Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245540 | XP_003595227.1 | 98.228 | 508 | 9 | 0 | 1 | 508 | 1 | 508 | 0.0 | 1038 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245540 | sp|O82645|IQM1_ARATH | 63.011 | 465 | 145 | 5 | 41 | 503 | 45 | 484 | 0.0 | 575 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245540 | G7IQ65 | 98.228 | 508 | 9 | 0 | 1 | 508 | 1 | 508 | 0.0 | 1038 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001380 | Msa0245540 | 0.810713 | 1.005028e-50 | -8.615850e-47 |
| Msa0017320 | Msa0245540 | 0.800619 | 1.323982e-48 | -8.615850e-47 |
| Msa0085290 | Msa0245540 | 0.809195 | 2.133635e-50 | -8.615850e-47 |
| Msa0086560 | Msa0245540 | 0.811933 | 5.464765e-51 | -8.615850e-47 |
| Msa0119440 | Msa0245540 | 0.807510 | 4.880772e-50 | -8.615850e-47 |
| Msa0162690 | Msa0245540 | 0.801837 | 7.457361e-49 | -8.615850e-47 |
| Msa0194010 | Msa0245540 | 0.801653 | 8.134374e-49 | -8.615850e-47 |
| Msa0202580 | Msa0245540 | 0.923174 | 3.756380e-89 | -8.615850e-47 |
| Msa0235880 | Msa0245540 | 0.801899 | 7.242866e-49 | -8.615850e-47 |
| Msa0240270 | Msa0245540 | 0.809648 | 1.705684e-50 | -8.615850e-47 |
| Msa0244190 | Msa0245540 | 0.809466 | 1.866178e-50 | -8.615850e-47 |
| Msa0245540 | Msa0269810 | 0.814332 | 1.625791e-51 | -8.615850e-47 |
| Msa0245540 | Msa0322370 | 0.842667 | 2.248721e-58 | -8.615850e-47 |
| Msa0245540 | Msa0364790 | 0.828728 | 7.651439e-55 | -8.615850e-47 |
| Msa0245540 | Msa0418400 | 0.822261 | 2.604184e-53 | -8.615850e-47 |
| Msa0245540 | Msa0472770 | 0.818377 | 2.023676e-52 | -8.615850e-47 |
| Msa0245540 | Msa0482180 | 0.803243 | 3.826461e-49 | -8.615850e-47 |
| Msa0245540 | Msa0524440 | 0.805157 | 1.528663e-49 | -8.615850e-47 |
| Msa0245540 | Msa0576750 | 0.807434 | 5.064312e-50 | -8.615850e-47 |
| Msa0245540 | Msa0742150 | 0.834045 | 3.759880e-56 | -8.615850e-47 |
| Msa0245540 | Msa0748660 | 0.802925 | 4.451068e-49 | -8.615850e-47 |
| Msa0245540 | Msa0764920 | 0.810675 | 1.024634e-50 | -8.615850e-47 |
| Msa0245540 | Msa0775560 | 0.815552 | 8.721581e-52 | -8.615850e-47 |
| Msa0245540 | Msa0786070 | 0.829325 | 5.482745e-55 | -8.615850e-47 |
| Msa0245540 | Msa0812950 | 0.807657 | 4.540737e-50 | -8.615850e-47 |
| Msa0245540 | Msa0813260 | 0.806631 | 7.491197e-50 | -8.615850e-47 |
| Msa0245540 | Msa0862280 | 0.800119 | 1.673626e-48 | -8.615850e-47 |
| Msa0245540 | Msa0862690 | 0.803928 | 2.757661e-49 | -8.615850e-47 |
| Msa0245540 | Msa0862820 | 0.820112 | 8.148671e-53 | -8.615850e-47 |
| Msa0245540 | Msa1225100 | 0.805943 | 1.045843e-49 | -8.615850e-47 |
| Msa0245540 | Msa1246700 | 0.825881 | 3.679534e-54 | -8.615850e-47 |
| Msa0245540 | Msa1329870 | 0.808674 | 2.758157e-50 | -8.615850e-47 |
| Msa0245540 | Msa1335230 | 0.800189 | 1.619722e-48 | -8.615850e-47 |
| Msa0245540 | Msa1365270 | 0.805434 | 1.337713e-49 | -8.615850e-47 |
| Msa0245540 | Msa1376450 | 0.814368 | 1.596694e-51 | -8.615850e-47 |
| Msa0245540 | Msa1389760 | 0.802758 | 4.818333e-49 | -8.615850e-47 |
| Msa0245540 | Msa1405220 | 0.803872 | 2.833469e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245540 | MtrunA17_Chr2g0299641 | 98.228 | 508 | 9 | 0 | 1 | 508 | 1 | 508 | 0.0 | 1038 |
| Msa0245540 | MtrunA17_Chr4g0071041 | 75.053 | 469 | 87 | 5 | 54 | 507 | 17 | 470 | 0.0 | 677 |
| Msa0245540 | MtrunA17_Chr8g0342561 | 62.818 | 433 | 145 | 3 | 74 | 506 | 84 | 500 | 0.0 | 564 |
| Msa0245540 | MtrunA17_Chr2g0330061 | 54.048 | 420 | 156 | 6 | 86 | 499 | 76 | 464 | 3.24e-152 | 442 |
| Msa0245540 | MtrunA17_Chr8g0378761 | 67.626 | 278 | 82 | 2 | 94 | 368 | 126 | 398 | 3.06e-140 | 419 |
| Msa0245540 | MtrunA17_Chr8g0378761 | 59.016 | 61 | 24 | 1 | 416 | 476 | 544 | 603 | 2.55e-14 | 75.9 |
| Msa0245540 | MtrunA17_Chr3g0121261 | 67.286 | 269 | 85 | 1 | 107 | 372 | 5 | 273 | 6.28e-137 | 397 |
| Msa0245540 | MtrunA17_Chr1g0176231 | 66.788 | 274 | 91 | 0 | 96 | 369 | 66 | 339 | 2.42e-131 | 393 |
| Msa0245540 | MtrunA17_Chr1g0176231 | 36.232 | 138 | 60 | 4 | 366 | 501 | 452 | 563 | 6.35e-14 | 74.3 |
| Msa0245540 | MtrunA17_Chr1g0178991 | 47.380 | 439 | 189 | 8 | 87 | 486 | 46 | 481 | 1.89e-124 | 373 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245540 | AT4G33050.5 | 63.011 | 465 | 145 | 5 | 41 | 503 | 117 | 556 | 0.0 | 575 |
| Msa0245540 | AT4G33050.3 | 63.011 | 465 | 145 | 5 | 41 | 503 | 45 | 484 | 0.0 | 575 |
| Msa0245540 | AT4G33050.2 | 58.250 | 503 | 145 | 6 | 41 | 503 | 45 | 522 | 0.0 | 557 |
| Msa0245540 | AT2G26190.3 | 56.673 | 547 | 179 | 8 | 1 | 506 | 1 | 530 | 0.0 | 544 |
| Msa0245540 | AT2G26190.1 | 56.673 | 547 | 179 | 8 | 1 | 506 | 1 | 530 | 0.0 | 544 |
| Msa0245540 | AT5G57010.1 | 63.571 | 420 | 114 | 3 | 84 | 503 | 114 | 494 | 0.0 | 538 |
| Msa0245540 | AT2G26190.2 | 60.553 | 398 | 120 | 5 | 1 | 362 | 1 | 397 | 4.85e-155 | 448 |
| Msa0245540 | AT3G13600.1 | 62.342 | 316 | 101 | 4 | 104 | 401 | 108 | 423 | 1.14e-139 | 416 |
| Msa0245540 | AT3G13600.1 | 50.562 | 89 | 40 | 2 | 416 | 504 | 517 | 601 | 1.62e-17 | 86.3 |
