Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577990 | XP_013446565.1 | 78.370 | 319 | 15 | 3 | 1 | 265 | 53 | 371 | 2.02e-171 | 490 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577990 | sp|Q6DBG8|ARAD1_ARATH | 34.251 | 327 | 145 | 7 | 1 | 265 | 64 | 382 | 2.70e-44 | 158 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577990 | A0A072TT39 | 78.370 | 319 | 15 | 3 | 1 | 265 | 53 | 371 | 9.63e-172 | 490 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0183460 | Msa0577990 | -0.815103 | 1.097395e-51 | -8.615850e-47 |
| Msa0553220 | Msa0577990 | 0.811867 | 5.646552e-51 | -8.615850e-47 |
| Msa0577990 | Msa0614990 | -0.807265 | 5.500203e-50 | -8.615850e-47 |
| Msa0577990 | Msa0705600 | -0.812785 | 3.559277e-51 | -8.615850e-47 |
| Msa0577990 | Msa0806920 | -0.802035 | 6.791388e-49 | -8.615850e-47 |
| Msa0577990 | Msa1308080 | 0.820498 | 6.643524e-53 | -8.615850e-47 |
| Msa0577990 | Msa1365700 | 0.816513 | 5.318891e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577990 | MtrunA17_Chr8g0377331 | 78.370 | 319 | 15 | 3 | 1 | 265 | 53 | 371 | 1.86e-175 | 490 |
| Msa0577990 | MtrunA17_Chr3g0122631 | 62.500 | 320 | 65 | 4 | 1 | 265 | 54 | 373 | 2.28e-130 | 375 |
| Msa0577990 | MtrunA17_Chr3g0092341 | 36.280 | 328 | 143 | 9 | 1 | 265 | 119 | 443 | 1.20e-56 | 189 |
| Msa0577990 | MtrunA17_Chr7g0254391 | 34.954 | 329 | 145 | 9 | 1 | 265 | 120 | 443 | 3.07e-56 | 187 |
| Msa0577990 | MtrunA17_Chr6g0460631 | 33.129 | 326 | 153 | 7 | 1 | 265 | 117 | 438 | 5.22e-54 | 182 |
| Msa0577990 | MtrunA17_Chr4g0043801 | 34.524 | 336 | 138 | 8 | 1 | 265 | 96 | 420 | 4.17e-47 | 163 |
| Msa0577990 | MtrunA17_Chr1g0200871 | 30.503 | 318 | 131 | 8 | 26 | 258 | 101 | 413 | 1.61e-35 | 132 |
| Msa0577990 | MtrunA17_Chr4g0039811 | 30.530 | 321 | 158 | 7 | 1 | 262 | 116 | 430 | 3.83e-31 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577990 | AT1G67410.1 | 50.155 | 323 | 103 | 5 | 1 | 265 | 57 | 379 | 2.32e-107 | 317 |
| Msa0577990 | AT1G67410.2 | 47.059 | 238 | 77 | 4 | 1 | 189 | 57 | 294 | 2.95e-65 | 206 |
| Msa0577990 | AT1G74680.1 | 36.280 | 328 | 141 | 8 | 1 | 263 | 79 | 403 | 5.37e-58 | 191 |
| Msa0577990 | AT3G45400.1 | 34.043 | 329 | 149 | 7 | 1 | 265 | 85 | 409 | 9.37e-53 | 178 |
| Msa0577990 | AT3G03650.1 | 32.822 | 326 | 152 | 7 | 1 | 263 | 125 | 446 | 4.67e-48 | 166 |
| Msa0577990 | AT2G35100.1 | 34.251 | 327 | 145 | 7 | 1 | 265 | 64 | 382 | 2.74e-45 | 158 |
| Msa0577990 | AT5G44930.3 | 33.227 | 313 | 144 | 7 | 1 | 258 | 69 | 371 | 4.07e-41 | 145 |
| Msa0577990 | AT5G44930.2 | 33.227 | 313 | 144 | 7 | 1 | 258 | 69 | 371 | 1.12e-40 | 145 |
| Msa0577990 | AT5G44930.1 | 33.227 | 313 | 144 | 7 | 1 | 258 | 69 | 371 | 1.12e-40 | 145 |
| Msa0577990 | AT5G16890.1 | 31.310 | 313 | 150 | 7 | 1 | 254 | 122 | 428 | 3.83e-34 | 129 |
| Msa0577990 | AT1G34270.1 | 30.769 | 312 | 127 | 7 | 3 | 230 | 63 | 369 | 1.21e-32 | 124 |
Find 65 sgRNAs with CRISPR-Local
Find 395 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCAAGTTGTTGTGGATTT+TGG | 0.180394 | 4_1:-82386682 | Msa0577990:CDS |
| TTTAGACCTCTGCCAATATT+TGG | 0.188935 | 4_1:+82386777 | None:intergenic |
| TTCCACGGTGGCCGGGGAAT+TGG | 0.209610 | 4_1:-82389782 | Msa0577990:CDS |
| TCCACGGTGGCCGGGGAATT+GGG | 0.210132 | 4_1:-82389781 | Msa0577990:CDS |
| TCTTTCGAGGGAGGACTTTC+AGG | 0.233960 | 4_1:-82386537 | Msa0577990:CDS |
| ATTTCAGTCCACTTCTGTTT+TGG | 0.271836 | 4_1:+82385280 | None:intergenic |
| TCTTGAAGAAATCCAAATAT+TGG | 0.317518 | 4_1:-82386789 | Msa0577990:CDS |
| TGGTGAAGCTGTGAGGGTTT+TGG | 0.347300 | 4_1:-82389694 | Msa0577990:CDS |
| GACTCACAATGGCATCAAAA+AGG | 0.367535 | 4_1:+82385439 | None:intergenic |
| CGGGAGTCTCCGACGTGTTC+CGG | 0.368384 | 4_1:+82389820 | None:intergenic |
| GATCATTCCGACATTGAAAC+GGG | 0.374691 | 4_1:+82389848 | None:intergenic |
| TTCAAATTAGACATTCCCTT+AGG | 0.428467 | 4_1:+82386652 | None:intergenic |
| CCACGGTGGCCGGGGAATTG+GGG | 0.447331 | 4_1:-82389780 | Msa0577990:CDS |
| TGATCATTCCGACATTGAAA+CGG | 0.458697 | 4_1:+82389847 | None:intergenic |
| GGCATTACAGCCTGGCTACA+TGG | 0.464917 | 4_1:-82385323 | Msa0577990:CDS |
| ATTTGATCACTCACAATGAC+TGG | 0.475884 | 4_1:+82385408 | None:intergenic |
| AGCAGCATAGTGTGGAGTAT+TGG | 0.478161 | 4_1:-82389749 | Msa0577990:CDS |
| TTCAAAGAGGCATTACAGCC+TGG | 0.487772 | 4_1:-82385331 | Msa0577990:intron |
| TCAAATTAGACATTCCCTTA+GGG | 0.498198 | 4_1:+82386653 | None:intergenic |
| CTGGTGTTAGGTTGATCTGA+TGG | 0.498628 | 4_1:-82386815 | Msa0577990:intron |
| TAATCAATCTCATCCTCAAA+AGG | 0.501144 | 4_1:+82385379 | None:intergenic |
| TATCATTCAATTGATTTCGT+AGG | 0.502088 | 4_1:+82386707 | None:intergenic |
| TATGAGCGAAGTGTTGCAAC+AGG | 0.503613 | 4_1:-82386197 | Msa0577990:CDS |
| GATGATGGTGTGTCTCCTGC+TGG | 0.505695 | 4_1:+82385468 | None:intergenic |
| GAATCCACAACATGAACATA+CGG | 0.508623 | 4_1:+82386613 | None:intergenic |
| CATTGTCCGTGCTAAACTGA+TGG | 0.511811 | 4_1:-82386249 | Msa0577990:CDS |
| ATGATACAACAGTCATCTAA+AGG | 0.516200 | 4_1:-82385519 | Msa0577990:intron |
| CTCCCGCCCCGTTTCAATGT+CGG | 0.519373 | 4_1:-82389855 | Msa0577990:CDS |
| AGCTGGTCAACCATGTAGCC+AGG | 0.520294 | 4_1:+82385313 | None:intergenic |
| AAGTTCTGTTTGCATCCAGC+AGG | 0.523942 | 4_1:-82385483 | Msa0577990:CDS |
| TGATACTATTCAAGTTGTTG+TGG | 0.526811 | 4_1:-82386689 | Msa0577990:CDS |
| TAGACATTCCCTTAGGGTAG+CGG | 0.529225 | 4_1:+82386659 | None:intergenic |
| GGAAAATCACTAACGGTGAC+GGG | 0.532592 | 4_1:+82389801 | None:intergenic |
| TGGAAAATCACTAACGGTGA+CGG | 0.533130 | 4_1:+82389800 | None:intergenic |
| TAGTGTGGAGTATTGGATGA+TGG | 0.537780 | 4_1:-82389742 | Msa0577990:CDS |
| GTAAAGTTCCAAAACAGAAG+TGG | 0.546616 | 4_1:-82385288 | Msa0577990:CDS |
