Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071480 | XP_003590329.1 | 97.067 | 341 | 8 | 1 | 1 | 341 | 1 | 339 | 0.0 | 683 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071480 | sp|Q9ZSD4|SY121_ARATH | 67.246 | 345 | 97 | 4 | 1 | 335 | 1 | 339 | 1.04e-142 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071480 | G7I8J4 | 97.067 | 341 | 8 | 1 | 1 | 341 | 1 | 339 | 0.0 | 683 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004480 | Msa0071480 | 0.822403 | 2.413239e-53 | -8.615850e-47 |
| Msa0011050 | Msa0071480 | 0.817539 | 3.128684e-52 | -8.615850e-47 |
| Msa0012100 | Msa0071480 | 0.813590 | 2.370130e-51 | -8.615850e-47 |
| Msa0015180 | Msa0071480 | 0.815894 | 7.316813e-52 | -8.615850e-47 |
| Msa0030480 | Msa0071480 | 0.814415 | 1.558872e-51 | -8.615850e-47 |
| Msa0033850 | Msa0071480 | 0.822317 | 2.527034e-53 | -8.615850e-47 |
| Msa0048390 | Msa0071480 | 0.820839 | 5.549191e-53 | -8.615850e-47 |
| Msa0059900 | Msa0071480 | 0.820144 | 8.011079e-53 | -8.615850e-47 |
| Msa0060070 | Msa0071480 | 0.834246 | 3.349216e-56 | -8.615850e-47 |
| Msa0071480 | Msa0081620 | 0.804434 | 2.164267e-49 | -8.615850e-47 |
| Msa0071480 | Msa0081940 | 0.823048 | 1.707810e-53 | -8.615850e-47 |
| Msa0071480 | Msa0082050 | 0.820926 | 5.297498e-53 | -8.615850e-47 |
| Msa0071480 | Msa0086560 | 0.825303 | 5.045260e-54 | -8.615850e-47 |
| Msa0071480 | Msa0089850 | 0.809139 | 2.192778e-50 | -8.615850e-47 |
| Msa0071480 | Msa0092410 | 0.800819 | 1.204885e-48 | -8.615850e-47 |
| Msa0071480 | Msa0106530 | 0.808275 | 3.354710e-50 | -8.615850e-47 |
| Msa0071480 | Msa0119440 | 0.927846 | 6.646938e-92 | -8.615850e-47 |
| Msa0071480 | Msa0128430 | 0.837015 | 6.670441e-57 | -8.615850e-47 |
| Msa0071480 | Msa0133100 | 0.812827 | 3.485051e-51 | -8.615850e-47 |
| Msa0071480 | Msa0136630 | 0.861457 | 1.012528e-63 | -8.615850e-47 |
| Msa0071480 | Msa0138900 | 0.815573 | 8.626903e-52 | -8.615850e-47 |
| Msa0071480 | Msa0139000 | 0.807433 | 5.067428e-50 | -8.615850e-47 |
| Msa0071480 | Msa0139670 | 0.814156 | 1.778480e-51 | -8.615850e-47 |
| Msa0071480 | Msa0151220 | 0.838770 | 2.359916e-57 | -8.615850e-47 |
| Msa0071480 | Msa0152560 | 0.805436 | 1.336449e-49 | -8.615850e-47 |
| Msa0071480 | Msa0162690 | 0.878525 | 2.616562e-69 | -8.615850e-47 |
| Msa0071480 | Msa0173960 | 0.807419 | 5.101830e-50 | -8.615850e-47 |
| Msa0071480 | Msa0176260 | 0.837688 | 4.483469e-57 | -8.615850e-47 |
| Msa0071480 | Msa0179100 | 0.890703 | 7.750604e-74 | -8.615850e-47 |
| Msa0071480 | Msa0183910 | 0.806503 | 7.968934e-50 | -8.615850e-47 |
| Msa0071480 | Msa0187310 | 0.835034 | 2.122422e-56 | -8.615850e-47 |
| Msa0071480 | Msa0194010 | 0.812047 | 5.158762e-51 | -8.615850e-47 |
| Msa0071480 | Msa0201570 | 0.813600 | 2.357397e-51 | -8.615850e-47 |
| Msa0071480 | Msa0202930 | 0.803151 | 3.997832e-49 | -8.615850e-47 |
| Msa0071480 | Msa0213430 | 0.893119 | 8.457445e-75 | -8.615850e-47 |
| Msa0071480 | Msa0224130 | 0.820895 | 5.385557e-53 | -8.615850e-47 |
| Msa0071480 | Msa0228530 | 0.804076 | 2.569028e-49 | -8.615850e-47 |
| Msa0071480 | Msa0235880 | 0.812173 | 4.842631e-51 | -8.615850e-47 |
| Msa0071480 | Msa0240270 | 0.837053 | 6.521382e-57 | -8.615850e-47 |
| Msa0071480 | Msa0259440 | 0.867311 | 1.503198e-65 | -8.615850e-47 |
| Msa0071480 | Msa0259580 | 0.863565 | 2.273380e-64 | -8.615850e-47 |
| Msa0071480 | Msa0260530 | 0.804808 | 1.808255e-49 | -8.615850e-47 |
| Msa0071480 | Msa0265270 | 0.815304 | 9.899051e-52 | -8.615850e-47 |
| Msa0071480 | Msa0277410 | 0.805743 | 1.152183e-49 | -8.615850e-47 |
| Msa0071480 | Msa0282720 | 0.818527 | 1.871074e-52 | -8.615850e-47 |
| Msa0071480 | Msa0284240 | 0.832090 | 1.152560e-55 | -8.615850e-47 |
| Msa0071480 | Msa0284450 | 0.810450 | 1.145528e-50 | -8.615850e-47 |
| Msa0071480 | Msa0292790 | 0.821571 | 3.760883e-53 | -8.615850e-47 |
| Msa0071480 | Msa0305620 | 0.860410 | 2.106626e-63 | -8.615850e-47 |
| Msa0071480 | Msa0319290 | 0.803857 | 2.853267e-49 | -8.615850e-47 |
| Msa0071480 | Msa0347750 | 0.807593 | 4.686462e-50 | -8.615850e-47 |
| Msa0071480 | Msa0358110 | 0.859150 | 5.045558e-63 | -8.615850e-47 |
| Msa0071480 | Msa0358120 | 0.834064 | 3.719799e-56 | -8.615850e-47 |
| Msa0071480 | Msa0364790 | 0.845768 | 3.305795e-59 | -8.615850e-47 |
| Msa0071480 | Msa0372460 | 0.802220 | 6.221253e-49 | -8.615850e-47 |
| Msa0071480 | Msa0380600 | 0.866430 | 2.867032e-65 | -8.615850e-47 |
| Msa0071480 | Msa0408340 | 0.831280 | 1.825726e-55 | -8.615850e-47 |
| Msa0071480 | Msa0418400 | 0.861107 | 1.294509e-63 | -8.615850e-47 |
| Msa0071480 | Msa0426560 | 0.800320 | 1.523443e-48 | -8.615850e-47 |
| Msa0071480 | Msa0430240 | 0.871538 | 6.334212e-67 | -8.615850e-47 |
| Msa0071480 | Msa0437070 | 0.837847 | 4.083339e-57 | -8.615850e-47 |
| Msa0071480 | Msa0456770 | 0.814007 | 1.918473e-51 | -8.615850e-47 |
| Msa0071480 | Msa0463490 | 0.809178 | 2.151841e-50 | -8.615850e-47 |
| Msa0071480 | Msa0472710 | 0.858206 | 9.660971e-63 | -8.615850e-47 |
| Msa0071480 | Msa0472720 | 0.831645 | 1.484151e-55 | -8.615850e-47 |
| Msa0071480 | Msa0472760 | 0.805677 | 1.189168e-49 | -8.615850e-47 |
| Msa0071480 | Msa0472770 | 0.859148 | 5.054460e-63 | -8.615850e-47 |
| Msa0071480 | Msa0482280 | 0.835013 | 2.148321e-56 | -8.615850e-47 |
| Msa0071480 | Msa0500400 | 0.843631 | 1.244112e-58 | -8.615850e-47 |
| Msa0071480 | Msa0534870 | 0.815719 | 8.006168e-52 | -8.615850e-47 |