| Msa0245540 | AT3G13600.2 | 62.342 | 316 | 101 | 4 | 104 | 401 | 108 | 423 | 1.14e-139 | 416 |
| Msa0245540 | AT3G13600.2 | 50.562 | 89 | 40 | 2 | 416 | 504 | 517 | 601 | 1.62e-17 | 86.3 |
| Msa0245540 | AT4G33050.4 | 67.123 | 292 | 93 | 2 | 41 | 330 | 45 | 335 | 2.66e-134 | 392 |
| Msa0245540 | AT3G58480.1 | 59.502 | 321 | 125 | 2 | 104 | 419 | 98 | 418 | 1.83e-133 | 399 |
| Msa0245540 | AT3G58480.1 | 56.250 | 48 | 21 | 0 | 423 | 470 | 498 | 545 | 4.12e-11 | 65.9 |
| Msa0245540 | AT3G52870.1 | 49.250 | 400 | 171 | 6 | 104 | 472 | 49 | 447 | 1.88e-131 | 389 |
| Msa0245540 | AT4G33050.1 | 59.394 | 330 | 93 | 3 | 41 | 330 | 45 | 373 | 1.39e-126 | 374 |
| Msa0245540 | AT4G33050.6 | 68.075 | 213 | 65 | 2 | 41 | 251 | 45 | 256 | 3.71e-95 | 289 |
Find 150 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCACTTATATTATGATATT+TGG | 0.113028 | 2_2:+25308898 | Msa0245540:CDS |
| AGGCAAGTATTGAAGAAATT+AGG | 0.162948 | 2_2:+25310463 | Msa0245540:exon |
| CTATTCTCTTGTAGTTCTTA+TGG | 0.189651 | 2_2:+25310833 | Msa0245540:three_prime_UTR |
| TATAAACTTTGCAGGCTATT+TGG | 0.196615 | 2_2:+25309815 | Msa0245540:intron |
| TCCTTTGTTGCTCACATTAT+TGG | 0.207208 | 2_2:-25310135 | None:intergenic |
| TTCATCAAACAAATTGAAAT+TGG | 0.211861 | 2_2:+25307688 | Msa0245540:five_prime_UTR |
| GATTCATTAGTTTCAATAAA+TGG | 0.225018 | 2_2:-25310068 | None:intergenic |
| CAAACAGCAATTGGGGTTCT+TGG | 0.242705 | 2_2:-25310440 | None:intergenic |
| CAAAATCATAGCACCATCTT+TGG | 0.243712 | 2_2:-25307819 | None:intergenic |
| ATAGATATTTGTTTGTGTTT+TGG | 0.264992 | 2_2:+25310780 | Msa0245540:three_prime_UTR |
| CAACACTCTAGCTTTCTATC+TGG | 0.277196 | 2_2:+25309492 | Msa0245540:CDS |
| ATTGTTAGGCATTCACTCTT+TGG | 0.277775 | 2_2:+25307770 | Msa0245540:CDS |
| TGCTGGGACCTCAAATTTCT+TGG | 0.285980 | 2_2:-25310189 | None:intergenic |
| TAGGAGAAATCCTAACTTTA+GGG | 0.286465 | 2_2:-25310391 | None:intergenic |
| ATACATTGTGTCTTAGTAAA+AGG | 0.287560 | 2_2:-25310889 | None:intergenic |
| CTTACATTCAACTATAGTTT+TGG | 0.302288 | 2_2:+25307794 | Msa0245540:CDS |
| TTGGCCTTGGAGAAGGTATT+GGG | 0.317413 | 2_2:-25310367 | None:intergenic |
| CCCTAAGGCCATGAATCATT+TGG | 0.319682 | 2_2:-25310919 | None:intergenic |
| GCCCTTGATTGAAGATGTTC+AGG | 0.324654 | 2_2:-25310287 | None:intergenic |
| GAAGAGAAAACAACTTCTTT+AGG | 0.325682 | 2_2:-25307986 | None:intergenic |
| CTAGGAGAAATCCTAACTTT+AGG | 0.328618 | 2_2:-25310392 | None:intergenic |
| CTTGGCCTTGGAGAAGGTAT+TGG | 0.342306 | 2_2:-25310368 | None:intergenic |
| GGCAAGTATTGAAGAAATTA+GGG | 0.343721 | 2_2:+25310464 | Msa0245540:three_prime_UTR |
| TACTTGCCTCAAACAGCAAT+TGG | 0.345712 | 2_2:-25310449 | None:intergenic |
| GTGTCAAGGGTAACATGTTC+TGG | 0.349098 | 2_2:-25307914 | None:intergenic |
| CGCCAGTGCATTAAATATCT+TGG | 0.351341 | 2_2:+25309132 | Msa0245540:CDS |
| CTGTTGTTGTTGAGGAACTA+TGG | 0.353192 | 2_2:+25308101 | Msa0245540:CDS |
| TTCTCCTAGGCTTGCATACA+TGG | 0.355525 | 2_2:+25310406 | Msa0245540:CDS |
| GATGATGCACCTTCATTCAT+TGG | 0.357552 | 2_2:+25310038 | Msa0245540:CDS |
| GGTGTGAATCTACATCTCTA+TGG | 0.373439 | 2_2:+25307709 | Msa0245540:exon |
| CTCTGAAGTTCTCTTCAGTT+GGG | 0.374129 | 2_2:-25309858 | None:intergenic |
| CAAAATCCCTAAAAGAATAA+AGG | 0.385082 | 2_2:-25310750 | None:intergenic |
| GGGGCAGCAACCACAGCTGC+TGG | 0.388269 | 2_2:+25309513 | Msa0245540:CDS |
| CCCAAATGATTCATGGCCTT+AGG | 0.391619 | 2_2:+25310918 | Msa0245540:three_prime_UTR |
| AGACTGATGAAAAGTCTAAA+TGG | 0.396024 | 2_2:+25309409 | Msa0245540:CDS |
| GGTATTGGGCCATAGCTATA+TGG | 0.404459 | 2_2:-25310353 | None:intergenic |
| TTCTTTACTATCATCAGCTT+GGG | 0.405123 | 2_2:+25307742 | Msa0245540:CDS |
| GGGTGATAATGACCACTATA+AGG | 0.406891 | 2_2:-25309838 | None:intergenic |
| ATATGAAGTAATTGTTGAAA+AGG | 0.407093 | 2_2:+25309350 | Msa0245540:CDS |
| ACTTGCCTCAAACAGCAATT+GGG | 0.408107 | 2_2:-25310448 | None:intergenic |
| AACACTCTAGCTTTCTATCT+GGG | 0.410297 | 2_2:+25309493 | Msa0245540:CDS |
| AAACAGCAATTGGGGTTCTT+GGG | 0.411345 | 2_2:-25310439 | None:intergenic |
| CAGCTTGGGAAGAAATTGTT+AGG | 0.416385 | 2_2:+25307756 | Msa0245540:CDS |
| CAAGGCCAAGCCCTAAAGTT+AGG | 0.416656 | 2_2:+25310381 | Msa0245540:CDS |
| CAGGAGCTGGACCTCGTATT+GGG | 0.418667 | 2_2:+25310249 | Msa0245540:CDS |
| CCAAATGATTCATGGCCTTA+GGG | 0.420899 | 2_2:+25310919 | Msa0245540:three_prime_UTR |
| ATTTAATGCACTGGCGTTGA+AGG | 0.425705 | 2_2:-25309125 | None:intergenic |
| ACAGGAGCTGGACCTCGTAT+TGG | 0.428286 | 2_2:+25310248 | Msa0245540:CDS |
| GAAATCCTAACTTTAGGGCT+TGG | 0.428504 | 2_2:-25310386 | None:intergenic |
| TAACTATTAGATGAATTCAA+TGG | 0.432543 | 2_2:+25310567 | Msa0245540:three_prime_UTR |
| CTAACTTTAGGGCTTGGCCT+TGG | 0.434652 | 2_2:-25310380 | None:intergenic |
| ATTGACCCACGTCATCGTTA+TGG | 0.436296 | 2_2:+25308867 | Msa0245540:CDS |
| CCTAAGGCCATGAATCATTT+GGG | 0.438416 | 2_2:-25310918 | None:intergenic |
| CATAAGAACTACAAGAGAAT+AGG | 0.442565 | 2_2:-25310832 | None:intergenic |
| CTCTTGGAAAAGTCAAATGC+TGG | 0.442683 | 2_2:-25310206 | None:intergenic |