| GTGGACTGAAATGTGGAGGC+AGG | 0.549173 | 4_1:-82385269 | None:intergenic |
| CGAATCTCGTACGGATCTTG+AGG | 0.549607 | 4_1:+82386574 | None:intergenic |
| TTCCGACATTGAAACGGGGC+GGG | 0.550144 | 4_1:+82389853 | None:intergenic |
| TTCTTCAAACCCCAATTCCC+CGG | 0.550864 | 4_1:+82389771 | None:intergenic |
| AGTGTGGAGCGAATCTCGTA+CGG | 0.553714 | 4_1:+82386565 | None:intergenic |
| CCCCAATTCCCCGGCCACCG+TGG | 0.568857 | 4_1:+82389780 | None:intergenic |
| AATCCACAACATGAACATAC+GGG | 0.584521 | 4_1:+82386614 | None:intergenic |
| AGAAATCCAAATATTGGCAG+AGG | 0.585239 | 4_1:-82386783 | Msa0577990:intron |
| TGATGGTGGTGAAGCTGTGA+GGG | 0.585351 | 4_1:-82389700 | Msa0577990:CDS |
| ATTGTCCGTGCTAAACTGAT+GGG | 0.588872 | 4_1:-82386248 | Msa0577990:CDS |
| AACAGAAGTGGACTGAAATG+TGG | 0.594850 | 4_1:-82385276 | Msa0577990:CDS |
| GTCCCCGTATGTTCATGTTG+TGG | 0.595331 | 4_1:-82386617 | Msa0577990:CDS |
| AGTGTGGAGTATTGGATGAT+GGG | 0.598960 | 4_1:-82389741 | Msa0577990:CDS |
| TCGAGGGAGGACTTTCAGGA+AGG | 0.609417 | 4_1:-82386533 | Msa0577990:CDS |
| TTTGAAGAAGCAGCATAGTG+TGG | 0.628924 | 4_1:-82389757 | Msa0577990:CDS |
| GTCTAATTTGAATAAAGATG+TGG | 0.629262 | 4_1:-82386641 | Msa0577990:CDS |
| GTGATGGTGGTGAAGCTGTG+AGG | 0.639132 | 4_1:-82389701 | Msa0577990:CDS |
| ATGTCGGAATGATCACTCGC+CGG | 0.648453 | 4_1:-82389839 | Msa0577990:CDS |
| CCACCGTGGAAAATCACTAA+CGG | 0.670625 | 4_1:+82389794 | None:intergenic |
| AACAGGAGCAAACATAAAAG+CGG | 0.673543 | 4_1:-82386180 | Msa0577990:intron |
| AGAAGTGGACTGAAATGTGG+AGG | 0.674582 | 4_1:-82385273 | Msa0577990:CDS |
| ATATACCCATCAGTTTAGCA+CGG | 0.676515 | 4_1:+82386243 | None:intergenic |
| TGGAACACAGTGACTCACAA+TGG | 0.680701 | 4_1:+82385428 | None:intergenic |
| ATTCCGACATTGAAACGGGG+CGG | 0.686198 | 4_1:+82389852 | None:intergenic |
| CCCTCGAAAGAAAAGCAGTG+TGG | 0.694397 | 4_1:+82386549 | None:intergenic |
| AAACTGATGGGTATATTGAG+TGG | 0.712698 | 4_1:-82386236 | Msa0577990:CDS |
| ATCCACAACATGAACATACG+GGG | 0.720725 | 4_1:+82386615 | None:intergenic |
| ATCATTCCGACATTGAAACG+GGG | 0.730610 | 4_1:+82389849 | None:intergenic |
| GATCACTCGCCGGAACACGT+CGG | 0.757783 | 4_1:-82389829 | Msa0577990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATTTTATAAGCTAATT+AGG | - | chr4_1:82385822-82385841 | Msa0577990:intron | 10.0% |
| !!! | ATAATTTTATAAGCTAATTA+GGG | - | chr4_1:82385823-82385842 | Msa0577990:intron | 10.0% |
| !!! | TGATTTTCATTTTTAAATTA+CGG | - | chr4_1:82386477-82386496 | Msa0577990:intron | 10.0% |
| !! | AGAAAATTATGTTATATATA+GGG | + | chr4_1:82386846-82386865 | None:intergenic | 10.0% |
| !! | AAGAAAATTATGTTATATAT+AGG | + | chr4_1:82386847-82386866 | None:intergenic | 10.0% |
| !!! | TTTCCTTTTTATTTATTTTT+GGG | + | chr4_1:82387550-82387569 | None:intergenic | 10.0% |
| !!! | TTTTCCTTTTTATTTATTTT+TGG | + | chr4_1:82387551-82387570 | None:intergenic | 10.0% |
| !!! | ATGCATAAAAAAAATATTTT+TGG | - | chr4_1:82389345-82389364 | Msa0577990:intron | 10.0% |
| !!! | TAATTTTATAAGCTAATTAG+GGG | - | chr4_1:82385824-82385843 | Msa0577990:intron | 15.0% |
| !! | ACTTAATATTGATATACATT+GGG | + | chr4_1:82385862-82385881 | None:intergenic | 15.0% |
| !! | AACTTAATATTGATATACAT+TGG | + | chr4_1:82385863-82385882 | None:intergenic | 15.0% |
| !! | TAAAATAAAGTAAGTTTGAT+TGG | + | chr4_1:82386564-82386583 | None:intergenic | 15.0% |
| !!! | TATACTTTTTTGTTTGAAAA+AGG | + | chr4_1:82386789-82386808 | None:intergenic | 15.0% |
| !! | ATTCAATATCAATATACATA+GGG | + | chr4_1:82387388-82387407 | None:intergenic | 15.0% |
| !! | TAATAACTAATGAATGAAAA+TGG | - | chr4_1:82387465-82387484 | Msa0577990:intron | 15.0% |
| !! | ATTCCCAAAAATAAATAAAA+AGG | - | chr4_1:82387544-82387563 | Msa0577990:intron | 15.0% |
| !! | ATTTGTATCTTTATAATGAT+TGG | - | chr4_1:82387570-82387589 | Msa0577990:intron | 15.0% |
| !!! | TTTCTATTTTGATGTTATAT+TGG | - | chr4_1:82388288-82388307 | Msa0577990:intron | 15.0% |
| !!! | TTCTATTTTGATGTTATATT+GGG | - | chr4_1:82388289-82388308 | Msa0577990:intron | 15.0% |
| !! | CAATTCAAATTAAAAAAAGA+TGG | + | chr4_1:82388726-82388745 | None:intergenic | 15.0% |
| !!! | ATTATTTTCCTCTTTTTAAA+GGG | + | chr4_1:82389129-82389148 | None:intergenic | 15.0% |
| !!! | AATTATTTTCCTCTTTTTAA+AGG | + | chr4_1:82389130-82389149 | None:intergenic | 15.0% |
| !!! | TAAAAAGAGGAAAATAATTT+TGG | - | chr4_1:82389131-82389150 | Msa0577990:intron | 15.0% |
| !!! | TTTTGGATAATTTAGATAAT+AGG | - | chr4_1:82389148-82389167 | Msa0577990:intron | 15.0% |
| !! | TTTGGATAATTTAGATAATA+GGG | - | chr4_1:82389149-82389168 | Msa0577990:intron | 15.0% |
| !! | ATTTCTACTAAATATCGAAT+CGG | + | chr4_1:82385668-82385687 | None:intergenic | 20.0% |
| !!! | TATTTTATATGATCTGTGAT+TGG | - | chr4_1:82385753-82385772 | Msa0577990:intron | 20.0% |
| !! | CTTAATATTGATATACATTG+GGG | + | chr4_1:82385861-82385880 | None:intergenic | 20.0% |
| !! | AAAATATAACACTATCTAGA+AGG | + | chr4_1:82386303-82386322 | None:intergenic | 20.0% |
| !!! | TTATATTTTTGAATCTCAAG+TGG | - | chr4_1:82386314-82386333 | Msa0577990:intron | 20.0% |
| !! | AGAAAAACATGTTATATAGT+CGG | - | chr4_1:82386583-82386602 | Msa0577990:CDS | 20.0% |
| !!! | GAATTTTAGTTGTTACAAAA+AGG | + | chr4_1:82386732-82386751 | None:intergenic | 20.0% |
| !! | TTTGTAACAACTAAAATTCT+TGG | - | chr4_1:82386733-82386752 | Msa0577990:intron | 20.0% |
| !! | ATTTGATACTTAAGTCAATA+AGG | - | chr4_1:82387309-82387328 | Msa0577990:intron | 20.0% |
| !! | TTCAATATCAATATACATAG+GGG | + | chr4_1:82387387-82387406 | None:intergenic | 20.0% |
| !! | CATTCAATATCAATATACAT+AGG | + | chr4_1:82387389-82387408 | None:intergenic | 20.0% |
| !! | TATTTCTTTATATTGATCCA+TGG | + | chr4_1:82387674-82387693 | None:intergenic | 20.0% |
| !!! | GACTATTACTAAAATGTTTT+GGG | - | chr4_1:82387758-82387777 | Msa0577990:intron | 20.0% |
