Parent=Msa0663390-mRNA-1
chr4_4 CDS 2187791 2188082 2187791 ID=Msa0663390-mRNA-1:cds;Parent=Msa0663390-mRNA-1
chr4_4 CDS 2188191 2188372 2188191 ID=Msa0663390-mRNA-1:cds;Parent=Msa0663390-mRNA-1
chr4_4 CDS 2189004 2189093 2189004 ID=Msa0663390-mRNA-1:cds;Parent=Msa0663390-mRNA-1
chr4_4 CDS 2189215 2189502 2189215 ID=Msa0663390-mRNA-1:cds;Parent=Msa0663390-mRNA-1
chr4_4 CDS 2189791 2190006 2189791 ID=Msa0663390-mRNA-1:cds;Parent=Msa0663390-mRNA-1
chr4_4 CDS 2190105 2190338 2190105 ID=Msa0663390-mRNA-1:cds;Parent=Msa0663390-mRNA-1
chr4_4 three_prime_UTR 2190339 2190345 2190339 ID=Msa0663390-mRNA-1:three_prime_utr;Parent=Msa0663390-mRNA-1
chr4_4 three_prime_UTR 2191160 2191469 2191160 ID=Msa0663390-mRNA-1:three_prime_utr;Parent=Msa0663390-mRNA-1
Gene Sequence

>Msa0663390

ATGGACTTGCAGGACAGTTCAGAGATTTACGGTTGGGTTGCACGTGAAGATGATTATAATTGTCCAGGGTCGATTGGGGAGTACCTTCGCAACAAAGGAAGGCTGAGGACAATTTCAGATATAGTTCAAGAAGCATCTCAAAGCAGAAATAGCATTGTGGAAAACCTGGCAAATGAGATTGATATTACTAATGAAAATCTCAACAAGATGCAGTATAGGTATAATGAGAAGACTATGTCCTTGAGTAGGATGCTGGAGGAGAAAGACAAACTTCACAATGCTTTTGTTGAAGAGTCAAGGAGCATGCAGCGTAAAGCTCGTGAGGAGGTACGAAGGATATTGGAAGAACAAGAAAAGTTGAGTAATGAATTGGATGAAAAAATGAGGAAGCTTGATACCTGGAGCAGAGACCTAAACAAGCGTGAGGTACTAACCGATCAAGAGAGGCAGAAACTGGAAGAGGACAAGAAGAAGAAAGACTCCAGGAATCAATCACTCCAGTTGGCCTCAAAGGAGCAGAAGATAGCTGATGAGAATGTCTTCAGGCTTGTTGAAGAGCAAAAGAGAGAAAAGGAGGAGGCCTTAAACAAGATCCTTCAGTTGGAAAAGCAACTAGATGCCAAACAAAAATTGGAAATGGAAATTGAAGAACTAAAAGGGAAACTGCAAGTCATGAAACATCTTGGAGATCAAGATGATGCGGCTATTAAGAAAAAAATGGAAGAGATGAATTCAGAGTTGGAAGACAAAATAGAAAGTTTGGAAGATATGGAGTCTATGAATTTAACGCTTATTGTCAAGGAGCGCCAAAGCAATGATGAACTACAGGAAGCTCGGAAAGAATTAATAGAAGGGTTAAATGAAATGCTGACTGGTGCCAAAACTAATATTGGCACCAAGAGGATGGGAGACCTTGACCAGAAGGTTTTTGTGAATGCCTGCAAGAAAAGATTTTCTTCTGATGAAGCTGGGATAAAGGCTGTTGAGCTTTGCTCTTTATGGCAGGAAAATGTGAAGAACTCAGCTTGGCACCCTTTTAAAGTGGTTACAGAGAATGATAACCATGTGTCAGTTATAGATGAGAAAGATGAGAAACTACAAAAGCTGAAGAAGGAATGGGGAGACGAGATATATTCAGCTGTTGTAACAGCCTTAAAAGAAGTTAACGAGTACAACCCCAGTGGTGGGTATACTGTTTGGGAGCTGTGGAACTTCAAAGAAAATAGGAAGGCAACACTGAAAGAAGTGATCACTTATATTGTGGATCACATGAAGCAACTTAAGCGCAAGAGAGGAGGATAG
Protein sequence

>Msa0663390

MDLQDSSEIYGWVAREDDYNCPGSIGEYLRNKGRLRTISDIVQEASQSRNSIVENLANEIDITNENLNKMQYRYNEKTMSLSRMLEEKDKLHNAFVEESRSMQRKAREEVRRILEEQEKLSNELDEKMRKLDTWSRDLNKREVLTDQERQKLEEDKKKKDSRNQSLQLASKEQKIADENVFRLVEEQKREKEEALNKILQLEKQLDAKQKLEMEIEELKGKLQVMKHLGDQDDAAIKKKMEEMNSELEDKIESLEDMESMNLTLIVKERQSNDELQEARKELIEGLNEMLTGAKTNIGTKRMGDLDQKVFVNACKKRFSSDEAGIKAVELCSLWQENVKNSAWHPFKVVTENDNHVSVIDEKDEKLQKLKKEWGDEIYSAVVTALKEVNEYNPSGGYTVWELWNFKENRKATLKEVITYIVDHMKQLKRKRGG*