| TCATTCACCCAAATGATTCA+TGG | 0.443011 | 2_2:+25310911 | Msa0245540:three_prime_UTR |
| AATTGTTGAAAAGGGAAAGT+TGG | 0.444544 | 2_2:+25309359 | Msa0245540:CDS |
| TGTTATAATTGCAGAAAGAA+AGG | 0.444730 | 2_2:+25309322 | Msa0245540:intron |
| TCTCTGAAGTTCTCTTCAGT+TGG | 0.451697 | 2_2:-25309859 | None:intergenic |
| CCACTTGCATGATAATCTCT+TGG | 0.452364 | 2_2:-25310222 | None:intergenic |
| ATTAGTTTCAATAAATGGAT+TGG | 0.452855 | 2_2:-25310063 | None:intergenic |
| TATGAAGTAATTGTTGAAAA+GGG | 0.453381 | 2_2:+25309351 | Msa0245540:CDS |
| GCTTGATGCTGCAGCAACTA+AGG | 0.459781 | 2_2:+25308027 | Msa0245540:CDS |
| GTATGTTGGAAGGAAACAAA+AGG | 0.459878 | 2_2:+25309461 | Msa0245540:CDS |
| TTTCTTTACTATCATCAGCT+TGG | 0.460682 | 2_2:+25307741 | Msa0245540:CDS |
| GGCAAGGACAAGAGCAGCTA+AGG | 0.461504 | 2_2:+25308560 | Msa0245540:CDS |
| TTATCATGCAAGTGGTCTAC+AGG | 0.465259 | 2_2:+25310230 | Msa0245540:CDS |
| ATGATGCACCTTCATTCATT+GGG | 0.470656 | 2_2:+25310039 | Msa0245540:CDS |
| GAATTGAGGATAACACAAAC+TGG | 0.472433 | 2_2:+25310654 | Msa0245540:three_prime_UTR |
| TTCATCAACATTTGTGTCAA+GGG | 0.476869 | 2_2:-25307927 | None:intergenic |
| TCTCCTAGGCTTGCATACAT+GGG | 0.479470 | 2_2:+25310407 | Msa0245540:CDS |
| GCAATTGGGGTTCTTGGGCT+AGG | 0.483909 | 2_2:-25310434 | None:intergenic |
| AGAACCCCAATTGCTGTTTG+AGG | 0.487231 | 2_2:+25310443 | Msa0245540:CDS |
| GTCCAAGATATTTAATGCAC+TGG | 0.489596 | 2_2:-25309134 | None:intergenic |
| AAGTTGGTGTATAGAAAAGA+TGG | 0.490138 | 2_2:+25309375 | Msa0245540:CDS |
| ATCCTGAACATCTTCAATCA+AGG | 0.491258 | 2_2:+25310285 | Msa0245540:CDS |
| TGCAAGTGGTCTACAGGAGC+TGG | 0.491741 | 2_2:+25310236 | Msa0245540:CDS |
| CTGCAGTGTCAAGGTGGGGA+AGG | 0.491928 | 2_2:+25308538 | Msa0245540:CDS |
| CAGCTTCAAGCCAATGTTGG+AGG | 0.493190 | 2_2:-25308734 | None:intergenic |
| TAGAAAAGATGGGAAGTTTG+TGG | 0.502062 | 2_2:+25309386 | Msa0245540:CDS |
| CACTAATCTTCCAGCAGCTG+TGG | 0.502889 | 2_2:-25309523 | None:intergenic |
| CTAAAGTTAGGATTTCTCCT+AGG | 0.503091 | 2_2:+25310393 | Msa0245540:CDS |
| CACAGCTGCTGGAAGATTAG+TGG | 0.503574 | 2_2:+25309524 | Msa0245540:CDS |
| GTTATAATTGCAGAAAGAAA+GGG | 0.503902 | 2_2:+25309323 | Msa0245540:intron |
| CAGGCTATTTGGCCTTATAG+TGG | 0.505306 | 2_2:+25309826 | Msa0245540:intron |
| TTAGGGCTTGGCCTTGGAGA+AGG | 0.507353 | 2_2:-25310374 | None:intergenic |
| ATTGATTGAGAAGTTTGAGT+AGG | 0.509429 | 2_2:-25310107 | None:intergenic |
| TTTCATCAACATTTGTGTCA+AGG | 0.510168 | 2_2:-25307928 | None:intergenic |
| GGTCTTGCAGAAGCAGGTCT+AGG | 0.511439 | 2_2:-25310332 | None:intergenic |
| ACCACTAGGGCTTTGTATGT+TGG | 0.515347 | 2_2:+25309447 | Msa0245540:CDS |
| TGGCGTTGAAGGGTAGCCCT+TGG | 0.518338 | 2_2:-25309114 | None:intergenic |
| TGATGAAAACTTGAAACATA+AGG | 0.518550 | 2_2:+25307943 | Msa0245540:CDS |
| CTATATGGTCTTGCAGAAGC+AGG | 0.519094 | 2_2:-25310338 | None:intergenic |
| GGTTAATGCCAAGAAATTTG+AGG | 0.520668 | 2_2:+25310181 | Msa0245540:CDS |
| ACCAATAATGTGAGCAACAA+AGG | 0.523579 | 2_2:+25310134 | Msa0245540:CDS |
| ACATCTTCAATCAAGGGCAT+TGG | 0.526183 | 2_2:+25310292 | Msa0245540:CDS |
| AGAATTTGTTAGCTTTCTTG+AGG | 0.528950 | 2_2:+25309879 | Msa0245540:CDS |
| TTGATTGAGAAGTTTGAGTA+GGG | 0.533972 | 2_2:-25310106 | None:intergenic |
| GTGTGAATCTACATCTCTAT+GGG | 0.537392 | 2_2:+25307710 | Msa0245540:exon |
| TTACAGCTTCAAGCCAATGT+TGG | 0.537705 | 2_2:-25308737 | None:intergenic |
| TGATTGTGCTGTTGTTGTTG+AGG | 0.543569 | 2_2:+25308093 | Msa0245540:CDS |
| CTAAGGTGACACTTGAATTG+AGG | 0.545081 | 2_2:+25310640 | Msa0245540:three_prime_UTR |
| CCAAGAGATTATCATGCAAG+TGG | 0.547249 | 2_2:+25310222 | Msa0245540:CDS |
| TGTAGGTTGGATGTTGGAGA+TGG | 0.548321 | 2_2:+25309066 | Msa0245540:intron |
| TATTTGTTCTTAGCACCACT+AGG | 0.553975 | 2_2:+25309433 | Msa0245540:CDS |
| CTTGCCTCAAACAGCAATTG+GGG | 0.561115 | 2_2:-25310447 | None:intergenic |
| CTTCATAAGCTCAACAACAA+AGG | 0.562349 | 2_2:+25307380 | Msa0245540:five_prime_UTR |
| TGGCCTCTGACGACTGAAGT+AGG | 0.564208 | 2_2:+25310591 | Msa0245540:three_prime_UTR |
| AGCTTCAAGCCAATGTTGGA+GGG | 0.566073 | 2_2:-25308733 | None:intergenic |
| TGTCAAGGTGGGGAAGGGCA+AGG | 0.566651 | 2_2:+25308544 | Msa0245540:CDS |
| CTAGGGCTTTGTATGTTGGA+AGG | 0.566948 | 2_2:+25309451 | Msa0245540:CDS |
| GATATGAAGGTGGAAAGCAT+TGG | 0.567332 | 2_2:+25308458 | Msa0245540:intron |
| TGCAGTGTCAAGGTGGGGAA+GGG | 0.568513 | 2_2:+25308539 | Msa0245540:CDS |
| AGAAACTGCAGTGTCAAGGT+GGG | 0.571406 | 2_2:+25308533 | Msa0245540:CDS |
| TCTTGGAAAAGTCAAATGCT+GGG | 0.575381 | 2_2:-25310205 | None:intergenic |
| TCCTGAACATCTTCAATCAA+GGG | 0.582807 | 2_2:+25310286 | Msa0245540:CDS |
| AGTTGGTGTATAGAAAAGAT+GGG | 0.583418 | 2_2:+25309376 | Msa0245540:CDS |
| TATGTTGGAAGGAAACAAAA+GGG | 0.583609 | 2_2:+25309462 | Msa0245540:CDS |
| TCTGCAAGACCATATAGCTA+TGG | 0.585307 | 2_2:+25310344 | Msa0245540:CDS |
| TTTAATGCACTGGCGTTGAA+GGG | 0.586946 | 2_2:-25309124 | None:intergenic |
| AACAAGAAACTGCAGTGTCA+AGG | 0.588506 | 2_2:+25308529 | Msa0245540:CDS |
| ATTTGTTCTTAGCACCACTA+GGG | 0.589990 | 2_2:+25309434 | Msa0245540:CDS |