| !! | TAATTTCTAATGCATCATAA+AGG | + | chr4_1:82388128-82388147 | None:intergenic | 20.0% |
| !! | ACATTTCATTGAATTTAAGA+AGG | + | chr4_1:82388832-82388851 | None:intergenic | 20.0% |
| !! | TGGTAATTATTTCCTAAAAT+GGG | - | chr4_1:82389044-82389063 | Msa0577990:intron | 20.0% |
| ! | AAGAAAAAAGGGAACAAAAA+AGG | + | chr4_1:82385484-82385503 | None:intergenic | 25.0% |
| ! | TAAACTCAACGAAGAAAAAA+GGG | + | chr4_1:82385495-82385514 | None:intergenic | 25.0% |
| ! | TTAAACTCAACGAAGAAAAA+AGG | + | chr4_1:82385496-82385515 | None:intergenic | 25.0% |
| ! | TATAATGTGTCTTGAGATAT+TGG | - | chr4_1:82385586-82385605 | Msa0577990:intron | 25.0% |
| ! | TCACAGATCATATAAAATAG+TGG | + | chr4_1:82385752-82385771 | None:intergenic | 25.0% |
| ! | CGGAGATTATAAATTTAAGT+TGG | - | chr4_1:82386093-82386112 | Msa0577990:intron | 25.0% |
| ! | GATTGTATAATGAATAACTC+TGG | - | chr4_1:82386336-82386355 | Msa0577990:intron | 25.0% |
| ! | AACACTGTCTTAAAATTATG+TGG | - | chr4_1:82386399-82386418 | Msa0577990:intron | 25.0% |
| ! | TAAAATTATGTGGAACCTTA+AGG | - | chr4_1:82386409-82386428 | Msa0577990:intron | 25.0% |
| ! | AAAATTATGTGGAACCTTAA+GGG | - | chr4_1:82386410-82386429 | Msa0577990:intron | 25.0% |
| !! | TCAATTTAAAATGATGCTGA+AGG | - | chr4_1:82386762-82386781 | Msa0577990:intron | 25.0% |
| !! | CAATTTAAAATGATGCTGAA+GGG | - | chr4_1:82386763-82386782 | Msa0577990:intron | 25.0% |
| !! | ACAAAAAAGTATAATGCTGA+AGG | - | chr4_1:82386796-82386815 | Msa0577990:CDS | 25.0% |
| !! | CAAAAAAGTATAATGCTGAA+GGG | - | chr4_1:82386797-82386816 | Msa0577990:CDS | 25.0% |
| ! | TTATATATAGGGAAAAGAAG+TGG | + | chr4_1:82386835-82386854 | None:intergenic | 25.0% |
| ! | AATTCCTCATCAAACTTTAA+GGG | + | chr4_1:82386919-82386938 | None:intergenic | 25.0% |
| ! | AAATTCCTCATCAAACTTTA+AGG | + | chr4_1:82386920-82386939 | None:intergenic | 25.0% |
| ! | TAATTTCTACATAGGAACAT+TGG | + | chr4_1:82387195-82387214 | None:intergenic | 25.0% |
| ! | AATGTTCCTATGTAGAAATT+AGG | - | chr4_1:82387194-82387213 | Msa0577990:intron | 25.0% |
| ! | TTGATATTGAATGTCACAAT+AGG | - | chr4_1:82387396-82387415 | Msa0577990:intron | 25.0% |
| ! | TTCATTCATTAGTTATTACG+AGG | + | chr4_1:82387463-82387482 | None:intergenic | 25.0% |
| ! | AACTAATGAATGAAAATGGT+TGG | - | chr4_1:82387469-82387488 | Msa0577990:intron | 25.0% |
| ! | ATAATGATTGGATCTTTATG+AGG | - | chr4_1:82387582-82387601 | Msa0577990:intron | 25.0% |
| ! | TAGTTTCCTTACAAATTACT+AGG | - | chr4_1:82387734-82387753 | Msa0577990:intron | 25.0% |
| ! | AGTTTCCTTACAAATTACTA+GGG | - | chr4_1:82387735-82387754 | Msa0577990:intron | 25.0% |
| !! | GGACTATTACTAAAATGTTT+TGG | - | chr4_1:82387757-82387776 | Msa0577990:intron | 25.0% |
| ! | ATCATAAAGGATAGTTTGAT+GGG | + | chr4_1:82388115-82388134 | None:intergenic | 25.0% |
| ! | TTGTTAAAAAATCACAATGC+AGG | + | chr4_1:82388216-82388235 | None:intergenic | 25.0% |
| ! | CAAAAGAGTTATACAGTTAT+AGG | + | chr4_1:82388268-82388287 | None:intergenic | 25.0% |
| ! | TCTTGAAGAAATCCAAATAT+TGG | - | chr4_1:82388345-82388364 | Msa0577990:intron | 25.0% |
| !! | TATCATTCAATTGATTTCGT+AGG | + | chr4_1:82388430-82388449 | None:intergenic | 25.0% |
| ! | GTCTAATTTGAATAAAGATG+TGG | - | chr4_1:82388493-82388512 | Msa0577990:intron | 25.0% |
| ! | ACTGACTGTTAATAAAAGAA+TGG | - | chr4_1:82388635-82388654 | Msa0577990:intron | 25.0% |
| !!! | CAAAAGTTTGTCTTTAAAGT+TGG | - | chr4_1:82388685-82388704 | Msa0577990:intron | 25.0% |
| ! | TAGAGATAATATCACTTTAG+AGG | - | chr4_1:82388798-82388817 | Msa0577990:intron | 25.0% |
| !! | TTCAATGAAATGTGATTTTG+TGG | - | chr4_1:82388839-82388858 | Msa0577990:intron | 25.0% |
| !! | TCAATGAAATGTGATTTTGT+GGG | - | chr4_1:82388840-82388859 | Msa0577990:intron | 25.0% |
| ! | TAGGAAATAATTACCAGTAA+TGG | + | chr4_1:82389040-82389059 | None:intergenic | 25.0% |
| ! | CTGGTAATTATTTCCTAAAA+TGG | - | chr4_1:82389043-82389062 | Msa0577990:intron | 25.0% |
| !! | AAAATCAATCTTCCCATTTT+AGG | + | chr4_1:82389059-82389078 | None:intergenic | 25.0% |
| !!! | CTTTCCTTTTTATTTTTAGC+TGG | - | chr4_1:82389300-82389319 | Msa0577990:intron | 25.0% |
| ! | CTTACCAGCTAAAAATAAAA+AGG | + | chr4_1:82389307-82389326 | None:intergenic | 25.0% |
| ! | ATAAAAACTGCTCTATTTCA+AGG | - | chr4_1:82389428-82389447 | Msa0577990:intron | 25.0% |
| ! | TAAAAACTGCTCTATTTCAA+GGG | - | chr4_1:82389429-82389448 | Msa0577990:intron | 25.0% |
| ! | TAGTAACTGATATTACCAAA+AGG | + | chr4_1:82389474-82389493 | None:intergenic | 25.0% |
| TTCGTTGAGTTTAATACACA+TGG | - | chr4_1:82385502-82385521 | Msa0577990:CDS | 30.0% | |
| TTAGTGTGATGTAGAAATAG+CGG | - | chr4_1:82385616-82385635 | Msa0577990:intron | 30.0% | |
| ACTATAACACTTTAGCATAG+CGG | - | chr4_1:82385714-82385733 | Msa0577990:intron | 30.0% | |
| TGGAAACATTGTTTGAGTAT+TGG | - | chr4_1:82385773-82385792 | Msa0577990:intron | 30.0% | |
| !! | CATTGTTTGAGTATTGGTAA+TGG | - | chr4_1:82385779-82385798 | Msa0577990:intron | 30.0% |
| TACATATCTACAAAGATACC+AGG | + | chr4_1:82385946-82385965 | None:intergenic | 30.0% | |
| ! | AAGTTTTCCCGAGTAATATT+AGG | - | chr4_1:82385980-82385999 | Msa0577990:intron | 30.0% |
| ! | ATATAACTTTTCCTCTGTCT+GGG | + | chr4_1:82386018-82386037 | None:intergenic | 30.0% |
| !! | ATAACCGTTGTTTCTTTATG+AGG | - | chr4_1:82386042-82386061 | Msa0577990:intron | 30.0% |
| GTTTCCTCATAAAGAAACAA+CGG | + | chr4_1:82386049-82386068 | None:intergenic | 30.0% | |
| GATTCAAATAGAACCTCTTA+GGG | + | chr4_1:82386673-82386692 | None:intergenic | 30.0% | |
| TGATTCAAATAGAACCTCTT+AGG | + | chr4_1:82386674-82386693 | None:intergenic | 30.0% | |
| ATTCCTCATCAAACTTTAAG+GGG | + | chr4_1:82386918-82386937 | None:intergenic | 30.0% | |
