AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0183460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0183460 MtrunA17_Chr1g0211051 100.000 201 0 0 3 203 108 308 8.27e-147 410
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0183460 AT2G16860.2 82.500 200 35 0 4 203 99 298 1.35e-123 351
Msa0183460 AT2G16860.1 82.500 200 35 0 4 203 99 298 1.35e-123 351

Find 58 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAATGCTGGGAAGTTTAAA+TGG 0.249290 1_4:+72405517 Msa0183460:three_prime_UTR
TACATCGACCTCAATGTTCT+TGG 0.295867 1_4:-72405068 None:intergenic
GAAGCATCACGGTAGAATTC+TGG 0.315653 1_4:-72405121 None:intergenic
CAGAAGAGAAATACAAGAAA+TGG 0.332825 1_4:+72403467 Msa0183460:CDS
GATTCAAGTCATTTGCATCT+AGG 0.359899 1_4:-72405727 None:intergenic
GACAGTATACCTTTCCATAC+TGG 0.367957 1_4:-72405150 None:intergenic
CGAGCGAGGAACTGCATTGC+CGG 0.368519 1_4:+72405448 Msa0183460:CDS
GGAAAACTTCTTGATGCAAA+TGG 0.374108 1_4:+72403400 Msa0183460:CDS
TCTCATTGTTATTCTAATGC+TGG 0.378311 1_4:+72405504 Msa0183460:three_prime_UTR
AAGAAGATTGAACGGGCCTT+TGG 0.407954 1_4:+72405395 Msa0183460:CDS
TCTTGTTGAAATGCTCATTA+CGG 0.414024 1_4:-72405376 None:intergenic
AAATGGTGGATTGCGTTCTC+TGG 0.417439 1_4:+72405534 Msa0183460:three_prime_UTR
AGGATCCTGCTCCATTCGGC+TGG 0.431794 1_4:+72403494 Msa0183460:CDS
GACAGAGTAAGTGACCTTCA+TGG 0.435569 1_4:-72400414 None:intergenic
CTCATTGTTATTCTAATGCT+GGG 0.435726 1_4:+72405505 Msa0183460:three_prime_UTR
CAGGATGGTACAAGAACTTA+AGG 0.443877 1_4:+72405277 Msa0183460:CDS
AAAACGTAATCAAATTGAAA+TGG 0.446058 1_4:+72403291 Msa0183460:CDS
GATGCTTCAAGTCTCCAGTA+TGG 0.454556 1_4:+72405136 Msa0183460:CDS
AGAAGAGAAATACAAGAAAT+GGG 0.476799 1_4:+72403468 Msa0183460:CDS
GGAGGCTCCAACAGAGTCTA+GGG 0.490980 1_4:+72403333 Msa0183460:CDS
TGGAGGCTCCAACAGAGTCT+AGG 0.495220 1_4:+72403332 Msa0183460:CDS
CCATCCCAGCCGAATGGAGC+AGG 0.495866 1_4:-72403499 None:intergenic
TTGAGTTTGAAGCATTTCCT+TGG 0.508471 1_4:+72405702 Msa0183460:three_prime_UTR
TTTCAACAAGAAGATTGAAC+GGG 0.513427 1_4:+72405388 Msa0183460:CDS
CCTGCTCCATTCGGCTGGGA+TGG 0.514280 1_4:+72403499 Msa0183460:CDS
CCTCAGAGGATAAGATTGAC+AGG 0.514772 1_4:+72405258 Msa0183460:CDS
ACTTCTTGATGCAAATGGAC+TGG 0.525736 1_4:+72403405 Msa0183460:CDS
TGGTACAAGAACTTAAGGAT+AGG 0.540824 1_4:+72405282 Msa0183460:CDS
GAGAAGGATCCTGCTCCATT+CGG 0.549251 1_4:+72403490 Msa0183460:CDS
GAAACACCCCTAGACTCTGT+TGG 0.552933 1_4:-72403340 None:intergenic
GAAATACAAGAAATGGGAGA+AGG 0.559598 1_4:+72403474 Msa0183460:CDS
GGCTAATGAAAAGAAGAGGA+TGG 0.564931 1_4:+72403312 Msa0183460:CDS
AGAAACGTAGGGCATTTAGC+AGG 0.569318 1_4:+72405309 Msa0183460:CDS
GGTACAAGAACTTAAGGATA+GGG 0.574451 1_4:+72405283 Msa0183460:CDS
CCTGTCAATCTTATCCTCTG+AGG 0.574499 1_4:-72405258 None:intergenic
AACATACCATCCCAGCCGAA+TGG 0.583714 1_4:-72403505 None:intergenic
GGATCCTGCTCCATTCGGCT+GGG 0.585839 1_4:+72403495 Msa0183460:CDS
CTCCAATGTGTATTTACCAA+AGG 0.590665 1_4:-72405411 None:intergenic
AGAGGATAAGATTGACAGGA+TGG 0.594250 1_4:+72405262 Msa0183460:CDS
ACTGCAGAAGCAAATCAGTC+CGG 0.596042 1_4:-72405467 None:intergenic
AGGATAGGGACGAGAAACGT+AGG 0.596930 1_4:+72405297 Msa0183460:CDS
ATTTCAACAAGAAGATTGAA+CGG 0.602140 1_4:+72405387 Msa0183460:CDS
GGCCTTTGGTAAATACACAT+TGG 0.602906 1_4:+72405409 Msa0183460:CDS
AGCAGAAGTGGCTTGACGAT+AGG 0.605628 1_4:+72403365 Msa0183460:CDS
ATGCTGGGAAGTTTAAATGG+TGG 0.609597 1_4:+72405520 Msa0183460:three_prime_UTR
AAATGGCTAATGAAAAGAAG+AGG 0.612031 1_4:+72403308 Msa0183460:CDS
TTCAAGTCTCCAGTATGGAA+AGG 0.627917 1_4:+72405141 Msa0183460:CDS
GGACTGATTTGCTTCTGCAG+TGG 0.634288 1_4:+72405469 Msa0183460:exon
GGATAGGGACGAGAAACGTA+GGG 0.635157 1_4:+72405298 Msa0183460:CDS
GGGGTGTTTCGAAGCAGAAG+TGG 0.643438 1_4:+72403353 Msa0183460:CDS
ACTGGAGACTTGAAGCATCA+CGG 0.643816 1_4:-72405132 None:intergenic