| CAAACGTTGGATTCATCGAA+TGG | 0.594122 | 2_2:+25310526 | Msa0245540:three_prime_UTR |
| CAAAATTAATAATGCAACAG+AGG | 0.596595 | 2_2:+25310160 | Msa0245540:CDS |
| TATTAGATGAATTCAATGGA+TGG | 0.601301 | 2_2:+25310571 | Msa0245540:three_prime_UTR |
| TTAATCTTGAGAAATGTCCA+AGG | 0.602258 | 2_2:+25309097 | Msa0245540:CDS |
| CTCCTAGGCTTGCATACATG+GGG | 0.604327 | 2_2:+25310408 | Msa0245540:CDS |
| AGGTTTGTCCAAGGATGACA+AGG | 0.605249 | 2_2:+25308698 | Msa0245540:CDS |
| AAGAAACTGCAGTGTCAAGG+TGG | 0.608522 | 2_2:+25308532 | Msa0245540:CDS |
| TCGGAGAGAATCTAGTGCAT+AGG | 0.609510 | 2_2:-25310495 | None:intergenic |
| AGTAGACCTCTCTAATGTCA+AGG | 0.615998 | 2_2:+25309909 | Msa0245540:CDS |
| GGTTGGAAAAGGTTTGTCCA+AGG | 0.616819 | 2_2:+25308689 | Msa0245540:intron |
| TTGTGTCCATAACGATGACG+TGG | 0.625718 | 2_2:-25308873 | None:intergenic |
| ACACTCTAGCTTTCTATCTG+GGG | 0.628826 | 2_2:+25309494 | Msa0245540:CDS |
| TCTCCTACTTCAGTCGTCAG+AGG | 0.629647 | 2_2:-25310594 | None:intergenic |
| GGATTGGTCCCAATGAATGA+AGG | 0.630179 | 2_2:-25310047 | None:intergenic |
| TCTTTAGGCAAAGAAAGCAA+AGG | 0.635023 | 2_2:-25307971 | None:intergenic |
| AGCCCCATGTATGCAAGCCT+AGG | 0.635290 | 2_2:-25310410 | None:intergenic |
| AATTCACCTTGACATTAGAG+AGG | 0.638506 | 2_2:-25309915 | None:intergenic |
| GAAACTGCAGTGTCAAGGTG+GGG | 0.643986 | 2_2:+25308534 | Msa0245540:CDS |
| GGAAGATTAGTGGCACAACA+AGG | 0.648672 | 2_2:+25309534 | Msa0245540:CDS |
| ATGGCCCAATACCTTCTCCA+AGG | 0.649248 | 2_2:+25310363 | Msa0245540:CDS |
| TCCAACGTTTGATCTCTGAT+CGG | 0.656772 | 2_2:-25310514 | None:intergenic |
| TAATCTTGAGAAATGTCCAA+GGG | 0.660398 | 2_2:+25309098 | Msa0245540:CDS |
| TCTGACGACTGAAGTAGGAG+AGG | 0.661874 | 2_2:+25310596 | Msa0245540:three_prime_UTR |
| TCCAACATACAAAGCCCTAG+TGG | 0.663510 | 2_2:-25309448 | None:intergenic |
| TCCGATCAGAGATCAAACGT+TGG | 0.682220 | 2_2:+25310513 | Msa0245540:three_prime_UTR |
| GGCACAACAAGGTGTACTCG+AGG | 0.687576 | 2_2:+25309545 | Msa0245540:CDS |
| TCACGCACACACCCAATACG+AGG | 0.694431 | 2_2:-25310260 | None:intergenic |
| TGTGTCCATAACGATGACGT+GGG | 0.727054 | 2_2:-25308872 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTATTATTTTATTTT+TGG | + | chr2_2:25310708-25310727 | Msa0245540:three_prime_UTR | 0.0% |
| !!! | TTATTTATTATTTTATTTTT+GGG | + | chr2_2:25310709-25310728 | Msa0245540:three_prime_UTR | 0.0% |
| !! | TTTGAACAAAAAAAATATTA+AGG | + | chr2_2:25307517-25307536 | Msa0245540:intron | 10.0% |
| !!! | TTTTAAATCACTTATGAAAT+AGG | - | chr2_2:25307558-25307577 | None:intergenic | 15.0% |
| !!! | TATACGAATTTTGATAATTT+TGG | + | chr2_2:25308200-25308219 | Msa0245540:intron | 15.0% |
| !! | TATAATTTAAGAGAGTAAAT+TGG | + | chr2_2:25308370-25308389 | Msa0245540:intron | 15.0% |
| !!! | GTTTTTTGTATGTTATTAAA+TGG | + | chr2_2:25308422-25308441 | Msa0245540:intron | 15.0% |
| !! | AAATTAAATTGAATTTCAGA+TGG | - | chr2_2:25308592-25308611 | None:intergenic | 15.0% |
| !!! | CTAATTTTTATTTTTCATAC+AGG | + | chr2_2:25308668-25308687 | Msa0245540:intron | 15.0% |
| !! | ATAATAAGACATATATGATT+AGG | - | chr2_2:25308980-25308999 | None:intergenic | 15.0% |
| !! | ATTAGATTATATACTATGAT+CGG | - | chr2_2:25309290-25309309 | None:intergenic | 15.0% |
| !!! | ATTATTTTATTTTTGGGTTT+TGG | + | chr2_2:25310715-25310734 | Msa0245540:three_prime_UTR | 15.0% |
| !!! | ATTATTCCTTTATTCTTTTA+GGG | + | chr2_2:25310744-25310763 | Msa0245540:three_prime_UTR | 15.0% |
| !!! | ATTCTATTGTTTTTTTTAAG+AGG | + | chr2_2:25310808-25310827 | Msa0245540:three_prime_UTR | 15.0% |
| !! | AAAATTTCATTGAAAGCAAA+GGG | - | chr2_2:25307420-25307439 | None:intergenic | 20.0% |
| !! | AAAAATTTCATTGAAAGCAA+AGG | - | chr2_2:25307421-25307440 | None:intergenic | 20.0% |
| !!! | CATAAAATTTGACTTATGTA+TGG | + | chr2_2:25307608-25307627 | Msa0245540:intron | 20.0% |
| !! | TTCATCAAACAAATTGAAAT+TGG | + | chr2_2:25307688-25307707 | Msa0245540:five_prime_UTR | 20.0% |
| !! | TTTGTATGTTATTAAATGGA+TGG | + | chr2_2:25308426-25308445 | Msa0245540:intron | 20.0% |
| !!! | ATGGTTTTTAAATGATATGA+AGG | + | chr2_2:25308445-25308464 | Msa0245540:intron | 20.0% |
| !!! | TTTTTATTTTTCATACAGGT+TGG | + | chr2_2:25308672-25308691 | Msa0245540:intron | 20.0% |
| !! | TGCACTTATATTATGATATT+TGG | + | chr2_2:25308898-25308917 | Msa0245540:CDS | 20.0% |
| !!! | ATATTCTATTGATAACTTAC+TGG | - | chr2_2:25309159-25309178 | None:intergenic | 20.0% |
| !! | TATGAATATTATAAACCCTA+CGG | - | chr2_2:25309237-25309256 | None:intergenic | 20.0% |
| !! | TTAGATTATATACTATGATC+GGG | - | chr2_2:25309289-25309308 | None:intergenic | 20.0% |
| !! | ATATGAAGTAATTGTTGAAA+AGG | + | chr2_2:25309350-25309369 | Msa0245540:CDS | 20.0% |
| !! | TATGAAGTAATTGTTGAAAA+GGG | + | chr2_2:25309351-25309370 | Msa0245540:CDS | 20.0% |
| !! | ATTCAGGTCAATTAAAAAAA+TGG | - | chr2_2:25309584-25309603 | None:intergenic | 20.0% |
| !! | TGTAATATAATGAAAACACA+TGG | - | chr2_2:25309744-25309763 | None:intergenic | 20.0% |
| !! | AGTGATCAAAAAAAGTAAAT+TGG | + | chr2_2:25309955-25309974 | Msa0245540:intron | 20.0% |