| Msa0071480 | Msa0538160 | 0.811634 | 6.345632e-51 | -8.615850e-47 |
| Msa0071480 | Msa0548530 | 0.803823 | 2.900576e-49 | -8.615850e-47 |
| Msa0071480 | Msa0576750 | 0.800550 | 1.367502e-48 | -8.615850e-47 |
| Msa0071480 | Msa0583670 | 0.828020 | 1.134059e-54 | -8.615850e-47 |
| Msa0071480 | Msa0631320 | 0.822251 | 2.617409e-53 | -8.615850e-47 |
| Msa0071480 | Msa0697570 | 0.818942 | 1.506474e-52 | -8.615850e-47 |
| Msa0071480 | Msa0709120 | 0.812627 | 3.855128e-51 | -8.615850e-47 |
| Msa0071480 | Msa0724370 | 0.847279 | 1.278707e-59 | -8.615850e-47 |
| Msa0071480 | Msa0748660 | 0.884271 | 2.211117e-71 | -8.615850e-47 |
| Msa0071480 | Msa0758250 | 0.823704 | 1.200338e-53 | -8.615850e-47 |
| Msa0071480 | Msa0764920 | 0.850957 | 1.213178e-60 | -8.615850e-47 |
| Msa0071480 | Msa0769720 | 0.845845 | 3.149398e-59 | -8.615850e-47 |
| Msa0071480 | Msa0775560 | 0.811742 | 6.013546e-51 | -8.615850e-47 |
| Msa0071480 | Msa0775920 | 0.836442 | 9.336370e-57 | -8.615850e-47 |
| Msa0071480 | Msa0812950 | 0.810669 | 1.027622e-50 | -8.615850e-47 |
| Msa0071480 | Msa0813260 | 0.830635 | 2.628751e-55 | -8.615850e-47 |
| Msa0071480 | Msa0844610 | 0.809914 | 1.494899e-50 | -8.615850e-47 |
| Msa0071480 | Msa0853810 | 0.829613 | 4.666304e-55 | -8.615850e-47 |
| Msa0071480 | Msa0860250 | 0.851165 | 1.060019e-60 | -8.615850e-47 |
| Msa0071480 | Msa0865970 | 0.857372 | 1.707782e-62 | -8.615850e-47 |
| Msa0071480 | Msa0866070 | 0.849462 | 3.183862e-60 | -8.615850e-47 |
| Msa0071480 | Msa0899400 | 0.807489 | 4.929825e-50 | -8.615850e-47 |
| Msa0071480 | Msa0945130 | 0.805211 | 1.489516e-49 | -8.615850e-47 |
| Msa0071480 | Msa0968050 | 0.847517 | 1.100360e-59 | -8.615850e-47 |
| Msa0071480 | Msa0973070 | 0.818025 | 2.430719e-52 | -8.615850e-47 |
| Msa0071480 | Msa1034700 | 0.839764 | 1.303317e-57 | -8.615850e-47 |
| Msa0071480 | Msa1043120 | 0.854887 | 9.123410e-62 | -8.615850e-47 |
| Msa0071480 | Msa1063370 | 0.824564 | 7.537940e-54 | -8.615850e-47 |
| Msa0071480 | Msa1074540 | 0.855893 | 4.646854e-62 | -8.615850e-47 |
| Msa0071480 | Msa1078330 | 0.824319 | 8.609156e-54 | -8.615850e-47 |
| Msa0071480 | Msa1108720 | 0.845780 | 3.279727e-59 | -8.615850e-47 |
| Msa0071480 | Msa1123720 | 0.829039 | 6.434578e-55 | -8.615850e-47 |
| Msa0071480 | Msa1152410 | 0.813365 | 2.655887e-51 | -8.615850e-47 |
| Msa0071480 | Msa1156820 | 0.810561 | 1.084096e-50 | -8.615850e-47 |
| Msa0071480 | Msa1162060 | 0.809262 | 2.064484e-50 | -8.615850e-47 |
| Msa0071480 | Msa1184780 | 0.802720 | 4.907514e-49 | -8.615850e-47 |
| Msa0071480 | Msa1189970 | 0.808006 | 3.828558e-50 | -8.615850e-47 |
| Msa0071480 | Msa1214170 | 0.806267 | 8.939546e-50 | -8.615850e-47 |
| Msa0071480 | Msa1218160 | 0.801509 | 8.709075e-49 | -8.615850e-47 |
| Msa0071480 | Msa1220880 | 0.809651 | 1.703243e-50 | -8.615850e-47 |
| Msa0071480 | Msa1234620 | 0.813161 | 2.944710e-51 | -8.615850e-47 |
| Msa0071480 | Msa1238680 | 0.829641 | 4.595627e-55 | -8.615850e-47 |
| Msa0071480 | Msa1238690 | 0.813070 | 3.082612e-51 | -8.615850e-47 |
| Msa0071480 | Msa1253660 | 0.802722 | 4.903096e-49 | -8.615850e-47 |
| Msa0071480 | Msa1258470 | 0.813758 | 2.176080e-51 | -8.615850e-47 |
| Msa0071480 | Msa1258670 | 0.835938 | 1.253533e-56 | -8.615850e-47 |
| Msa0071480 | Msa1260680 | 0.837709 | 4.429494e-57 | -8.615850e-47 |
| Msa0071480 | Msa1266170 | 0.803190 | 3.924151e-49 | -8.615850e-47 |
| Msa0071480 | Msa1280170 | 0.818447 | 1.951218e-52 | -8.615850e-47 |
| Msa0071480 | Msa1285200 | 0.864756 | 9.671076e-65 | -8.615850e-47 |
| Msa0071480 | Msa1361250 | 0.813872 | 2.054343e-51 | -8.615850e-47 |
| Msa0071480 | Msa1364080 | 0.806551 | 7.785789e-50 | -8.615850e-47 |
| Msa0071480 | Msa1367530 | 0.802858 | 4.594933e-49 | -8.615850e-47 |
| Msa0071480 | Msa1389760 | 0.826957 | 2.040031e-54 | -8.615850e-47 |
| Msa0071480 | Msa1399260 | 0.812864 | 3.421444e-51 | -8.615850e-47 |
| Msa0071480 | Msa1405220 | 0.803324 | 3.681474e-49 | -8.615850e-47 |
| Msa0071480 | Msa1421900 | 0.854531 | 1.157022e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071480 | MtrunA17_Chr1g0177131 | 97.067 | 341 | 8 | 1 | 1 | 341 | 1 | 339 | 0.0 | 683 |
| Msa0071480 | MtrunA17_Chr1g0177121 | 68.259 | 293 | 83 | 4 | 1 | 291 | 1 | 285 | 9.87e-145 | 410 |
| Msa0071480 | MtrunA17_Chr4g0048121 | 58.644 | 295 | 105 | 2 | 1 | 293 | 1 | 280 | 2.60e-124 | 359 |
| Msa0071480 | MtrunA17_Chr7g0267551 | 56.314 | 293 | 109 | 2 | 1 | 293 | 1 | 274 | 9.63e-117 | 339 |
| Msa0071480 | MtrunA17_Chr2g0281201 | 60.976 | 246 | 96 | 0 | 61 | 306 | 1 | 246 | 1.87e-113 | 330 |
| Msa0071480 | MtrunA17_Chr5g0398891 | 48.583 | 247 | 126 | 1 | 46 | 291 | 50 | 296 | 9.39e-84 | 256 |
| Msa0071480 | MtrunA17_Chr6g0461261 | 44.127 | 315 | 157 | 2 | 1 | 312 | 1 | 299 | 5.92e-79 | 243 |
| Msa0071480 | MtrunA17_Chr2g0322801 | 43.770 | 313 | 168 | 3 | 1 | 313 | 1 | 305 | 2.65e-75 | 234 |
| Msa0071480 | MtrunA17_Chr5g0404401 | 41.129 | 248 | 136 | 2 | 46 | 292 | 40 | 278 | 3.85e-60 | 195 |
| Msa0071480 | MtrunA17_Chr8g0370611 | 43.373 | 83 | 47 | 0 | 46 | 128 | 40 | 122 | 6.48e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071480 | AT3G11820.2 | 69.836 | 305 | 83 | 2 | 39 | 335 | 5 | 308 | 9.54e-144 | 409 |
| Msa0071480 | AT3G11820.1 | 67.246 | 345 | 97 | 4 | 1 | 335 | 1 | 339 | 1.05e-143 | 410 |
| Msa0071480 | AT1G61290.1 | 57.516 | 306 | 116 | 3 | 1 | 306 | 1 | 292 | 2.86e-127 | 367 |