TCATTTGCATCTAGGTACCA+AGG 0.644622 1_4:-72405719 None:intergenic
ATATATGCTTGACACACAAG+AGG 0.658090 1_4:+72403441 Msa0183460:CDS
AAAGCGAACCAAGAACATTG+AGG 0.660498 1_4:+72405060 Msa0183460:CDS
AAATGGACTGGATATGACAA+AGG 0.684378 1_4:+72403417 Msa0183460:CDS
TAATGAAAAGAAGAGGATGG+AGG 0.705005 1_4:+72403315 Msa0183460:CDS
GAGGCTCCAACAGAGTCTAG+GGG 0.720122 1_4:+72403334 Msa0183460:CDS
TATGCACATATGGAGCATTG+TGG 0.763355 1_4:+72405599 Msa0183460:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATAATATGTAAACAAA+TGG + chr1_4:72401056-72401075 Msa0183460:intron 10.0%
!!! ATATTTTTGTATCTTATTTT+TGG + chr1_4:72401539-72401558 Msa0183460:intron 10.0%
!!! TTTTTTGACATTATTAAATT+TGG - chr1_4:72401789-72401808 None:intergenic 10.0%
!! TATAAATGAAATTATCAATT+TGG - chr1_4:72402599-72402618 None:intergenic 10.0%
!!! ATTGATAATTTCATTTATAA+CGG + chr1_4:72402600-72402619 Msa0183460:intron 10.0%
!!! TATCTATTTTAAGATAAATT+GGG - chr1_4:72403859-72403878 None:intergenic 10.0%
!! ATAATTCTATAAATAATCAT+GGG - chr1_4:72404338-72404357 None:intergenic 10.0%
!!! TTAAATATATGTTTTTTTGT+TGG + chr1_4:72404524-72404543 Msa0183460:intron 10.0%
!! AAAAAATTAAAATAAGATAG+AGG - chr1_4:72404599-72404618 None:intergenic 10.0%
!! TATATCTTATCAACAATATT+AGG + chr1_4:72400798-72400817 Msa0183460:intron 15.0%
!! TTGTTTACATATTATATATG+AGG - chr1_4:72401055-72401074 None:intergenic 15.0%
!! CAGTACTAAAAAAAAAAAAA+CGG + chr1_4:72401602-72401621 Msa0183460:intron 15.0%
!!! TTAACATTTTAATTCTGTTA+TGG + chr1_4:72401992-72402011 Msa0183460:intron 15.0%
!! TTACAGAAAAATATTTATCA+TGG - chr1_4:72402021-72402040 None:intergenic 15.0%
!! TTATTATAATAATTTGACAG+TGG - chr1_4:72402381-72402400 None:intergenic 15.0%
!! ACTGTCAAATTATTATAATA+AGG + chr1_4:72402380-72402399 Msa0183460:intron 15.0%
!! GTTTAATAAAATAGATAATG+AGG - chr1_4:72402441-72402460 None:intergenic 15.0%
!! TTTAATTCAATTACAAGATT+GGG - chr1_4:72402565-72402584 None:intergenic 15.0%
!!! TTTTTGTTTTTGTTTAAGTT+AGG + chr1_4:72402934-72402953 Msa0183460:intron 15.0%
!!! ATCTATTTTAAGATAAATTG+GGG - chr1_4:72403858-72403877 None:intergenic 15.0%
!!! CTATCTATTTTAAGATAAAT+TGG - chr1_4:72403860-72403879 None:intergenic 15.0%
!! TAATTCTATAAATAATCATG+GGG - chr1_4:72404337-72404356 None:intergenic 15.0%
!! GATAATTCTATAAATAATCA+TGG - chr1_4:72404339-72404358 None:intergenic 15.0%
!!! AATCATTTACTAACTTTTTA+CGG + chr1_4:72404631-72404650 Msa0183460:intron 15.0%
!!! TCTTTGGTTAATAAATTTTA+GGG - chr1_4:72404762-72404781 None:intergenic 15.0%
!!! ATCTTTGGTTAATAAATTTT+AGG - chr1_4:72404763-72404782 None:intergenic 15.0%
!! ATATTTAAATATTAGTCGAG+TGG + chr1_4:72400529-72400548 Msa0183460:intron 20.0%
!! AGTAATAAGAAAATGTTAGA+CGG - chr1_4:72400568-72400587 None:intergenic 20.0%
!! TCTTATTACTAACATTAACA+TGG + chr1_4:72400578-72400597 Msa0183460:intron 20.0%
!! CTTATTACTAACATTAACAT+GGG + chr1_4:72400579-72400598 Msa0183460:intron 20.0%
!! TTTACATATTATATATGAGG+CGG - chr1_4:72401052-72401071 None:intergenic 20.0%
!!! AAAAAGTAACTTGTAATCAA+CGG - chr1_4:72401250-72401269 None:intergenic 20.0%
!! TTACACTCGTTAAAATAATA+AGG - chr1_4:72401273-72401292 None:intergenic 20.0%
!!! ATACTACAATGATGATTTTA+AGG - chr1_4:72401835-72401854 None:intergenic 20.0%
!! CTTTAATTCAATTACAAGAT+TGG - chr1_4:72402566-72402585 None:intergenic 20.0%
!!! CTTTTCTTTTTTAAGTGTTA+TGG - chr1_4:72402816-72402835 None:intergenic 20.0%
!! AAAACGTAATCAAATTGAAA+TGG + chr1_4:72403291-72403310 Msa0183460:CDS 20.0%
!! GCAATAAAAATAACATTTCT+TGG - chr1_4:72403545-72403564 None:intergenic 20.0%
!!! AGAAATGTTATTTTTATTGC+TGG + chr1_4:72403545-72403564 Msa0183460:intron 20.0%
!! TAGTGTCATATTCAAATTTA+AGG + chr1_4:72403754-72403773 Msa0183460:intron 20.0%
!! AGTGTCATATTCAAATTTAA+GGG + chr1_4:72403755-72403774 Msa0183460:intron 20.0%