| !!! | ATTAGTTTCAATAAATGGAT+TGG | - | chr2_2:25310066-25310085 | None:intergenic | 20.0% |
| !!! | GATTCATTAGTTTCAATAAA+TGG | - | chr2_2:25310071-25310090 | None:intergenic | 20.0% |
| !! | TAACTATTAGATGAATTCAA+TGG | + | chr2_2:25310567-25310586 | Msa0245540:three_prime_UTR | 20.0% |
| !!! | GATTATTCCTTTATTCTTTT+AGG | + | chr2_2:25310743-25310762 | Msa0245540:three_prime_UTR | 20.0% |
| !!! | ATAGATATTTGTTTGTGTTT+TGG | + | chr2_2:25310780-25310799 | Msa0245540:three_prime_UTR | 20.0% |
| !!! | ATGTTTTATTTCCTTCAAAA+AGG | - | chr2_2:25310861-25310880 | None:intergenic | 20.0% |
| ! | ATGTATGGTTTGATTAATGA+TGG | + | chr2_2:25307623-25307642 | Msa0245540:intron | 25.0% |
| ! | GGTTTATATGTAATTTGAAC+AGG | + | chr2_2:25307644-25307663 | Msa0245540:intron | 25.0% |
| !! | CTTACATTCAACTATAGTTT+TGG | + | chr2_2:25307794-25307813 | Msa0245540:CDS | 25.0% |
| ! | TGATGAAAACTTGAAACATA+AGG | + | chr2_2:25307943-25307962 | Msa0245540:CDS | 25.0% |
| !! | TTTAGTCTTTAATATTGTCC+CGG | + | chr2_2:25308283-25308302 | Msa0245540:intron | 25.0% |
| !! | ATTTTCTATCACAAGTTTTC+CGG | - | chr2_2:25308305-25308324 | None:intergenic | 25.0% |
| !! | GTTTTTAAATGATATGAAGG+TGG | + | chr2_2:25308448-25308467 | Msa0245540:intron | 25.0% |
| ! | AAAGCTTACCAATAGAAAAA+TGG | - | chr2_2:25308945-25308964 | None:intergenic | 25.0% |
| !! | ATTGGTAAGCTTTTATTCTA+TGG | + | chr2_2:25308952-25308971 | Msa0245540:intron | 25.0% |
| ! | ATTGAATCTGATAATCTTGA+TGG | + | chr2_2:25309034-25309053 | Msa0245540:intron | 25.0% |
| !! | TTTGAAGTATATATCGAACT+CGG | + | chr2_2:25309209-25309228 | Msa0245540:intron | 25.0% |
| ! | TGTTATAATTGCAGAAAGAA+AGG | + | chr2_2:25309322-25309341 | Msa0245540:intron | 25.0% |
| ! | GTTATAATTGCAGAAAGAAA+GGG | + | chr2_2:25309323-25309342 | Msa0245540:intron | 25.0% |
| ! | GTTTATTGTATAAACTTTGC+AGG | + | chr2_2:25309807-25309826 | Msa0245540:intron | 25.0% |
| ! | CAAAATTAATAATGCAACAG+AGG | + | chr2_2:25310160-25310179 | Msa0245540:CDS | 25.0% |
| ! | TATTAGATGAATTCAATGGA+TGG | + | chr2_2:25310571-25310590 | Msa0245540:three_prime_UTR | 25.0% |
| ! | CAAAATCCCTAAAAGAATAA+AGG | - | chr2_2:25310753-25310772 | None:intergenic | 25.0% |
| !!! | CTTTATTCTTTTAGGGATTT+TGG | + | chr2_2:25310751-25310770 | Msa0245540:three_prime_UTR | 25.0% |
| ! | ATACATTGTGTCTTAGTAAA+AGG | - | chr2_2:25310892-25310911 | None:intergenic | 25.0% |
| CACTTATGAAATAGGACAAT+TGG | - | chr2_2:25307550-25307569 | None:intergenic | 30.0% | |
| TTTCTTTACTATCATCAGCT+TGG | + | chr2_2:25307741-25307760 | Msa0245540:CDS | 30.0% | |
| TTCTTTACTATCATCAGCTT+GGG | + | chr2_2:25307742-25307761 | Msa0245540:CDS | 30.0% | |
| !!! | TATAGTTTTGGTTCCAAAGA+TGG | + | chr2_2:25307806-25307825 | Msa0245540:CDS | 30.0% |
| !! | CTAGTTGAACTTTTTGTTGT+TGG | - | chr2_2:25307878-25307897 | None:intergenic | 30.0% |
| CAACAACAAAAAGTTCAACT+AGG | + | chr2_2:25307876-25307895 | Msa0245540:CDS | 30.0% | |
| AAAAAGTTCAACTAGGTTAG+AGG | + | chr2_2:25307883-25307902 | Msa0245540:CDS | 30.0% | |
| TTCATCAACATTTGTGTCAA+GGG | - | chr2_2:25307930-25307949 | None:intergenic | 30.0% | |
| TTTCATCAACATTTGTGTCA+AGG | - | chr2_2:25307931-25307950 | None:intergenic | 30.0% | |
| GAAGAGAAAACAACTTCTTT+AGG | - | chr2_2:25307989-25308008 | None:intergenic | 30.0% | |
| ! | TTTTCTATCACAAGTTTTCC+GGG | - | chr2_2:25308304-25308323 | None:intergenic | 30.0% |
| !! | TTTTTCATACAGGTTGGAAA+AGG | + | chr2_2:25308678-25308697 | Msa0245540:intron | 30.0% |
| AGAAAAATGGTTGAGTACTT+TGG | - | chr2_2:25308932-25308951 | None:intergenic | 30.0% | |
| !! | GTACTCAACCATTTTTCTAT+TGG | + | chr2_2:25308934-25308953 | Msa0245540:CDS | 30.0% |
| !! | CTTGATGGTTAACTTTTTGT+AGG | + | chr2_2:25309049-25309068 | Msa0245540:intron | 30.0% |
| ! | ATGGTTAACTTTTTGTAGGT+TGG | + | chr2_2:25309053-25309072 | Msa0245540:intron | 30.0% |
| TTAATCTTGAGAAATGTCCA+AGG | + | chr2_2:25309097-25309116 | Msa0245540:CDS | 30.0% | |
| TAATCTTGAGAAATGTCCAA+GGG | + | chr2_2:25309098-25309117 | Msa0245540:CDS | 30.0% | |
| AATTGTTGAAAAGGGAAAGT+TGG | + | chr2_2:25309359-25309378 | Msa0245540:CDS | 30.0% | |
| !! | AAGTTGGTGTATAGAAAAGA+TGG | + | chr2_2:25309375-25309394 | Msa0245540:CDS | 30.0% |
| ! | AGTTGGTGTATAGAAAAGAT+GGG | + | chr2_2:25309376-25309395 | Msa0245540:CDS | 30.0% |
| AGACTGATGAAAAGTCTAAA+TGG | + | chr2_2:25309409-25309428 | Msa0245540:CDS | 30.0% | |
| TATGTTGGAAGGAAACAAAA+GGG | + | chr2_2:25309462-25309481 | Msa0245540:CDS | 30.0% | |
| ! | TTTTCAACTTCAACGAATTC+AGG | - | chr2_2:25309600-25309619 | None:intergenic | 30.0% |
| AAGTTGAAAATCTTAACCGT+TGG | + | chr2_2:25309610-25309629 | Msa0245540:intron | 30.0% | |
| TATAAACTTTGCAGGCTATT+TGG | + | chr2_2:25309815-25309834 | Msa0245540:intron | 30.0% | |
| !! | AGAATTTGTTAGCTTTCTTG+AGG | + | chr2_2:25309879-25309898 | Msa0245540:CDS | 30.0% |
| ! | ATAGCATATCTCTGAAAAGA+GGG | - | chr2_2:25310014-25310033 | None:intergenic | 30.0% |
| ! | TATAGCATATCTCTGAAAAG+AGG | - | chr2_2:25310015-25310034 | None:intergenic | 30.0% |
| TTGATTGAGAAGTTTGAGTA+GGG | - | chr2_2:25310109-25310128 | None:intergenic | 30.0% | |