| Msa0071480 | AT1G61290.2 | 57.516 | 306 | 116 | 3 | 1 | 306 | 1 | 292 | 2.86e-127 | 367 |
| Msa0071480 | AT3G52400.1 | 62.222 | 315 | 115 | 2 | 1 | 315 | 1 | 311 | 1.16e-124 | 362 |
| Msa0071480 | AT1G11250.1 | 59.386 | 293 | 100 | 2 | 1 | 293 | 1 | 274 | 4.77e-124 | 358 |
| Msa0071480 | AT4G03330.1 | 57.388 | 291 | 113 | 2 | 1 | 291 | 1 | 280 | 3.38e-117 | 341 |
| Msa0071480 | AT3G03800.2 | 44.904 | 314 | 157 | 2 | 1 | 312 | 1 | 300 | 9.30e-81 | 248 |
| Msa0071480 | AT3G03800.1 | 44.904 | 314 | 157 | 2 | 1 | 312 | 1 | 300 | 9.30e-81 | 248 |
| Msa0071480 | AT1G08560.1 | 42.177 | 294 | 159 | 4 | 1 | 291 | 1 | 286 | 3.02e-76 | 237 |
| Msa0071480 | AT5G08080.1 | 45.223 | 314 | 159 | 2 | 1 | 314 | 1 | 301 | 3.27e-71 | 224 |
| Msa0071480 | AT5G08080.4 | 45.223 | 314 | 159 | 2 | 1 | 314 | 1 | 301 | 3.27e-71 | 224 |
| Msa0071480 | AT5G08080.3 | 43.692 | 325 | 159 | 4 | 1 | 314 | 1 | 312 | 4.96e-69 | 219 |
| Msa0071480 | AT2G18260.2 | 39.773 | 264 | 152 | 2 | 46 | 309 | 46 | 302 | 2.26e-60 | 196 |
| Msa0071480 | AT2G18260.1 | 39.773 | 264 | 152 | 2 | 46 | 309 | 46 | 302 | 2.26e-60 | 196 |
| Msa0071480 | AT5G08080.5 | 40.376 | 213 | 114 | 2 | 1 | 213 | 1 | 200 | 4.72e-34 | 125 |
| Msa0071480 | AT5G08080.2 | 40.376 | 213 | 114 | 2 | 1 | 213 | 1 | 200 | 4.72e-34 | 125 |
Find 135 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATGCGGCGAACCGGAATT+TGG | 0.208941 | 1_2:-43420116 | Msa0071480:CDS |
| TCCTGCTCCTGCTCCGGTTC+TGG | 0.254484 | 1_2:+43420366 | None:intergenic |
| CCCGTCACCTCCTCCTCCTT+CGG | 0.261959 | 1_2:-43418296 | Msa0071480:CDS |
| TTCGGGTGGTACTTAATCTT+AGG | 0.262579 | 1_2:-43418278 | Msa0071480:exon |
| CCTCTCTTGAATTTCATTGA+TGG | 0.265261 | 1_2:+43418642 | None:intergenic |
| AGTTTCTGTGGCGTTGAAAA+AGG | 0.271121 | 1_2:-43420179 | Msa0071480:CDS |
| ACAAGGCAGGGGAAGAATTC+TGG | 0.274465 | 1_2:-43418668 | Msa0071480:CDS |
| CTATAAACTTCTATGAATAT+TGG | 0.283222 | 1_2:-43418239 | Msa0071480:three_prime_UTR |
| GAAGAAGTTGAAGGATTCTA+TGG | 0.286048 | 1_2:-43420032 | Msa0071480:CDS |
| TACAAAATTAACAAATTCAT+TGG | 0.295484 | 1_2:+43417865 | None:intergenic |
| TCCATTTCCTTGTGTTTCTC+TGG | 0.322362 | 1_2:+43418443 | None:intergenic |
| TTTAGCATCGTGAACCGTTT+TGG | 0.332874 | 1_2:+43420237 | None:intergenic |
| CCGTCACCTCCTCCTCCTTC+GGG | 0.338871 | 1_2:-43418295 | Msa0071480:CDS |
| GTCCACACCCTTCCAAATTC+CGG | 0.357098 | 1_2:+43420104 | None:intergenic |
| TGAAGATGACCCTTCATATA+TGG | 0.360758 | 1_2:+43417787 | None:intergenic |
| TAGAAGTATAATACAATAAC+AGG | 0.363828 | 1_2:+43418420 | None:intergenic |
| TTGAATTGCTTTCTGAAGAA+AGG | 0.380131 | 1_2:+43418693 | None:intergenic |
| GCCAGAACCGGAGCAGGAGC+AGG | 0.387573 | 1_2:-43420367 | Msa0071480:CDS |
| GCTGCTGCATTTCTCTGCCT+TGG | 0.390226 | 1_2:+43417897 | None:intergenic |
| CCGAAGGAGGAGGAGGTGAC+GGG | 0.392162 | 1_2:+43418296 | None:intergenic |
| ACTCGGAGTTCGGTGGTGAA+TGG | 0.395699 | 1_2:-43420061 | Msa0071480:CDS |
| TAACTGTATCTGTAATTATG+AGG | 0.405646 | 1_2:-43417827 | Msa0071480:three_prime_UTR |
| CTCGGAGTTCGGTGGTGAAT+GGG | 0.417634 | 1_2:-43420060 | Msa0071480:CDS |
| GTCGGACCGGACTCGGAGTT+CGG | 0.418156 | 1_2:-43420071 | Msa0071480:CDS |
| ACAGTTTCAAGGTGAGCAAT+TGG | 0.421621 | 1_2:-43418545 | Msa0071480:CDS |
| GCCGGTGCCGGAGCCAGAAC+CGG | 0.424735 | 1_2:-43420379 | Msa0071480:CDS |
| TTATGAGGGTAAATATGATA+TGG | 0.432575 | 1_2:-43417812 | Msa0071480:three_prime_UTR |
| TCGGGTGGTACTTAATCTTA+GGG | 0.433403 | 1_2:-43418277 | Msa0071480:exon |
| TATTATTTCAATCCATGAAA+AGG | 0.435772 | 1_2:-43418157 | Msa0071480:three_prime_UTR |
| GTTCGTCGTCGGACCGGACT+CGG | 0.443712 | 1_2:-43420078 | Msa0071480:CDS |
| CCTTGCAGTTTGTAACTGTT+CGG | 0.445129 | 1_2:+43418471 | None:intergenic |
| CCCGAAGGAGGAGGAGGTGA+CGG | 0.445219 | 1_2:+43418295 | None:intergenic |
| AAAGATCTAATGCGGCGAAC+CGG | 0.447098 | 1_2:-43420123 | Msa0071480:CDS |
| TCCTGCTCCGGTTCTGGCTC+CGG | 0.449585 | 1_2:+43420372 | None:intergenic |
| TAAAATGATGGAGTAGGATA+AGG | 0.450953 | 1_2:+43420588 | None:intergenic |
| GAATTTGGAAGGGTGTGGAC+CGG | 0.454152 | 1_2:-43420101 | Msa0071480:CDS |
| AATGATAGTGGAGGCGGTGG+GGG | 0.457534 | 1_2:-43418346 | Msa0071480:CDS |
| CTAGAAAGGAATGGTTGGTT+GGG | 0.457734 | 1_2:-43418107 | Msa0071480:three_prime_UTR |
| ACCAGAGAAACACAAGGAAA+TGG | 0.460665 | 1_2:-43418444 | Msa0071480:CDS |
| CGTTAGTCTTTGAAAGTCGT+TGG | 0.461595 | 1_2:+43420266 | None:intergenic |
| TCTACCTCCTGCTCCTGCTC+CGG | 0.464831 | 1_2:+43420360 | None:intergenic |
| TCCGGTTCTGGCTCCGGCAC+CGG | 0.466567 | 1_2:+43420378 | None:intergenic |
| TCAATGGATATTTAAAATGA+TGG | 0.468753 | 1_2:+43420576 | None:intergenic |
| CCATGGCAACATAATGATAG+TGG | 0.472933 | 1_2:-43418358 | Msa0071480:CDS |
| CATAATGATAGTGGAGGCGG+TGG | 0.476400 | 1_2:-43418349 | Msa0071480:CDS |
| CTTGATCTATTGATCTCTAC+TGG | 0.477120 | 1_2:-43419908 | Msa0071480:intron |
| GCCGGAGCCAGAACCGGAGC+AGG | 0.479795 | 1_2:-43420373 | Msa0071480:CDS |
| ATTTCAATCCATGAAAAGGT+TGG | 0.480852 | 1_2:-43418153 | Msa0071480:three_prime_UTR |
| CCACTATCATTATGTTGCCA+TGG | 0.481591 | 1_2:+43418358 | None:intergenic |
| AAGCAATTCAAGAACAAGGC+AGG | 0.485542 | 1_2:-43418681 | Msa0071480:CDS |
| ACAGTTATGGTACAGTTTCA+AGG | 0.486936 | 1_2:-43418556 | Msa0071480:CDS |
| CGAAGGAGGAGGAGGTGACG+GGG | 0.489563 | 1_2:+43418297 | None:intergenic |
| AAATTAACAAATTCATTGGA+TGG | 0.491817 | 1_2:+43417869 | None:intergenic |
| TCGATGACGTGGTGCCGGTC+CGG | 0.492087 | 1_2:+43420415 | None:intergenic |