!!! TCTATTTTAAGATAAATTGG+GGG - chr1_4:72403857-72403876 None:intergenic 20.0%
!!! AAAAATGCTTTTAGCTTTAA+CGG - chr1_4:72403916-72403935 None:intergenic 20.0%
!! TAATTTACTCCAATAATTTG+TGG + chr1_4:72404280-72404299 Msa0183460:intron 20.0%
!!! AATTTACTCCAATAATTTGT+GGG + chr1_4:72404281-72404300 Msa0183460:intron 20.0%
!!! GAACAAATTGATTTATTCTT+GGG - chr1_4:72404411-72404430 None:intergenic 20.0%
!!! ATTGCATTTTTTTTATCTCT+CGG - chr1_4:72404433-72404452 None:intergenic 20.0%
!! ATATATTAACATAAACCTCA+GGG + chr1_4:72404719-72404738 Msa0183460:intron 20.0%
! TAATAAGAAAATGTTAGACG+GGG - chr1_4:72400566-72400585 None:intergenic 25.0%
! GTAATAAGAAAATGTTAGAC+GGG - chr1_4:72400567-72400586 None:intergenic 25.0%
!!! TTTTTTATCCTTCTACATGT+AGG + chr1_4:72400837-72400856 Msa0183460:intron 25.0%
! ATATATATAACACTCTCTCT+CGG + chr1_4:72400978-72400997 Msa0183460:intron 25.0%
!!! TGTTAGTTTGTTTTAACTAC+AGG + chr1_4:72401082-72401101 Msa0183460:intron 25.0%
!! CATGAATTGTTGATTAATCA+AGG - chr1_4:72401299-72401318 None:intergenic 25.0%
! CAATTCCATTGTAAGTATAT+AGG + chr1_4:72401341-72401360 Msa0183460:intron 25.0%
! AGAAACCTATATACTTACAA+TGG - chr1_4:72401349-72401368 None:intergenic 25.0%
!!! GCTTTGGATATTTTTCTTTT+CGG + chr1_4:72401374-72401393 Msa0183460:intron 25.0%
! TAAATTGTAACGATTCAGTT+TGG + chr1_4:72401501-72401520 Msa0183460:intron 25.0%
! GATGATTGAAATATTTGAGT+TGG - chr1_4:72401669-72401688 None:intergenic 25.0%
! ATATGTAAGATGTTTCAGTA+AGG - chr1_4:72402408-72402427 None:intergenic 25.0%
! ACTGTGTAATATACTAATTG+TGG + chr1_4:72402471-72402490 Msa0183460:intron 25.0%
! CATTTACTTGTATGAACTTA+TGG - chr1_4:72402766-72402785 None:intergenic 25.0%
! TTTGTCAAGTTACAAATACT+TGG + chr1_4:72402788-72402807 Msa0183460:intron 25.0%
! AGAAGAGAAATACAAGAAAT+GGG + chr1_4:72403468-72403487 Msa0183460:CDS 25.0%
!! TGTTGAGTTTAAAACTAGAA+GGG - chr1_4:72403827-72403846 None:intergenic 25.0%
!! TTTGTAGAGTTGATTGAAAA+TGG + chr1_4:72404145-72404164 Msa0183460:intron 25.0%
!!! GTTTTCTAGAAATTGATTGA+GGG - chr1_4:72404184-72404203 None:intergenic 25.0%
!!! TGTTTTCTAGAAATTGATTG+AGG - chr1_4:72404185-72404204 None:intergenic 25.0%
! ATGAACTTGAAACAAAAACA+AGG + chr1_4:72404218-72404237 Msa0183460:intron 25.0%
! TGAACTTGAAACAAAAACAA+GGG + chr1_4:72404219-72404238 Msa0183460:intron 25.0%
! AAAAATGTCCCACAAATTAT+TGG - chr1_4:72404292-72404311 None:intergenic 25.0%
!!! TTACCAGTATGTGTTTTTAT+TGG - chr1_4:72404387-72404406 None:intergenic 25.0%
!! GGAACAAATTGATTTATTCT+TGG - chr1_4:72404412-72404431 None:intergenic 25.0%
! TTGTTAAGTGAACAAATAGA+GGG + chr1_4:72404688-72404707 Msa0183460:intron 25.0%
! GATATATTAACATAAACCTC+AGG + chr1_4:72404718-72404737 Msa0183460:intron 25.0%
! TATATTAACATAAACCTCAG+GGG + chr1_4:72404720-72404739 Msa0183460:intron 25.0%
! GTATAAGACATTGTAATCTT+TGG - chr1_4:72404778-72404797 None:intergenic 25.0%
! GATTACAATGTCTTATACTT+AGG + chr1_4:72404780-72404799 Msa0183460:intron 25.0%
! GAATAACACCATGAAATATT+CGG + chr1_4:72404881-72404900 Msa0183460:intron 25.0%
!! TTTTACCAGTTTTCAATCAA+AGG + chr1_4:72405017-72405036 Msa0183460:intron 25.0%
! AATTGTCTTTCCTTCATTAT+AGG + chr1_4:72405226-72405245 Msa0183460:intron 25.0%
! ATTTCAACAAGAAGATTGAA+CGG + chr1_4:72405387-72405406 Msa0183460:CDS 25.0%
!!! TATATTTTGCTATGCACATA+TGG + chr1_4:72405589-72405608 Msa0183460:three_prime_UTR 25.0%
! CGATTCAAATAAAAATATGC+AGG + chr1_4:72405755-72405774 Msa0183460:three_prime_UTR 25.0%
AATAGAACGTACAGATGTAA+AGG - chr1_4:72400481-72400500 None:intergenic 30.0%
TGTACGTTCTATTTCACATT+TGG + chr1_4:72400488-72400507 Msa0183460:intron 30.0%
ACATTTGGTTAATTCTGATG+AGG + chr1_4:72400503-72400522 Msa0183460:intron 30.0%
AAAAATAACAAACGCAGCAA+AGG - chr1_4:72401124-72401143 None:intergenic 30.0%
TATAGGTTTCTCTATTGCTT+TGG + chr1_4:72401358-72401377 Msa0183460:intron 30.0%