| CTAATGATCAGCTAAATCAA+TGG | + | chr4_1:82386945-82386964 | None:intergenic | 30.0% | |
| !! | CATTGATTTAGCTGATCATT+AGG | - | chr4_1:82386943-82386962 | Msa0577990:intron | 30.0% |
| TGATCATTAGGCTAAAGAAA+TGG | - | chr4_1:82386955-82386974 | Msa0577990:intron | 30.0% | |
| CTTCATTGACAAAGATTCTT+CGG | - | chr4_1:82387039-82387058 | Msa0577990:intron | 30.0% | |
| TGATACTTAAGTCAATAAGG+AGG | - | chr4_1:82387312-82387331 | Msa0577990:intron | 30.0% | |
| TTTCGTTCGATATTATATGG+AGG | + | chr4_1:82387425-82387444 | None:intergenic | 30.0% | |
| GACTTTCGTTCGATATTATA+TGG | + | chr4_1:82387428-82387447 | None:intergenic | 30.0% | |
| AATAGCGTAATCTAGTGTAA+TGG | - | chr4_1:82387690-82387709 | Msa0577990:intron | 30.0% | |
| GTTTCCTTACAAATTACTAG+GGG | - | chr4_1:82387736-82387755 | Msa0577990:intron | 30.0% | |
| !! | AATGGGCTATTCATGATAAA+GGG | + | chr4_1:82387815-82387834 | None:intergenic | 30.0% |
| !! | TAATGGGCTATTCATGATAA+AGG | + | chr4_1:82387816-82387835 | None:intergenic | 30.0% |
| AAGTCTCTATCATAGCTAAT+GGG | + | chr4_1:82387832-82387851 | None:intergenic | 30.0% | |
| ATTAGCTATGATAGAGACTT+GGG | - | chr4_1:82387832-82387851 | Msa0577990:intron | 30.0% | |
| ATCAAGTAGTATCAGATGTT+TGG | - | chr4_1:82387994-82388013 | Msa0577990:intron | 30.0% | |
| TCATAAAGGATAGTTTGATG+GGG | + | chr4_1:82388114-82388133 | None:intergenic | 30.0% | |
| CATCATAAAGGATAGTTTGA+TGG | + | chr4_1:82388116-82388135 | None:intergenic | 30.0% | |
| !!! | TGTGATTTTTTAACAAGTGC+AGG | - | chr4_1:82388220-82388239 | Msa0577990:intron | 30.0% |
| !!! | GTGATTTTTTAACAAGTGCA+GGG | - | chr4_1:82388221-82388240 | Msa0577990:intron | 30.0% |
| !! | TGATACTATTCAAGTTGTTG+TGG | - | chr4_1:82388445-82388464 | Msa0577990:intron | 30.0% |
| !!! | ATTCAAGTTGTTGTGGATTT+TGG | - | chr4_1:82388452-82388471 | Msa0577990:intron | 30.0% |
| TCAAATTAGACATTCCCTTA+GGG | + | chr4_1:82388484-82388503 | None:intergenic | 30.0% | |
| TTCAAATTAGACATTCCCTT+AGG | + | chr4_1:82388485-82388504 | None:intergenic | 30.0% | |
| AGAATGGCACATTTCTTAAA+AGG | - | chr4_1:82388651-82388670 | Msa0577990:intron | 30.0% | |
| !! | TCTTTAAAGTTGGCAAGTAA+GGG | - | chr4_1:82388695-82388714 | Msa0577990:intron | 30.0% |
| ! | CAATGAAATGTGATTTTGTG+GGG | - | chr4_1:82388841-82388860 | Msa0577990:intron | 30.0% |
| ! | TTTGTCAACTGATAATGAAG+AGG | + | chr4_1:82389097-82389116 | None:intergenic | 30.0% |
| TCTTCATTATCAGTTGACAA+AGG | - | chr4_1:82389096-82389115 | Msa0577990:intron | 30.0% | |
| ATAAAAAGGAAAGAACCCTT+CGG | + | chr4_1:82389293-82389312 | None:intergenic | 30.0% | |
| TCACTTCTCACTAAATACAT+TGG | - | chr4_1:82389404-82389423 | Msa0577990:intron | 30.0% | |
| TATTACCAAAAGGAAGTTTC+AGG | + | chr4_1:82389464-82389483 | None:intergenic | 30.0% | |
| ATATTTCTTGATGAAGAGAG+AGG | - | chr4_1:82389493-82389512 | Msa0577990:intron | 30.0% | |
| ATCTTAGCAGATAAGAAAAG+GGG | + | chr4_1:82389564-82389583 | None:intergenic | 30.0% | |
| GATCTTAGCAGATAAGAAAA+GGG | + | chr4_1:82389565-82389584 | None:intergenic | 30.0% | |
| TGATCTTAGCAGATAAGAAA+AGG | + | chr4_1:82389566-82389585 | None:intergenic | 30.0% | |
| ATGATACAACAGTCATCTAA+AGG | - | chr4_1:82389615-82389634 | Msa0577990:intron | 30.0% | |
| ! | ATCAAATTGAACTCCTTTTG+AGG | - | chr4_1:82389742-82389761 | Msa0577990:CDS | 30.0% |
| TAATCAATCTCATCCTCAAA+AGG | + | chr4_1:82389758-82389777 | None:intergenic | 30.0% | |
| TTTGTTCTTCTCTTTCAAAG+AGG | - | chr4_1:82389790-82389809 | Msa0577990:CDS | 30.0% | |
| TGATCATTCCGACATTGAAA+CGG | + | chr4_1:82385290-82385309 | None:intergenic | 35.0% | |
| TACACATGGACATACTATGA+CGG | - | chr4_1:82385516-82385535 | Msa0577990:intron | 35.0% | |
| TTGTCAGATAGCTGCTATAA+GGG | - | chr4_1:82385690-82385709 | Msa0577990:intron | 35.0% | |
| !! | TGTTTGAGTATTGGTAATGG+TGG | - | chr4_1:82385782-82385801 | Msa0577990:intron | 35.0% |
| !! | GTTTGAGTATTGGTAATGGT+GGG | - | chr4_1:82385783-82385802 | Msa0577990:intron | 35.0% |
| AAGTTTCATACCTGCAAACA+AGG | - | chr4_1:82385878-82385897 | Msa0577990:intron | 35.0% | |
| CAACTCTCCTAATATTACTC+GGG | + | chr4_1:82385990-82386009 | None:intergenic | 35.0% | |
| CCAACTCTCCTAATATTACT+CGG | + | chr4_1:82385991-82386010 | None:intergenic | 35.0% | |
| ! | GATATAACTTTTCCTCTGTC+TGG | + | chr4_1:82386019-82386038 | None:intergenic | 35.0% |
| CGAGTGTTAATGTATGAGAA+TGG | - | chr4_1:82386070-82386089 | Msa0577990:intron | 35.0% | |
| GTGTTAATGTATGAGAATGG+CGG | - | chr4_1:82386073-82386092 | Msa0577990:intron | 35.0% | |
| AGCTATGATCTCTACTGATA+TGG | - | chr4_1:82386119-82386138 | Msa0577990:intron | 35.0% | |
| !! | ATGGTGTAACACTGACTTTA+AGG | + | chr4_1:82386181-82386200 | None:intergenic | 35.0% |
| AGTGACACTTAACATCTCTA+TGG | + | chr4_1:82386200-82386219 | None:intergenic | 35.0% | |
| TATCTAGAAGGCTGGAAAAA+GGG | + | chr4_1:82386291-82386310 | None:intergenic | 35.0% | |
| TATAACACTATCTAGAAGGC+TGG | + | chr4_1:82386299-82386318 | None:intergenic | 35.0% | |
| AAGGCAAAAGACAAATAGTG+AGG | + | chr4_1:82386713-82386732 | None:intergenic | 35.0% | |
| AATCCCCTTAAAGTTTGATG+AGG | - | chr4_1:82386912-82386931 | Msa0577990:intron | 35.0% | |
| AAAGAAATGGTGAGTGAACT+AGG | - | chr4_1:82386968-82386987 | Msa0577990:intron | 35.0% | |
| AAGAAATGGTGAGTGAACTA+GGG | - | chr4_1:82386969-82386988 | Msa0577990:intron | 35.0% | |
| GTAGACTGTATGATATCAGA+TGG | - | chr4_1:82386993-82387012 | Msa0577990:intron | 35.0% | |
| GAATACAGGCAAAAACAACA+AGG | + | chr4_1:82387117-82387136 | None:intergenic | 35.0% | |
| CTATGTAGAAATTAGGACCT+GGG | - | chr4_1:82387201-82387220 | Msa0577990:intron | 35.0% | |
| AATAAGGAGGAATTGAAGTG+TGG | - | chr4_1:82387325-82387344 | Msa0577990:intron | 35.0% | |
| GAATTGAAGTGTGGTCTATA+GGG | - | chr4_1:82387334-82387353 | Msa0577990:intron | 35.0% | |