| ATTGATTGAGAAGTTTGAGT+AGG | - | chr2_2:25310110-25310129 | None:intergenic | 30.0% | |
| TAGGAGAAATCCTAACTTTA+GGG | - | chr2_2:25310394-25310413 | None:intergenic | 30.0% | |
| !! | AGGCAAGTATTGAAGAAATT+AGG | + | chr2_2:25310463-25310482 | Msa0245540:exon | 30.0% |
| !! | GGCAAGTATTGAAGAAATTA+GGG | + | chr2_2:25310464-25310483 | Msa0245540:three_prime_UTR | 30.0% |
| ! | CTTAGCTGACAATTTTTATG+AGG | - | chr2_2:25310625-25310644 | None:intergenic | 30.0% |
| CTCATAAAAATTGTCAGCTA+AGG | + | chr2_2:25310623-25310642 | Msa0245540:three_prime_UTR | 30.0% | |
| CATAAGAACTACAAGAGAAT+AGG | - | chr2_2:25310835-25310854 | None:intergenic | 30.0% | |
| CTATTCTCTTGTAGTTCTTA+TGG | + | chr2_2:25310833-25310852 | Msa0245540:three_prime_UTR | 30.0% | |
| ! | TTCTTATGGAACCTTTTTGA+AGG | + | chr2_2:25310847-25310866 | Msa0245540:three_prime_UTR | 30.0% |
| CTTCATAAGCTCAACAACAA+AGG | + | chr2_2:25307380-25307399 | Msa0245540:five_prime_UTR | 35.0% | |
| GTGTGAATCTACATCTCTAT+GGG | + | chr2_2:25307710-25307729 | Msa0245540:exon | 35.0% | |
| ATTGTTAGGCATTCACTCTT+TGG | + | chr2_2:25307770-25307789 | Msa0245540:CDS | 35.0% | |
| CAAAATCATAGCACCATCTT+TGG | - | chr2_2:25307822-25307841 | None:intergenic | 35.0% | |
| TCTTTAGGCAAAGAAAGCAA+AGG | - | chr2_2:25307974-25307993 | None:intergenic | 35.0% | |
| ! | TCAAGCTCAAAAACAGGTTT+TGG | - | chr2_2:25308013-25308032 | None:intergenic | 35.0% |
| AAAAATTAGCCCTCCAACAT+TGG | + | chr2_2:25308724-25308743 | Msa0245540:CDS | 35.0% | |
| !! | ACTTTTTGTAGGTTGGATGT+TGG | + | chr2_2:25309060-25309079 | Msa0245540:intron | 35.0% |
| GTCCAAGATATTTAATGCAC+TGG | - | chr2_2:25309137-25309156 | None:intergenic | 35.0% | |
| TAGAAAAGATGGGAAGTTTG+TGG | + | chr2_2:25309386-25309405 | Msa0245540:CDS | 35.0% | |
| TATTTGTTCTTAGCACCACT+AGG | + | chr2_2:25309433-25309452 | Msa0245540:CDS | 35.0% | |
| ATTTGTTCTTAGCACCACTA+GGG | + | chr2_2:25309434-25309453 | Msa0245540:CDS | 35.0% | |
| GTATGTTGGAAGGAAACAAA+AGG | + | chr2_2:25309461-25309480 | Msa0245540:CDS | 35.0% | |
| !! | AACACTCTAGCTTTCTATCT+GGG | + | chr2_2:25309493-25309512 | Msa0245540:CDS | 35.0% |
| AATTCACCTTGACATTAGAG+AGG | - | chr2_2:25309918-25309937 | None:intergenic | 35.0% | |
| ATGATGCACCTTCATTCATT+GGG | + | chr2_2:25310039-25310058 | Msa0245540:CDS | 35.0% | |
| ACCAATAATGTGAGCAACAA+AGG | + | chr2_2:25310134-25310153 | Msa0245540:CDS | 35.0% | |
| TCCTTTGTTGCTCACATTAT+TGG | - | chr2_2:25310138-25310157 | None:intergenic | 35.0% | |
| GGTTAATGCCAAGAAATTTG+AGG | + | chr2_2:25310181-25310200 | Msa0245540:CDS | 35.0% | |
| TCTTGGAAAAGTCAAATGCT+GGG | - | chr2_2:25310208-25310227 | None:intergenic | 35.0% | |
| ATCCTGAACATCTTCAATCA+AGG | + | chr2_2:25310285-25310304 | Msa0245540:CDS | 35.0% | |
| TCCTGAACATCTTCAATCAA+GGG | + | chr2_2:25310286-25310305 | Msa0245540:CDS | 35.0% | |
| CTAGGAGAAATCCTAACTTT+AGG | - | chr2_2:25310395-25310414 | None:intergenic | 35.0% | |
| CTAAAGTTAGGATTTCTCCT+AGG | + | chr2_2:25310393-25310412 | Msa0245540:CDS | 35.0% | |
| GAATTGAGGATAACACAAAC+TGG | + | chr2_2:25310654-25310673 | Msa0245540:three_prime_UTR | 35.0% | |
| TCATTCACCCAAATGATTCA+TGG | + | chr2_2:25310911-25310930 | Msa0245540:three_prime_UTR | 35.0% | |
| GGTGTGAATCTACATCTCTA+TGG | + | chr2_2:25307709-25307728 | Msa0245540:exon | 40.0% | |
| CAGCTTGGGAAGAAATTGTT+AGG | + | chr2_2:25307756-25307775 | Msa0245540:CDS | 40.0% | |
| ! | TGATTGTGCTGTTGTTGTTG+AGG | + | chr2_2:25308093-25308112 | Msa0245540:CDS | 40.0% |
| ! | CTGTTGTTGTTGAGGAACTA+TGG | + | chr2_2:25308101-25308120 | Msa0245540:CDS | 40.0% |
| ! | GATATGAAGGTGGAAAGCAT+TGG | + | chr2_2:25308458-25308477 | Msa0245540:intron | 40.0% |
| AACAAGAAACTGCAGTGTCA+AGG | + | chr2_2:25308529-25308548 | Msa0245540:CDS | 40.0% | |
| ! | TTTTTGTGCCTTGTCATCCT+TGG | - | chr2_2:25308709-25308728 | None:intergenic | 40.0% |
| TTACAGCTTCAAGCCAATGT+TGG | - | chr2_2:25308740-25308759 | None:intergenic | 40.0% | |
| ! | TTTAATGCACTGGCGTTGAA+GGG | - | chr2_2:25309127-25309146 | None:intergenic | 40.0% |
| ! | ATTTAATGCACTGGCGTTGA+AGG | - | chr2_2:25309128-25309147 | None:intergenic | 40.0% |
| CGCCAGTGCATTAAATATCT+TGG | + | chr2_2:25309132-25309151 | Msa0245540:CDS | 40.0% | |
| !! | CAACACTCTAGCTTTCTATC+TGG | + | chr2_2:25309492-25309511 | Msa0245540:CDS | 40.0% |
| !! | ACACTCTAGCTTTCTATCTG+GGG | + | chr2_2:25309494-25309513 | Msa0245540:CDS | 40.0% |
| ATCATCTGATCGTCATCCAA+CGG | - | chr2_2:25309629-25309648 | None:intergenic | 40.0% | |
| ATTGTCCGACCTTTATCTGA+CGG | + | chr2_2:25309700-25309719 | Msa0245540:intron | 40.0% | |
| GAATCTTGACCGTCAGATAA+AGG | - | chr2_2:25309712-25309731 | None:intergenic | 40.0% | |
| ! | GGGTGATAATGACCACTATA+AGG | - | chr2_2:25309841-25309860 | None:intergenic | 40.0% |
| !! | CTCTGAAGTTCTCTTCAGTT+GGG | - | chr2_2:25309861-25309880 | None:intergenic | 40.0% |
| !! | TCTCTGAAGTTCTCTTCAGT+TGG | - | chr2_2:25309862-25309881 | None:intergenic | 40.0% |
| AGTAGACCTCTCTAATGTCA+AGG | + | chr2_2:25309909-25309928 | Msa0245540:CDS | 40.0% | |