!! TGTGATTGGTGTTTCAATTT+TGG + chr1_4:72401448-72401467 Msa0183460:intron 30.0%
!! GTGATTGGTGTTTCAATTTT+GGG + chr1_4:72401449-72401468 Msa0183460:intron 30.0%
TTAGAGAGAAAAACAAGCAT+GGG - chr1_4:72401965-72401984 None:intergenic 30.0%
ATTAGAGAGAAAAACAAGCA+TGG - chr1_4:72401966-72401985 None:intergenic 30.0%
ATTCCTTACATTGATGTTGA+CGG + chr1_4:72402106-72402125 Msa0183460:intron 30.0%
AAACACCCTTGATTACAAAA+AGG + chr1_4:72402221-72402240 Msa0183460:intron 30.0%
AACACCCTTGATTACAAAAA+GGG + chr1_4:72402222-72402241 Msa0183460:intron 30.0%
! AGAACCCTTTTTGTAATCAA+GGG - chr1_4:72402229-72402248 None:intergenic 30.0%
ATAATTTGACAGTGGACATA+TGG - chr1_4:72402373-72402392 None:intergenic 30.0%
!! TTGTAAAAGGTATTAATGCC+TGG - chr1_4:72402527-72402546 None:intergenic 30.0%
AATTACAAGATTGGGAGAAA+GGG - chr1_4:72402557-72402576 None:intergenic 30.0%
TCAGTGATTTGAACATGTAT+GGG - chr1_4:72402884-72402903 None:intergenic 30.0%
ATCAGTGATTTGAACATGTA+TGG - chr1_4:72402885-72402904 None:intergenic 30.0%
AAACCAGTTTACAGTGATTA+AGG - chr1_4:72402917-72402936 None:intergenic 30.0%
GTAATATGGCAGCAAAAATT+CGG - chr1_4:72403021-72403040 None:intergenic 30.0%
! AATTTTTGCTGCCATATTAC+AGG + chr1_4:72403021-72403040 Msa0183460:intron 30.0%
! AAAAATAGCTCCAATTTTCG+AGG - chr1_4:72403099-72403118 None:intergenic 30.0%
AAATGGCTAATGAAAAGAAG+AGG + chr1_4:72403308-72403327 Msa0183460:CDS 30.0%
CAGAAGAGAAATACAAGAAA+TGG + chr1_4:72403467-72403486 Msa0183460:CDS 30.0%
TTGTATATCTCTGTGTATAC+AGG - chr1_4:72403595-72403614 None:intergenic 30.0%
!! TGTCATTTAAAAGTACCTCA+GGG - chr1_4:72403797-72403816 None:intergenic 30.0%
! GTTGAGTTTAAAACTAGAAG+GGG - chr1_4:72403826-72403845 None:intergenic 30.0%
! GTGTTGAGTTTAAAACTAGA+AGG - chr1_4:72403828-72403847 None:intergenic 30.0%
!!! ATTTTAAGATAAATTGGGGG+AGG - chr1_4:72403854-72403873 None:intergenic 30.0%
TAAAACACAAATTGTCGTCA+TGG - chr1_4:72403944-72403963 None:intergenic 30.0%
!!! CAATTTGTGTTTTAGAGTGT+CGG + chr1_4:72403950-72403969 Msa0183460:intron 30.0%
! GTGAAGATGCAAATTGATTT+GGG - chr1_4:72404019-72404038 None:intergenic 30.0%
AGTGAAGATGCAAATTGATT+TGG - chr1_4:72404020-72404039 None:intergenic 30.0%
GATCCAATAAAAACACATAC+TGG + chr1_4:72404381-72404400 Msa0183460:intron 30.0%
GAAATATAAATTGTGATCCC+TGG + chr1_4:72404453-72404472 Msa0183460:intron 30.0%
ATTATTAGCCCAACAAATCA+TGG - chr1_4:72404504-72404523 None:intergenic 30.0%
GTTGTTAAGTGAACAAATAG+AGG + chr1_4:72404687-72404706 Msa0183460:intron 30.0%
TGTTAAGTGAACAAATAGAG+GGG + chr1_4:72404689-72404708 Msa0183460:intron 30.0%
TACAATGTCTTATACTTAGG+TGG + chr1_4:72404783-72404802 Msa0183460:intron 30.0%
ACAATGTCTTATACTTAGGT+GGG + chr1_4:72404784-72404803 Msa0183460:intron 30.0%
!! GTTGATGAAGAAGTGTTTAT+AGG + chr1_4:72404856-72404875 Msa0183460:intron 30.0%
AATGTCCTTTGATTGAAAAC+TGG - chr1_4:72405025-72405044 None:intergenic 30.0%
CATCAATGGTTTATTGTATG+AGG + chr1_4:72405203-72405222 Msa0183460:intron 30.0%
TCTTGTTGAAATGCTCATTA+CGG - chr1_4:72405379-72405398 None:intergenic 30.0%
TTTCAACAAGAAGATTGAAC+GGG + chr1_4:72405388-72405407 Msa0183460:CDS 30.0%
ATTAAAAATAATCTCGAGCG+AGG + chr1_4:72405434-72405453 Msa0183460:CDS 30.0%
! TCTCATTGTTATTCTAATGC+TGG + chr1_4:72405504-72405523 Msa0183460:three_prime_UTR 30.0%
! CTCATTGTTATTCTAATGCT+GGG + chr1_4:72405505-72405524 Msa0183460:three_prime_UTR 30.0%
GAATGCTTGAAATAGACAGT+TGG + chr1_4:72400451-72400470 Msa0183460:intron 35.0%
! TAACATGGGATCTTTGTTTC+AGG + chr1_4:72400593-72400612 Msa0183460:intron 35.0%
GATTGCATGTACGTTGTTTA+TGG + chr1_4:72400615-72400634 Msa0183460:intron 35.0%
TGATTGAGAATGTTGCTGAT+TGG + chr1_4:72400649-72400668 Msa0183460:intron 35.0%
CAATAATACATACCACCGTT+CGG - chr1_4:72400713-72400732 None:intergenic 35.0%
ATCTTGAACCTACATGTAGA+AGG - chr1_4:72400848-72400867 None:intergenic 35.0%