| TTCATTATCTGCATGTTCCT+AGG | + | chr4_1:82387627-82387646 | None:intergenic | 35.0% | |
| TAGGAACATGCAGATAATGA+AGG | - | chr4_1:82387626-82387645 | Msa0577990:intron | 35.0% | |
| TGCAGATAATGAAGGTAGTT+TGG | - | chr4_1:82387634-82387653 | Msa0577990:intron | 35.0% | |
| ATATTGATCCATGGAGATCT+TGG | + | chr4_1:82387665-82387684 | None:intergenic | 35.0% | |
| ! | TAGTCCCCTAGTAATTTGTA+AGG | + | chr4_1:82387743-82387762 | None:intergenic | 35.0% |
| ! | ATGGGCTATTCATGATAAAG+GGG | + | chr4_1:82387814-82387833 | None:intergenic | 35.0% |
| CAAGTCTCTATCATAGCTAA+TGG | + | chr4_1:82387833-82387852 | None:intergenic | 35.0% | |
| CATTAGCTATGATAGAGACT+TGG | - | chr4_1:82387831-82387850 | Msa0577990:intron | 35.0% | |
| !! | TGATGTGGGTATTGGAATTT+GGG | + | chr4_1:82387978-82387997 | None:intergenic | 35.0% |
| !! | TTGATGTGGGTATTGGAATT+TGG | + | chr4_1:82387979-82387998 | None:intergenic | 35.0% |
| ATACTACTTGATGTGGGTAT+TGG | + | chr4_1:82387986-82388005 | None:intergenic | 35.0% | |
| CATCTGATACTACTTGATGT+GGG | + | chr4_1:82387992-82388011 | None:intergenic | 35.0% | |
| ACATCTGATACTACTTGATG+TGG | + | chr4_1:82387993-82388012 | None:intergenic | 35.0% | |
| !! | TATCAGATGTTTGGTGTCAA+GGG | - | chr4_1:82388003-82388022 | Msa0577990:intron | 35.0% |
| ! | GAATATTTGGTGGAGTACTT+AGG | + | chr4_1:82388044-82388063 | None:intergenic | 35.0% |
| ! | ATCGAGGAGTACAGAATATT+TGG | + | chr4_1:82388057-82388076 | None:intergenic | 35.0% |
| AAAAAATCACAATGCAGGTG+CGG | + | chr4_1:82388211-82388230 | None:intergenic | 35.0% | |
| AGAAATCCAAATATTGGCAG+AGG | - | chr4_1:82388351-82388370 | Msa0577990:intron | 35.0% | |
| TTTAGACCTCTGCCAATATT+TGG | + | chr4_1:82388360-82388379 | None:intergenic | 35.0% | |
| AAATATTGGCAGAGGTCTAA+AGG | - | chr4_1:82388359-82388378 | Msa0577990:intron | 35.0% | |
| TTGATTTCGTAGGAACCTAA+AGG | + | chr4_1:82388420-82388439 | None:intergenic | 35.0% | |
| AATCCACAACATGAACATAC+GGG | + | chr4_1:82388523-82388542 | None:intergenic | 35.0% | |
| GAATCCACAACATGAACATA+CGG | + | chr4_1:82388524-82388543 | None:intergenic | 35.0% | |
| !! | GTCTTTAAAGTTGGCAAGTA+AGG | - | chr4_1:82388694-82388713 | Msa0577990:intron | 35.0% |
| ATATACCCATCAGTTTAGCA+CGG | + | chr4_1:82388894-82388913 | None:intergenic | 35.0% | |
| ! | AAACTGATGGGTATATTGAG+TGG | - | chr4_1:82388898-82388917 | Msa0577990:intron | 35.0% |
| AACAGGAGCAAACATAAAAG+CGG | - | chr4_1:82388954-82388973 | Msa0577990:intron | 35.0% | |
| CCAGTAATGGTTTGAGTAAA+AGG | + | chr4_1:82389027-82389046 | None:intergenic | 35.0% | |
| ! | CCTTTTACTCAAACCATTAC+TGG | - | chr4_1:82389024-82389043 | Msa0577990:intron | 35.0% |
| ATTATCAGTTGACAAAGGTG+AGG | - | chr4_1:82389101-82389120 | Msa0577990:intron | 35.0% | |
| ! | GAGATGCATTTTGCTCTTTA+TGG | - | chr4_1:82389252-82389271 | Msa0577990:intron | 35.0% |
| TCAAATGAATCGTTTCCGAA+GGG | - | chr4_1:82389275-82389294 | Msa0577990:intron | 35.0% | |
| !!! | ATTTTTAGCTGGTAAGATGC+AGG | - | chr4_1:82389311-82389330 | Msa0577990:intron | 35.0% |
| GATAAGAAAAGGGGAATAAC+AGG | + | chr4_1:82389555-82389574 | None:intergenic | 35.0% | |
| ATTTGATCACTCACAATGAC+TGG | + | chr4_1:82389729-82389748 | None:intergenic | 35.0% | |
| GTAAAGTTCCAAAACAGAAG+TGG | - | chr4_1:82389846-82389865 | Msa0577990:CDS | 35.0% | |
| ! | ATTTCAGTCCACTTCTGTTT+TGG | + | chr4_1:82389857-82389876 | None:intergenic | 35.0% |
| ATCATTCCGACATTGAAACG+GGG | + | chr4_1:82385288-82385307 | None:intergenic | 40.0% | |
| GATCATTCCGACATTGAAAC+GGG | + | chr4_1:82385289-82385308 | None:intergenic | 40.0% | |
| TGGAAAATCACTAACGGTGA+CGG | + | chr4_1:82385337-82385356 | None:intergenic | 40.0% | |
| ! | TCACCGTTAGTGATTTTCCA+CGG | - | chr4_1:82385337-82385356 | Msa0577990:intron | 40.0% |
| TTTGAAGAAGCAGCATAGTG+TGG | - | chr4_1:82385377-82385396 | Msa0577990:CDS | 40.0% | |
| !! | TAGTGTGGAGTATTGGATGA+TGG | - | chr4_1:82385392-82385411 | Msa0577990:CDS | 40.0% |
| !! | AGTGTGGAGTATTGGATGAT+GGG | - | chr4_1:82385393-82385412 | Msa0577990:CDS | 40.0% |
| !! | AAAAAGGCATCAGCCAATTC+CGG | + | chr4_1:82385468-82385487 | None:intergenic | 40.0% |
| GTTGTCAGATAGCTGCTATA+AGG | - | chr4_1:82385689-82385708 | Msa0577990:intron | 40.0% | |
| ! | AAAGTCACCTCTTGGTAACA+AGG | - | chr4_1:82385909-82385928 | Msa0577990:intron | 40.0% |
| ! | AAGTCACCTCTTGGTAACAA+GGG | - | chr4_1:82385910-82385929 | Msa0577990:intron | 40.0% |
| CCGAGTAATATTAGGAGAGT+TGG | - | chr4_1:82385988-82386007 | Msa0577990:intron | 40.0% | |
| CTATCTAGAAGGCTGGAAAA+AGG | + | chr4_1:82386292-82386311 | None:intergenic | 40.0% | |
| TGAATAACTCTGGACCTGAA+AGG | - | chr4_1:82386346-82386365 | Msa0577990:intron | 40.0% | |
| GAATAACTCTGGACCTGAAA+GGG | - | chr4_1:82386347-82386366 | Msa0577990:intron | 40.0% | |
| TCACAATTCACAACCCTTTC+AGG | + | chr4_1:82386363-82386382 | None:intergenic | 40.0% | |
| TCAATCCAAACACACCCTTA+AGG | + | chr4_1:82386427-82386446 | None:intergenic | 40.0% | |
| ! | TTAAGGGTGTGTTTGGATTG+AGG | - | chr4_1:82386426-82386445 | Msa0577990:intron | 40.0% |
| ! | TAAGGGTGTGTTTGGATTGA+GGG | - | chr4_1:82386427-82386446 | Msa0577990:intron | 40.0% |
| TGTGTTTGGATTGAGGGTTT+AGG | - | chr4_1:82386433-82386452 | Msa0577990:intron | 40.0% | |
| TTTGGATTGAGGGTTTAGGA+GGG | - | chr4_1:82386437-82386456 | Msa0577990:intron | 40.0% | |
| TTTGGATTGAGGGTTTAGGA+GGG | + | chr4_1:82386437-82386456 | None:intergenic | 40.0% | |
| TGTGTTTGGATTGAGGGTTT+AGG | + | chr4_1:82386433-82386452 | None:intergenic | 40.0% | |
| TTAGGGTGTGTTTGGATTGA+GGG | + | chr4_1:82386656-82386675 | None:intergenic | 40.0% | |
| GGGATTGAGAACATCAAGAA+GGG | + | chr4_1:82386898-82386917 | None:intergenic | 40.0% | |
| GGTGGGAATAGGACTTAATT+AGG | - | chr4_1:82387154-82387173 | Msa0577990:intron | 40.0% | |