| GATGATGCACCTTCATTCAT+TGG | + | chr2_2:25310038-25310057 | Msa0245540:CDS | 40.0% | |
| CTCTTGGAAAAGTCAAATGC+TGG | - | chr2_2:25310209-25310228 | None:intergenic | 40.0% | |
| CCACTTGCATGATAATCTCT+TGG | - | chr2_2:25310225-25310244 | None:intergenic | 40.0% | |
| CCAAGAGATTATCATGCAAG+TGG | + | chr2_2:25310222-25310241 | Msa0245540:CDS | 40.0% | |
| TTATCATGCAAGTGGTCTAC+AGG | + | chr2_2:25310230-25310249 | Msa0245540:CDS | 40.0% | |
| ! | ACATCTTCAATCAAGGGCAT+TGG | + | chr2_2:25310292-25310311 | Msa0245540:CDS | 40.0% |
| TCTGCAAGACCATATAGCTA+TGG | + | chr2_2:25310344-25310363 | Msa0245540:CDS | 40.0% | |
| !! | GAAATCCTAACTTTAGGGCT+TGG | - | chr2_2:25310389-25310408 | None:intergenic | 40.0% |
| AAACAGCAATTGGGGTTCTT+GGG | - | chr2_2:25310442-25310461 | None:intergenic | 40.0% | |
| ACTTGCCTCAAACAGCAATT+GGG | - | chr2_2:25310451-25310470 | None:intergenic | 40.0% | |
| TACTTGCCTCAAACAGCAAT+TGG | - | chr2_2:25310452-25310471 | None:intergenic | 40.0% | |
| TCCAACGTTTGATCTCTGAT+CGG | - | chr2_2:25310517-25310536 | None:intergenic | 40.0% | |
| CAAACGTTGGATTCATCGAA+TGG | + | chr2_2:25310526-25310545 | Msa0245540:three_prime_UTR | 40.0% | |
| CTAAGGTGACACTTGAATTG+AGG | + | chr2_2:25310640-25310659 | Msa0245540:three_prime_UTR | 40.0% | |
| CCTAAGGCCATGAATCATTT+GGG | - | chr2_2:25310921-25310940 | None:intergenic | 40.0% | |
| ! | CCAAATGATTCATGGCCTTA+GGG | + | chr2_2:25310919-25310938 | Msa0245540:three_prime_UTR | 40.0% |
| GTGTCAAGGGTAACATGTTC+TGG | - | chr2_2:25307917-25307936 | None:intergenic | 45.0% | |
| GCAGCATCAAGCTCAAAAAC+AGG | - | chr2_2:25308019-25308038 | None:intergenic | 45.0% | |
| AAGAAACTGCAGTGTCAAGG+TGG | + | chr2_2:25308532-25308551 | Msa0245540:CDS | 45.0% | |
| AGAAACTGCAGTGTCAAGGT+GGG | + | chr2_2:25308533-25308552 | Msa0245540:CDS | 45.0% | |
| GGTTGGAAAAGGTTTGTCCA+AGG | + | chr2_2:25308689-25308708 | Msa0245540:intron | 45.0% | |
| AGGTTTGTCCAAGGATGACA+AGG | + | chr2_2:25308698-25308717 | Msa0245540:CDS | 45.0% | |
| AGCTTCAAGCCAATGTTGGA+GGG | - | chr2_2:25308736-25308755 | None:intergenic | 45.0% | |
| ATTGACCCACGTCATCGTTA+TGG | + | chr2_2:25308867-25308886 | Msa0245540:CDS | 45.0% | |
| TGTGTCCATAACGATGACGT+GGG | - | chr2_2:25308875-25308894 | None:intergenic | 45.0% | |
| TTGTGTCCATAACGATGACG+TGG | - | chr2_2:25308876-25308895 | None:intergenic | 45.0% | |
| ! | TGTAGGTTGGATGTTGGAGA+TGG | + | chr2_2:25309066-25309085 | Msa0245540:intron | 45.0% |
| TATATCGAACTCGGTACCGT+AGG | + | chr2_2:25309218-25309237 | Msa0245540:intron | 45.0% | |
| ATATCGAACTCGGTACCGTA+GGG | + | chr2_2:25309219-25309238 | Msa0245540:intron | 45.0% | |
| ATGATCGGGTCTAATGCATG+TGG | - | chr2_2:25309275-25309294 | None:intergenic | 45.0% | |
| ! | ACCACTAGGGCTTTGTATGT+TGG | + | chr2_2:25309447-25309466 | Msa0245540:CDS | 45.0% |
| TCCAACATACAAAGCCCTAG+TGG | - | chr2_2:25309451-25309470 | None:intergenic | 45.0% | |
| ! | CTAGGGCTTTGTATGTTGGA+AGG | + | chr2_2:25309451-25309470 | Msa0245540:CDS | 45.0% |
| GGAAGATTAGTGGCACAACA+AGG | + | chr2_2:25309534-25309553 | Msa0245540:CDS | 45.0% | |
| CTTGACCGTCAGATAAAGGT+CGG | - | chr2_2:25309708-25309727 | None:intergenic | 45.0% | |
| !! | CAGGCTATTTGGCCTTATAG+TGG | + | chr2_2:25309826-25309845 | Msa0245540:intron | 45.0% |
| !! | GGATTGGTCCCAATGAATGA+AGG | - | chr2_2:25310050-25310069 | None:intergenic | 45.0% |
| TGCTGGGACCTCAAATTTCT+TGG | - | chr2_2:25310192-25310211 | None:intergenic | 45.0% | |
| GCCCTTGATTGAAGATGTTC+AGG | - | chr2_2:25310290-25310309 | None:intergenic | 45.0% | |
| ! | CTATATGGTCTTGCAGAAGC+AGG | - | chr2_2:25310341-25310360 | None:intergenic | 45.0% |
| ! | GGTATTGGGCCATAGCTATA+TGG | - | chr2_2:25310356-25310375 | None:intergenic | 45.0% |
| !! | TTGGCCTTGGAGAAGGTATT+GGG | - | chr2_2:25310370-25310389 | None:intergenic | 45.0% |
| TTCTCCTAGGCTTGCATACA+TGG | + | chr2_2:25310406-25310425 | Msa0245540:CDS | 45.0% | |
| TCTCCTAGGCTTGCATACAT+GGG | + | chr2_2:25310407-25310426 | Msa0245540:CDS | 45.0% | |
| CAAACAGCAATTGGGGTTCT+TGG | - | chr2_2:25310443-25310462 | None:intergenic | 45.0% | |
| !! | AGAACCCCAATTGCTGTTTG+AGG | + | chr2_2:25310443-25310462 | Msa0245540:CDS | 45.0% |
| CTTGCCTCAAACAGCAATTG+GGG | - | chr2_2:25310450-25310469 | None:intergenic | 45.0% | |
| TCGGAGAGAATCTAGTGCAT+AGG | - | chr2_2:25310498-25310517 | None:intergenic | 45.0% | |
| TCCGATCAGAGATCAAACGT+TGG | + | chr2_2:25310513-25310532 | Msa0245540:three_prime_UTR | 45.0% | |
| CCCAAATGATTCATGGCCTT+AGG | + | chr2_2:25310918-25310937 | Msa0245540:three_prime_UTR | 45.0% | |
| CCCTAAGGCCATGAATCATT+TGG | - | chr2_2:25310922-25310941 | None:intergenic | 45.0% | |
| !!! | ATTTTTTCTTATATTTTTTT+TGG | + | chr2_2:25307435-25307454 | Msa0245540:intron | 5.0% |
| GCTTGATGCTGCAGCAACTA+AGG | + | chr2_2:25308027-25308046 | Msa0245540:CDS | 50.0% | |
| GAAACTGCAGTGTCAAGGTG+GGG | + | chr2_2:25308534-25308553 | Msa0245540:CDS | 50.0% | |
| CAGCTTCAAGCCAATGTTGG+AGG | - | chr2_2:25308737-25308756 | None:intergenic | 50.0% | |