CGACTTTCCAAAAAATTCAG+CGG - chr1_4:72400928-72400947 None:intergenic 35.0%
AGAATGAGATTTAGCAGATC+AGG - chr1_4:72401155-72401174 None:intergenic 35.0%
ATTCTTCAATCTCCACTTTC+AGG + chr1_4:72401170-72401189 Msa0183460:intron 35.0%
! ATCAAGTTGTTTCCTGAAAG+TGG - chr1_4:72401185-72401204 None:intergenic 35.0%
!!! GTGTTTCAATTTTGGGATGA+GGG + chr1_4:72401456-72401475 Msa0183460:intron 35.0%
!!! TGTTTCAATTTTGGGATGAG+GGG + chr1_4:72401457-72401476 Msa0183460:intron 35.0%
TGTAACGATTCAGTTTGGAT+CGG + chr1_4:72401506-72401525 Msa0183460:intron 35.0%
!! TATTTGAGTTGGATGACTGA+TGG - chr1_4:72401658-72401677 None:intergenic 35.0%
TAGAGAGAAAAACAAGCATG+GGG - chr1_4:72401964-72401983 None:intergenic 35.0%
! TACAGTTTTCTCTGTAGACA+AGG + chr1_4:72402061-72402080 Msa0183460:intron 35.0%
ACTCTATCAACATCAATGCA+AGG - chr1_4:72402182-72402201 None:intergenic 35.0%
! TGCATTGATGTTGATAGAGT+TGG + chr1_4:72402182-72402201 Msa0183460:intron 35.0%
! CAGAACCCTTTTTGTAATCA+AGG - chr1_4:72402230-72402249 None:intergenic 35.0%
!! TTACAAAAAGGGTTCTGAGT+TGG + chr1_4:72402233-72402252 Msa0183460:intron 35.0%
CAATTACAAGATTGGGAGAA+AGG - chr1_4:72402558-72402577 None:intergenic 35.0%
TCTCCTTAATCACTGTAAAC+TGG + chr1_4:72402911-72402930 Msa0183460:intron 35.0%
! CGCTTCTTTTTCCTGTAATA+TGG - chr1_4:72403035-72403054 None:intergenic 35.0%
TATTACAGGAAAAAGAAGCG+AGG + chr1_4:72403035-72403054 Msa0183460:intron 35.0%
TTGTCAAGAAACGAGAATTC+AGG - chr1_4:72403068-72403087 None:intergenic 35.0%
TAATGAAAAGAAGAGGATGG+AGG + chr1_4:72403315-72403334 Msa0183460:CDS 35.0%
GACGATAGGAAGAAAAAGAT+TGG + chr1_4:72403379-72403398 Msa0183460:CDS 35.0%
GGAAAACTTCTTGATGCAAA+TGG + chr1_4:72403400-72403419 Msa0183460:CDS 35.0%
!! AAATGGACTGGATATGACAA+AGG + chr1_4:72403417-72403436 Msa0183460:CDS 35.0%
ATATATGCTTGACACACAAG+AGG + chr1_4:72403441-72403460 Msa0183460:CDS 35.0%
GAAATACAAGAAATGGGAGA+AGG + chr1_4:72403474-72403493 Msa0183460:CDS 35.0%
TTTGTGAACCACATTGAAGT+TGG - chr1_4:72403643-72403662 None:intergenic 35.0%
ACTTGTAGAGTTTGTAAGCT+TGG + chr1_4:72403683-72403702 Msa0183460:intron 35.0%
!! GTGTCATTTAAAAGTACCTC+AGG - chr1_4:72403798-72403817 None:intergenic 35.0%
! ATCACGGTGTTAAGTTGTAA+GGG - chr1_4:72403889-72403908 None:intergenic 35.0%
! AATCACGGTGTTAAGTTGTA+AGG - chr1_4:72403890-72403909 None:intergenic 35.0%
!! TAGCTTTAACGGAACAATCA+CGG - chr1_4:72403905-72403924 None:intergenic 35.0%
GGGTTTACAGTTTATCAGTA+AGG + chr1_4:72404239-72404258 Msa0183460:intron 35.0%
CAAAGTTTCTCACAATTGGA+TGG - chr1_4:72404361-72404380 None:intergenic 35.0%
CATCCAATTGTGAGAAACTT+TGG + chr1_4:72404359-72404378 Msa0183460:intron 35.0%
GATCCAAAGTTTCTCACAAT+TGG - chr1_4:72404365-72404384 None:intergenic 35.0%
TAGATGTGAGTTTAACAGCA+AGG + chr1_4:72404658-72404677 Msa0183460:intron 35.0%
GTATTCATGCAAACACATGT+AGG - chr1_4:72404813-72404832 None:intergenic 35.0%
CATGTGTTTGCATGAATACT+TGG + chr1_4:72404814-72404833 Msa0183460:intron 35.0%
GATCTAGACCGAATATTTCA+TGG - chr1_4:72404892-72404911 None:intergenic 35.0%
! TGTGCCTTTAGAAGTTCTTA+CGG + chr1_4:72404970-72404989 Msa0183460:intron 35.0%
AGTTCCGTAAGAACTTCTAA+AGG - chr1_4:72404977-72404996 None:intergenic 35.0%
TTTGTACTTCTGCACATCAA+TGG + chr1_4:72405189-72405208 Msa0183460:intron 35.0%
!!! GTTTTTGGTGCCTATAATGA+AGG - chr1_4:72405239-72405258 None:intergenic 35.0%
!!! ATCTTATCCTCTGAGGTTTT+TGG - chr1_4:72405254-72405273 None:intergenic 35.0%
TGGTACAAGAACTTAAGGAT+AGG + chr1_4:72405282-72405301 Msa0183460:CDS 35.0%
GGTACAAGAACTTAAGGATA+GGG + chr1_4:72405283-72405302 Msa0183460:CDS 35.0%
CTCCAATGTGTATTTACCAA+AGG - chr1_4:72405414-72405433 None:intergenic 35.0%
CTAATGCTGGGAAGTTTAAA+TGG + chr1_4:72405517-72405536 Msa0183460:three_prime_UTR 35.0%
! TTGAGTTTGAAGCATTTCCT+TGG + chr1_4:72405702-72405721 Msa0183460:three_prime_UTR 35.0%