| CCAGGTCCTAATTTCTACAT+AGG | + | chr4_1:82387203-82387222 | None:intergenic | 40.0% | |
| CCTATGTAGAAATTAGGACC+TGG | - | chr4_1:82387200-82387219 | Msa0577990:intron | 40.0% | |
| ! | TTCTACATCCATCTGAAGCA+AGG | + | chr4_1:82387229-82387248 | None:intergenic | 40.0% |
| GGAATTGAAGTGTGGTCTAT+AGG | - | chr4_1:82387333-82387352 | Msa0577990:intron | 40.0% | |
| ! | GGATAGGTGTCATATCCTAA+GGG | - | chr4_1:82387355-82387374 | Msa0577990:intron | 40.0% |
| ! | GATAGGTGTCATATCCTAAG+GGG | - | chr4_1:82387356-82387375 | Msa0577990:intron | 40.0% |
| ! | ATAGGTGTCATATCCTAAGG+GGG | - | chr4_1:82387357-82387376 | Msa0577990:intron | 40.0% |
| GAGTTCCTGAAGACTTTATG+CGG | - | chr4_1:82387512-82387531 | Msa0577990:intron | 40.0% | |
| ACTTTCCGCATAAAGTCTTC+AGG | + | chr4_1:82387520-82387539 | None:intergenic | 40.0% | |
| GAAGACTTTATGCGGAAAGT+TGG | - | chr4_1:82387520-82387539 | Msa0577990:intron | 40.0% | |
| AGTAGTACCTTAGTAGTCCT+AGG | - | chr4_1:82387607-82387626 | Msa0577990:intron | 40.0% | |
| CTACTTGTAAACCCATGTTC+AGG | + | chr4_1:82387905-82387924 | None:intergenic | 40.0% | |
| GAACATGGGTTTACAAGTAG+AGG | - | chr4_1:82387905-82387924 | Msa0577990:intron | 40.0% | |
| !! | TGGGTATTGGAATTTGGGTT+GGG | + | chr4_1:82387973-82387992 | None:intergenic | 40.0% |
| !! | GTATCAGATGTTTGGTGTCA+AGG | - | chr4_1:82388002-82388021 | Msa0577990:intron | 40.0% |
| !! | ATCAGATGTTTGGTGTCAAG+GGG | - | chr4_1:82388004-82388023 | Msa0577990:intron | 40.0% |
| ! | GAGGAGTACAGAATATTTGG+TGG | + | chr4_1:82388054-82388073 | None:intergenic | 40.0% |
| ATATTCTGTACTCCTCGATG+TGG | - | chr4_1:82388058-82388077 | Msa0577990:intron | 40.0% | |
| TATTCTGTACTCCTCGATGT+GGG | - | chr4_1:82388059-82388078 | Msa0577990:intron | 40.0% | |
| GGGACTAGGATATAATGATG+AGG | + | chr4_1:82388094-82388113 | None:intergenic | 40.0% | |
| GTTATACAGTTATAGGCGTC+AGG | + | chr4_1:82388261-82388280 | None:intergenic | 40.0% | |
| TGTTATATTGGGCGTGTTTC+TGG | - | chr4_1:82388300-82388319 | Msa0577990:intron | 40.0% | |
| GGTGTGTCATAGGAAATACA+TGG | + | chr4_1:82388391-82388410 | None:intergenic | 40.0% | |
| ATCCACAACATGAACATACG+GGG | + | chr4_1:82388522-82388541 | None:intergenic | 40.0% | |
| TATGTATCCACCTTGAATCG+TGG | + | chr4_1:82388767-82388786 | None:intergenic | 40.0% | |
| ATTGTCCGTGCTAAACTGAT+GGG | - | chr4_1:82388886-82388905 | Msa0577990:intron | 40.0% | |
| CATAAAAGCGGTATGCTATG+TGG | - | chr4_1:82388966-82388985 | Msa0577990:intron | 40.0% | |
| ! | GTGAGGATCCCTTTAAAAAG+AGG | - | chr4_1:82389118-82389137 | Msa0577990:intron | 40.0% |
| TGCTCAGACTCAGAACAAAT+GGG | + | chr4_1:82389222-82389241 | None:intergenic | 40.0% | |
| ATGCTCAGACTCAGAACAAA+TGG | + | chr4_1:82389223-82389242 | None:intergenic | 40.0% | |
| GTCAAATGAATCGTTTCCGA+AGG | - | chr4_1:82389274-82389293 | Msa0577990:intron | 40.0% | |
| ! | GAGAACCTGAAACTTCCTTT+TGG | - | chr4_1:82389456-82389475 | Msa0577990:intron | 40.0% |
| TCAAAAAGGCGACAAGATGA+TGG | + | chr4_1:82389684-82389703 | None:intergenic | 40.0% | |
| GACTCACAATGGCATCAAAA+AGG | + | chr4_1:82389698-82389717 | None:intergenic | 40.0% | |
| !!! | GTTTTGGAACTTTACGAAGC+TGG | + | chr4_1:82389841-82389860 | None:intergenic | 40.0% |
| !! | AACAGAAGTGGACTGAAATG+TGG | - | chr4_1:82389858-82389877 | Msa0577990:CDS | 40.0% |
| GGAAAATCACTAACGGTGAC+GGG | + | chr4_1:82385336-82385355 | None:intergenic | 45.0% | |
| CCACCGTGGAAAATCACTAA+CGG | + | chr4_1:82385343-82385362 | None:intergenic | 45.0% | |
| TTCTTCAAACCCCAATTCCC+CGG | + | chr4_1:82385366-82385385 | None:intergenic | 45.0% | |
| AGCAGCATAGTGTGGAGTAT+TGG | - | chr4_1:82385385-82385404 | Msa0577990:CDS | 45.0% | |
| !! | ATGGGATCGCTTTTACATGC+TGG | - | chr4_1:82385411-82385430 | Msa0577990:CDS | 45.0% |
| !! | TCGCTTTTACATGCTGGTGA+TGG | - | chr4_1:82385417-82385436 | Msa0577990:CDS | 45.0% |
| !!! | CTTTTACATGCTGGTGATGG+TGG | - | chr4_1:82385420-82385439 | Msa0577990:CDS | 45.0% |
| CAATTTCCGATCAATCTCCG+TGG | + | chr4_1:82385548-82385567 | None:intergenic | 45.0% | |
| GGAGATTGATCGGAAATTGC+AGG | - | chr4_1:82385549-82385568 | Msa0577990:intron | 45.0% | |
| TACCTGCAAACAAGGACAGT+AGG | - | chr4_1:82385886-82385905 | Msa0577990:intron | 45.0% | |
| ! | TTCCTACTGTCCTTGTTTGC+AGG | + | chr4_1:82385891-82385910 | None:intergenic | 45.0% |
| ACAGTAGGAAAGTCACCTCT+TGG | - | chr4_1:82385901-82385920 | Msa0577990:intron | 45.0% | |
| ! | AGTCACCTCTTGGTAACAAG+GGG | - | chr4_1:82385911-82385930 | Msa0577990:intron | 45.0% |
| ! | CAACCCTTGATCTGAAGTGA+TGG | - | chr4_1:82386265-82386284 | Msa0577990:intron | 45.0% |
| ! | TGGAACCTTAAGGGTGTGTT+TGG | - | chr4_1:82386419-82386438 | Msa0577990:intron | 45.0% |
| GTTTGGATTGAGGGTTTAGG+AGG | - | chr4_1:82386436-82386455 | Msa0577990:intron | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | - | chr4_1:82386438-82386457 | Msa0577990:intron | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | + | chr4_1:82386438-82386457 | None:intergenic | 45.0% | |
| GTTTGGATTGAGGGTTTAGG+AGG | + | chr4_1:82386436-82386455 | None:intergenic | 45.0% | |
| CTTAGGGTGTGTTTGGATTG+AGG | + | chr4_1:82386657-82386676 | None:intergenic | 45.0% | |
| CAATCCAAACACACCCTAAG+AGG | - | chr4_1:82386657-82386676 | Msa0577990:CDS | 45.0% | |
| AGAACCTCTTAGGGTGTGTT+TGG | + | chr4_1:82386664-82386683 | None:intergenic | 45.0% | |
| GGGGATTGAGAACATCAAGA+AGG | + | chr4_1:82386899-82386918 | None:intergenic | 45.0% | |
| CAGACTATGTAGTCTCTCAG+AGG | - | chr4_1:82387067-82387086 | Msa0577990:intron | 45.0% | |
| ATGGTCAACGCAAGGAATAC+AGG | + | chr4_1:82387131-82387150 | None:intergenic | 45.0% | |
| ! | ATTCCTTGCGTTGACCATGA+TGG | - | chr4_1:82387133-82387152 | Msa0577990:intron | 45.0% |