| GACCGGGTTCGTCGTCGGAC+CGG | 0.493595 | 1_2:-43420084 | Msa0071480:CDS |
| TCTAGAAAGGAATGGTTGGT+TGG | 0.494379 | 1_2:-43418108 | Msa0071480:three_prime_UTR |
| AATTTGGAAGGGTGTGGACC+GGG | 0.502653 | 1_2:-43420100 | Msa0071480:CDS |
| ATGACAGACGGTGCCGGTGC+CGG | 0.503950 | 1_2:-43420391 | Msa0071480:CDS |
| TCACCACCGAACTCCGAGTC+CGG | 0.505149 | 1_2:+43420065 | None:intergenic |
| TGATATGGTGCCATATATGA+AGG | 0.506197 | 1_2:-43417797 | Msa0071480:three_prime_UTR |
| TCATCTCGATGACGTGGTGC+CGG | 0.507346 | 1_2:+43420410 | None:intergenic |
| AGATCAAGAGTCTTATCATC+AGG | 0.511696 | 1_2:+43419923 | None:intergenic |
| GTCCGGTCCGACGACGAACC+CGG | 0.518102 | 1_2:+43420082 | None:intergenic |
| TAGTCTTTGAAAGTCGTTGG+TGG | 0.523923 | 1_2:+43420269 | None:intergenic |
| CTTGATCGTGGTTCTTGCCA+CGG | 0.525394 | 1_2:-43418386 | Msa0071480:CDS |
| GTTCCTCGACATGACAGTTA+TGG | 0.527074 | 1_2:-43418569 | Msa0071480:CDS |
| GTGGGGTCTGTAATCTAGAA+AGG | 0.527411 | 1_2:-43418121 | Msa0071480:three_prime_UTR |
| CTGTCATGTCGAGGAACACT+TGG | 0.530452 | 1_2:+43418575 | None:intergenic |
| AATTAACAAATTCATTGGAT+GGG | 0.531430 | 1_2:+43417870 | None:intergenic |
| TGGGTTGAAGAAGAAGTTGA+AGG | 0.539071 | 1_2:-43420041 | Msa0071480:CDS |
| GAAGCTGAAGCTGGAGGCGT+TGG | 0.540329 | 1_2:-43420146 | Msa0071480:CDS |
| GACTAACGAACAAACCAAAA+CGG | 0.542337 | 1_2:-43420251 | Msa0071480:CDS |
| GAAGGAGCTTCGTTCACGTA+TGG | 0.543242 | 1_2:-43420209 | Msa0071480:CDS |
| GAAGATGGTGAAGCTGAAGC+TGG | 0.544305 | 1_2:-43420155 | Msa0071480:CDS |
| GATATTTAAAATGATGGAGT+AGG | 0.546377 | 1_2:+43420582 | None:intergenic |
| GCATGACGCTGTCAAAGACT+TGG | 0.549313 | 1_2:-43418620 | Msa0071480:CDS |
| GATTGAAATAATAAAACTGT+AGG | 0.549854 | 1_2:+43418167 | None:intergenic |
| TAATGATAGTGGAGGCGGTG+GGG | 0.551632 | 1_2:-43418347 | Msa0071480:CDS |
| GCGGCGAACCGGAATTTGGA+AGG | 0.552312 | 1_2:-43420112 | Msa0071480:CDS |
| AACCGGAATTTGGAAGGGTG+TGG | 0.552955 | 1_2:-43420106 | Msa0071480:CDS |
| ACGAGCTCGCCCTCGCCACA+TGG | 0.555170 | 1_2:+43418509 | None:intergenic |
| GTAATCTAGAAAGGAATGGT+TGG | 0.557247 | 1_2:-43418112 | Msa0071480:three_prime_UTR |
| AGAACCGGAGCAGGAGCAGG+AGG | 0.558904 | 1_2:-43420364 | Msa0071480:CDS |
| AACTGTATCTGTAATTATGA+GGG | 0.559085 | 1_2:-43417826 | Msa0071480:three_prime_UTR |
| GTGAAGAAGTTTCACCGGAC+CGG | 0.559293 | 1_2:-43420429 | Msa0071480:CDS |
| TAAGTACCACCCGAAGGAGG+AGG | 0.565613 | 1_2:+43418286 | None:intergenic |
| GTGTGGACCGGGTTCGTCGT+CGG | 0.566796 | 1_2:-43420089 | Msa0071480:CDS |
| AGACTTGGAGAAGAGTCTAC+TGG | 0.566833 | 1_2:-43418605 | Msa0071480:CDS |
| GTACCACCCGAAGGAGGAGG+AGG | 0.568216 | 1_2:+43418289 | None:intergenic |
| ATTGATCATTGTCTTGATCG+TGG | 0.570829 | 1_2:-43418398 | Msa0071480:CDS |
| AGCAATTCAAGAACAAGGCA+GGG | 0.573394 | 1_2:-43418680 | Msa0071480:CDS |
| CAGAAAGCAATTCAAGAACA+AGG | 0.578887 | 1_2:-43418685 | Msa0071480:CDS |
| CAACATAATGATAGTGGAGG+CGG | 0.579137 | 1_2:-43418352 | Msa0071480:CDS |
| AAAACGGTTCACGATGCTAA+AGG | 0.580222 | 1_2:-43420235 | Msa0071480:CDS |
| CCGTAGTGAAGAAGTTTCAC+CGG | 0.580387 | 1_2:-43420434 | Msa0071480:CDS |
| ATCGAGATGACAGACGGTGC+CGG | 0.580893 | 1_2:-43420397 | Msa0071480:CDS |
| AAATTCTTCGACGACGTCGA+AGG | 0.582409 | 1_2:-43420325 | Msa0071480:CDS |
| ATAATGATAGTGGAGGCGGT+GGG | 0.590164 | 1_2:-43418348 | Msa0071480:CDS |
| TTGGAAGGGTGTGACTAACA+TGG | 0.595421 | 1_2:-43418195 | Msa0071480:three_prime_UTR |
| AAAAGGTTGGATGATGAATG+TGG | 0.601396 | 1_2:-43418140 | Msa0071480:three_prime_UTR |
| GTCTGTAATCTAGAAAGGAA+TGG | 0.602221 | 1_2:-43418116 | Msa0071480:three_prime_UTR |
| AAAGGTTGGATGATGAATGT+GGG | 0.611605 | 1_2:-43418139 | Msa0071480:three_prime_UTR |
| GCAATTCAAGAACAAGGCAG+GGG | 0.612361 | 1_2:-43418679 | Msa0071480:CDS |
| TATCGAGAGCCATGTGGCGA+GGG | 0.613532 | 1_2:-43418518 | Msa0071480:CDS |
| TCACGATGCTAAAGGAGTGA+AGG | 0.617381 | 1_2:-43420227 | Msa0071480:CDS |
| GAAGGAGGAGGAGGTGACGG+GGG | 0.620690 | 1_2:+43418298 | None:intergenic |
| GCGAGCTCGTTTGTGCACAC+TGG | 0.621398 | 1_2:-43418496 | Msa0071480:CDS |
| CGTCGTCGAAGAATTTGTCG+AGG | 0.622912 | 1_2:+43420332 | None:intergenic |
| ATATCGAGAGCCATGTGGCG+AGG | 0.623389 | 1_2:-43418519 | Msa0071480:CDS |
| TTCTTGCCACGGTGAAACCA+TGG | 0.631742 | 1_2:-43418375 | Msa0071480:CDS |
| GATGGTGAAGCTGAAGCTGG+AGG | 0.632553 | 1_2:-43420152 | Msa0071480:CDS |
| AAAATGAACAACTTATTCAG+CGG | 0.633088 | 1_2:-43420472 | Msa0071480:CDS |
| TCACCTCCTCCTCCTTCGGG+TGG | 0.636070 | 1_2:-43418292 | Msa0071480:CDS |
| GATATGGTGCCATATATGAA+GGG | 0.643445 | 1_2:-43417796 | Msa0071480:three_prime_UTR |
| AAAGAAGATAATTTATTACG+CGG | 0.646434 | 1_2:+43417949 | None:intergenic |
| CGGCGAACCGGAATTTGGAA+GGG | 0.647953 | 1_2:-43420111 | Msa0071480:CDS |
| TATGGACGAAGAAGTTTCTG+TGG | 0.652355 | 1_2:-43420191 | Msa0071480:CDS |
| CGTCTGTCATCTCGATGACG+TGG | 0.652928 | 1_2:+43420404 | None:intergenic |
| CCGAACAGTTACAAACTGCA+AGG | 0.655391 | 1_2:-43418471 | Msa0071480:CDS |
| GATTAAGTACCACCCGAAGG+AGG | 0.656702 | 1_2:+43418283 | None:intergenic |
| GGACCGGACTCGGAGTTCGG+TGG | 0.657901 | 1_2:-43420068 | Msa0071480:CDS |
| CCGGTGAAACTTCTTCACTA+CGG | 0.658758 | 1_2:+43420434 | None:intergenic |
| CACGTCATCGAGATGACAGA+CGG | 0.659715 | 1_2:-43420403 | Msa0071480:CDS |
| GGCGTTGGAAAGATCTAATG+CGG | 0.661113 | 1_2:-43420131 | Msa0071480:CDS |
| GTACCATAACTGTCATGTCG+AGG | 0.662556 | 1_2:+43418566 | None:intergenic |
| CCATCAATGAAATTCAAGAG+AGG | 0.665676 | 1_2:-43418642 | Msa0071480:CDS |
