AlfalfaGEDB | Msa0705600

M. sativa cultivar zhongmu-4 / Msa0705600

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0010035 GO:0010038 GO:0010039 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896
PFAM: PF01722.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0705600	XP_003630182.1	98.925	93	1	0	1	93	1	93	3.92e-60	188

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0705600	sp\|Q9FIC3\|BOLA2_ARATH	86.076	79	11	0	3	81	2	80	3.20e-45	143

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0705600	G7LC99	98.925	93	1	0	1	93	1	93	1.87e-60	188

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0705600	-0.804375	2.226888e-49	-8.615850e-47
Msa0000590	Msa0705600	0.808303	3.309592e-50	-8.615850e-47
Msa0004950	Msa0705600	0.801706	7.933506e-49	-8.615850e-47
Msa0006880	Msa0705600	0.846748	1.787214e-59	-8.615850e-47
Msa0008840	Msa0705600	0.816716	4.790458e-52	-8.615850e-47
Msa0015460	Msa0705600	0.810897	9.171141e-51	-8.615850e-47
Msa0027580	Msa0705600	0.822084	2.862278e-53	-8.615850e-47
Msa0029260	Msa0705600	0.814934	1.196375e-51	-8.615850e-47
Msa0031510	Msa0705600	0.823213	1.563004e-53	-8.615850e-47
Msa0036370	Msa0705600	0.810593	1.067371e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0705600	MtrunA17_Chr8g0383761	98.925	93	1	0	1	93	1	93	3.61e-64	188

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0705600	AT5G09830.1	86.076	79	11	0	3	81	2	80	3.25e-46	143

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Find 45 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTTACAAGATGGGAA+GGG	0.654898	4_4:-78395171	None:intergenic
AAACAATGCATGACTTATGA+AGG	0.436982	4_4:+78397284	Msa0705600:three_prime_UTR
AAAGTGCTTGACTTTCAGTG+GGG	0.752919	4_4:+78397160	Msa0705600:three_prime_UTR
AAATCCTTACAATATGTTGC+TGG	0.434932	4_4:+78397059	Msa0705600:three_prime_UTR
AACTTGCCGTTGCTCACACG+CGG	0.606776	4_4:-78395029	None:intergenic
AACTTGTTGACTTGAATGCG+TGG	0.616658	4_4:+78397396	Msa0705600:three_prime_UTR
AAGATGGGAAGGGTTGAGTC+TGG	0.467675	4_4:-78395161	None:intergenic
AAGCTGTAACTCCAGAACAG+TGG	0.652784	4_4:+78396971	Msa0705600:CDS
AAGTAACTGATATATCTGGA+GGG	0.667213	4_4:+78396712	Msa0705600:CDS
AATGGTGAATGCTGCCTTGG+AGG	0.528246	4_4:+78396912	Msa0705600:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTACACGAGAAATTGAAGAA+CGG	+	chr4_4:78395082-78395101	Msa0705600:five_prime_UTR	30.0%
GAAAGAAAAGCTTACAAGAT+GGG	-	chr4_4:78395179-78395198	None:intergenic	30.0%
AACATGGTGTGTTGAAATTA+AGG	-	chr4_4:78395252-78395271	None:intergenic	30.0%
ATCATAGTTGAGTATGCTAA+TGG	-	chr4_4:78395295-78395314	None:intergenic	30.0%
CATACTCAACTATGATGTTT+AGG	+	chr4_4:78395299-78395318	Msa0705600:intron	30.0%
AAAATAATTAGGGCTTAGGA+TGG	-	chr4_4:78395340-78395359	None:intergenic	30.0%
GTTCAAAATAATTAGGGCTT+AGG	-	chr4_4:78395344-78395363	None:intergenic	30.0%
AAATCCCTAATTGTGTAAGA+CGG	+	chr4_4:78395424-78395443	Msa0705600:intron	30.0%
GCATGAATATTGAATACAAC+GGG	-	chr4_4:78395654-78395673	None:intergenic	30.0%
CACTAATTTAACAGTCTCTT+CGG	-	chr4_4:78395753-78395772	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	78394996	78397443	78394996	ID=Msa0705600;Name=Msa0705600
chr4_4	mRNA	78394996	78397443	78394996	ID=Msa0705600-mRNA-1;Parent=Msa0705600;Name=Msa0705600-mRNA-1;_AED=0.21;_eAED=0.21;_QI=125\|1\|1\|1\|1\|1\|3\|408\|93
chr4_4	exon	78394996	78395183	78394996	ID=Msa0705600-mRNA-1:exon:25007;Parent=Msa0705600-mRNA-1
chr4_4	exon	78396711	78396733	78396711	ID=Msa0705600-mRNA-1:exon:25008;Parent=Msa0705600-mRNA-1
chr4_4	exon	78396840	78397443	78396840	ID=Msa0705600-mRNA-1:exon:25009;Parent=Msa0705600-mRNA-1
chr4_4	five_prime_UTR	78394996	78395120	78394996	ID=Msa0705600-mRNA-1:five_prime_utr;Parent=Msa0705600-mRNA-1
chr4_4	CDS	78395121	78395183	78395121	ID=Msa0705600-mRNA-1:cds;Parent=Msa0705600-mRNA-1
chr4_4	CDS	78396711	78396733	78396711	ID=Msa0705600-mRNA-1:cds;Parent=Msa0705600-mRNA-1
chr4_4	CDS	78396840	78397035	78396840	ID=Msa0705600-mRNA-1:cds;Parent=Msa0705600-mRNA-1
chr4_4	three_prime_UTR	78397036	78397443	78397036	ID=Msa0705600-mRNA-1:three_prime_utr;Parent=Msa0705600-mRNA-1

Gene Sequence	>Msa0705600 ATGGGTGTGACAAAGGAACAAGTCGAATCATCTTTGAACTCCAGACTCAACCCTTCCCATCTTGAAGTAACTGATATATCTGGAGGGTGTGGTTCAAGTTTTGCAGTTGAGATTGTTTCAGAACAATTTGAAGGAAAAAGGCTATTGGAAAGGCATCGAATGGTGAATGCTGCCTTGGAGGAGGAAATGAAAGAGATTCATGCACTCTCTGTAAAGAAAGCTGTAACTCCAGAACAGTGGAAAAAACAGCAAGAGTCCAACCAATCAAATCCCGCGGCCTAG
Protein sequence	>Msa0705600 MGVTKEQVESSLNSRLNPSHLEVTDISGGCGSSFAVEIVSEQFEGKRLLERHRMVNAALEEEMKEIHALSVKKAVTPEQWKKQQESNQSNPAA*