| !! | TTGACCATGATGGTGGGAAT+AGG | - | chr4_1:82387143-82387162 | Msa0577990:intron | 45.0% |
| AAGTCCTATTCCCACCATCA+TGG | + | chr4_1:82387150-82387169 | None:intergenic | 45.0% | |
| ATTGCAGATTGCCAACGCAT+GGG | + | chr4_1:82387266-82387285 | None:intergenic | 45.0% | |
| GAAGTGTGGTCTATAGGGAT+AGG | - | chr4_1:82387339-82387358 | Msa0577990:intron | 45.0% | |
| ! | GGGATAGGTGTCATATCCTA+AGG | - | chr4_1:82387354-82387373 | Msa0577990:intron | 45.0% |
| GCATGTTCCTAGGACTACTA+AGG | + | chr4_1:82387617-82387636 | None:intergenic | 45.0% | |
| TGGTTAAGCCAAGATCTCCA+TGG | - | chr4_1:82387654-82387673 | Msa0577990:intron | 45.0% | |
| GATGTGGGACTCTTAACAGT+GGG | + | chr4_1:82387869-82387888 | None:intergenic | 45.0% | |
| CACTGTTAAGAGTCCCACAT+CGG | - | chr4_1:82387868-82387887 | Msa0577990:intron | 45.0% | |
| AAGAGACAAGGCCTGAACAT+GGG | - | chr4_1:82387891-82387910 | Msa0577990:intron | 45.0% | |
| CTAACTCAGCCTTACAACAC+CGG | + | chr4_1:82387949-82387968 | None:intergenic | 45.0% | |
| !! | GTGGGTATTGGAATTTGGGT+TGG | + | chr4_1:82387974-82387993 | None:intergenic | 45.0% |
| !! | TCAGATGTTTGGTGTCAAGG+GGG | - | chr4_1:82388005-82388024 | Msa0577990:intron | 45.0% |
| AGGATAGTTTGATGGGGACT+AGG | + | chr4_1:82388108-82388127 | None:intergenic | 45.0% | |
| !! | CTGGTGTTAGGTTGATCTGA+TGG | - | chr4_1:82388319-82388338 | Msa0577990:intron | 45.0% |
| !! | GTAGGAACCTAAAGGCATTG+GGG | + | chr4_1:82388412-82388431 | None:intergenic | 45.0% |
| !! | CGTAGGAACCTAAAGGCATT+GGG | + | chr4_1:82388413-82388432 | None:intergenic | 45.0% |
| ! | TCGTAGGAACCTAAAGGCAT+TGG | + | chr4_1:82388414-82388433 | None:intergenic | 45.0% |
| TAGACATTCCCTTAGGGTAG+CGG | + | chr4_1:82388478-82388497 | None:intergenic | 45.0% | |
| !! | TCCACACTGCTTTTCTTTCG+AGG | - | chr4_1:82388584-82388603 | Msa0577990:intron | 45.0% |
| !! | CCACACTGCTTTTCTTTCGA+GGG | - | chr4_1:82388585-82388604 | Msa0577990:intron | 45.0% |
| TCTCAACTCACCACGATTCA+AGG | - | chr4_1:82388754-82388773 | Msa0577990:intron | 45.0% | |
| GGTTTGTGATGTTTGCAGGA+AGG | - | chr4_1:82388862-82388881 | Msa0577990:intron | 45.0% | |
| CATTGTCCGTGCTAAACTGA+TGG | - | chr4_1:82388885-82388904 | Msa0577990:intron | 45.0% | |
| !! | TATGAGCGAAGTGTTGCAAC+AGG | - | chr4_1:82388937-82388956 | Msa0577990:intron | 45.0% |
| AAGTTCTGTTTGCATCCAGC+AGG | - | chr4_1:82389651-82389670 | Msa0577990:intron | 45.0% | |
| TGGAACACAGTGACTCACAA+TGG | + | chr4_1:82389709-82389728 | None:intergenic | 45.0% | |
| !! | TTCAAAGAGGCATTACAGCC+TGG | - | chr4_1:82389803-82389822 | Msa0577990:CDS | 45.0% |
| !! | AGAAGTGGACTGAAATGTGG+AGG | - | chr4_1:82389861-82389880 | Msa0577990:CDS | 45.0% |
| ATTCCGACATTGAAACGGGG+CGG | + | chr4_1:82385285-82385304 | None:intergenic | 50.0% | |
| ATGTCGGAATGATCACTCGC+CGG | - | chr4_1:82385295-82385314 | Msa0577990:CDS | 50.0% | |
| ! | CCGTTAGTGATTTTCCACGG+TGG | - | chr4_1:82385340-82385359 | Msa0577990:intron | 50.0% |
| ! | TAGTGATTTTCCACGGTGGC+CGG | - | chr4_1:82385344-82385363 | Msa0577990:intron | 50.0% |
| !! | TGATGGTGGTGAAGCTGTGA+GGG | - | chr4_1:82385434-82385453 | Msa0577990:CDS | 50.0% |
| ! | TGGTGAAGCTGTGAGGGTTT+TGG | - | chr4_1:82385440-82385459 | Msa0577990:CDS | 50.0% |
| !!! | AGCTGTGAGGGTTTTGGATC+CGG | - | chr4_1:82385446-82385465 | Msa0577990:CDS | 50.0% |
| !!! | GAGGGTTTTGGATCCGGAAT+TGG | - | chr4_1:82385452-82385471 | Msa0577990:CDS | 50.0% |
| !! | TACTATGACGGATCCTGCCA+CGG | - | chr4_1:82385528-82385547 | Msa0577990:intron | 50.0% |
| ATCCTGCCACGGAGATTGAT+CGG | - | chr4_1:82385539-82385558 | Msa0577990:intron | 50.0% | |
| CACTTCCCCTTGTTACCAAG+AGG | + | chr4_1:82385919-82385938 | None:intergenic | 50.0% | |
| ! | CTCTTGGTAACAAGGGGAAG+TGG | - | chr4_1:82385917-82385936 | Msa0577990:intron | 50.0% |
| GGGCCATCACTTCAGATCAA+GGG | + | chr4_1:82386271-82386290 | None:intergenic | 50.0% | |
| AGGGCCATCACTTCAGATCA+AGG | + | chr4_1:82386272-82386291 | None:intergenic | 50.0% | |
| ATTGAGGGTTTAGGAGGGGA+AGG | - | chr4_1:82386442-82386461 | Msa0577990:intron | 50.0% | |
| TTGAGGGTTTAGGAGGGGAA+GGG | - | chr4_1:82386443-82386462 | Msa0577990:intron | 50.0% | |
| TTGAGGGTTTAGGAGGGGAA+GGG | + | chr4_1:82386443-82386462 | None:intergenic | 50.0% | |
| ATTGAGGGTTTAGGAGGGGA+AGG | + | chr4_1:82386442-82386461 | None:intergenic | 50.0% | |
| ! | CTTGCGTTGACCATGATGGT+GGG | - | chr4_1:82387137-82387156 | Msa0577990:intron | 50.0% |
| GTCCTGATATTCCCATGCGT+TGG | - | chr4_1:82387252-82387271 | Msa0577990:intron | 50.0% | |
| TGCCAACGCATGGGAATATC+AGG | + | chr4_1:82387257-82387276 | None:intergenic | 50.0% | |
| GATTGCAGATTGCCAACGCA+TGG | + | chr4_1:82387267-82387286 | None:intergenic | 50.0% | |
| CGATGTGGGACTCTTAACAG+TGG | + | chr4_1:82387870-82387889 | None:intergenic | 50.0% | |
| GAAGAGACAAGGCCTGAACA+TGG | - | chr4_1:82387890-82387909 | Msa0577990:intron | 50.0% | |
| GCAGTCTTCACCTTACAAGC+CGG | - | chr4_1:82387927-82387946 | Msa0577990:intron | 50.0% | |
| !! | CCTTACAACACCGGCTTGTA+AGG | + | chr4_1:82387940-82387959 | None:intergenic | 50.0% |
| !! | CCTTACAAGCCGGTGTTGTA+AGG | - | chr4_1:82387937-82387956 | Msa0577990:intron | 50.0% |
| !! | CGGTGTTGTAAGGCTGAGTT+AGG | - | chr4_1:82387947-82387966 | Msa0577990:intron | 50.0% |
| ! | GGTGGAGTACTTAGGTAGCT+TGG | + | chr4_1:82388036-82388055 | None:intergenic | 50.0% |
| AATCACAATGCAGGTGCGGA+AGG | + | chr4_1:82388207-82388226 | None:intergenic | 50.0% | |
| !! | TTGGGCGTGTTTCTGGTGTT+AGG | - | chr4_1:82388307-82388326 | Msa0577990:intron | 50.0% |
| !! | AAGGCATTGGGGTGTGTCAT+AGG | + | chr4_1:82388401-82388420 | None:intergenic | 50.0% |
| TGACACACCCCAATGCCTTT+AGG | - | chr4_1:82388402-82388421 | Msa0577990:intron | 50.0% | |
| !! | GATTTTGGCCGCTACCCTAA+GGG | - | chr4_1:82388467-82388486 | Msa0577990:intron | 50.0% |