GATTCAAGTCATTTGCATCT+AGG - chr1_4:72405730-72405749 None:intergenic 35.0%
! TTGAGAATGTTGCTGATTGG+TGG + chr1_4:72400652-72400671 Msa0183460:intron 40.0%
CATAAAAGGGTCATTCCGAA+CGG + chr1_4:72400695-72400714 Msa0183460:intron 40.0%
!!! ATTTTTTGGAAAGTCGTGCG+AGG + chr1_4:72400932-72400951 Msa0183460:intron 40.0%
GCAAGCTTAGAAACTAGGTT+AGG - chr1_4:72401030-72401049 None:intergenic 40.0%
!!! GGTGTTTCAATTTTGGGATG+AGG + chr1_4:72401455-72401474 Msa0183460:intron 40.0%
TTTCTCTGTAGACAAGGTCA+AGG + chr1_4:72402067-72402086 Msa0183460:intron 40.0%
ACTCCGTCAACATCAATGTA+AGG - chr1_4:72402112-72402131 None:intergenic 40.0%
TACATTGATGTTGACGGAGT+TGG + chr1_4:72402112-72402131 Msa0183460:intron 40.0%
!! TAGAGTTGGTAGTAACACAC+TGG + chr1_4:72402196-72402215 Msa0183460:intron 40.0%
!! AGAGTTGGTAGTAACACACT+GGG + chr1_4:72402197-72402216 Msa0183460:intron 40.0%
GTATCTTTGTGATCGACCAA+AGG - chr1_4:72402308-72402327 None:intergenic 40.0%
!! AAAGGGAGGCTTGTTGTAAA+AGG - chr1_4:72402540-72402559 None:intergenic 40.0%
CTCGTTTCTTGACAATGTTC+TGG + chr1_4:72403073-72403092 Msa0183460:intron 40.0%
AATGTTCTGGCCTCGAAAAT+TGG + chr1_4:72403086-72403105 Msa0183460:intron 40.0%
!!! AGATCCTTGCTTTGTTTTGC+TGG + chr1_4:72403254-72403273 Msa0183460:intron 40.0%
GGCTAATGAAAAGAAGAGGA+TGG + chr1_4:72403312-72403331 Msa0183460:CDS 40.0%
ACTTCTTGATGCAAATGGAC+TGG + chr1_4:72403405-72403424 Msa0183460:CDS 40.0%
TTTCTGTGCCAACTTCAATG+TGG + chr1_4:72403632-72403651 Msa0183460:intron 40.0%
GTACTCGATATCACAAACTC+TGG - chr1_4:72403716-72403735 None:intergenic 40.0%
!! AATTACACTGACTTTCCCTG+AGG + chr1_4:72403779-72403798 Msa0183460:intron 40.0%
! TCACGGTGTTAAGTTGTAAG+GGG - chr1_4:72403888-72403907 None:intergenic 40.0%
AAAGAAGAGCCACCAGAAAA+GGG - chr1_4:72404071-72404090 None:intergenic 40.0%
AAAAGAAGAGCCACCAGAAA+AGG - chr1_4:72404072-72404091 None:intergenic 40.0%
AAATCATGGACGCATGGAAA+AGG - chr1_4:72404490-72404509 None:intergenic 40.0%
TAAGTGAACAAATAGAGGGG+AGG + chr1_4:72404692-72404711 Msa0183460:intron 40.0%
ATTAACATAAACCTCAGGGG+AGG + chr1_4:72404723-72404742 Msa0183460:intron 40.0%
AAAGCGAACCAAGAACATTG+AGG + chr1_4:72405060-72405079 Msa0183460:CDS 40.0%
TACATCGACCTCAATGTTCT+TGG - chr1_4:72405071-72405090 None:intergenic 40.0%
TTCAAGTCTCCAGTATGGAA+AGG + chr1_4:72405141-72405160 Msa0183460:CDS 40.0%
GACAGTATACCTTTCCATAC+TGG - chr1_4:72405153-72405172 None:intergenic 40.0%
AGAGGATAAGATTGACAGGA+TGG + chr1_4:72405262-72405281 Msa0183460:CDS 40.0%
CAGGATGGTACAAGAACTTA+AGG + chr1_4:72405277-72405296 Msa0183460:CDS 40.0%
GGCCTTTGGTAAATACACAT+TGG + chr1_4:72405409-72405428 Msa0183460:CDS 40.0%
ATGCTGGGAAGTTTAAATGG+TGG + chr1_4:72405520-72405539 Msa0183460:three_prime_UTR 40.0%
!! TATGCACATATGGAGCATTG+TGG + chr1_4:72405599-72405618 Msa0183460:three_prime_UTR 40.0%
TCATTTGCATCTAGGTACCA+AGG - chr1_4:72405722-72405741 None:intergenic 40.0%
TTGCTTGTGCGTGCCATAAA+AGG + chr1_4:72400681-72400700 Msa0183460:intron 45.0%
TGCTTGTGCGTGCCATAAAA+GGG + chr1_4:72400682-72400701 Msa0183460:intron 45.0%
! CGTTCGGAATGACCCTTTTA+TGG - chr1_4:72400697-72400716 None:intergenic 45.0%
! CAAGTGCTGCAAACATGTGT+TGG + chr1_4:72400733-72400752 Msa0183460:intron 45.0%
CTGCAAACATGTGTTGGAAG+TGG + chr1_4:72400739-72400758 Msa0183460:intron 45.0%
GATCTCTCTTCTACTGACCT+CGG - chr1_4:72400767-72400786 None:intergenic 45.0%
!!! CGTGTTGCCGCTGAATTTTT+TGG + chr1_4:72400918-72400937 Msa0183460:intron 45.0%
AGTCGTGCGAGGATATCATT+CGG + chr1_4:72400943-72400962 Msa0183460:intron 45.0%
GAGGATATCATTCGGGAGTT+TGG + chr1_4:72400951-72400970 Msa0183460:intron 45.0%
AAGCGATCCAATTGTTGAGC+AGG + chr1_4:72401424-72401443 Msa0183460:intron 45.0%
AGCGATCCAATTGTTGAGCA+GGG + chr1_4:72401425-72401444 Msa0183460:intron 45.0%