| TGTGAGGCTCAATTAAACCA+AGG | 0.667282 | 1_2:-43417914 | Msa0071480:three_prime_UTR |
| TTTGCGTGAAGTTATTACGA+CGG | 0.672599 | 1_2:-43419996 | Msa0071480:CDS |
| AAGGTTGGATGATGAATGTG+GGG | 0.674223 | 1_2:-43418138 | Msa0071480:three_prime_UTR |
| TGGCAACATAATGATAGTGG+AGG | 0.674274 | 1_2:-43418355 | Msa0071480:CDS |
| TAAGATTAAGTACCACCCGA+AGG | 0.686561 | 1_2:+43418280 | None:intergenic |
| GGAAGCACCAGAGAAACACA+AGG | 0.690964 | 1_2:-43418450 | Msa0071480:CDS |
| ATGAAGGGTCATCTTCATCG+TGG | 0.725311 | 1_2:-43417781 | Msa0071480:three_prime_UTR |
| GGATGATATCGAGAGCCATG+TGG | 0.741101 | 1_2:-43418524 | Msa0071480:CDS |
| ATGTTGCCATGGTTTCACCG+TGG | 0.746888 | 1_2:+43418369 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGATAAAAATTTATTAGT+AGG | - | chr1_2:43418617-43418636 | Msa0071480:CDS | 10.0% |
| !! | AAATTTATTAGTAGGTTAAT+TGG | - | chr1_2:43418625-43418644 | Msa0071480:CDS | 15.0% |
| !! | TACAAAATTAACAAATTCAT+TGG | + | chr1_2:43420507-43420526 | None:intergenic | 15.0% |
| !!! | TCAATGGATATTTAAAATGA+TGG | + | chr1_2:43417796-43417815 | None:intergenic | 20.0% |
| !!! | GTATGAATGTTTTAAAATCT+AGG | - | chr1_2:43418559-43418578 | Msa0071480:CDS | 20.0% |
| !!! | TTAATTGGTGTTTTAGATTA+TGG | - | chr1_2:43418640-43418659 | Msa0071480:CDS | 20.0% |
| !!! | TTTAAAGATAACTTGTTTGT+TGG | - | chr1_2:43419544-43419563 | Msa0071480:intron | 20.0% |
| !!! | TTAAAGATAACTTGTTTGTT+GGG | - | chr1_2:43419545-43419564 | Msa0071480:intron | 20.0% |
| !!! | TTTGTCTTTTAATTAAGTTC+AGG | - | chr1_2:43419592-43419611 | Msa0071480:intron | 20.0% |
| !!! | TAGAAGTATAATACAATAAC+AGG | + | chr1_2:43419952-43419971 | None:intergenic | 20.0% |
| !! | CTATAAACTTCTATGAATAT+TGG | - | chr1_2:43420130-43420149 | Msa0071480:CDS | 20.0% |
| !!! | ATTGGTTAAATCATGTTTTT+AGG | - | chr1_2:43420148-43420167 | Msa0071480:CDS | 20.0% |
| !! | GATTGAAATAATAAAACTGT+AGG | + | chr1_2:43420205-43420224 | None:intergenic | 20.0% |
| !! | TATTATTTCAATCCATGAAA+AGG | - | chr1_2:43420212-43420231 | Msa0071480:CDS | 20.0% |
| !! | AAAGAAGATAATTTATTACG+CGG | + | chr1_2:43420423-43420442 | None:intergenic | 20.0% |
| !! | AATTAACAAATTCATTGGAT+GGG | + | chr1_2:43420502-43420521 | None:intergenic | 20.0% |
| !! | AAATTAACAAATTCATTGGA+TGG | + | chr1_2:43420503-43420522 | None:intergenic | 20.0% |
| !! | GATATTTAAAATGATGGAGT+AGG | + | chr1_2:43417790-43417809 | None:intergenic | 25.0% |
| !!! | TTGTTCATTTTTTTGTGTGT+GGG | + | chr1_2:43417888-43417907 | None:intergenic | 25.0% |
| ! | AAAATGAACAACTTATTCAG+CGG | - | chr1_2:43417897-43417916 | Msa0071480:three_prime_UTR | 25.0% |
| !! | TAGATTATGGATTATGTACT+AGG | - | chr1_2:43418653-43418672 | Msa0071480:CDS | 25.0% |
| ! | GAATGAAAAATAAACTGAAC+TGG | - | chr1_2:43418711-43418730 | Msa0071480:intron | 25.0% |
| !!! | ACTGATTTTGAAATTTGAGT+CGG | + | chr1_2:43419177-43419196 | None:intergenic | 25.0% |
| !!! | AAATCATGTTTTTAGGATCT+TGG | - | chr1_2:43420155-43420174 | Msa0071480:CDS | 25.0% |
| ! | TAACTGTATCTGTAATTATG+AGG | - | chr1_2:43420542-43420561 | Msa0071480:five_prime_UTR | 25.0% |
| ! | AACTGTATCTGTAATTATGA+GGG | - | chr1_2:43420543-43420562 | Msa0071480:five_prime_UTR | 25.0% |
| ! | TTATGAGGGTAAATATGATA+TGG | - | chr1_2:43420557-43420576 | Msa0071480:five_prime_UTR | 25.0% |
| ! | TAAAATGATGGAGTAGGATA+AGG | + | chr1_2:43417784-43417803 | None:intergenic | 30.0% |
| !!! | AGAAAGAGTTTTGAAGTCAA+TGG | + | chr1_2:43417812-43417831 | None:intergenic | 30.0% |
| !!! | GTTGTTCATTTTTTTGTGTG+TGG | + | chr1_2:43417889-43417908 | None:intergenic | 30.0% |
| TGAAAAATAAACTGAACTGG+TGG | - | chr1_2:43418714-43418733 | Msa0071480:intron | 30.0% | |
| TTGGTATAAAACTACAAGTG+AGG | - | chr1_2:43418749-43418768 | Msa0071480:intron | 30.0% | |
| TAACAAAACTGAATGTCAAC+CGG | + | chr1_2:43418891-43418910 | None:intergenic | 30.0% | |
| ! | TTGAATTGCTTTCTGAAGAA+AGG | + | chr1_2:43419679-43419698 | None:intergenic | 30.0% |
| !!! | ATGTTTTTAGGATCTTGGAA+GGG | - | chr1_2:43420160-43420179 | Msa0071480:CDS | 30.0% |
| ATTTCAATCCATGAAAAGGT+TGG | - | chr1_2:43420216-43420235 | Msa0071480:CDS | 30.0% | |
| ! | TTTTTCTGTAAGTATCATGC+TGG | - | chr1_2:43420337-43420356 | Msa0071480:CDS | 30.0% |
| !! | TTTTGATCAGTTGCTTTGTT+TGG | - | chr1_2:43420366-43420385 | Msa0071480:CDS | 30.0% |
| !! | CTTTGCTTTTACAATTTGTG+AGG | - | chr1_2:43420439-43420458 | Msa0071480:CDS | 30.0% |
| GACTAACGAACAAACCAAAA+CGG | - | chr1_2:43418118-43418137 | Msa0071480:three_prime_UTR | 35.0% | |
| GAAGAAGTTGAAGGATTCTA+TGG | - | chr1_2:43418337-43418356 | Msa0071480:CDS | 35.0% | |
| TTTGCGTGAAGTTATTACGA+CGG | - | chr1_2:43418373-43418392 | Msa0071480:CDS | 35.0% | |
| !! | CGACGTTATTTTACTGTTAC+TGG | - | chr1_2:43418416-43418435 | Msa0071480:CDS | 35.0% |
| ! | AGATCAAGAGTCTTATCATC+AGG | + | chr1_2:43418449-43418468 | None:intergenic | 35.0% |
| CTTGATCTATTGATCTCTAC+TGG | - | chr1_2:43418461-43418480 | Msa0071480:CDS | 35.0% | |
| ! | ACATGATTTTCCTTAGTGTG+AGG | - | chr1_2:43418781-43418800 | Msa0071480:intron | 35.0% |
| TTACTAGTAACCTCACACTA+AGG | + | chr1_2:43418794-43418813 | None:intergenic | 35.0% | |
| TCAACACTTCTAATCTTCGA+AGG | - | chr1_2:43418830-43418849 | Msa0071480:intron | 35.0% | |
| TATTACCAGTGTCAACATGT+CGG | - | chr1_2:43418922-43418941 | Msa0071480:intron | 35.0% | |
| TGTCAACATGTCGGTATTTA+TGG | - | chr1_2:43418931-43418950 | Msa0071480:intron | 35.0% | |
| GTCAACATGTCGGTATTTAT+GGG | - | chr1_2:43418932-43418951 | Msa0071480:intron | 35.0% | |