| GTCCCCGTATGTTCATGTTG+TGG | - | chr4_1:82388517-82388536 | Msa0577990:intron | 50.0% | |
| CGAATCTCGTACGGATCTTG+AGG | + | chr4_1:82388563-82388582 | None:intergenic | 50.0% | |
| AGTGTGGAGCGAATCTCGTA+CGG | + | chr4_1:82388572-82388591 | None:intergenic | 50.0% | |
| CCCTCGAAAGAAAAGCAGTG+TGG | + | chr4_1:82388588-82388607 | None:intergenic | 50.0% | |
| !! | CACTGCTTTTCTTTCGAGGG+AGG | - | chr4_1:82388588-82388607 | Msa0577990:intron | 50.0% |
| TCTTTCGAGGGAGGACTTTC+AGG | - | chr4_1:82388597-82388616 | Msa0577990:intron | 50.0% | |
| CAACTCACCACGATTCAAGG+TGG | - | chr4_1:82388757-82388776 | Msa0577990:intron | 50.0% | |
| GTGGGGTTTGTGATGTTTGC+AGG | - | chr4_1:82388858-82388877 | Msa0577990:intron | 50.0% | |
| AGGGACTGAACAGTTGTGTG+TGG | - | chr4_1:82389168-82389187 | Msa0577990:intron | 50.0% | |
| TTCCGACATTGAAACGGGGC+GGG | + | chr4_1:82385284-82385303 | None:intergenic | 55.0% | |
| ! | AGTGATTTTCCACGGTGGCC+GGG | - | chr4_1:82385345-82385364 | Msa0577990:intron | 55.0% |
| !! | GTGATGGTGGTGAAGCTGTG+AGG | - | chr4_1:82385433-82385452 | Msa0577990:CDS | 55.0% |
| TTCCGATCAATCTCCGTGGC+AGG | + | chr4_1:82385544-82385563 | None:intergenic | 55.0% | |
| AACAAGGGGAAGTGGTTGCC+TGG | - | chr4_1:82385925-82385944 | Msa0577990:intron | 55.0% | |
| GAGTTGGATCTCCCAGACAG+AGG | - | chr4_1:82386004-82386023 | Msa0577990:intron | 55.0% | |
| GGTTTAGGAGGGGAAGGGAA+GGG | + | chr4_1:82386635-82386654 | None:intergenic | 55.0% | |
| CCACCATCATGGTCAACGCA+AGG | + | chr4_1:82387139-82387158 | None:intergenic | 55.0% | |
| ! | CCTTGCGTTGACCATGATGG+TGG | - | chr4_1:82387136-82387155 | Msa0577990:intron | 55.0% |
| ! | CCATCTGAAGCAAGGAACCC+AGG | + | chr4_1:82387221-82387240 | None:intergenic | 55.0% |
| CCTGGGTTCCTTGCTTCAGA+TGG | - | chr4_1:82387218-82387237 | Msa0577990:intron | 55.0% | |
| GTCCCACATCGGAAGAGACA+AGG | - | chr4_1:82387879-82387898 | Msa0577990:intron | 55.0% | |
| ! | GGCCTTGTCTCTTCCGATGT+GGG | + | chr4_1:82387884-82387903 | None:intergenic | 55.0% |
| ! | AGGCCTTGTCTCTTCCGATG+TGG | + | chr4_1:82387885-82387904 | None:intergenic | 55.0% |
| GGCTCTTAAGTCCCACATCG+AGG | + | chr4_1:82388073-82388092 | None:intergenic | 55.0% | |
| !! | GGATTTTGGCCGCTACCCTA+AGG | - | chr4_1:82388466-82388485 | Msa0577990:intron | 55.0% |
| TCGAGGGAGGACTTTCAGGA+AGG | - | chr4_1:82388601-82388620 | Msa0577990:intron | 55.0% | |
| ! | GATGATGGTGTGTCTCCTGC+TGG | + | chr4_1:82389669-82389688 | None:intergenic | 55.0% |
| GGCATTACAGCCTGGCTACA+TGG | - | chr4_1:82389811-82389830 | Msa0577990:CDS | 55.0% | |
| AGCTGGTCAACCATGTAGCC+AGG | + | chr4_1:82389824-82389843 | None:intergenic | 55.0% | |
| CTCCCGCCCCGTTTCAATGT+CGG | - | chr4_1:82385279-82385298 | Msa0577990:CDS | 60.0% | |
| GATCACTCGCCGGAACACGT+CGG | - | chr4_1:82385305-82385324 | Msa0577990:CDS | 60.0% | |
| ! | GTGATTTTCCACGGTGGCCG+GGG | - | chr4_1:82385346-82385365 | Msa0577990:intron | 60.0% |
| AGGGTTTAGGAGGGGAAGGG+AGG | - | chr4_1:82386446-82386465 | Msa0577990:intron | 60.0% | |
| GGGTTTAGGAGGGGAAGGGA+GGG | - | chr4_1:82386447-82386466 | Msa0577990:intron | 60.0% | |
| GGTTTAGGAGGGGAAGGGAG+GGG | - | chr4_1:82386448-82386467 | Msa0577990:intron | 60.0% | |
| TAGGAGGGGAAGGGAAGGGA+GGG | + | chr4_1:82386631-82386650 | None:intergenic | 60.0% | |
| TTAGGAGGGGAAGGGAAGGG+AGG | + | chr4_1:82386632-82386651 | None:intergenic | 60.0% | |
| GGGTTTAGGAGGGGAAGGGA+AGG | + | chr4_1:82386447-82386466 | None:intergenic | 60.0% | |
| ! | ACATAGGGGCATGCCCCCTT+AGG | + | chr4_1:82387373-82387392 | None:intergenic | 60.0% |
| CGGGAGTCTCCGACGTGTTC+CGG | + | chr4_1:82385317-82385336 | None:intergenic | 65.0% | |
| TTCCACGGTGGCCGGGGAAT+TGG | - | chr4_1:82385352-82385371 | Msa0577990:intron | 65.0% | |
| TCCACGGTGGCCGGGGAATT+GGG | - | chr4_1:82385353-82385372 | Msa0577990:intron | 65.0% | |
| TAGGAGGGGAAGGGAGGGGA+AGG | - | chr4_1:82386452-82386471 | Msa0577990:intron | 65.0% | |
| CCACGGTGGCCGGGGAATTG+GGG | - | chr4_1:82385354-82385373 | Msa0577990:intron | 70.0% | |
| CCCCAATTCCCCGGCCACCG+TGG | + | chr4_1:82385357-82385376 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 82385270 | 82389886 | 82385270 | ID=Msa0577990;Name=Msa0577990 |
| chr4_1 | mRNA | 82385270 | 82389886 | 82385270 | ID=Msa0577990-mRNA-1;Parent=Msa0577990;Name=Msa0577990-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.4|0.16|1|0.4|0.16|6|0|265 |
| chr4_1 | exon | 82389668 | 82389886 | 82389668 | ID=Msa0577990-mRNA-1:exon:29866;Parent=Msa0577990-mRNA-1 |
| chr4_1 | exon | 82386784 | 82386827 | 82386784 | ID=Msa0577990-mRNA-1:exon:29865;Parent=Msa0577990-mRNA-1 |
| chr4_1 | exon | 82386531 | 82386732 | 82386531 | ID=Msa0577990-mRNA-1:exon:29864;Parent=Msa0577990-mRNA-1 |
| chr4_1 | exon | 82386181 | 82386276 | 82386181 | ID=Msa0577990-mRNA-1:exon:29863;Parent=Msa0577990-mRNA-1 |
| chr4_1 | exon | 82385373 | 82385529 | 82385373 | ID=Msa0577990-mRNA-1:exon:29862;Parent=Msa0577990-mRNA-1 |
| chr4_1 | exon | 82385270 | 82385346 | 82385270 | ID=Msa0577990-mRNA-1:exon:29861;Parent=Msa0577990-mRNA-1 |
| chr4_1 | CDS | 82389668 | 82389886 | 82389668 | ID=Msa0577990-mRNA-1:cds;Parent=Msa0577990-mRNA-1 |
| chr4_1 | CDS | 82386784 | 82386827 | 82386784 | ID=Msa0577990-mRNA-1:cds;Parent=Msa0577990-mRNA-1 |
| chr4_1 | CDS | 82386531 | 82386732 | 82386531 | ID=Msa0577990-mRNA-1:cds;Parent=Msa0577990-mRNA-1 |
| chr4_1 | CDS | 82386181 | 82386276 | 82386181 | ID=Msa0577990-mRNA-1:cds;Parent=Msa0577990-mRNA-1 |
| chr4_1 | CDS | 82385373 | 82385529 | 82385373 | ID=Msa0577990-mRNA-1:cds;Parent=Msa0577990-mRNA-1 |
| chr4_1 | CDS | 82385270 | 82385346 | 82385270 | ID=Msa0577990-mRNA-1:cds;Parent=Msa0577990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