ATCACACCCTGCTCAACAAT+TGG - chr1_4:72401434-72401453 None:intergenic 45.0%
ATTGTTGAGCAGGGTGTGAT+TGG + chr1_4:72401434-72401453 Msa0183460:intron 45.0%
AGGGGACATGTTAGATGACT+AGG + chr1_4:72401475-72401494 Msa0183460:intron 45.0%
GGGGACATGTTAGATGACTA+GGG + chr1_4:72401476-72401495 Msa0183460:intron 45.0%
! GGATGACTGATGGATGAACA+TGG - chr1_4:72401648-72401667 None:intergenic 45.0%
ATTGATGTTGACGGAGTTGG+TGG + chr1_4:72402115-72402134 Msa0183460:intron 45.0%
GGTAACACGCTTGGAAACAA+AGG + chr1_4:72402136-72402155 Msa0183460:intron 45.0%
ACGCTTGGAAACAAAGGCAA+AGG + chr1_4:72402142-72402161 Msa0183460:intron 45.0%
!! GAGTTGGTAGTAACACACTG+GGG + chr1_4:72402198-72402217 Msa0183460:intron 45.0%
!! TGGCTTGAGTTGGCTAATCA+AGG - chr1_4:72402353-72402372 None:intergenic 45.0%
AGTGGACATATGGCTTGAGT+TGG - chr1_4:72402363-72402382 None:intergenic 45.0%
TACAAGATTGGGAGAAAGGG+AGG - chr1_4:72402554-72402573 None:intergenic 45.0%
!!! TGTGTTTTAGAGTGTCGGTG+TGG + chr1_4:72403955-72403974 Msa0183460:intron 45.0%
!! TTAGAGTGTCGGTGTGGATT+TGG + chr1_4:72403961-72403980 Msa0183460:intron 45.0%
AAGAAGAGCCACCAGAAAAG+GGG - chr1_4:72404070-72404089 None:intergenic 45.0%
AAAAGGCCACAACAAGTCCA+GGG - chr1_4:72404473-72404492 None:intergenic 45.0%
! TCCATGCGTCCATGATTTGT+TGG + chr1_4:72404492-72404511 Msa0183460:intron 45.0%
!! CCATGCGTCCATGATTTGTT+GGG + chr1_4:72404493-72404512 Msa0183460:intron 45.0%
ATTTACACTAACCTCCCCTG+AGG - chr1_4:72404737-72404756 None:intergenic 45.0%
! GAAGCATCACGGTAGAATTC+TGG - chr1_4:72405124-72405143 None:intergenic 45.0%
! ACTGGAGACTTGAAGCATCA+CGG - chr1_4:72405135-72405154 None:intergenic 45.0%
GATGCTTCAAGTCTCCAGTA+TGG + chr1_4:72405136-72405155 Msa0183460:CDS 45.0%
ATAGGCACCAAAAACCTCAG+AGG + chr1_4:72405244-72405263 Msa0183460:intron 45.0%
CCTGTCAATCTTATCCTCTG+AGG - chr1_4:72405261-72405280 None:intergenic 45.0%
CCTCAGAGGATAAGATTGAC+AGG + chr1_4:72405258-72405277 Msa0183460:CDS 45.0%
! AGAAACGTAGGGCATTTAGC+AGG + chr1_4:72405309-72405328 Msa0183460:CDS 45.0%
AAGAAGATTGAACGGGCCTT+TGG + chr1_4:72405395-72405414 Msa0183460:CDS 45.0%
ACTGCAGAAGCAAATCAGTC+CGG - chr1_4:72405470-72405489 None:intergenic 45.0%
!! AAATGGTGGATTGCGTTCTC+TGG + chr1_4:72405534-72405553 Msa0183460:three_prime_UTR 45.0%
AAAAGGGTCATTCCGAACGG+TGG + chr1_4:72400698-72400717 Msa0183460:intron 50.0%
ATGTGTTGGAAGTGGATCCG+AGG + chr1_4:72400747-72400766 Msa0183460:intron 50.0%
GTCGTGCGAGGATATCATTC+GGG + chr1_4:72400944-72400963 Msa0183460:intron 50.0%
AGGCGGCAAGCTTAGAAACT+AGG - chr1_4:72401035-72401054 None:intergenic 50.0%
AACAACTTGATGCAGCGTCG+AGG + chr1_4:72401194-72401213 Msa0183460:intron 50.0%
ATTCATGCCTCAACCAGCAG+TGG + chr1_4:72401312-72401331 Msa0183460:intron 50.0%
TTCATGCCTCAACCAGCAGT+GGG + chr1_4:72401313-72401332 Msa0183460:intron 50.0%
TGTGTGTGTGTGTGTGTGTG+TGG - chr1_4:72401689-72401708 None:intergenic 50.0%
CTGTAGACAAGGTCAAGGCA+AGG + chr1_4:72402072-72402091 Msa0183460:intron 50.0%
CACATGCCACATGCTTCCTT+TGG + chr1_4:72402289-72402308 Msa0183460:intron 50.0%
! GATCGACCAAAGGAAGCATG+TGG - chr1_4:72402298-72402317 None:intergenic 50.0%
! TGCTGACTACATGCTTCTCC+AGG + chr1_4:72402506-72402525 Msa0183460:intron 50.0%
GCTGCCAGCAAAACAAAGCA+AGG - chr1_4:72403261-72403280 None:intergenic 50.0%
GAAACACCCCTAGACTCTGT+TGG - chr1_4:72403343-72403362 None:intergenic 50.0%
AGCAGAAGTGGCTTGACGAT+AGG + chr1_4:72403365-72403384 Msa0183460:CDS 50.0%
GAGAAGGATCCTGCTCCATT+CGG + chr1_4:72403490-72403509 Msa0183460:CDS 50.0%
AACATACCATCCCAGCCGAA+TGG - chr1_4:72403508-72403527 None:intergenic 50.0%
TCACTCTCCCACTCTATCTC+TGG + chr1_4:72404035-72404054 Msa0183460:intron 50.0%
!! TGTGATCCCTGGACTTGTTG+TGG + chr1_4:72404464-72404483 Msa0183460:intron 50.0%
GAAAAGGCCACAACAAGTCC+AGG - chr1_4:72404474-72404493 None:intergenic 50.0%