| ATGACGTGGGTCAATCTGTG+GGG | - | chr2_2:25308862-25308881 | None:intergenic | 50.0% | |
| GATGACGTGGGTCAATCTGT+GGG | - | chr2_2:25308863-25308882 | None:intergenic | 50.0% | |
| CACTAATCTTCCAGCAGCTG+TGG | - | chr2_2:25309526-25309545 | None:intergenic | 50.0% | |
| CACAGCTGCTGGAAGATTAG+TGG | + | chr2_2:25309524-25309543 | Msa0245540:CDS | 50.0% | |
| ATGGCCCAATACCTTCTCCA+AGG | + | chr2_2:25310363-25310382 | Msa0245540:CDS | 50.0% | |
| !! | CTTGGCCTTGGAGAAGGTAT+TGG | - | chr2_2:25310371-25310390 | None:intergenic | 50.0% |
| !! | CTAACTTTAGGGCTTGGCCT+TGG | - | chr2_2:25310383-25310402 | None:intergenic | 50.0% |
| CAAGGCCAAGCCCTAAAGTT+AGG | + | chr2_2:25310381-25310400 | Msa0245540:CDS | 50.0% | |
| CTCCTAGGCTTGCATACATG+GGG | + | chr2_2:25310408-25310427 | Msa0245540:CDS | 50.0% | |
| TCTCCTACTTCAGTCGTCAG+AGG | - | chr2_2:25310597-25310616 | None:intergenic | 50.0% | |
| TCTGACGACTGAAGTAGGAG+AGG | + | chr2_2:25310596-25310615 | Msa0245540:three_prime_UTR | 50.0% | |
| TGCAGTGTCAAGGTGGGGAA+GGG | + | chr2_2:25308539-25308558 | Msa0245540:CDS | 55.0% | |
| GGCAAGGACAAGAGCAGCTA+AGG | + | chr2_2:25308560-25308579 | Msa0245540:CDS | 55.0% | |
| CGATGACGTGGGTCAATCTG+TGG | - | chr2_2:25308864-25308883 | None:intergenic | 55.0% | |
| GGCACAACAAGGTGTACTCG+AGG | + | chr2_2:25309545-25309564 | Msa0245540:CDS | 55.0% | |
| TGCAAGTGGTCTACAGGAGC+TGG | + | chr2_2:25310236-25310255 | Msa0245540:CDS | 55.0% | |
| ACAGGAGCTGGACCTCGTAT+TGG | + | chr2_2:25310248-25310267 | Msa0245540:CDS | 55.0% | |
| CAGGAGCTGGACCTCGTATT+GGG | + | chr2_2:25310249-25310268 | Msa0245540:CDS | 55.0% | |
| TCACGCACACACCCAATACG+AGG | - | chr2_2:25310263-25310282 | None:intergenic | 55.0% | |
| GGTCTTGCAGAAGCAGGTCT+AGG | - | chr2_2:25310335-25310354 | None:intergenic | 55.0% | |
| !! | TTAGGGCTTGGCCTTGGAGA+AGG | - | chr2_2:25310377-25310396 | None:intergenic | 55.0% |
| AGCCCCATGTATGCAAGCCT+AGG | - | chr2_2:25310413-25310432 | None:intergenic | 55.0% | |
| GCAATTGGGGTTCTTGGGCT+AGG | - | chr2_2:25310437-25310456 | None:intergenic | 55.0% | |
| TGGCCTCTGACGACTGAAGT+AGG | + | chr2_2:25310591-25310610 | Msa0245540:three_prime_UTR | 55.0% | |
| CTGCAGTGTCAAGGTGGGGA+AGG | + | chr2_2:25308538-25308557 | Msa0245540:CDS | 60.0% | |
| TGTCAAGGTGGGGAAGGGCA+AGG | + | chr2_2:25308544-25308563 | Msa0245540:CDS | 60.0% | |
| ! | TGGCGTTGAAGGGTAGCCCT+TGG | - | chr2_2:25309117-25309136 | None:intergenic | 60.0% |
| GGGGCAGCAACCACAGCTGC+TGG | + | chr2_2:25309513-25309532 | Msa0245540:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 25307328 | 25310948 | 25307328 | ID=Msa0245540;Name=Msa0245540 |
| chr2_2 | mRNA | 25307328 | 25310948 | 25307328 | ID=Msa0245540-mRNA-1;Parent=Msa0245540;Name=Msa0245540-mRNA-1;_AED=0.05;_eAED=0.05;_QI=136|1|1|1|0.87|0.77|9|485|508 |
| chr2_2 | exon | 25307328 | 25307401 | 25307328 | ID=Msa0245540-mRNA-1:exon:9549;Parent=Msa0245540-mRNA-1 |
| chr2_2 | exon | 25307666 | 25308122 | 25307666 | ID=Msa0245540-mRNA-1:exon:9550;Parent=Msa0245540-mRNA-1 |
| chr2_2 | exon | 25308467 | 25308581 | 25308467 | ID=Msa0245540-mRNA-1:exon:9551;Parent=Msa0245540-mRNA-1 |
| chr2_2 | exon | 25308690 | 25308755 | 25308690 | ID=Msa0245540-mRNA-1:exon:9552;Parent=Msa0245540-mRNA-1 |
| chr2_2 | exon | 25308867 | 25308955 | 25308867 | ID=Msa0245540-mRNA-1:exon:9553;Parent=Msa0245540-mRNA-1 |
| chr2_2 | exon | 25309071 | 25309158 | 25309071 | ID=Msa0245540-mRNA-1:exon:9554;Parent=Msa0245540-mRNA-1 |
| chr2_2 | exon | 25309336 | 25309566 | 25309336 | ID=Msa0245540-mRNA-1:exon:9555;Parent=Msa0245540-mRNA-1 |
| chr2_2 | exon | 25309829 | 25309930 | 25309829 | ID=Msa0245540-mRNA-1:exon:9556;Parent=Msa0245540-mRNA-1 |
| chr2_2 | exon | 25310023 | 25310948 | 25310023 | ID=Msa0245540-mRNA-1:exon:9557;Parent=Msa0245540-mRNA-1 |
| chr2_2 | five_prime_UTR | 25307328 | 25307401 | 25307328 | ID=Msa0245540-mRNA-1:five_prime_utr;Parent=Msa0245540-mRNA-1 |
| chr2_2 | five_prime_UTR | 25307666 | 25307727 | 25307666 | ID=Msa0245540-mRNA-1:five_prime_utr;Parent=Msa0245540-mRNA-1 |
| chr2_2 | CDS | 25307728 | 25308122 | 25307728 | ID=Msa0245540-mRNA-1:cds;Parent=Msa0245540-mRNA-1 |
| chr2_2 | CDS | 25308467 | 25308581 | 25308467 | ID=Msa0245540-mRNA-1:cds;Parent=Msa0245540-mRNA-1 |
| chr2_2 | CDS | 25308690 | 25308755 | 25308690 | ID=Msa0245540-mRNA-1:cds;Parent=Msa0245540-mRNA-1 |
| chr2_2 | CDS | 25308867 | 25308955 | 25308867 | ID=Msa0245540-mRNA-1:cds;Parent=Msa0245540-mRNA-1 |
| chr2_2 | CDS | 25309071 | 25309158 | 25309071 | ID=Msa0245540-mRNA-1:cds;Parent=Msa0245540-mRNA-1 |
| chr2_2 | CDS | 25309336 | 25309566 | 25309336 | ID=Msa0245540-mRNA-1:cds;Parent=Msa0245540-mRNA-1 |
| chr2_2 | CDS | 25309829 | 25309930 | 25309829 | ID=Msa0245540-mRNA-1:cds;Parent=Msa0245540-mRNA-1 |
| chr2_2 | CDS | 25310023 | 25310463 | 25310023 | ID=Msa0245540-mRNA-1:cds;Parent=Msa0245540-mRNA-1 |
| chr2_2 | three_prime_UTR | 25310464 | 25310948 | 25310464 | ID=Msa0245540-mRNA-1:three_prime_utr;Parent=Msa0245540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