| TTCCATGTAGTTAGATTCCT+TGG | - | chr1_2:43419112-43419131 | Msa0071480:intron | 35.0% | |
| ATCCAAGGAATCTAACTACA+TGG | + | chr1_2:43419117-43419136 | None:intergenic | 35.0% | |
| GATAGTTCAGTTCAGACTTT+GGG | + | chr1_2:43419230-43419249 | None:intergenic | 35.0% | |
| AGATAGTTCAGTTCAGACTT+TGG | + | chr1_2:43419231-43419250 | None:intergenic | 35.0% | |
| ! | AAACAAATTCTCTAGAAGCC+AGG | + | chr1_2:43419296-43419315 | None:intergenic | 35.0% |
| !! | AGATAACTTGTTTGTTGGGT+TGG | - | chr1_2:43419549-43419568 | Msa0071480:intron | 35.0% |
| CAGAAAGCAATTCAAGAACA+AGG | - | chr1_2:43419684-43419703 | Msa0071480:intron | 35.0% | |
| CCTCTCTTGAATTTCATTGA+TGG | + | chr1_2:43419730-43419749 | None:intergenic | 35.0% | |
| CCATCAATGAAATTCAAGAG+AGG | - | chr1_2:43419727-43419746 | Msa0071480:intron | 35.0% | |
| ACAGTTATGGTACAGTTTCA+AGG | - | chr1_2:43419813-43419832 | Msa0071480:intron | 35.0% | |
| ATTGATCATTGTCTTGATCG+TGG | - | chr1_2:43419971-43419990 | Msa0071480:CDS | 35.0% | |
| !!! | CATGTTTTTAGGATCTTGGA+AGG | - | chr1_2:43420159-43420178 | Msa0071480:CDS | 35.0% |
| ! | TTCATCATCCAACCTTTTCA+TGG | + | chr1_2:43420227-43420246 | None:intergenic | 35.0% |
| AAAAGGTTGGATGATGAATG+TGG | - | chr1_2:43420229-43420248 | Msa0071480:CDS | 35.0% | |
| AAAGGTTGGATGATGAATGT+GGG | - | chr1_2:43420230-43420249 | Msa0071480:CDS | 35.0% | |
| GTCTGTAATCTAGAAAGGAA+TGG | - | chr1_2:43420253-43420272 | Msa0071480:CDS | 35.0% | |
| GTAATCTAGAAAGGAATGGT+TGG | - | chr1_2:43420257-43420276 | Msa0071480:CDS | 35.0% | |
| !!! | TTTGTTTTGAGGAGGACTTT+TGG | - | chr1_2:43420288-43420307 | Msa0071480:CDS | 35.0% |
| !! | TGATATGGTGCCATATATGA+AGG | - | chr1_2:43420572-43420591 | Msa0071480:five_prime_UTR | 35.0% |
| !! | GATATGGTGCCATATATGAA+GGG | - | chr1_2:43420573-43420592 | Msa0071480:five_prime_UTR | 35.0% |
| TGAAGATGACCCTTCATATA+TGG | + | chr1_2:43420585-43420604 | None:intergenic | 35.0% | |
| ! | TAGTCTTTGAAAGTCGTTGG+TGG | + | chr1_2:43418103-43418122 | None:intergenic | 40.0% |
| !! | CGTTAGTCTTTGAAAGTCGT+TGG | + | chr1_2:43418106-43418125 | None:intergenic | 40.0% |
| ! | TTTAGCATCGTGAACCGTTT+TGG | + | chr1_2:43418135-43418154 | None:intergenic | 40.0% |
| AAAACGGTTCACGATGCTAA+AGG | - | chr1_2:43418134-43418153 | Msa0071480:three_prime_UTR | 40.0% | |
| TATGGACGAAGAAGTTTCTG+TGG | - | chr1_2:43418178-43418197 | Msa0071480:three_prime_UTR | 40.0% | |
| ! | AGTTTCTGTGGCGTTGAAAA+AGG | - | chr1_2:43418190-43418209 | Msa0071480:three_prime_UTR | 40.0% |
| ! | TGGGTTGAAGAAGAAGTTGA+AGG | - | chr1_2:43418328-43418347 | Msa0071480:CDS | 40.0% |
| AAACTGAACTGGTGGAGAAT+TGG | - | chr1_2:43418722-43418741 | Msa0071480:intron | 40.0% | |
| ! | CTGGTGGAGAATTGGTTTAT+TGG | - | chr1_2:43418730-43418749 | Msa0071480:intron | 40.0% |
| AAATACCGACATGTTGACAC+TGG | + | chr1_2:43418930-43418949 | None:intergenic | 40.0% | |
| ATGTAACTGACCTCACTTAG+TGG | - | chr1_2:43418967-43418986 | Msa0071480:intron | 40.0% | |
| TGTAACTGACCTCACTTAGT+GGG | - | chr1_2:43418968-43418987 | Msa0071480:intron | 40.0% | |
| TCACTTAGTGGGATAAGACT+GGG | - | chr1_2:43418979-43418998 | Msa0071480:intron | 40.0% | |
| ACTACATGGAAACCAAATCC+AGG | + | chr1_2:43419103-43419122 | None:intergenic | 40.0% | |
| CTTTAGACTGAGTGAATCCA+AGG | + | chr1_2:43419132-43419151 | None:intergenic | 40.0% | |
| ATGAGGATTTCCTGCATTCA+CGG | + | chr1_2:43419411-43419430 | None:intergenic | 40.0% | |
| ATGCAGGAAATCCTCATTGA+TGG | - | chr1_2:43419414-43419433 | Msa0071480:intron | 40.0% | |
| AAGATTCTCCACCATCAATG+AGG | + | chr1_2:43419428-43419447 | None:intergenic | 40.0% | |
| ATCTACATGTATCATGCCAC+CGG | + | chr1_2:43419476-43419495 | None:intergenic | 40.0% | |
| TGTGAGTTTCACTTTGATGC+AGG | - | chr1_2:43419642-43419661 | Msa0071480:intron | 40.0% | |
| AAGCAATTCAAGAACAAGGC+AGG | - | chr1_2:43419688-43419707 | Msa0071480:intron | 40.0% | |
| AGCAATTCAAGAACAAGGCA+GGG | - | chr1_2:43419689-43419708 | Msa0071480:intron | 40.0% | |
| ACAGTTTCAAGGTGAGCAAT+TGG | - | chr1_2:43419824-43419843 | Msa0071480:intron | 40.0% | |
| CCTTGCAGTTTGTAACTGTT+CGG | + | chr1_2:43419901-43419920 | None:intergenic | 40.0% | |
| ACCAGAGAAACACAAGGAAA+TGG | - | chr1_2:43419925-43419944 | Msa0071480:CDS | 40.0% | |
| TCCATTTCCTTGTGTTTCTC+TGG | + | chr1_2:43419929-43419948 | None:intergenic | 40.0% | |
| CCACTATCATTATGTTGCCA+TGG | + | chr1_2:43420014-43420033 | None:intergenic | 40.0% | |
| CCATGGCAACATAATGATAG+TGG | - | chr1_2:43420011-43420030 | Msa0071480:CDS | 40.0% | |
| !! | TGGCAACATAATGATAGTGG+AGG | - | chr1_2:43420014-43420033 | Msa0071480:CDS | 40.0% |
| !! | CAACATAATGATAGTGGAGG+CGG | - | chr1_2:43420017-43420036 | Msa0071480:CDS | 40.0% |
| TAAGATTAAGTACCACCCGA+AGG | + | chr1_2:43420092-43420111 | None:intergenic | 40.0% | |
| TTCGGGTGGTACTTAATCTT+AGG | - | chr1_2:43420091-43420110 | Msa0071480:CDS | 40.0% | |
| TCGGGTGGTACTTAATCTTA+GGG | - | chr1_2:43420092-43420111 | Msa0071480:CDS | 40.0% | |
| AAGGTTGGATGATGAATGTG+GGG | - | chr1_2:43420231-43420250 | Msa0071480:CDS | 40.0% | |
| TCTAGAAAGGAATGGTTGGT+TGG | - | chr1_2:43420261-43420280 | Msa0071480:CDS | 40.0% | |
| ! | CTAGAAAGGAATGGTTGGTT+GGG | - | chr1_2:43420262-43420281 | Msa0071480:CDS | 40.0% |
| !!! | TGGTTGGGTCTTTTGTTTTG+AGG | - | chr1_2:43420277-43420296 | Msa0071480:CDS | 40.0% |
| !!! | TTGGGTCTTTTGTTTTGAGG+AGG | - | chr1_2:43420280-43420299 | Msa0071480:CDS | 40.0% |
| TGTGAGGCTCAATTAAACCA+AGG | - | chr1_2:43420455-43420474 | Msa0071480:CDS | 40.0% | |
| CCGGTGAAACTTCTTCACTA+CGG | + | chr1_2:43417938-43417957 | None:intergenic | 45.0% | |
| CCGTAGTGAAGAAGTTTCAC+CGG | - | chr1_2:43417935-43417954 | Msa0071480:three_prime_UTR | 45.0% | |
| AAATTCTTCGACGACGTCGA+AGG | - | chr1_2:43418044-43418063 | Msa0071480:three_prime_UTR | 45.0% | |
| TCACGATGCTAAAGGAGTGA+AGG | - | chr1_2:43418142-43418161 | Msa0071480:three_prime_UTR | 45.0% | |
| ! | GGCGTTGGAAAGATCTAATG+CGG | - | chr1_2:43418238-43418257 | Msa0071480:three_prime_UTR | 45.0% |
| AAAGATCTAATGCGGCGAAC+CGG | - | chr1_2:43418246-43418265 | Msa0071480:three_prime_UTR | 45.0% | |
| ! | TGTCTGATTCGTGTCAGTGT+CGG | - | chr1_2:43418862-43418881 | Msa0071480:intron | 45.0% |
| ! | CAGTCTTATCCCACTAAGTG+AGG | + | chr1_2:43418980-43418999 | None:intergenic | 45.0% |
| CTCACTTAGTGGGATAAGAC+TGG | - | chr1_2:43418978-43418997 | Msa0071480:intron | 45.0% | |
| TCTTGAAGAGATGTGCTACC+TGG | - | chr1_2:43419082-43419101 | Msa0071480:intron | 45.0% | |
| AGAGATGTGCTACCTGGATT+TGG | - | chr1_2:43419088-43419107 | Msa0071480:intron | 45.0% | |
| ! | TCTACCGATTGTGTGAATGC+AGG | - | chr1_2:43419266-43419285 | Msa0071480:intron | 45.0% |
| ! | CTACCGATTGTGTGAATGCA+GGG | - | chr1_2:43419267-43419286 | Msa0071480:intron | 45.0% |
| ! | TACCGATTGTGTGAATGCAG+GGG | - | chr1_2:43419268-43419287 | Msa0071480:intron | 45.0% |
| ATCCCCTGCATTCACACAAT+CGG | + | chr1_2:43419273-43419292 | None:intergenic | 45.0% | |
| ATTTCCTGCATTCACGGAGT+CGG | + | chr1_2:43419405-43419424 | None:intergenic | 45.0% | |
| CAGGAAATCCTCATTGATGG+TGG | - | chr1_2:43419417-43419436 | Msa0071480:intron | 45.0% | |
| GCAATTCAAGAACAAGGCAG+GGG | - | chr1_2:43419690-43419709 | Msa0071480:intron | 45.0% | |
| AGACTTGGAGAAGAGTCTAC+TGG | - | chr1_2:43419764-43419783 | Msa0071480:intron | 45.0% | |
| GTTCCTCGACATGACAGTTA+TGG | - | chr1_2:43419800-43419819 | Msa0071480:intron | 45.0% | |
| GTACCATAACTGTCATGTCG+AGG | + | chr1_2:43419806-43419825 | None:intergenic | 45.0% | |
| CCGAACAGTTACAAACTGCA+AGG | - | chr1_2:43419898-43419917 | Msa0071480:intron | 45.0% | |
| !! | ATAATGATAGTGGAGGCGGT+GGG | - | chr1_2:43420021-43420040 | Msa0071480:CDS | 45.0% |
| ! | TTGGAAGGGTGTGACTAACA+TGG | - | chr1_2:43420174-43420193 | Msa0071480:CDS | 45.0% |
| GTGGGGTCTGTAATCTAGAA+AGG | - | chr1_2:43420248-43420267 | Msa0071480:CDS | 45.0% | |
| GTGAAGAAGTTTCACCGGAC+CGG | - | chr1_2:43417940-43417959 | Msa0071480:three_prime_UTR | 50.0% | |
| CACGTCATCGAGATGACAGA+CGG | - | chr1_2:43417966-43417985 | Msa0071480:three_prime_UTR | 50.0% | |
| CGTCGTCGAAGAATTTGTCG+AGG | + | chr1_2:43418040-43418059 | None:intergenic | 50.0% | |
| GAAGGAGCTTCGTTCACGTA+TGG | - | chr1_2:43418160-43418179 | Msa0071480:three_prime_UTR | 50.0% | |
| ! | GGCGTTGAAAAAGGCGAAGA+TGG | - | chr1_2:43418199-43418218 | Msa0071480:three_prime_UTR | 50.0% |
| GAAGATGGTGAAGCTGAAGC+TGG | - | chr1_2:43418214-43418233 | Msa0071480:three_prime_UTR | 50.0% | |
| TAATGCGGCGAACCGGAATT+TGG | - | chr1_2:43418253-43418272 | Msa0071480:three_prime_UTR | 50.0% | |
| AACCGGAATTTGGAAGGGTG+TGG | - | chr1_2:43418263-43418282 | Msa0071480:three_prime_UTR | 50.0% | |
| GTCCACACCCTTCCAAATTC+CGG | + | chr1_2:43418268-43418287 | None:intergenic | 50.0% | |
| ! | GAATTTGGAAGGGTGTGGAC+CGG | - | chr1_2:43418268-43418287 | Msa0071480:exon | 50.0% |
| ! | AATTTGGAAGGGTGTGGACC+GGG | - | chr1_2:43418269-43418288 | Msa0071480:exon | 50.0% |
| ! | TTCGTGTCAGTGTCGGATAC+CGG | - | chr1_2:43418869-43418888 | Msa0071480:intron | 50.0% |
| CACATGTATCATGCCGTGAG+AGG | + | chr1_2:43419348-43419367 | None:intergenic | 50.0% | |
| TCCTACCCTTGATAAGCCTC+CGG | - | chr1_2:43419454-43419473 | Msa0071480:intron | 50.0% | |
| TACATGTATCATGCCACCGG+AGG | + | chr1_2:43419473-43419492 | None:intergenic | 50.0% | |
| ACAAGGCAGGGGAAGAATTC+TGG | - | chr1_2:43419701-43419720 | Msa0071480:intron | 50.0% | |
| GCATGACGCTGTCAAAGACT+TGG | - | chr1_2:43419749-43419768 | Msa0071480:intron | 50.0% | |
| CTGTCATGTCGAGGAACACT+TGG | + | chr1_2:43419797-43419816 | None:intergenic | 50.0% | |
| GGATGATATCGAGAGCCATG+TGG | - | chr1_2:43419845-43419864 | Msa0071480:intron | 50.0% | |
| !! | GGAAGCACCAGAGAAACACA+AGG | - | chr1_2:43419919-43419938 | Msa0071480:CDS | 50.0% |
| CTTGATCGTGGTTCTTGCCA+CGG | - | chr1_2:43419983-43420002 | Msa0071480:CDS | 50.0% | |
| TTCTTGCCACGGTGAAACCA+TGG | - | chr1_2:43419994-43420013 | Msa0071480:CDS | 50.0% | |
| ATGTTGCCATGGTTTCACCG+TGG | + | chr1_2:43420003-43420022 | None:intergenic | 50.0% | |
| !! | CATAATGATAGTGGAGGCGG+TGG | - | chr1_2:43420020-43420039 | Msa0071480:CDS | 50.0% |
| !! | TAATGATAGTGGAGGCGGTG+GGG | - | chr1_2:43420022-43420041 | Msa0071480:CDS | 50.0% |
| GATTAAGTACCACCCGAAGG+AGG | + | chr1_2:43420089-43420108 | None:intergenic | 50.0% | |
| TCATCTCGATGACGTGGTGC+CGG | + | chr1_2:43417962-43417981 | None:intergenic | 55.0% | |
| CGTCTGTCATCTCGATGACG+TGG | + | chr1_2:43417968-43417987 | None:intergenic | 55.0% | |
| ATCGAGATGACAGACGGTGC+CGG | - | chr1_2:43417972-43417991 | Msa0071480:three_prime_UTR | 55.0% | |
| GATGGTGAAGCTGAAGCTGG+AGG | - | chr1_2:43418217-43418236 | Msa0071480:three_prime_UTR | 55.0% | |
| CGGCGAACCGGAATTTGGAA+GGG | - | chr1_2:43418258-43418277 | Msa0071480:three_prime_UTR | 55.0% | |
| ! | ACTCGGAGTTCGGTGGTGAA+TGG | - | chr1_2:43418308-43418327 | Msa0071480:CDS | 55.0% |
| ! | CTCGGAGTTCGGTGGTGAAT+GGG | - | chr1_2:43418309-43418328 | Msa0071480:CDS | 55.0% |
| TGTGTGAATGCAGGGGATCC+TGG | - | chr1_2:43419275-43419294 | Msa0071480:intron | 55.0% | |
| GTTCGAGGCTAATGGAGGGT+AGG | + | chr1_2:43419323-43419342 | None:intergenic | 55.0% | |
| GGCTGTTCGAGGCTAATGGA+GGG | + | chr1_2:43419327-43419346 | None:intergenic | 55.0% | |
| AGGCTGTTCGAGGCTAATGG+AGG | + | chr1_2:43419328-43419347 | None:intergenic | 55.0% | |
| GAGAGGCTGTTCGAGGCTAA+TGG | + | chr1_2:43419331-43419350 | None:intergenic | 55.0% | |
| TAGCCTCGAACAGCCTCTCA+CGG | - | chr1_2:43419332-43419351 | Msa0071480:intron | 55.0% | |
| !! | ACTACCGACTCCGTGAATGC+AGG | - | chr1_2:43419398-43419417 | Msa0071480:intron | 55.0% |
| ACCGGAGGCTTATCAAGGGT+AGG | + | chr1_2:43419458-43419477 | None:intergenic | 55.0% | |
| TACCCTTGATAAGCCTCCGG+TGG | - | chr1_2:43419457-43419476 | Msa0071480:intron | 55.0% | |
| TGCCACCGGAGGCTTATCAA+GGG | + | chr1_2:43419462-43419481 | None:intergenic | 55.0% | |
| ATGCCACCGGAGGCTTATCA+AGG | + | chr1_2:43419463-43419482 | None:intergenic | 55.0% | |
| ATATCGAGAGCCATGTGGCG+AGG | - | chr1_2:43419850-43419869 | Msa0071480:intron | 55.0% | |
| TATCGAGAGCCATGTGGCGA+GGG | - | chr1_2:43419851-43419870 | Msa0071480:intron | 55.0% | |
| !! | AATGATAGTGGAGGCGGTGG+GGG | - | chr1_2:43420023-43420042 | Msa0071480:CDS | 55.0% |
| TAAGTACCACCCGAAGGAGG+AGG | + | chr1_2:43420086-43420105 | None:intergenic | 55.0% | |
| GCTGCTGCATTTCTCTGCCT+TGG | + | chr1_2:43420475-43420494 | None:intergenic | 55.0% | |
| TCTACCTCCTGCTCCTGCTC+CGG | + | chr1_2:43418012-43418031 | None:intergenic | 60.0% | |
| ! | GAAGCTGAAGCTGGAGGCGT+TGG | - | chr1_2:43418223-43418242 | Msa0071480:three_prime_UTR | 60.0% |
| GCGGCGAACCGGAATTTGGA+AGG | - | chr1_2:43418257-43418276 | Msa0071480:three_prime_UTR | 60.0% | |
| TCACCACCGAACTCCGAGTC+CGG | + | chr1_2:43418307-43418326 | None:intergenic | 60.0% | |
| ATGCCGTGAGAGGCTGTTCG+AGG | + | chr1_2:43419338-43419357 | None:intergenic | 60.0% | |
| GCGAGCTCGTTTGTGCACAC+TGG | - | chr1_2:43419873-43419892 | Msa0071480:intron | 60.0% | |
| !! | TCGATGACGTGGTGCCGGTC+CGG | + | chr1_2:43417957-43417976 | None:intergenic | 65.0% |
| !! | ATGACAGACGGTGCCGGTGC+CGG | - | chr1_2:43417978-43417997 | Msa0071480:three_prime_UTR | 65.0% |
| !! | TCCTGCTCCGGTTCTGGCTC+CGG | + | chr1_2:43418000-43418019 | None:intergenic | 65.0% |
| TCCTGCTCCTGCTCCGGTTC+TGG | + | chr1_2:43418006-43418025 | None:intergenic | 65.0% | |
| AGAACCGGAGCAGGAGCAGG+AGG | - | chr1_2:43418005-43418024 | Msa0071480:three_prime_UTR | 65.0% | |
| GTGTGGACCGGGTTCGTCGT+CGG | - | chr1_2:43418280-43418299 | Msa0071480:exon | 65.0% | |
| GTTCGTCGTCGGACCGGACT+CGG | - | chr1_2:43418291-43418310 | Msa0071480:CDS | 65.0% | |
| GTCGGACCGGACTCGGAGTT+CGG | - | chr1_2:43418298-43418317 | Msa0071480:CDS | 65.0% | |
| ! | GAAGGAGGAGGAGGTGACGG+GGG | + | chr1_2:43420074-43420093 | None:intergenic | 65.0% |
| CGAAGGAGGAGGAGGTGACG+GGG | + | chr1_2:43420075-43420094 | None:intergenic | 65.0% | |
| CCGAAGGAGGAGGAGGTGAC+GGG | + | chr1_2:43420076-43420095 | None:intergenic | 65.0% | |
| CCCGTCACCTCCTCCTCCTT+CGG | - | chr1_2:43420073-43420092 | Msa0071480:CDS | 65.0% | |
| CCCGAAGGAGGAGGAGGTGA+CGG | + | chr1_2:43420077-43420096 | None:intergenic | 65.0% | |
| CCGTCACCTCCTCCTCCTTC+GGG | - | chr1_2:43420074-43420093 | Msa0071480:CDS | 65.0% | |
| TCACCTCCTCCTCCTTCGGG+TGG | - | chr1_2:43420077-43420096 | Msa0071480:CDS | 65.0% | |
| GTACCACCCGAAGGAGGAGG+AGG | + | chr1_2:43420083-43420102 | None:intergenic | 65.0% | |
| !! | TCCGGTTCTGGCTCCGGCAC+CGG | + | chr1_2:43417994-43418013 | None:intergenic | 70.0% |
| GCCAGAACCGGAGCAGGAGC+AGG | - | chr1_2:43418002-43418021 | Msa0071480:three_prime_UTR | 70.0% | |
| GACCGGGTTCGTCGTCGGAC+CGG | - | chr1_2:43418285-43418304 | Msa0071480:CDS | 70.0% | |
| GTCCGGTCCGACGACGAACC+CGG | + | chr1_2:43418290-43418309 | None:intergenic | 70.0% | |
| GGACCGGACTCGGAGTTCGG+TGG | - | chr1_2:43418301-43418320 | Msa0071480:CDS | 70.0% | |
| ACGAGCTCGCCCTCGCCACA+TGG | + | chr1_2:43419863-43419882 | None:intergenic | 70.0% | |
| GGGGGAGTCTGTGCTGGAGC+AGG | + | chr1_2:43420056-43420075 | None:intergenic | 70.0% | |
| !! | GGTGACGGGGGAGTCTGTGC+TGG | + | chr1_2:43420062-43420081 | None:intergenic | 70.0% |
| ! | GCCGGTGCCGGAGCCAGAAC+CGG | - | chr1_2:43417990-43418009 | Msa0071480:three_prime_UTR | 75.0% |
| GCCGGAGCCAGAACCGGAGC+AGG | - | chr1_2:43417996-43418015 | Msa0071480:three_prime_UTR | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 43417781 | 43420610 | 43417781 | ID=Msa0071480;Name=Msa0071480 |
| chr1_2 | mRNA | 43417781 | 43420610 | 43417781 | ID=Msa0071480-mRNA-1;Parent=Msa0071480;Name=Msa0071480-mRNA-1;_AED=0.25;_eAED=0.25;_QI=119|1|1|1|1|1|2|504|341 |
| chr1_2 | exon | 43417781 | 43418727 | 43417781 | ID=Msa0071480-mRNA-1:exon:13118;Parent=Msa0071480-mRNA-1 |
| chr1_2 | exon | 43419909 | 43420610 | 43419909 | ID=Msa0071480-mRNA-1:exon:13117;Parent=Msa0071480-mRNA-1 |
| chr1_2 | five_prime_UTR | 43420492 | 43420610 | 43420492 | ID=Msa0071480-mRNA-1:five_prime_utr;Parent=Msa0071480-mRNA-1 |
| chr1_2 | CDS | 43419909 | 43420491 | 43419909 | ID=Msa0071480-mRNA-1:cds;Parent=Msa0071480-mRNA-1 |
| chr1_2 | CDS | 43418285 | 43418727 | 43418285 | ID=Msa0071480-mRNA-1:cds;Parent=Msa0071480-mRNA-1 |
| chr1_2 | three_prime_UTR | 43417781 | 43418284 | 43417781 | ID=Msa0071480-mRNA-1:three_prime_utr;Parent=Msa0071480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