CCCAACAAATCATGGACGCA+TGG - chr1_4:72404496-72404515 None:intergenic 50.0%
AGGATAGGGACGAGAAACGT+AGG + chr1_4:72405297-72405316 Msa0183460:CDS 50.0%
GGATAGGGACGAGAAACGTA+GGG + chr1_4:72405298-72405317 Msa0183460:CDS 50.0%
!! GGACTGATTTGCTTCTGCAG+TGG + chr1_4:72405469-72405488 Msa0183460:exon 50.0%
! ACTTGATGCAGCGTCGAGGA+TGG + chr1_4:72401198-72401217 Msa0183460:intron 55.0%
GGAATTGACATGCCCACTGC+TGG - chr1_4:72401328-72401347 None:intergenic 55.0%
!! GGAGTTGGTGGTAACACGCT+TGG + chr1_4:72402127-72402146 Msa0183460:intron 55.0%
TGGAGGCTCCAACAGAGTCT+AGG + chr1_4:72403332-72403351 Msa0183460:CDS 55.0%
GGAGGCTCCAACAGAGTCTA+GGG + chr1_4:72403333-72403352 Msa0183460:CDS 55.0%
GAGGCTCCAACAGAGTCTAG+GGG + chr1_4:72403334-72403353 Msa0183460:CDS 55.0%
! GGGGTGTTTCGAAGCAGAAG+TGG + chr1_4:72403353-72403372 Msa0183460:CDS 55.0%
! GACATGCCCACTGCTGGTTG+AGG - chr1_4:72401322-72401341 None:intergenic 60.0%
AGGATCCTGCTCCATTCGGC+TGG + chr1_4:72403494-72403513 Msa0183460:CDS 60.0%
GGATCCTGCTCCATTCGGCT+GGG + chr1_4:72403495-72403514 Msa0183460:CDS 60.0%
TCCCACTCTATCTCTGGCGC+CGG + chr1_4:72404041-72404060 Msa0183460:intron 60.0%
GCCACCAGAAAAGGGGTTGC+CGG - chr1_4:72404063-72404082 None:intergenic 60.0%
CGAGCGAGGAACTGCATTGC+CGG + chr1_4:72405448-72405467 Msa0183460:CDS 60.0%
CCATCCCAGCCGAATGGAGC+AGG - chr1_4:72403502-72403521 None:intergenic 65.0%
CCTGCTCCATTCGGCTGGGA+TGG + chr1_4:72403499-72403518 Msa0183460:CDS 65.0%
GCCGGCGCCAGAGATAGAGT+GGG - chr1_4:72404045-72404064 None:intergenic 65.0%
TGCCGGCGCCAGAGATAGAG+TGG - chr1_4:72404046-72404065 None:intergenic 65.0%
! GCCGGCAACCCCTTTTCTGG+TGG + chr1_4:72404059-72404078 Msa0183460:intron 65.0%
!!! GGCGCCGGCAACCCCTTTTC+TGG + chr1_4:72404056-72404075 Msa0183460:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 72400416 72405810 72400416 ID=Msa0183460;Name=Msa0183460
chr1_4 mRNA 72400416 72405810 72400416 ID=Msa0183460-mRNA-1;Parent=Msa0183460;Name=Msa0183460-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0.66|0.5|0.75|1|1|4|335|203
chr1_4 exon 72400416 72400421 72400416 ID=Msa0183460-mRNA-1:exon:24475;Parent=Msa0183460-mRNA-1
chr1_4 exon 72403280 72403520 72403280 ID=Msa0183460-mRNA-1:exon:24476;Parent=Msa0183460-mRNA-1
chr1_4 exon 72405026 72405162 72405026 ID=Msa0183460-mRNA-1:exon:24477;Parent=Msa0183460-mRNA-1
chr1_4 exon 72405248 72405810 72405248 ID=Msa0183460-mRNA-1:exon:24478;Parent=Msa0183460-mRNA-1
chr1_4 CDS 72400416 72400421 72400416 ID=Msa0183460-mRNA-1:cds;Parent=Msa0183460-mRNA-1
chr1_4 CDS 72403280 72403520 72403280 ID=Msa0183460-mRNA-1:cds;Parent=Msa0183460-mRNA-1
chr1_4 CDS 72405026 72405162 72405026 ID=Msa0183460-mRNA-1:cds;Parent=Msa0183460-mRNA-1
chr1_4 CDS 72405248 72405475 72405248 ID=Msa0183460-mRNA-1:cds;Parent=Msa0183460-mRNA-1
chr1_4 three_prime_UTR 72405476 72405810 72405476 ID=Msa0183460-mRNA-1:three_prime_utr;Parent=Msa0183460-mRNA-1
Gene Sequence

>Msa0183460

ATGAAGCAAGAAGCAAAAAAACGTAATCAAATTGAAATGGCTAATGAAAAGAAGAGGATGGAGGCTCCAACAGAGTCTAGGGGTGTTTCGAAGCAGAAGTGGCTTGACGATAGGAAGAAAAAGATTGGAAAACTTCTTGATGCAAATGGACTGGATATGACAAAGGCATATATGCTTGACACACAAGAGGCTGCAGAAGAGAAATACAAGAAATGGGAGAAGGATCCTGCTCCATTCGGCTGGGATGTTTTCAATCAAAGGACATTATACAATGCATACAAAAAGCGAACCAAGAACATTGAGGTCGATGTAGAAGAATACAATAGAATGAAAGAAGCTGATCCAGAATTCTACCGTGATGCTTCAAGTCTCCAGTATGGAAAGGCACCAAAAACCTCAGAGGATAAGATTGACAGGATGGTACAAGAACTTAAGGATAGGGACGAGAAACGTAGGGCATTTAGCAGGAGAAGAACATTTCGTGAAGAGAAAGATGTTGACTCAATCAATGACCGTAATGAGCATTTCAACAAGAAGATTGAACGGGCCTTTGGTAAATACACATTGGAGATTAAAAATAATCTCGAGCGAGGAACTGCATTGCCGGACTGA

Protein sequence

>Msa0183460

MKQEAKKRNQIEMANEKKRMEAPTESRGVSKQKWLDDRKKKIGKLLDANGLDMTKAYMLDTQEAAEEKYKKWEKDPAPFGWDVFNQRTLYNAYKKRTKNIEVDVEEYNRMKEADPEFYRDASSLQYGKAPKTSEDKIDRMVQELKDRDEKRRAFSRRRTFREEKDVDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD*