Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0402210 | XP_013459414.1 | 91.696 | 566 | 39 | 3 | 1 | 563 | 1 | 561 | 0.0 | 1073 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0402210 | sp|Q9LKL2|APRR1_ARATH | 48.460 | 617 | 234 | 19 | 6 | 561 | 1 | 594 | 2.21e-163 | 481 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0402210 | A0A072V5J5 | 91.696 | 566 | 39 | 3 | 1 | 563 | 1 | 561 | 0.0 | 1073 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0001810 | Msa0402210 | 0.835628 | 1.502104e-56 | -8.615850e-47 |
Msa0015930 | Msa0402210 | 0.866045 | 3.798566e-65 | -8.615850e-47 |
Msa0023010 | Msa0402210 | 0.809047 | 2.295382e-50 | -8.615850e-47 |
Msa0023040 | Msa0402210 | 0.832335 | 1.002240e-55 | -8.615850e-47 |
Msa0023050 | Msa0402210 | 0.820921 | 5.313564e-53 | -8.615850e-47 |
Msa0026680 | Msa0402210 | 0.854175 | 1.466332e-61 | -8.615850e-47 |
Msa0118790 | Msa0402210 | 0.800398 | 1.468313e-48 | -8.615850e-47 |
Msa0140630 | Msa0402210 | 0.871708 | 5.560912e-67 | -8.615850e-47 |
Msa0145080 | Msa0402210 | 0.860288 | 2.293211e-63 | -8.615850e-47 |
Msa0145160 | Msa0402210 | 0.801753 | 7.760609e-49 | -8.615850e-47 |
Msa0156370 | Msa0402210 | 0.851417 | 8.994522e-61 | -8.615850e-47 |
Msa0162120 | Msa0402210 | 0.801646 | 8.162047e-49 | -8.615850e-47 |
Msa0381500 | Msa0402210 | 0.884061 | 2.643535e-71 | -8.615850e-47 |
Msa0387830 | Msa0402210 | 0.844380 | 7.836169e-59 | -8.615850e-47 |
Msa0402210 | Msa0420790 | 0.819654 | 1.036568e-52 | -8.615850e-47 |
Msa0402210 | Msa0435980 | -0.853019 | 3.149894e-61 | -8.615850e-47 |
Msa0402210 | Msa0438470 | 0.815313 | 9.853462e-52 | -8.615850e-47 |
Msa0402210 | Msa0463250 | 0.805038 | 1.619005e-49 | -8.615850e-47 |
Msa0402210 | Msa0469560 | -0.854141 | 1.499755e-61 | -8.615850e-47 |
Msa0402210 | Msa0483770 | 0.989787 | 1.209590e-179 | -8.615850e-47 |
Msa0402210 | Msa0513990 | 0.801734 | 7.831157e-49 | -8.615850e-47 |
Msa0402210 | Msa0515270 | -0.843842 | 1.092533e-58 | -8.615850e-47 |
Msa0402210 | Msa0519950 | 0.865825 | 4.457472e-65 | -8.615850e-47 |
Msa0402210 | Msa0527690 | -0.854342 | 1.312234e-61 | -8.615850e-47 |
Msa0402210 | Msa0550120 | 0.876679 | 1.152738e-68 | -8.615850e-47 |
Msa0402210 | Msa0550130 | 0.811691 | 6.168002e-51 | -8.615850e-47 |
Msa0402210 | Msa0550150 | 0.879423 | 1.261740e-69 | -8.615850e-47 |
Msa0402210 | Msa0574910 | 0.835627 | 1.502833e-56 | -8.615850e-47 |
Msa0402210 | Msa0578470 | 0.804294 | 2.314424e-49 | -8.615850e-47 |
Msa0402210 | Msa0604010 | 0.844260 | 8.437875e-59 | -8.615850e-47 |
Msa0402210 | Msa0605630 | 0.887308 | 1.599753e-72 | -8.615850e-47 |
Msa0402210 | Msa0605640 | 0.829000 | 6.573511e-55 | -8.615850e-47 |
Msa0402210 | Msa0605650 | 0.854934 | 8.839468e-62 | -8.615850e-47 |
Msa0402210 | Msa0609660 | -0.844743 | 6.256626e-59 | -8.615850e-47 |
Msa0402210 | Msa0620890 | 0.803620 | 3.196394e-49 | -8.615850e-47 |
Msa0402210 | Msa0646580 | 0.884242 | 2.267577e-71 | -8.615850e-47 |
Msa0402210 | Msa0650500 | -0.841930 | 3.523863e-58 | -8.615850e-47 |
Msa0402210 | Msa0686210 | 0.837018 | 6.658747e-57 | -8.615850e-47 |
Msa0402210 | Msa0686220 | 0.846936 | 1.587682e-59 | -8.615850e-47 |
Msa0402210 | Msa0686230 | 0.814897 | 1.219390e-51 | -8.615850e-47 |
Msa0402210 | Msa0692240 | -0.848855 | 4.697551e-60 | -8.615850e-47 |
Msa0402210 | Msa0708930 | 0.954238 | 4.639261e-112 | -8.615850e-47 |
Msa0402210 | Msa0717230 | -0.812762 | 3.601889e-51 | -8.615850e-47 |
Msa0402210 | Msa0738380 | 0.845658 | 3.539600e-59 | -8.615850e-47 |
Msa0402210 | Msa0741230 | 0.814381 | 1.585687e-51 | -8.615850e-47 |
Msa0402210 | Msa0758300 | -0.824940 | 6.148105e-54 | -8.615850e-47 |
Msa0402210 | Msa0764680 | -0.851582 | 8.081800e-61 | -8.615850e-47 |
Msa0402210 | Msa0799680 | -0.819430 | 1.166266e-52 | -8.615850e-47 |
Msa0402210 | Msa0817730 | 0.842589 | 2.358055e-58 | -8.615850e-47 |
Msa0402210 | Msa0818750 | 0.815333 | 9.756936e-52 | -8.615850e-47 |
Msa0402210 | Msa0837930 | -0.840831 | 6.859409e-58 | -8.615850e-47 |
Msa0402210 | Msa0844220 | -0.827264 | 1.722073e-54 | -8.615850e-47 |
Msa0402210 | Msa0858180 | 0.838037 | 3.648209e-57 | -8.615850e-47 |
Msa0402210 | Msa0861860 | 0.822532 | 2.253174e-53 | -8.615850e-47 |
Msa0402210 | Msa0867720 | 0.833621 | 4.801444e-56 | -8.615850e-47 |
Msa0402210 | Msa0867730 | 0.877064 | 8.479870e-69 | -8.615850e-47 |
Msa0402210 | Msa0930760 | 0.829557 | 4.816637e-55 | -8.615850e-47 |
Msa0402210 | Msa0968610 | 0.886452 | 3.378151e-72 | -8.615850e-47 |
Msa0402210 | Msa0982130 | 0.836816 | 7.496178e-57 | -8.615850e-47 |
Msa0402210 | Msa1113700 | -0.842337 | 2.750240e-58 | -8.615850e-47 |
Msa0402210 | Msa1120130 | 0.806977 | 6.330357e-50 | -8.615850e-47 |
Msa0402210 | Msa1130820 | -0.875463 | 3.021516e-68 | -8.615850e-47 |
Msa0402210 | Msa1157500 | 0.810076 | 1.379717e-50 | -8.615850e-47 |
Msa0402210 | Msa1172610 | -0.850154 | 2.039820e-60 | -8.615850e-47 |
Msa0402210 | Msa1212190 | 0.947663 | 4.336944e-106 | -8.615850e-47 |
Msa0402210 | Msa1212270 | 0.942138 | 1.221364e-101 | -8.615850e-47 |
Msa0402210 | Msa1259910 | 0.943499 | 1.077353e-102 | -8.615850e-47 |
Msa0402210 | Msa1353750 | 0.854002 | 1.645152e-61 | -8.615850e-47 |
Msa0402210 | Msa1384360 | -0.852851 | 3.518673e-61 | -8.615850e-47 |
Msa0402210 | Msa1406670 | -0.870523 | 1.368298e-66 | -8.615850e-47 |
Msa0402210 | Msa1448870 | -0.873269 | 1.676110e-67 | -8.615850e-47 |
Msa0339040 | Msa0402210 | 0.803179 | 3.944534e-49 | -8.615850e-47 |
Msa0355140 | Msa0402210 | 0.989491 | 2.389558e-178 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0402210 | MtrunA17_Chr3g0091641 | 91.696 | 566 | 39 | 3 | 1 | 563 | 1 | 561 | 0.0 | 1073 |
Msa0402210 | MtrunA17_Chr4g0061021 | 65.104 | 576 | 145 | 8 | 10 | 559 | 19 | 564 | 0.0 | 732 |
Msa0402210 | MtrunA17_Chr3g0127941 | 30.000 | 300 | 177 | 7 | 18 | 316 | 50 | 317 | 9.66e-31 | 127 |
Msa0402210 | MtrunA17_Chr3g0127941 | 68.889 | 45 | 14 | 0 | 500 | 544 | 630 | 674 | 1.04e-12 | 70.9 |
Msa0402210 | MtrunA17_Chr4g0030271 | 34.450 | 209 | 127 | 3 | 18 | 220 | 83 | 287 | 9.12e-29 | 121 |
Msa0402210 | MtrunA17_Chr4g0030271 | 68.750 | 48 | 15 | 0 | 496 | 543 | 717 | 764 | 3.20e-15 | 79.0 |
Msa0402210 | MtrunA17_Chr8g0345901 | 35.838 | 173 | 94 | 1 | 18 | 190 | 30 | 185 | 1.09e-27 | 117 |
Msa0402210 | MtrunA17_Chr8g0345901 | 66.667 | 45 | 15 | 0 | 499 | 543 | 583 | 627 | 9.52e-12 | 67.8 |
Msa0402210 | MtrunA17_Chr7g0276361 | 42.188 | 128 | 74 | 0 | 18 | 145 | 8 | 135 | 3.49e-27 | 115 |
Msa0402210 | MtrunA17_Chr7g0276361 | 60.000 | 50 | 20 | 0 | 496 | 545 | 537 | 586 | 2.72e-13 | 72.8 |
Msa0402210 | MtrunA17_Chr1g0181811 | 31.556 | 225 | 136 | 3 | 18 | 229 | 79 | 298 | 2.44e-26 | 114 |
Msa0402210 | MtrunA17_Chr1g0181811 | 61.404 | 57 | 19 | 1 | 487 | 540 | 678 | 734 | 1.07e-12 | 70.9 |
Msa0402210 | MtrunA17_Chr1g0161431 | 30.732 | 205 | 126 | 4 | 24 | 228 | 15 | 203 | 1.47e-21 | 99.0 |
Msa0402210 | MtrunA17_Chr3g0091661 | 65.714 | 70 | 20 | 2 | 37 | 106 | 27 | 92 | 2.55e-21 | 89.0 |
Msa0402210 | MtrunA17_Chr3g0123131 | 34.959 | 123 | 77 | 1 | 24 | 146 | 17 | 136 | 5.63e-20 | 93.6 |
Msa0402210 | MtrunA17_Chr2g0294911 | 36.290 | 124 | 76 | 1 | 24 | 147 | 33 | 153 | 1.81e-19 | 92.0 |
Msa0402210 | MtrunA17_Chr3g0137101 | 34.677 | 124 | 78 | 1 | 24 | 147 | 12 | 132 | 3.70e-19 | 91.3 |
Msa0402210 | MtrunA17_Chr4g0067981 | 34.677 | 124 | 78 | 1 | 24 | 147 | 35 | 155 | 4.52e-19 | 91.3 |
Msa0402210 | MtrunA17_Chr2g0304841 | 32.836 | 134 | 85 | 2 | 16 | 147 | 12 | 142 | 1.36e-18 | 89.7 |
Msa0402210 | MtrunA17_Chr8g0376881 | 34.146 | 123 | 78 | 1 | 24 | 146 | 29 | 148 | 3.15e-18 | 88.2 |
Msa0402210 | MtrunA17_Chr1g0149841 | 33.065 | 124 | 80 | 1 | 24 | 147 | 9 | 129 | 5.06e-18 | 87.0 |
Msa0402210 | MtrunA17_Chr7g0275401 | 30.968 | 155 | 100 | 2 | 21 | 171 | 6 | 157 | 8.05e-18 | 84.3 |
Msa0402210 | MtrunA17_Chr4g0074411 | 33.333 | 123 | 79 | 1 | 24 | 146 | 22 | 141 | 8.41e-18 | 87.0 |
Msa0402210 | MtrunA17_Chr3g0134481 | 35.338 | 133 | 81 | 2 | 16 | 146 | 2 | 131 | 1.08e-17 | 81.6 |
Msa0402210 | MtrunA17_Chr7g0275891 | 31.646 | 158 | 100 | 3 | 24 | 176 | 9 | 163 | 1.53e-17 | 84.3 |
Msa0402210 | MtrunA17_Chr4g0074401 | 32.520 | 123 | 80 | 1 | 24 | 146 | 21 | 140 | 2.24e-17 | 85.5 |
Msa0402210 | MtrunA17_Chr1g0149851 | 33.065 | 124 | 80 | 1 | 24 | 147 | 9 | 129 | 2.27e-17 | 85.5 |
Msa0402210 | MtrunA17_Chr4g0049741 | 55.357 | 56 | 25 | 0 | 486 | 541 | 94 | 149 | 1.68e-12 | 68.9 |
Msa0402210 | MtrunA17_Chr3g0134461 | 32.258 | 124 | 82 | 1 | 24 | 147 | 12 | 133 | 1.71e-12 | 66.6 |
Msa0402210 | MtrunA17_Chr3g0132751 | 57.143 | 49 | 21 | 0 | 492 | 540 | 123 | 171 | 1.35e-11 | 66.2 |
Msa0402210 | MtrunA17_Chr4g0074421 | 36.364 | 77 | 46 | 1 | 70 | 146 | 2 | 75 | 1.77e-11 | 63.5 |
Msa0402210 | MtrunA17_Chr5g0400241 | 29.134 | 127 | 84 | 3 | 17 | 142 | 10 | 131 | 3.03e-11 | 66.2 |
Msa0402210 | MtrunA17_Chr7g0256551 | 26.174 | 149 | 90 | 3 | 17 | 146 | 2 | 149 | 4.98e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0402210 | AT5G61380.1 | 48.460 | 617 | 234 | 19 | 6 | 561 | 1 | 594 | 2.25e-164 | 481 |
Msa0402210 | AT2G46790.3 | 42.188 | 128 | 74 | 0 | 18 | 145 | 31 | 158 | 7.74e-32 | 128 |
Msa0402210 | AT2G46790.1 | 42.188 | 128 | 74 | 0 | 18 | 145 | 31 | 158 | 1.28e-31 | 128 |
Msa0402210 | AT2G46790.1 | 69.565 | 46 | 14 | 0 | 499 | 544 | 416 | 461 | 2.91e-14 | 75.9 |
Msa0402210 | AT5G24470.1 | 45.113 | 133 | 73 | 0 | 18 | 150 | 44 | 176 | 4.03e-31 | 127 |
Msa0402210 | AT5G24470.1 | 55.357 | 56 | 25 | 0 | 488 | 543 | 497 | 552 | 1.49e-12 | 70.9 |
Msa0402210 | AT5G60100.7 | 45.082 | 122 | 67 | 0 | 24 | 145 | 64 | 185 | 2.82e-28 | 117 |
Msa0402210 | AT5G60100.6 | 45.082 | 122 | 67 | 0 | 24 | 145 | 64 | 185 | 2.82e-28 | 117 |
Msa0402210 | AT5G60100.4 | 45.082 | 122 | 67 | 0 | 24 | 145 | 64 | 185 | 2.82e-28 | 117 |
Msa0402210 | AT5G60100.5 | 45.082 | 122 | 67 | 0 | 24 | 145 | 64 | 185 | 5.49e-28 | 117 |
Msa0402210 | AT5G60100.5 | 68.182 | 44 | 14 | 0 | 499 | 542 | 441 | 484 | 7.98e-13 | 71.2 |
Msa0402210 | AT5G60100.3 | 45.082 | 122 | 67 | 0 | 24 | 145 | 64 | 185 | 5.49e-28 | 117 |
Msa0402210 | AT5G60100.3 | 68.182 | 44 | 14 | 0 | 499 | 542 | 441 | 484 | 7.98e-13 | 71.2 |
Msa0402210 | AT5G60100.1 | 45.082 | 122 | 67 | 0 | 24 | 145 | 64 | 185 | 5.49e-28 | 117 |
Msa0402210 | AT5G60100.1 | 68.182 | 44 | 14 | 0 | 499 | 542 | 441 | 484 | 7.98e-13 | 71.2 |
Msa0402210 | AT5G60100.2 | 45.082 | 122 | 67 | 0 | 24 | 145 | 64 | 185 | 1.61e-27 | 117 |
Msa0402210 | AT5G60100.2 | 68.182 | 44 | 14 | 0 | 499 | 542 | 468 | 511 | 9.87e-13 | 71.2 |
Msa0402210 | AT5G02810.1 | 41.406 | 128 | 75 | 0 | 18 | 145 | 72 | 199 | 6.36e-25 | 110 |
Msa0402210 | AT5G02810.1 | 63.793 | 58 | 21 | 0 | 492 | 549 | 661 | 718 | 1.45e-15 | 80.5 |
Msa0402210 | AT3G16857.2 | 35.714 | 126 | 78 | 1 | 22 | 147 | 35 | 157 | 4.80e-20 | 94.7 |
Msa0402210 | AT3G16857.1 | 35.714 | 126 | 78 | 1 | 22 | 147 | 35 | 157 | 5.39e-20 | 94.4 |
Msa0402210 | AT4G31920.1 | 35.537 | 121 | 75 | 1 | 24 | 144 | 17 | 134 | 5.32e-19 | 90.9 |
Msa0402210 | AT2G25180.1 | 34.146 | 123 | 78 | 1 | 24 | 146 | 17 | 136 | 1.76e-18 | 89.4 |
Msa0402210 | AT1G67710.1 | 33.333 | 123 | 79 | 1 | 24 | 146 | 11 | 130 | 6.02e-18 | 87.4 |
Msa0402210 | AT2G01760.1 | 34.400 | 125 | 80 | 1 | 22 | 146 | 9 | 131 | 2.20e-16 | 81.6 |
Msa0402210 | AT5G02810.2 | 63.793 | 58 | 21 | 0 | 492 | 549 | 517 | 574 | 9.70e-16 | 80.9 |
Msa0402210 | AT2G46670.1 | 71.111 | 45 | 13 | 0 | 500 | 544 | 132 | 176 | 1.92e-15 | 75.1 |
Msa0402210 | AT3G16857.3 | 39.326 | 89 | 51 | 1 | 59 | 147 | 2 | 87 | 4.76e-15 | 78.6 |
Msa0402210 | AT2G46790.5 | 69.565 | 46 | 14 | 0 | 499 | 544 | 259 | 304 | 9.11e-15 | 75.9 |
Msa0402210 | AT2G46790.4 | 69.565 | 46 | 14 | 0 | 499 | 544 | 259 | 304 | 9.11e-15 | 75.9 |
Msa0402210 | AT2G46790.2 | 69.565 | 46 | 14 | 0 | 499 | 544 | 299 | 344 | 1.89e-14 | 75.5 |
Msa0402210 | AT2G46790.2 | 63.415 | 41 | 15 | 0 | 105 | 145 | 1 | 41 | 1.29e-12 | 69.7 |
Msa0402210 | AT3G62670.1 | 31.008 | 129 | 83 | 3 | 18 | 146 | 36 | 158 | 3.13e-14 | 75.5 |
Msa0402210 | AT5G58080.1 | 34.091 | 132 | 81 | 3 | 16 | 145 | 8 | 135 | 4.13e-13 | 72.8 |
Msa0402210 | AT2G01760.2 | 31.818 | 110 | 73 | 1 | 37 | 146 | 52 | 159 | 1.51e-12 | 70.1 |
Msa0402210 | AT1G49190.1 | 27.419 | 124 | 87 | 1 | 26 | 149 | 36 | 156 | 2.41e-11 | 66.2 |
Msa0402210 | AT1G49190.2 | 27.419 | 124 | 87 | 1 | 26 | 149 | 36 | 156 | 2.45e-11 | 67.0 |
Find 132 sgRNAs with CRISPR-Local
Find 415 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACATATTCATTGGGTAATA+GGG | 0.232593 | 3_2:+30130463 | None:intergenic |
TTGAATAATAGTAAGAAAAT+TGG | 0.233291 | 3_2:-30135880 | Msa0402210:CDS |
GCACATATTCATTGGGTAAT+AGG | 0.254453 | 3_2:+30130462 | None:intergenic |
ATCCTTAGTTCGCTCTTCTT+TGG | 0.263156 | 3_2:+30131126 | None:intergenic |
ATTGTTGTCTCTGCATTAAT+TGG | 0.263416 | 3_2:-30130033 | Msa0402210:three_prime_UTR |
GAACAATAGGTCCCATTTCT+TGG | 0.266361 | 3_2:+30130772 | None:intergenic |
CGCTCACCTCTTGCTCTTGT+TGG | 0.270627 | 3_2:+30132833 | None:intergenic |
GGACAATGAACCCCATTTCT+TGG | 0.284413 | 3_2:+30130691 | None:intergenic |
TTGTACTCCACCTGCATCTT+TGG | 0.287125 | 3_2:-30130854 | Msa0402210:CDS |
ACTCCCGATGACAAATAATA+TGG | 0.320119 | 3_2:+30130628 | None:intergenic |
GGTTGTAAGCACATATTCAT+TGG | 0.352891 | 3_2:+30130454 | None:intergenic |
AGTCTTATACATCCAAGAAA+TGG | 0.355720 | 3_2:-30130784 | Msa0402210:CDS |
CAACCAGGTCAGATTCCTTC+AGG | 0.363330 | 3_2:-30130436 | Msa0402210:CDS |
AACTAAATCTTACTTATAAT+AGG | 0.364003 | 3_2:+30134752 | None:intergenic |
CAAAATTAAGTAAAGTTGAT+AGG | 0.368608 | 3_2:-30130378 | Msa0402210:CDS |
CATCAGTGTCATCGGAGAAC+AGG | 0.370393 | 3_2:+30132899 | None:intergenic |
GCGAACTAAGGATTGGGGTT+GGG | 0.374057 | 3_2:-30131116 | Msa0402210:CDS |
CGAACTAAGGATTGGGGTTG+GGG | 0.375308 | 3_2:-30131115 | Msa0402210:CDS |
TTCTGCGCAATTCTTTGTCT+CGG | 0.375322 | 3_2:+30134777 | None:intergenic |
CATTCTGATGCATGATCATC+TGG | 0.375477 | 3_2:+30132016 | None:intergenic |
TGTCTGATGCATCCAAGAAA+TGG | 0.381220 | 3_2:-30130703 | Msa0402210:CDS |
CAGCATGAACAATCCCTTCA+AGG | 0.386500 | 3_2:+30131043 | None:intergenic |
GTCTGATGCATCCAAGAAAT+GGG | 0.388638 | 3_2:-30130702 | Msa0402210:CDS |
CTCTTGAGATGTTGTTATCA+AGG | 0.389075 | 3_2:-30135775 | Msa0402210:intron |
CTAATGAACTCTTAAATTTG+TGG | 0.392317 | 3_2:-30134551 | Msa0402210:CDS |
GGTGTTAATGTGGATCTTAA+TGG | 0.393979 | 3_2:-30130220 | Msa0402210:CDS |
ATCTTCATGCCCTTCTTCTT+CGG | 0.403681 | 3_2:+30134815 | None:intergenic |
TATCCATATTATTTGTCATC+GGG | 0.404835 | 3_2:-30130631 | Msa0402210:CDS |
CATATCGAGCTCAGAACAAT+AGG | 0.405798 | 3_2:+30130759 | None:intergenic |
TGCCTCTATTCCTTCTTCAA+TGG | 0.406096 | 3_2:-30130059 | Msa0402210:three_prime_UTR |
GATCCTTGATAGGATAATAT+AGG | 0.434563 | 3_2:+30130082 | None:intergenic |
AGAAGAGCGAACTAAGGATT+GGG | 0.437707 | 3_2:-30131122 | Msa0402210:CDS |
ATTGGCCATCACTTGCTATG+AGG | 0.439887 | 3_2:-30130015 | Msa0402210:three_prime_UTR |
ACCAGGTATACTATTGCTGC+TGG | 0.455033 | 3_2:+30130897 | None:intergenic |
AATAGAGGCAGATCCTTGAT+AGG | 0.457498 | 3_2:+30130072 | None:intergenic |
TTCCATTGAAGAAGGAATAG+AGG | 0.462169 | 3_2:+30130057 | None:intergenic |
GTTGTAAGCACATATTCATT+GGG | 0.463517 | 3_2:+30130455 | None:intergenic |
TCTGCGCAATTCTTTGTCTC+GGG | 0.465345 | 3_2:+30134778 | None:intergenic |
AACTTCCATCCTCACATGTA+AGG | 0.465807 | 3_2:+30131011 | None:intergenic |
TCATTTACTCCATGGACATC+AGG | 0.468519 | 3_2:+30131989 | None:intergenic |
AGAAGCACTATTCAAGAGAC+AGG | 0.475811 | 3_2:-30132865 | Msa0402210:CDS |
TGATACATTTGCGCCGATGA+AGG | 0.476546 | 3_2:+30130589 | None:intergenic |
CCCAGCAGCAATAGTATACC+TGG | 0.477013 | 3_2:-30130898 | Msa0402210:CDS |
CTCCAAAGAAGAGCGAACTA+AGG | 0.481928 | 3_2:-30131128 | Msa0402210:CDS |
ATTGAATATGATGAAAATGA+AGG | 0.483324 | 3_2:-30130184 | Msa0402210:CDS |
GTCTTATACATCCAAGAAAT+GGG | 0.483992 | 3_2:-30130783 | Msa0402210:CDS |
GTTAAATTATGACTTTGATC+TGG | 0.486159 | 3_2:-30132962 | Msa0402210:CDS |
AAGAAGAGCGAACTAAGGAT+TGG | 0.487567 | 3_2:-30131123 | Msa0402210:CDS |
TTGGCCATCACTTGCTATGA+GGG | 0.489175 | 3_2:-30130014 | Msa0402210:three_prime_UTR |
TCATGTCGTCGAAATGACTA+AGG | 0.490307 | 3_2:-30130116 | Msa0402210:three_prime_UTR |
GGAGTAAATGATCAGCGAAC+AGG | 0.494921 | 3_2:-30131977 | Msa0402210:intron |
ATGTTAGATCTTTCACGCTC+AGG | 0.497470 | 3_2:+30130670 | None:intergenic |
TTTGGGGTATGGAGAGTGAA+GGG | 0.498907 | 3_2:-30135909 | Msa0402210:exon |
TCATGCCCTTCTTCTTCGGA+AGG | 0.501684 | 3_2:+30134819 | None:intergenic |
AAGAGTTCATTAGTGCGTAA+AGG | 0.501760 | 3_2:+30134561 | None:intergenic |
CTCTCAATAGATAAAGAACC+AGG | 0.507067 | 3_2:+30130880 | None:intergenic |
CTGTTTGTATTGTTATCGCT+AGG | 0.509038 | 3_2:+30132928 | None:intergenic |
GTTCCTATATTATCCTATCA+AGG | 0.509571 | 3_2:-30130085 | Msa0402210:three_prime_UTR |
GGTCAGTCATGGCCATCCTT+CGG | 0.511134 | 3_2:-30130415 | Msa0402210:CDS |
TGTGAGGCTTCCAAAGATGC+AGG | 0.515634 | 3_2:+30130844 | None:intergenic |
TCATGTTATGATGCCTTCAT+CGG | 0.517737 | 3_2:-30130602 | Msa0402210:CDS |
AGTTGGCCTTCCGAAGAAGA+AGG | 0.517951 | 3_2:-30134825 | Msa0402210:CDS |
AGAAAATTAGGTATGTCAAT+CGG | 0.521151 | 3_2:-30130300 | Msa0402210:CDS |
CAGCATGATTCTGCAGGTCG+TGG | 0.521808 | 3_2:+30130557 | None:intergenic |
AGGATAATATAGGAACTGAT+TGG | 0.522297 | 3_2:+30130092 | None:intergenic |
TTCGCTGATCATTTACTCCA+TGG | 0.523141 | 3_2:+30131981 | None:intergenic |
GGAAACTATAGATCTCATAC+TGG | 0.527599 | 3_2:-30134852 | Msa0402210:CDS |
GTTGTTAAGTGCTTGAGACT+CGG | 0.531794 | 3_2:-30134606 | Msa0402210:CDS |
GACATCATTCCGGTGGTATG+AGG | 0.533530 | 3_2:+30130490 | None:intergenic |
CATGAAGCATGTGCTCAACA+AGG | 0.536975 | 3_2:-30130985 | Msa0402210:CDS |
TTATCCATATTATTTGTCAT+CGG | 0.538736 | 3_2:-30130632 | Msa0402210:CDS |
TGCTAATGCTGATGCTGTTG+AGG | 0.539629 | 3_2:-30132044 | Msa0402210:CDS |
AGCGAACTAAGGATTGGGGT+TGG | 0.541428 | 3_2:-30131117 | Msa0402210:CDS |
GATCTCATACTGGCTGAAGT+TGG | 0.542729 | 3_2:-30134842 | Msa0402210:CDS |
ATAGGGGTAGGACATCATTC+CGG | 0.544576 | 3_2:+30130480 | None:intergenic |
CCAGGTATACTATTGCTGCT+GGG | 0.549234 | 3_2:+30130898 | None:intergenic |
CGAGTTATCATCAGTGTCAT+CGG | 0.550154 | 3_2:+30132891 | None:intergenic |
ATGAATATGTGCTTACAACC+AGG | 0.553880 | 3_2:-30130451 | Msa0402210:CDS |
GAATGTCAGCCTGATGTCCA+TGG | 0.557310 | 3_2:-30131998 | Msa0402210:CDS |
TGTGGACGCACATGTGGAGA+AGG | 0.558944 | 3_2:-30134533 | Msa0402210:CDS |
TTGAATATGATGAAAATGAA+GGG | 0.559631 | 3_2:-30130183 | Msa0402210:CDS |
ATGTACCAGCATGATTCTGC+AGG | 0.560138 | 3_2:+30130551 | None:intergenic |
CACGACCTGCAGAATCATGC+TGG | 0.560739 | 3_2:-30130556 | Msa0402210:CDS |
TGATGCACTGAATGCAGAGA+AGG | 0.561148 | 3_2:-30134873 | Msa0402210:CDS |
ATCAGTCCAACAAGAGCAAG+AGG | 0.563155 | 3_2:-30132839 | Msa0402210:intron |
TCGGATGAACTTCCGAAGGA+TGG | 0.565075 | 3_2:+30130403 | None:intergenic |
ATCAGTGTCATCGGAGAACA+GGG | 0.565153 | 3_2:+30132900 | None:intergenic |
TAAATTTGTGGACGCACATG+TGG | 0.565713 | 3_2:-30134539 | Msa0402210:CDS |
TGAAAGACGGCCTCGTGTGA+GGG | 0.569464 | 3_2:-30130266 | Msa0402210:CDS |
GAGCTAGAGATTACTCTCCC+AGG | 0.571790 | 3_2:-30130161 | Msa0402210:intron |
AATAGTAAGAAAATTGGTGA+TGG | 0.572128 | 3_2:-30135874 | Msa0402210:CDS |
TGATTCAAATACCTCTCAAG+AGG | 0.572978 | 3_2:-30135809 | Msa0402210:CDS |
TGCTTCGGATGAACTTCCGA+AGG | 0.577350 | 3_2:+30130399 | None:intergenic |
ATTCATTGGGTAATAGGGGT+AGG | 0.578636 | 3_2:+30130468 | None:intergenic |
AGATTCCTTCAGGTCAGTCA+TGG | 0.579147 | 3_2:-30130426 | Msa0402210:CDS |
CAGTTTGTCAGTAAGATGAA+TGG | 0.579522 | 3_2:-30130241 | Msa0402210:CDS |
AGCTAGAGATTACTCTCCCA+GGG | 0.581473 | 3_2:-30130160 | Msa0402210:intron |
CAGGTATACTATTGCTGCTG+GGG | 0.581806 | 3_2:+30130899 | None:intergenic |
GGAAACAACTTGCTGAAAGA+CGG | 0.584344 | 3_2:-30130279 | Msa0402210:CDS |
CTGAAAGACGGCCTCGTGTG+AGG | 0.586756 | 3_2:-30130267 | Msa0402210:CDS |
GAAAGACGGCCTCGTGTGAG+GGG | 0.590286 | 3_2:-30130265 | Msa0402210:CDS |
TGCCGCCTTACATGTGAGGA+TGG | 0.593042 | 3_2:-30131016 | Msa0402210:CDS |
GATGGCCATGACTGACCTGA+AGG | 0.597115 | 3_2:+30130421 | None:intergenic |
GTTGGCCTTCCGAAGAAGAA+GGG | 0.599234 | 3_2:-30134824 | Msa0402210:CDS |
ACATATTCATTGGGTAATAG+GGG | 0.603859 | 3_2:+30130464 | None:intergenic |
ATGAAGCATGTGCTCAACAA+GGG | 0.604325 | 3_2:-30130984 | Msa0402210:CDS |
AGTGATGTCTGCACAAGATG+AGG | 0.604714 | 3_2:-30134637 | Msa0402210:CDS |
TCATCATATTCAATGGAAGG+AGG | 0.605016 | 3_2:+30130193 | None:intergenic |
TAAGATGAATGGTGTTAATG+TGG | 0.608624 | 3_2:-30130230 | Msa0402210:CDS |
TAATTGATGAGGGTGTACAC+TGG | 0.616873 | 3_2:+30129983 | None:intergenic |
TTGTTGATAGAAGTAAAGTG+AGG | 0.622065 | 3_2:-30135849 | Msa0402210:CDS |
CAAGGCGGTCCTCATACCAC+CGG | 0.623009 | 3_2:-30130499 | Msa0402210:CDS |
GCAACCCTCATAGCAAGTGA+TGG | 0.627606 | 3_2:+30130010 | None:intergenic |
CACTACAATCATGTTCCACA+AGG | 0.630620 | 3_2:-30130517 | Msa0402210:CDS |
GGACGCACATGTGGAGAAGG+AGG | 0.632559 | 3_2:-30134530 | Msa0402210:CDS |
GTGGTATGAGGACCGCCTTG+TGG | 0.638168 | 3_2:+30130502 | None:intergenic |
TGACCTGAAGGAATCTGACC+TGG | 0.642802 | 3_2:+30130433 | None:intergenic |
CATGTCGTCGAAATGACTAA+GGG | 0.645701 | 3_2:-30130115 | Msa0402210:three_prime_UTR |
CATGTGGAGAAGGAGGCGCA+TGG | 0.648174 | 3_2:-30134523 | Msa0402210:intron |
GAGGCTTCCAAAGATGCAGG+TGG | 0.655405 | 3_2:+30130847 | None:intergenic |
TTCCATCCTCACATGTAAGG+CGG | 0.658020 | 3_2:+30131014 | None:intergenic |
ACAAACTGTCCCCTCACACG+AGG | 0.662346 | 3_2:+30130256 | None:intergenic |
TGAAGCATGTGCTCAACAAG+GGG | 0.671878 | 3_2:-30130983 | Msa0402210:CDS |
TACAATCATGTTCCACAAGG+CGG | 0.678482 | 3_2:-30130514 | Msa0402210:CDS |
GGGGTAGGACATCATTCCGG+TGG | 0.679136 | 3_2:+30130483 | None:intergenic |
TCTGATGCATCCAAGAAATG+GGG | 0.684504 | 3_2:-30130701 | Msa0402210:CDS |
TCTGATGCATGATCATCTGG+AGG | 0.693536 | 3_2:+30132019 | None:intergenic |
GAAGAGCGAACTAAGGATTG+GGG | 0.699832 | 3_2:-30131121 | Msa0402210:CDS |
TCTCAAGCACTTAACAACAA+CGG | 0.708874 | 3_2:+30134611 | None:intergenic |
TAAGTGCTTGAGACTCGGAG+CGG | 0.719512 | 3_2:-30134601 | Msa0402210:CDS |
ACAATGCCGCCTTACATGTG+AGG | 0.719839 | 3_2:-30131020 | Msa0402210:CDS |
AGTGTCATCGGAGAACAGGG+TGG | 0.756718 | 3_2:+30132903 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAAAGTGATTTTATTTTTTT+TGG | - | chr3_2:30130009-30130028 | Msa0402210:three_prime_UTR | 10.0% |
!!! | AAAGTGATTTTATTTTTTTT+GGG | - | chr3_2:30130010-30130029 | Msa0402210:three_prime_UTR | 10.0% |
!!! | TATTTTTAAAAAATTTGTAC+TGG | + | chr3_2:30131755-30131774 | None:intergenic | 10.0% |
!!! | TATTTTTTACATTATATTCA+AGG | + | chr3_2:30131963-30131982 | None:intergenic | 10.0% |
!!! | TCATTATTTGTTTAATTTTA+TGG | + | chr3_2:30134362-30134381 | None:intergenic | 10.0% |
!!! | AAACAAATAATGATTTATTT+TGG | - | chr3_2:30134369-30134388 | Msa0402210:intron | 10.0% |
!!! | AAGTGATTTTATTTTTTTTG+GGG | - | chr3_2:30130011-30130030 | Msa0402210:three_prime_UTR | 15.0% |
!! | TTGAATAATAGTAAGAAAAT+TGG | - | chr3_2:30130056-30130075 | Msa0402210:three_prime_UTR | 15.0% |
!! | TTAATTTCATTCTTTAATGT+TGG | - | chr3_2:30130513-30130532 | Msa0402210:CDS | 15.0% |
!!! | TTTTTCTATCAATTAAAAAC+TGG | - | chr3_2:30130897-30130916 | Msa0402210:CDS | 15.0% |
!! | AACTAAATCTTACTTATAAT+AGG | + | chr3_2:30131187-30131206 | None:intergenic | 15.0% |
!!! | ATTTAACTCAAGAATTTTAT+TGG | + | chr3_2:30131230-30131249 | None:intergenic | 15.0% |
!! | TTCTAAATTTCTAAATACAA+TGG | + | chr3_2:30131617-30131636 | None:intergenic | 15.0% |
!! | ATATTTCATATCAAATCATA+GGG | - | chr3_2:30132063-30132082 | Msa0402210:intron | 15.0% |
!! | AATAATAAATGCTTATGAAA+AGG | - | chr3_2:30132348-30132367 | Msa0402210:intron | 15.0% |
!! | ATAATAAATGCTTATGAAAA+GGG | - | chr3_2:30132349-30132368 | Msa0402210:intron | 15.0% |
!!! | AGTTTAATTTAAGAAATCTT+CGG | + | chr3_2:30133211-30133230 | None:intergenic | 15.0% |
!! | AGATTTCTTAAATTAAACTT+TGG | - | chr3_2:30133212-30133231 | Msa0402210:intron | 15.0% |
!! | AAAAAATCTGTTGAAAATTT+GGG | + | chr3_2:30134675-30134694 | None:intergenic | 15.0% |
!! | TAAAAAATCTGTTGAAAATT+TGG | + | chr3_2:30134676-30134695 | None:intergenic | 15.0% |
!!! | AAATTTTCAACAGATTTTTT+AGG | - | chr3_2:30134675-30134694 | Msa0402210:intron | 15.0% |
!!! | ATTTTATTTTTTTTGGGGTA+TGG | - | chr3_2:30130016-30130035 | Msa0402210:three_prime_UTR | 20.0% |
!! | GTGAAAAACAATAAAAGATA+GGG | + | chr3_2:30130556-30130575 | None:intergenic | 20.0% |
!! | AATATCAGAGTATAAACATT+TGG | - | chr3_2:30130868-30130887 | Msa0402210:CDS | 20.0% |
!!! | ATTGATTTGTTTTATTCCTA+CGG | - | chr3_2:30130927-30130946 | Msa0402210:CDS | 20.0% |
!! | AGTTAAATCAAATTATGTTC+TGG | - | chr3_2:30131242-30131261 | Msa0402210:intron | 20.0% |
!! | AAACATTGTGCAATATTAAA+TGG | - | chr3_2:30131526-30131545 | Msa0402210:intron | 20.0% |
!! | GTGATAACAAAAAATGAAAA+TGG | + | chr3_2:30131657-30131676 | None:intergenic | 20.0% |
!! | AAAAATTTGTACTGGAAATA+GGG | + | chr3_2:30131747-30131766 | None:intergenic | 20.0% |
!! | AAAAAATTTGTACTGGAAAT+AGG | + | chr3_2:30131748-30131767 | None:intergenic | 20.0% |
!!! | TGAGTTTGAATTAATTTGAA+AGG | - | chr3_2:30131876-30131895 | Msa0402210:intron | 20.0% |
!! | CTTTACTTATCATAATCATT+TGG | - | chr3_2:30131992-30132011 | Msa0402210:CDS | 20.0% |
!! | CTATGATTTGATATGAAATA+TGG | + | chr3_2:30132064-30132083 | None:intergenic | 20.0% |
!! | CATATTTCATATCAAATCAT+AGG | - | chr3_2:30132062-30132081 | Msa0402210:intron | 20.0% |
!! | TATTTCATATCAAATCATAG+GGG | - | chr3_2:30132064-30132083 | Msa0402210:intron | 20.0% |
!! | TTTCTTAAGAAATGTGAAAA+AGG | + | chr3_2:30132191-30132210 | None:intergenic | 20.0% |
!! | ACAAGATAGTAGTATTAATT+AGG | - | chr3_2:30132308-30132327 | Msa0402210:intron | 20.0% |
!! | CAAGATAGTAGTATTAATTA+GGG | - | chr3_2:30132309-30132328 | Msa0402210:intron | 20.0% |
!! | AAGATAGTAGTATTAATTAG+GGG | - | chr3_2:30132310-30132329 | Msa0402210:intron | 20.0% |
!! | TAATAAATGCTTATGAAAAG+GGG | - | chr3_2:30132350-30132369 | Msa0402210:intron | 20.0% |
!! | TATGAGGTCAATAATTATAA+GGG | + | chr3_2:30132493-30132512 | None:intergenic | 20.0% |
!!! | AGATTTTCATATGAACTTAT+GGG | - | chr3_2:30132757-30132776 | Msa0402210:intron | 20.0% |
!! | ATCAACCATACAATATAATA+TGG | - | chr3_2:30132781-30132800 | Msa0402210:intron | 20.0% |
!! | ACATTCCATATTATATTGTA+TGG | + | chr3_2:30132789-30132808 | None:intergenic | 20.0% |
!! | ATATAATATGGAATGTAGAA+TGG | - | chr3_2:30132793-30132812 | Msa0402210:intron | 20.0% |
!!! | AATAGCTTTTATATTTTTGC+TGG | - | chr3_2:30132925-30132944 | Msa0402210:CDS | 20.0% |
!!! | CATAGATTAATCAATTTTCA+AGG | + | chr3_2:30133186-30133205 | None:intergenic | 20.0% |
!! | ATTGCATTTACAAAGAAAAA+GGG | + | chr3_2:30133311-30133330 | None:intergenic | 20.0% |
!! | TATTGCATTTACAAAGAAAA+AGG | + | chr3_2:30133312-30133331 | None:intergenic | 20.0% |
!!! | TATGATAAATTGTTGATTAC+TGG | - | chr3_2:30133384-30133403 | Msa0402210:intron | 20.0% |
!!! | TATGTATGTTCCTTTAAAAA+TGG | + | chr3_2:30133424-30133443 | None:intergenic | 20.0% |
!!! | GCAGCTTAAAATTTATTTTA+GGG | + | chr3_2:30133477-30133496 | None:intergenic | 20.0% |
!!! | TGCAGCTTAAAATTTATTTT+AGG | + | chr3_2:30133478-30133497 | None:intergenic | 20.0% |
!! | ACATTAATACAAAAACAAAG+AGG | - | chr3_2:30133591-30133610 | Msa0402210:intron | 20.0% |
!! | AAAAATCTGTTGAAAATTTG+GGG | + | chr3_2:30134674-30134693 | None:intergenic | 20.0% |
!! | TTATCCATATTATTTGTCAT+CGG | - | chr3_2:30135304-30135323 | Msa0402210:intron | 20.0% |
!!! | AACTTTACTTAATTTTGCTT+CGG | + | chr3_2:30135555-30135574 | None:intergenic | 20.0% |
!!! | CAAAATTAAGTAAAGTTGAT+AGG | - | chr3_2:30135558-30135577 | Msa0402210:intron | 20.0% |
!!! | TTCATTTTCATCATATTCAA+TGG | + | chr3_2:30135753-30135772 | None:intergenic | 20.0% |
!! | ATTGAATATGATGAAAATGA+AGG | - | chr3_2:30135752-30135771 | Msa0402210:intron | 20.0% |
!! | TTGAATATGATGAAAATGAA+GGG | - | chr3_2:30135753-30135772 | Msa0402210:intron | 20.0% |
! | AATAGTAAGAAAATTGGTGA+TGG | - | chr3_2:30130062-30130081 | Msa0402210:three_prime_UTR | 25.0% |
! | CCATTCATAATCAACAAAAT+AGG | + | chr3_2:30130236-30130255 | None:intergenic | 25.0% |
!!! | CCTATTTTGTTGATTATGAA+TGG | - | chr3_2:30130233-30130252 | Msa0402210:CDS | 25.0% |
! | ACTAAAATTATCCTAGAGAA+TGG | + | chr3_2:30130489-30130508 | None:intergenic | 25.0% |
! | GGTGAAAAACAATAAAAGAT+AGG | + | chr3_2:30130557-30130576 | None:intergenic | 25.0% |
!!! | TTTATTGTTTTTCACCTTTG+AGG | - | chr3_2:30130561-30130580 | Msa0402210:CDS | 25.0% |
! | TAAACATTCTAGATTCTCAT+CGG | - | chr3_2:30130623-30130642 | Msa0402210:CDS | 25.0% |
!! | ATATTGATTAATTTCCACCA+TGG | - | chr3_2:30130672-30130691 | Msa0402210:CDS | 25.0% |
! | CAAAAATCCATCATATAAAC+AGG | + | chr3_2:30130783-30130802 | None:intergenic | 25.0% |
!!! | CTGTTTATATGATGGATTTT+TGG | - | chr3_2:30130781-30130800 | Msa0402210:CDS | 25.0% |
!! | GTATAACAGTGTCTAAAATT+TGG | - | chr3_2:30130840-30130859 | Msa0402210:CDS | 25.0% |
!!! | TTGATTTGTTTTATTCCTAC+GGG | - | chr3_2:30130928-30130947 | Msa0402210:CDS | 25.0% |
! | CTAATGAACTCTTAAATTTG+TGG | - | chr3_2:30131385-30131404 | Msa0402210:intron | 25.0% |
! | AAGATTCATAGATATGAAGT+TGG | + | chr3_2:30131449-30131468 | None:intergenic | 25.0% |
!!! | AGTTGGTGACAAATTAATTA+TGG | + | chr3_2:30131494-30131513 | None:intergenic | 25.0% |
!! | GTTAGTGAGTCTTATATTAA+GGG | + | chr3_2:30132110-30132129 | None:intergenic | 25.0% |
! | TTTAATACACATACAAGCAA+AGG | + | chr3_2:30132267-30132286 | None:intergenic | 25.0% |
! | GGACGAAAATAAAATCAAAT+GGG | - | chr3_2:30132384-30132403 | Msa0402210:intron | 25.0% |
!!! | TGTATATTAGCTTTTCGAAT+TGG | - | chr3_2:30132467-30132486 | Msa0402210:intron | 25.0% |
! | GTATGAGGTCAATAATTATA+AGG | + | chr3_2:30132494-30132513 | None:intergenic | 25.0% |
!! | GATTTTCATAGACATAAAGA+TGG | + | chr3_2:30132631-30132650 | None:intergenic | 25.0% |
!!! | GACTTTTTCAGATTATAAGT+TGG | - | chr3_2:30132705-30132724 | Msa0402210:intron | 25.0% |
!! | GAGATTTTCATATGAACTTA+TGG | - | chr3_2:30132756-30132775 | Msa0402210:intron | 25.0% |
!! | GATTTTCATATGAACTTATG+GGG | - | chr3_2:30132758-30132777 | Msa0402210:intron | 25.0% |
!! | ATTTCAATTTGAAATCAGGA+AGG | + | chr3_2:30132908-30132927 | None:intergenic | 25.0% |
!! | AGCTATTTCAATTTGAAATC+AGG | + | chr3_2:30132912-30132931 | None:intergenic | 25.0% |
! | GTTAAATTATGACTTTGATC+TGG | - | chr3_2:30132974-30132993 | Msa0402210:CDS | 25.0% |
!! | TTATCATACCAATAACTTGT+GGG | + | chr3_2:30133372-30133391 | None:intergenic | 25.0% |
! | TTTATCATACCAATAACTTG+TGG | + | chr3_2:30133373-30133392 | None:intergenic | 25.0% |
!!! | ATGCAAATGACCATTTTTAA+AGG | - | chr3_2:30133411-30133430 | Msa0402210:intron | 25.0% |
! | TAATACAAAAACAAAGAGGA+AGG | - | chr3_2:30133595-30133614 | Msa0402210:intron | 25.0% |
! | AATACAAAAACAAAGAGGAA+GGG | - | chr3_2:30133596-30133615 | Msa0402210:intron | 25.0% |
!! | TTAGCATTGAAGTTATATAG+TGG | - | chr3_2:30134033-30134052 | Msa0402210:intron | 25.0% |
!! | AAGTTATATAGTGGAATTGA+TGG | - | chr3_2:30134042-30134061 | Msa0402210:intron | 25.0% |
! | ATGAAACAGAATTGCTTAAA+GGG | - | chr3_2:30134138-30134157 | Msa0402210:intron | 25.0% |
!! | TATTTTCTCTTCTCTTAATC+CGG | - | chr3_2:30134269-30134288 | Msa0402210:intron | 25.0% |
! | TGGAATTCAATAACTAGAAT+GGG | + | chr3_2:30134342-30134361 | None:intergenic | 25.0% |
! | ATGGAATTCAATAACTAGAA+TGG | + | chr3_2:30134343-30134362 | None:intergenic | 25.0% |
! | AGATTAGAAAGTAGAAACTA+TGG | + | chr3_2:30134492-30134511 | None:intergenic | 25.0% |
! | TTCTACTTTCTAATCTGAAA+TGG | - | chr3_2:30134496-30134515 | Msa0402210:intron | 25.0% |
!! | ATAAAATTTTATTCAGCCTC+AGG | + | chr3_2:30134702-30134721 | None:intergenic | 25.0% |
! | TCAGAGAGAACAATTAAAAA+TGG | + | chr3_2:30134749-30134768 | None:intergenic | 25.0% |
! | TATCCATATTATTTGTCATC+GGG | - | chr3_2:30135305-30135324 | Msa0402210:intron | 25.0% |
!!! | GCTGTTTTGATAAGAAAATT+AGG | - | chr3_2:30135624-30135643 | Msa0402210:intron | 25.0% |
! | AGAAAATTAGGTATGTCAAT+CGG | - | chr3_2:30135636-30135655 | Msa0402210:intron | 25.0% |
!! | TTTTCATCATATTCAATGGA+AGG | + | chr3_2:30135749-30135768 | None:intergenic | 25.0% |
! | TTGTTGATAGAAGTAAAGTG+AGG | - | chr3_2:30130087-30130106 | Msa0402210:three_prime_UTR | 30.0% |
TGTTAGCCATATTTGTATGT+TGG | - | chr3_2:30130342-30130361 | Msa0402210:CDS | 30.0% | |
! | TTTTCCTAAAACCTTGATTG+TGG | + | chr3_2:30130383-30130402 | None:intergenic | 30.0% |
!!! | ACAATCAAGGTTTTAGGAAA+AGG | - | chr3_2:30130382-30130401 | Msa0402210:CDS | 30.0% |
CACAAATACATCAAAAACCT+CGG | + | chr3_2:30130417-30130436 | None:intergenic | 30.0% | |
AAAATTATCCTAGAGAATGG+CGG | + | chr3_2:30130486-30130505 | None:intergenic | 30.0% | |
AAACATTCTAGATTCTCATC+GGG | - | chr3_2:30130624-30130643 | Msa0402210:CDS | 30.0% | |
! | ATAGGTGTTGCAATTTATGA+TGG | + | chr3_2:30130726-30130745 | None:intergenic | 30.0% |
!!! | TTATATGATGGATTTTTGGC+TGG | - | chr3_2:30130785-30130804 | Msa0402210:CDS | 30.0% |
CACTGTTATACTGTTATCAA+TGG | + | chr3_2:30130831-30130850 | None:intergenic | 30.0% | |
!!! | TGATTTGTTTTATTCCTACG+GGG | - | chr3_2:30130929-30130948 | Msa0402210:CDS | 30.0% |
AGATGTTCAAAACATTGATG+AGG | + | chr3_2:30131269-30131288 | None:intergenic | 30.0% | |
GCAATATTAAATGGATGTAG+AGG | - | chr3_2:30131535-30131554 | Msa0402210:intron | 30.0% | |
TTTAAATACTGACAATCTGC+AGG | + | chr3_2:30131843-30131862 | None:intergenic | 30.0% | |
TTCAAACTCACATTTGCATA+AGG | + | chr3_2:30131866-30131885 | None:intergenic | 30.0% | |
ATCATTTGGTCAATCTTGTA+TGG | - | chr3_2:30132006-30132025 | Msa0402210:CDS | 30.0% | |
! | GGTTAGTGAGTCTTATATTA+AGG | + | chr3_2:30132111-30132130 | None:intergenic | 30.0% |
TTTCTTAATACCCATGAATC+AGG | + | chr3_2:30132132-30132151 | None:intergenic | 30.0% | |
AGAAATGTGAAAAAGGCAAT+GGG | + | chr3_2:30132184-30132203 | None:intergenic | 30.0% | |
AAGAAATGTGAAAAAGGCAA+TGG | + | chr3_2:30132185-30132204 | None:intergenic | 30.0% | |
! | TATTAATTAGGGGTATGCTT+AGG | - | chr3_2:30132320-30132339 | Msa0402210:intron | 30.0% |
ATGAAAAGGGGTTTACATTT+AGG | - | chr3_2:30132362-30132381 | Msa0402210:intron | 30.0% | |
TGAAAAGGGGTTTACATTTA+GGG | - | chr3_2:30132363-30132382 | Msa0402210:intron | 30.0% | |
GGGACGAAAATAAAATCAAA+TGG | - | chr3_2:30132383-30132402 | Msa0402210:intron | 30.0% | |
AATCACATAATGCAAGTATG+AGG | + | chr3_2:30132509-30132528 | None:intergenic | 30.0% | |
! | TACGAAAGGGTCTTATATAT+AGG | - | chr3_2:30132553-30132572 | Msa0402210:intron | 30.0% |
! | ACGAAAGGGTCTTATATATA+GGG | - | chr3_2:30132554-30132573 | Msa0402210:intron | 30.0% |
! | TATCATACCAATAACTTGTG+GGG | + | chr3_2:30133371-30133390 | None:intergenic | 30.0% |
!!! | TATTTTAGGGCAACTAATTC+AGG | + | chr3_2:30133464-30133483 | None:intergenic | 30.0% |
TTAGCAATAGTAGACTGAAA+AGG | + | chr3_2:30133878-30133897 | None:intergenic | 30.0% | |
CATGAAACAGAATTGCTTAA+AGG | - | chr3_2:30134137-30134156 | Msa0402210:intron | 30.0% | |
! | AACAATACTTTGGAAGTAGT+TGG | + | chr3_2:30134312-30134331 | None:intergenic | 30.0% |
ACATAAATTGCCAAAAAGGT+GGG | + | chr3_2:30134409-30134428 | None:intergenic | 30.0% | |
ACATGTAACTGAATTACTTG+TGG | - | chr3_2:30134447-30134466 | Msa0402210:intron | 30.0% | |
! | ATTTCCAACAAAATCCCTTT+TGG | + | chr3_2:30134529-30134548 | None:intergenic | 30.0% |
ATGCTAAAAAGAAACCTTGA+AGG | - | chr3_2:30134879-30134898 | Msa0402210:CDS | 30.0% | |
TGCTAAAAAGAAACCTTGAA+GGG | - | chr3_2:30134880-30134899 | Msa0402210:CDS | 30.0% | |
! | GCAAATTTTCTTCTTCGTAA+CGG | + | chr3_2:30135124-30135143 | None:intergenic | 30.0% |
! | AGTCTTATACATCCAAGAAA+TGG | - | chr3_2:30135152-30135171 | Msa0402210:intron | 30.0% |
GTCTTATACATCCAAGAAAT+GGG | - | chr3_2:30135153-30135172 | Msa0402210:intron | 30.0% | |
ACATATTCATTGGGTAATAG+GGG | + | chr3_2:30135475-30135494 | None:intergenic | 30.0% | |
CACATATTCATTGGGTAATA+GGG | + | chr3_2:30135476-30135495 | None:intergenic | 30.0% | |
GTTGTAAGCACATATTCATT+GGG | + | chr3_2:30135484-30135503 | None:intergenic | 30.0% | |
! | TAAGATGAATGGTGTTAATG+TGG | - | chr3_2:30135706-30135725 | Msa0402210:intron | 30.0% |
AGGATAATATAGGAACTGAT+TGG | + | chr3_2:30135847-30135866 | None:intergenic | 30.0% | |
GTTCCTATATTATCCTATCA+AGG | - | chr3_2:30135851-30135870 | Msa0402210:CDS | 30.0% | |
GATCCTTGATAGGATAATAT+AGG | + | chr3_2:30135857-30135876 | None:intergenic | 30.0% | |
! | CAACAATTTTCCATTGAAGA+AGG | + | chr3_2:30135890-30135909 | None:intergenic | 30.0% |
ATTGTTGTCTCTGCATTAAT+TGG | - | chr3_2:30135903-30135922 | Msa0402210:CDS | 30.0% | |
TGATTCAAATACCTCTCAAG+AGG | - | chr3_2:30130127-30130146 | Msa0402210:intron | 35.0% | |
AAGTGTAAAAACCTCTTGAG+AGG | + | chr3_2:30130141-30130160 | None:intergenic | 35.0% | |
CTCTTGAGATGTTGTTATCA+AGG | - | chr3_2:30130161-30130180 | Msa0402210:intron | 35.0% | |
TCAACCATTACATAACACCA+TGG | + | chr3_2:30130692-30130711 | None:intergenic | 35.0% | |
AGAAACATGGTAGGTTTGAT+AGG | + | chr3_2:30130744-30130763 | None:intergenic | 35.0% | |
GGAAACTATAGATCTCATAC+TGG | - | chr3_2:30131084-30131103 | Msa0402210:CDS | 35.0% | |
TCTCAAGCACTTAACAACAA+CGG | + | chr3_2:30131328-30131347 | None:intergenic | 35.0% | |
AAGAGTTCATTAGTGCGTAA+AGG | + | chr3_2:30131378-30131397 | None:intergenic | 35.0% | |
TGTTTACAGACACAGTAAGT+TGG | + | chr3_2:30131511-30131530 | None:intergenic | 35.0% | |
ATGTAGAGGACTAACTAACT+TGG | - | chr3_2:30131549-30131568 | Msa0402210:intron | 35.0% | |
AAGTTGACAGAACAAAACGA+AGG | + | chr3_2:30131582-30131601 | None:intergenic | 35.0% | |
TCTAAATACAATGGTTGCGA+TGG | + | chr3_2:30131608-30131627 | None:intergenic | 35.0% | |
GTTGTGAGATATTAGATGAG+AGG | - | chr3_2:30131920-30131939 | Msa0402210:intron | 35.0% | |
TCAATCTTGTATGGAGTCAT+AGG | - | chr3_2:30132015-30132034 | Msa0402210:CDS | 35.0% | |
CAATCTTGTATGGAGTCATA+GGG | - | chr3_2:30132016-30132035 | Msa0402210:CDS | 35.0% | |
AATCTTGTATGGAGTCATAG+GGG | - | chr3_2:30132017-30132036 | Msa0402210:CDS | 35.0% | |
TGATATGAAATATGGCTTCC+AGG | + | chr3_2:30132056-30132075 | None:intergenic | 35.0% | |
GTCTTATATTAAGGGACAGA+GGG | + | chr3_2:30132102-30132121 | None:intergenic | 35.0% | |
! | AGTCTTATATTAAGGGACAG+AGG | + | chr3_2:30132103-30132122 | None:intergenic | 35.0% |
TCAAATGGGTGCTTAGATAT+AGG | - | chr3_2:30132398-30132417 | Msa0402210:intron | 35.0% | |
CAAATGGGTGCTTAGATATA+GGG | - | chr3_2:30132399-30132418 | Msa0402210:intron | 35.0% | |
AGCAAGCAATAAACTTGTCA+GGG | - | chr3_2:30132443-30132462 | Msa0402210:intron | 35.0% | |
TATCCACCAATACTTACGAA+AGG | - | chr3_2:30132539-30132558 | Msa0402210:intron | 35.0% | |
ATCCACCAATACTTACGAAA+GGG | - | chr3_2:30132540-30132559 | Msa0402210:intron | 35.0% | |
TAAGACCCTTTCGTAAGTAT+TGG | + | chr3_2:30132548-30132567 | None:intergenic | 35.0% | |
GTCTTATATATAGGGACAGA+AGG | - | chr3_2:30132562-30132581 | Msa0402210:intron | 35.0% | |
GTACTCTCTTGAACATTTCT+TGG | + | chr3_2:30132609-30132628 | None:intergenic | 35.0% | |
AAACTGACGTCAATTGTAGT+TGG | - | chr3_2:30132651-30132670 | Msa0402210:intron | 35.0% | |
AACTGACGTCAATTGTAGTT+GGG | - | chr3_2:30132652-30132671 | Msa0402210:intron | 35.0% | |
CATATGAAAATCTCCTGTGA+AGG | + | chr3_2:30132750-30132769 | None:intergenic | 35.0% | |
!! | TTATATTTTTGCTGGCAGCT+TGG | - | chr3_2:30132933-30132952 | Msa0402210:CDS | 35.0% |
CTGTTTGTATTGTTATCGCT+AGG | + | chr3_2:30133011-30133030 | None:intergenic | 35.0% | |
!! | GTTTCTAGTTTCTACACGAT+TGG | + | chr3_2:30133669-30133688 | None:intergenic | 35.0% |
ATGTAGCTGGGTGAATAAAA+AGG | + | chr3_2:30133754-30133773 | None:intergenic | 35.0% | |
TCATTATGCAGTATGTAGCT+GGG | + | chr3_2:30133766-30133785 | None:intergenic | 35.0% | |
ATCATTATGCAGTATGTAGC+TGG | + | chr3_2:30133767-30133786 | None:intergenic | 35.0% | |
AAACAGAATTGCTTAAAGGG+AGG | - | chr3_2:30134141-30134160 | Msa0402210:intron | 35.0% | |
AACAGAATTGCTTAAAGGGA+GGG | - | chr3_2:30134142-30134161 | Msa0402210:intron | 35.0% | |
TAGCAAAATAGTTGGAAGGA+GGG | - | chr3_2:30134206-30134225 | Msa0402210:intron | 35.0% | |
GGGTTGTTCTAACAATACTT+TGG | + | chr3_2:30134322-30134341 | None:intergenic | 35.0% | |
CATAAATTGCCAAAAAGGTG+GGG | + | chr3_2:30134408-30134427 | None:intergenic | 35.0% | |
GACATAAATTGCCAAAAAGG+TGG | + | chr3_2:30134410-30134429 | None:intergenic | 35.0% | |
GCAGACATAAATTGCCAAAA+AGG | + | chr3_2:30134413-30134432 | None:intergenic | 35.0% | |
TGAAATGGCTTCAATCCAAA+AGG | - | chr3_2:30134511-30134530 | Msa0402210:intron | 35.0% | |
GAAATGGCTTCAATCCAAAA+GGG | - | chr3_2:30134512-30134531 | Msa0402210:intron | 35.0% | |
! | CAATCCAAAAGGGATTTTGT+TGG | - | chr3_2:30134522-30134541 | Msa0402210:intron | 35.0% |
GCATCTCAAATGTCGTAATT+AGG | + | chr3_2:30134582-30134601 | None:intergenic | 35.0% | |
CTAACTCATCCTTACAAAAC+CGG | + | chr3_2:30134650-30134669 | None:intergenic | 35.0% | |
!!! | AACAGATTTTTTAGGTCCTG+AGG | - | chr3_2:30134683-30134702 | Msa0402210:intron | 35.0% |
CTCTCAATAGATAAAGAACC+AGG | + | chr3_2:30135059-30135078 | None:intergenic | 35.0% | |
ACTCCCGATGACAAATAATA+TGG | + | chr3_2:30135311-30135330 | None:intergenic | 35.0% | |
TCATGTTATGATGCCTTCAT+CGG | - | chr3_2:30135334-30135353 | Msa0402210:intron | 35.0% | |
GCACATATTCATTGGGTAAT+AGG | + | chr3_2:30135477-30135496 | None:intergenic | 35.0% | |
GGTTGTAAGCACATATTCAT+TGG | + | chr3_2:30135485-30135504 | None:intergenic | 35.0% | |
ATGAATATGTGCTTACAACC+AGG | - | chr3_2:30135485-30135504 | Msa0402210:intron | 35.0% | |
CAGTTTGTCAGTAAGATGAA+TGG | - | chr3_2:30135695-30135714 | Msa0402210:intron | 35.0% | |
GGTGTTAATGTGGATCTTAA+TGG | - | chr3_2:30135716-30135735 | Msa0402210:intron | 35.0% | |
TCATCATATTCAATGGAAGG+AGG | + | chr3_2:30135746-30135765 | None:intergenic | 35.0% | |
TAACATATTCAAGCATCCCT+GGG | + | chr3_2:30135795-30135814 | None:intergenic | 35.0% | |
TTAACATATTCAAGCATCCC+TGG | + | chr3_2:30135796-30135815 | None:intergenic | 35.0% | |
TTCCATTGAAGAAGGAATAG+AGG | + | chr3_2:30135882-30135901 | None:intergenic | 35.0% | |
CACAGGCCAACATACAAATA+TGG | + | chr3_2:30130351-30130370 | None:intergenic | 40.0% | |
! | ATTTGTATGTTGGCCTGTGA+CGG | - | chr3_2:30130352-30130371 | Msa0402210:CDS | 40.0% |
ATTCAACACATGGACCTCAA+AGG | + | chr3_2:30130578-30130597 | None:intergenic | 40.0% | |
CTCGTCACATATTCAACACA+TGG | + | chr3_2:30130588-30130607 | None:intergenic | 40.0% | |
!! | TCCACCATGGTGTTATGTAA+TGG | - | chr3_2:30130685-30130704 | Msa0402210:CDS | 40.0% |
ACCATTACATAACACCATGG+TGG | + | chr3_2:30130689-30130708 | None:intergenic | 40.0% | |
! | CATCATATAAACAGGCGTTG+CGG | + | chr3_2:30130775-30130794 | None:intergenic | 40.0% |
ATCTTCATGCCCTTCTTCTT+CGG | + | chr3_2:30131124-30131143 | None:intergenic | 40.0% | |
TTCTGCGCAATTCTTTGTCT+CGG | + | chr3_2:30131162-30131181 | None:intergenic | 40.0% | |
GTTGTTAAGTGCTTGAGACT+CGG | - | chr3_2:30131330-30131349 | Msa0402210:intron | 40.0% | |
TAAATTTGTGGACGCACATG+TGG | - | chr3_2:30131397-30131416 | Msa0402210:intron | 40.0% | |
AGACTCACTAACCTGATTCA+TGG | - | chr3_2:30132118-30132137 | Msa0402210:intron | 40.0% | |
GACTCACTAACCTGATTCAT+GGG | - | chr3_2:30132119-30132138 | Msa0402210:intron | 40.0% | |
CAGCAAGCAATAAACTTGTC+AGG | - | chr3_2:30132442-30132461 | Msa0402210:intron | 40.0% | |
AAGAGACAATCATCCTTCAC+AGG | - | chr3_2:30132734-30132753 | Msa0402210:intron | 40.0% | |
AGCAGAATCAAGCTAGACTA+TGG | + | chr3_2:30132830-30132849 | None:intergenic | 40.0% | |
! | ACACACACGACACTTTTATC+TGG | - | chr3_2:30132862-30132881 | Msa0402210:CDS | 40.0% |
CGAGTTATCATCAGTGTCAT+CGG | + | chr3_2:30133048-30133067 | None:intergenic | 40.0% | |
!! | AGAAGCACTATTCAAGAGAC+AGG | - | chr3_2:30133071-30133090 | Msa0402210:intron | 40.0% |
! | AAGTTTGCACTCTGAAAGGT+TGG | + | chr3_2:30133251-30133270 | None:intergenic | 40.0% |
GTCAAAGTTTGCACTCTGAA+AGG | + | chr3_2:30133255-30133274 | None:intergenic | 40.0% | |
TTGAAAACCATGAGCAGATC+AGG | - | chr3_2:30133503-30133522 | Msa0402210:intron | 40.0% | |
TAAACTTCCTGATCTGCTCA+TGG | + | chr3_2:30133513-30133532 | None:intergenic | 40.0% | |
AAGGGTCACAATAGGAAAGT+GGG | - | chr3_2:30133614-30133633 | Msa0402210:intron | 40.0% | |
CATTCTGATGCATGATCATC+TGG | + | chr3_2:30133923-30133942 | None:intergenic | 40.0% | |
TCATTTACTCCATGGACATC+AGG | + | chr3_2:30133950-30133969 | None:intergenic | 40.0% | |
TTCGCTGATCATTTACTCCA+TGG | + | chr3_2:30133958-30133977 | None:intergenic | 40.0% | |
! | ATAGTGGAATTGATGGAACC+TGG | - | chr3_2:30134049-30134068 | Msa0402210:intron | 40.0% |
TAGTGGAATTGATGGAACCT+GGG | - | chr3_2:30134050-30134069 | Msa0402210:intron | 40.0% | |
AGTTGTTGGGCTCAAAGTAT+GGG | - | chr3_2:30134086-30134105 | Msa0402210:intron | 40.0% | |
AATAATCCTCCCCAAGTACT+AGG | + | chr3_2:30134115-30134134 | None:intergenic | 40.0% | |
ATTGCTTAAAGGGAGGGAAT+TGG | - | chr3_2:30134148-30134167 | Msa0402210:intron | 40.0% | |
AGGACAGGTAGCAAAATAGT+TGG | - | chr3_2:30134198-30134217 | Msa0402210:intron | 40.0% | |
CAGGTAGCAAAATAGTTGGA+AGG | - | chr3_2:30134202-30134221 | Msa0402210:intron | 40.0% | |
GTAGCAAAATAGTTGGAAGG+AGG | - | chr3_2:30134205-30134224 | Msa0402210:intron | 40.0% | |
AGCAAAATAGTTGGAAGGAG+GGG | - | chr3_2:30134207-30134226 | Msa0402210:intron | 40.0% | |
AGTAGTTGGCCATTACTGAT+AGG | + | chr3_2:30134298-30134317 | None:intergenic | 40.0% | |
ATGTCGTAATTAGGCGACAA+GGG | + | chr3_2:30134573-30134592 | None:intergenic | 40.0% | |
AATGTCGTAATTAGGCGACA+AGG | + | chr3_2:30134574-30134593 | None:intergenic | 40.0% | |
! | ACATTTGAGATGCCTTGTGT+TGG | - | chr3_2:30134589-30134608 | Msa0402210:CDS | 40.0% |
!! | CGGTTTTGTAAGGATGAGTT+AGG | - | chr3_2:30134648-30134667 | Msa0402210:intron | 40.0% |
ATCCTTAGTTCGCTCTTCTT+TGG | + | chr3_2:30134813-30134832 | None:intergenic | 40.0% | |
AAGAAGAGCGAACTAAGGAT+TGG | - | chr3_2:30134813-30134832 | Msa0402210:CDS | 40.0% | |
AGAAGAGCGAACTAAGGATT+GGG | - | chr3_2:30134814-30134833 | Msa0402210:CDS | 40.0% | |
AACTTCCATCCTCACATGTA+AGG | + | chr3_2:30134928-30134947 | None:intergenic | 40.0% | |
ATGAAGCATGTGCTCAACAA+GGG | - | chr3_2:30134952-30134971 | Msa0402210:intron | 40.0% | |
! | TTCGTAACGGTTTTTCTGTG+AGG | + | chr3_2:30135111-30135130 | None:intergenic | 40.0% |
GAACAATAGGTCCCATTTCT+TGG | + | chr3_2:30135167-30135186 | None:intergenic | 40.0% | |
CATATCGAGCTCAGAACAAT+AGG | + | chr3_2:30135180-30135199 | None:intergenic | 40.0% | |
! | TTGTGATGCAAATTTTGCGC+AGG | + | chr3_2:30135212-30135231 | None:intergenic | 40.0% |
TGTCTGATGCATCCAAGAAA+TGG | - | chr3_2:30135233-30135252 | Msa0402210:intron | 40.0% | |
GTCTGATGCATCCAAGAAAT+GGG | - | chr3_2:30135234-30135253 | Msa0402210:intron | 40.0% | |
TCTGATGCATCCAAGAAATG+GGG | - | chr3_2:30135235-30135254 | Msa0402210:intron | 40.0% | |
ATGTTAGATCTTTCACGCTC+AGG | + | chr3_2:30135269-30135288 | None:intergenic | 40.0% | |
CACTACAATCATGTTCCACA+AGG | - | chr3_2:30135419-30135438 | Msa0402210:intron | 40.0% | |
TACAATCATGTTCCACAAGG+CGG | - | chr3_2:30135422-30135441 | Msa0402210:intron | 40.0% | |
ATTCATTGGGTAATAGGGGT+AGG | + | chr3_2:30135471-30135490 | None:intergenic | 40.0% | |
!! | GGAAACAACTTGCTGAAAGA+CGG | - | chr3_2:30135657-30135676 | Msa0402210:intron | 40.0% |
TCATGTCGTCGAAATGACTA+AGG | - | chr3_2:30135820-30135839 | Msa0402210:CDS | 40.0% | |
CATGTCGTCGAAATGACTAA+GGG | - | chr3_2:30135821-30135840 | Msa0402210:CDS | 40.0% | |
AATAGAGGCAGATCCTTGAT+AGG | + | chr3_2:30135867-30135886 | None:intergenic | 40.0% | |
TGCCTCTATTCCTTCTTCAA+TGG | - | chr3_2:30135877-30135896 | Msa0402210:CDS | 40.0% | |
!!! | TTTTGGGGTATGGAGAGTGA+AGG | - | chr3_2:30130026-30130045 | Msa0402210:three_prime_UTR | 45.0% |
! | TTTGGGGTATGGAGAGTGAA+GGG | - | chr3_2:30130027-30130046 | Msa0402210:three_prime_UTR | 45.0% |
TAGTGTGATCATCGCGATCA+AGG | - | chr3_2:30130441-30130460 | Msa0402210:CDS | 45.0% | |
! | ACCTACCATGTTTCTGCCAT+AGG | - | chr3_2:30130749-30130768 | Msa0402210:CDS | 45.0% |
CGCAACGCCTGTTTATATGA+TGG | - | chr3_2:30130773-30130792 | Msa0402210:CDS | 45.0% | |
CACTTTACGTTAAACCCCGT+AGG | + | chr3_2:30130946-30130965 | None:intergenic | 45.0% | |
CTACGGGGTTTAACGTAAAG+TGG | - | chr3_2:30130944-30130963 | Msa0402210:CDS | 45.0% | |
GGGGTTTAACGTAAAGTGGT+TGG | - | chr3_2:30130948-30130967 | Msa0402210:CDS | 45.0% | |
TGATGCACTGAATGCAGAGA+AGG | - | chr3_2:30131063-30131082 | Msa0402210:CDS | 45.0% | |
! | GATCTCATACTGGCTGAAGT+TGG | - | chr3_2:30131094-30131113 | Msa0402210:CDS | 45.0% |
TCTGCGCAATTCTTTGTCTC+GGG | + | chr3_2:30131161-30131180 | None:intergenic | 45.0% | |
AGTGATGTCTGCACAAGATG+AGG | - | chr3_2:30131299-30131318 | Msa0402210:intron | 45.0% | |
TGCCTACATTAAGGGATGGA+GGG | + | chr3_2:30132161-30132180 | None:intergenic | 45.0% | |
GCAATGGGTGCCTACATTAA+GGG | + | chr3_2:30132169-30132188 | None:intergenic | 45.0% | |
TGGGTGCTTAGATATAGGGA+CGG | - | chr3_2:30132403-30132422 | Msa0402210:intron | 45.0% | |
TGCTTAGATATAGGGACGGA+GGG | - | chr3_2:30132407-30132426 | Msa0402210:intron | 45.0% | |
!! | GACCCTTTCGTAAGTATTGG+TGG | + | chr3_2:30132545-30132564 | None:intergenic | 45.0% |
CAAGCTAGACTATGGTTGAG+AGG | + | chr3_2:30132822-30132841 | None:intergenic | 45.0% | |
ATCAGTGTCATCGGAGAACA+GGG | + | chr3_2:30133039-30133058 | None:intergenic | 45.0% | |
ATCAGTCCAACAAGAGCAAG+AGG | - | chr3_2:30133097-30133116 | Msa0402210:intron | 45.0% | |
CTATGTGCCCCACAAGTTAT+TGG | - | chr3_2:30133361-30133380 | Msa0402210:intron | 45.0% | |
AGGGCAACTAATTCAGGAGT+TGG | + | chr3_2:30133458-30133477 | None:intergenic | 45.0% | |
CAAAGAGGAAGGGTCACAAT+AGG | - | chr3_2:30133606-30133625 | Msa0402210:intron | 45.0% | |
GAAGGGTCACAATAGGAAAG+TGG | - | chr3_2:30133613-30133632 | Msa0402210:intron | 45.0% | |
AGGGTCACAATAGGAAAGTG+GGG | - | chr3_2:30133615-30133634 | Msa0402210:intron | 45.0% | |
!!! | ATCACCTCTGGTTTTGTGCA+TGG | + | chr3_2:30133646-30133665 | None:intergenic | 45.0% |
TGCTAATGCTGATGCTGTTG+AGG | - | chr3_2:30133892-30133911 | Msa0402210:intron | 45.0% | |
TCTGATGCATGATCATCTGG+AGG | + | chr3_2:30133920-30133939 | None:intergenic | 45.0% | |
GGAGTAAATGATCAGCGAAC+AGG | - | chr3_2:30133959-30133978 | Msa0402210:intron | 45.0% | |
AGTGGAATTGATGGAACCTG+GGG | - | chr3_2:30134051-30134070 | Msa0402210:intron | 45.0% | |
AATTGATGGAACCTGGGGAA+TGG | - | chr3_2:30134056-30134075 | Msa0402210:intron | 45.0% | |
ATTGATGGAACCTGGGGAAT+GGG | - | chr3_2:30134057-30134076 | Msa0402210:intron | 45.0% | |
CAGTTGTTGGGCTCAAAGTA+TGG | - | chr3_2:30134085-30134104 | Msa0402210:intron | 45.0% | |
AGTATGGGAAGCCTAGTACT+TGG | - | chr3_2:30134101-30134120 | Msa0402210:intron | 45.0% | |
GTATGGGAAGCCTAGTACTT+GGG | - | chr3_2:30134102-30134121 | Msa0402210:intron | 45.0% | |
TATGGGAAGCCTAGTACTTG+GGG | - | chr3_2:30134103-30134122 | Msa0402210:intron | 45.0% | |
! | ATTGGTTGCACTTGCTGAGT+TGG | - | chr3_2:30134166-30134185 | Msa0402210:intron | 45.0% |
ATCCGGATGCCTATCAGTAA+TGG | - | chr3_2:30134286-30134305 | Msa0402210:intron | 45.0% | |
! | CTCATCTTTCCCCACCTTTT+TGG | - | chr3_2:30134396-30134415 | Msa0402210:intron | 45.0% |
CAAGGGGCAGATCACAATAA+AGG | + | chr3_2:30134556-30134575 | None:intergenic | 45.0% | |
TGTCGTAATTAGGCGACAAG+GGG | + | chr3_2:30134572-30134591 | None:intergenic | 45.0% | |
!! | CCTTACAAAACCGGCTTGTA+AGG | + | chr3_2:30134641-30134660 | None:intergenic | 45.0% |
!! | CCTTACAAGCCGGTTTTGTA+AGG | - | chr3_2:30134638-30134657 | Msa0402210:CDS | 45.0% |
CTCCAAAGAAGAGCGAACTA+AGG | - | chr3_2:30134808-30134827 | Msa0402210:CDS | 45.0% | |
GAAGAGCGAACTAAGGATTG+GGG | - | chr3_2:30134815-30134834 | Msa0402210:CDS | 45.0% | |
CAGCATGAACAATCCCTTCA+AGG | + | chr3_2:30134896-30134915 | None:intergenic | 45.0% | |
TTCCATCCTCACATGTAAGG+CGG | + | chr3_2:30134925-30134944 | None:intergenic | 45.0% | |
CATGAAGCATGTGCTCAACA+AGG | - | chr3_2:30134951-30134970 | Msa0402210:intron | 45.0% | |
TGAAGCATGTGCTCAACAAG+GGG | - | chr3_2:30134953-30134972 | Msa0402210:intron | 45.0% | |
CAGGTATACTATTGCTGCTG+GGG | + | chr3_2:30135040-30135059 | None:intergenic | 45.0% | |
CCAGGTATACTATTGCTGCT+GGG | + | chr3_2:30135041-30135060 | None:intergenic | 45.0% | |
ACCAGGTATACTATTGCTGC+TGG | + | chr3_2:30135042-30135061 | None:intergenic | 45.0% | |
TTGTACTCCACCTGCATCTT+TGG | - | chr3_2:30135082-30135101 | Msa0402210:intron | 45.0% | |
GGACAATGAACCCCATTTCT+TGG | + | chr3_2:30135248-30135267 | None:intergenic | 45.0% | |
! | TGATACATTTGCGCCGATGA+AGG | + | chr3_2:30135350-30135369 | None:intergenic | 45.0% |
ATGTACCAGCATGATTCTGC+AGG | + | chr3_2:30135388-30135407 | None:intergenic | 45.0% | |
ATAGGGGTAGGACATCATTC+CGG | + | chr3_2:30135459-30135478 | None:intergenic | 45.0% | |
AGATTCCTTCAGGTCAGTCA+TGG | - | chr3_2:30135510-30135529 | Msa0402210:intron | 45.0% | |
AGCTAGAGATTACTCTCCCA+GGG | - | chr3_2:30135776-30135795 | Msa0402210:CDS | 45.0% | |
!! | ATTGGCCATCACTTGCTATG+AGG | - | chr3_2:30135921-30135940 | Msa0402210:exon | 45.0% |
!! | TTGGCCATCACTTGCTATGA+GGG | - | chr3_2:30135922-30135941 | Msa0402210:exon | 45.0% |
! | GCGGCCACAATCAAGGTTTT+AGG | - | chr3_2:30130376-30130395 | Msa0402210:CDS | 50.0% |
TCCTTTGACCGCCATTCTCT+AGG | - | chr3_2:30130475-30130494 | Msa0402210:CDS | 50.0% | |
TCCTAGAGAATGGCGGTCAA+AGG | + | chr3_2:30130479-30130498 | None:intergenic | 50.0% | |
GCCTATGGCAGAAACATGGT+AGG | + | chr3_2:30130753-30130772 | None:intergenic | 50.0% | |
!! | AGTTGGCCTTCCGAAGAAGA+AGG | - | chr3_2:30131111-30131130 | Msa0402210:CDS | 50.0% |
!! | GTTGGCCTTCCGAAGAAGAA+GGG | - | chr3_2:30131112-30131131 | Msa0402210:CDS | 50.0% |
TCATGCCCTTCTTCTTCGGA+AGG | + | chr3_2:30131120-30131139 | None:intergenic | 50.0% | |
TAAGTGCTTGAGACTCGGAG+CGG | - | chr3_2:30131335-30131354 | Msa0402210:intron | 50.0% | |
AGGGGATGCTTACTATGTCC+TGG | - | chr3_2:30132035-30132054 | Msa0402210:CDS | 50.0% | |
CTCCCTCCATCCCTTAATGT+AGG | - | chr3_2:30132156-30132175 | Msa0402210:intron | 50.0% | |
GTGCCTACATTAAGGGATGG+AGG | + | chr3_2:30132162-30132181 | None:intergenic | 50.0% | |
TGGGTGCCTACATTAAGGGA+TGG | + | chr3_2:30132165-30132184 | None:intergenic | 50.0% | |
GGCAATGGGTGCCTACATTA+AGG | + | chr3_2:30132170-30132189 | None:intergenic | 50.0% | |
GTGCTTAGATATAGGGACGG+AGG | - | chr3_2:30132406-30132425 | Msa0402210:intron | 50.0% | |
CAGGAAGGTCTATGCGAGAA+TGG | + | chr3_2:30132893-30132912 | None:intergenic | 50.0% | |
CATCAGTGTCATCGGAGAAC+AGG | + | chr3_2:30133040-30133059 | None:intergenic | 50.0% | |
GTGTCCATGCACAAAACCAG+AGG | - | chr3_2:30133639-30133658 | Msa0402210:intron | 50.0% | |
CTACACGATTGGATCACCTC+TGG | + | chr3_2:30133658-30133677 | None:intergenic | 50.0% | |
GAATGTCAGCCTGATGTCCA+TGG | - | chr3_2:30133938-30133957 | Msa0402210:intron | 50.0% | |
GAATGGGTGGGTCAGTTGTT+GGG | - | chr3_2:30134073-30134092 | Msa0402210:intron | 50.0% | |
! | TTGCACTTGCTGAGTTGGCA+GGG | - | chr3_2:30134171-30134190 | Msa0402210:intron | 50.0% |
GGCCATTACTGATAGGCATC+CGG | + | chr3_2:30134291-30134310 | None:intergenic | 50.0% | |
GGGGCAGATCACAATAAAGG+TGG | + | chr3_2:30134553-30134572 | None:intergenic | 50.0% | |
!! | TGCCTTGTGTTGGCTTTGAG+AGG | - | chr3_2:30134599-30134618 | Msa0402210:CDS | 50.0% |
!! | GCCTTGTGTTGGCTTTGAGA+GGG | - | chr3_2:30134600-30134619 | Msa0402210:CDS | 50.0% |
ACCCTCTCAAAGCCAACACA+AGG | + | chr3_2:30134604-30134623 | None:intergenic | 50.0% | |
!! | TTGTGTTGGCTTTGAGAGGG+TGG | - | chr3_2:30134603-30134622 | Msa0402210:CDS | 50.0% |
!! | CAAAACCGGCTTGTAAGGTG+AGG | + | chr3_2:30134636-30134655 | None:intergenic | 50.0% |
AGCGAACTAAGGATTGGGGT+TGG | - | chr3_2:30134819-30134838 | Msa0402210:CDS | 50.0% | |
GCGAACTAAGGATTGGGGTT+GGG | - | chr3_2:30134820-30134839 | Msa0402210:CDS | 50.0% | |
CGAACTAAGGATTGGGGTTG+GGG | - | chr3_2:30134821-30134840 | Msa0402210:CDS | 50.0% | |
ACAATGCCGCCTTACATGTG+AGG | - | chr3_2:30134916-30134935 | Msa0402210:intron | 50.0% | |
CCCAGCAGCAATAGTATACC+TGG | - | chr3_2:30135038-30135057 | Msa0402210:intron | 50.0% | |
TGTGAGGCTTCCAAAGATGC+AGG | + | chr3_2:30135095-30135114 | None:intergenic | 50.0% | |
GACATCATTCCGGTGGTATG+AGG | + | chr3_2:30135449-30135468 | None:intergenic | 50.0% | |
CAACCAGGTCAGATTCCTTC+AGG | - | chr3_2:30135500-30135519 | Msa0402210:intron | 50.0% | |
TGACCTGAAGGAATCTGACC+TGG | + | chr3_2:30135506-30135525 | None:intergenic | 50.0% | |
TCGGATGAACTTCCGAAGGA+TGG | + | chr3_2:30135536-30135555 | None:intergenic | 50.0% | |
TGCTTCGGATGAACTTCCGA+AGG | + | chr3_2:30135540-30135559 | None:intergenic | 50.0% | |
GAGCTAGAGATTACTCTCCC+AGG | - | chr3_2:30135775-30135794 | Msa0402210:intron | 50.0% | |
GCAACCCTCATAGCAAGTGA+TGG | + | chr3_2:30135929-30135948 | None:intergenic | 50.0% | |
GGAAAAGGTCTGTGACACCG+AGG | - | chr3_2:30130397-30130416 | Msa0402210:CDS | 55.0% | |
TGCGGCCTATGGCAGAAACA+TGG | + | chr3_2:30130757-30130776 | None:intergenic | 55.0% | |
! | TAAACAGGCGTTGCGGCCTA+TGG | + | chr3_2:30130768-30130787 | None:intergenic | 55.0% |
TGTGGACGCACATGTGGAGA+AGG | - | chr3_2:30131403-30131422 | Msa0402210:intron | 55.0% | |
AGTGTCATCGGAGAACAGGG+TGG | + | chr3_2:30133036-30133055 | None:intergenic | 55.0% | |
CGCTCACCTCTTGCTCTTGT+TGG | + | chr3_2:30133106-30133125 | None:intergenic | 55.0% | |
ATGGAACCTGGGGAATGGGT+GGG | - | chr3_2:30134061-30134080 | Msa0402210:intron | 55.0% | |
GGAATGGGTGGGTCAGTTGT+TGG | - | chr3_2:30134072-30134091 | Msa0402210:intron | 55.0% | |
! | GTTGCACTTGCTGAGTTGGC+AGG | - | chr3_2:30134170-30134189 | Msa0402210:intron | 55.0% |
! | TGCTGAGTTGGCAGGGTGTT+AGG | - | chr3_2:30134178-30134197 | Msa0402210:intron | 55.0% |
! | AGTTGGCAGGGTGTTAGGAC+AGG | - | chr3_2:30134183-30134202 | Msa0402210:intron | 55.0% |
!! | TGTTGGCTTTGAGAGGGTGG+AGG | - | chr3_2:30134606-30134625 | Msa0402210:CDS | 55.0% |
GCACTCCTCACCTTACAAGC+CGG | - | chr3_2:30134628-30134647 | Msa0402210:CDS | 55.0% | |
TGCCGCCTTACATGTGAGGA+TGG | - | chr3_2:30134920-30134939 | Msa0402210:intron | 55.0% | |
GAGGCTTCCAAAGATGCAGG+TGG | + | chr3_2:30135092-30135111 | None:intergenic | 55.0% | |
CAGCATGATTCTGCAGGTCG+TGG | + | chr3_2:30135382-30135401 | None:intergenic | 55.0% | |
CACGACCTGCAGAATCATGC+TGG | - | chr3_2:30135380-30135399 | Msa0402210:intron | 55.0% | |
GATGGCCATGACTGACCTGA+AGG | + | chr3_2:30135518-30135537 | None:intergenic | 55.0% | |
GGTCAGTCATGGCCATCCTT+CGG | - | chr3_2:30135521-30135540 | Msa0402210:intron | 55.0% | |
TGAAAGACGGCCTCGTGTGA+GGG | - | chr3_2:30135670-30135689 | Msa0402210:intron | 55.0% | |
ACAAACTGTCCCCTCACACG+AGG | + | chr3_2:30135683-30135702 | None:intergenic | 55.0% | |
! | TATGTTGGCCTGTGACGGCG+CGG | - | chr3_2:30130357-30130376 | Msa0402210:CDS | 60.0% |
GGACGCACATGTGGAGAAGG+AGG | - | chr3_2:30131406-30131425 | Msa0402210:intron | 60.0% | |
! | CATGTGGAGAAGGAGGCGCA+TGG | - | chr3_2:30131413-30131432 | Msa0402210:intron | 60.0% |
GATGGAACCTGGGGAATGGG+TGG | - | chr3_2:30134060-30134079 | Msa0402210:intron | 60.0% | |
AACTGACCCACCCATTCCCC+AGG | + | chr3_2:30134070-30134089 | None:intergenic | 60.0% | |
GGGAAGCCTAGTACTTGGGG+AGG | - | chr3_2:30134106-30134125 | Msa0402210:intron | 60.0% | |
GTGGTATGAGGACCGCCTTG+TGG | + | chr3_2:30135437-30135456 | None:intergenic | 60.0% | |
CAAGGCGGTCCTCATACCAC+CGG | - | chr3_2:30135437-30135456 | Msa0402210:intron | 60.0% | |
GGGGTAGGACATCATTCCGG+TGG | + | chr3_2:30135456-30135475 | None:intergenic | 60.0% | |
CTGAAAGACGGCCTCGTGTG+AGG | - | chr3_2:30135669-30135688 | Msa0402210:intron | 60.0% | |
GAAAGACGGCCTCGTGTGAG+GGG | - | chr3_2:30135671-30135690 | Msa0402210:intron | 60.0% | |
TGACGGCGCGGCCACAATCA+AGG | - | chr3_2:30130369-30130388 | Msa0402210:CDS | 65.0% | |
GATTGTGGCCGCGCCGTCAC+AGG | + | chr3_2:30130368-30130387 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 30129994 | 30135964 | 30129994 | ID=Msa0402210;Name=Msa0402210 |
chr3_2 | mRNA | 30129994 | 30135964 | 30129994 | ID=Msa0402210-mRNA-1;Parent=Msa0402210;Name=Msa0402210-mRNA-1;_AED=0.29;_eAED=0.29;_QI=41|1|1|1|0.83|0.71|7|157|565 |
chr3_2 | exon | 30129994 | 30130135 | 30129994 | ID=Msa0402210-mRNA-1:exon:6012;Parent=Msa0402210-mRNA-1 |
chr3_2 | exon | 30130162 | 30131165 | 30130162 | ID=Msa0402210-mRNA-1:exon:6011;Parent=Msa0402210-mRNA-1 |
chr3_2 | exon | 30131978 | 30132074 | 30131978 | ID=Msa0402210-mRNA-1:exon:6010;Parent=Msa0402210-mRNA-1 |
chr3_2 | exon | 30132840 | 30133007 | 30132840 | ID=Msa0402210-mRNA-1:exon:6009;Parent=Msa0402210-mRNA-1 |
chr3_2 | exon | 30134524 | 30134657 | 30134524 | ID=Msa0402210-mRNA-1:exon:6008;Parent=Msa0402210-mRNA-1 |
chr3_2 | exon | 30134765 | 30134926 | 30134765 | ID=Msa0402210-mRNA-1:exon:6007;Parent=Msa0402210-mRNA-1 |
chr3_2 | exon | 30135776 | 30135964 | 30135776 | ID=Msa0402210-mRNA-1:exon:6006;Parent=Msa0402210-mRNA-1 |
chr3_2 | five_prime_UTR | 30135924 | 30135964 | 30135924 | ID=Msa0402210-mRNA-1:five_prime_utr;Parent=Msa0402210-mRNA-1 |
chr3_2 | CDS | 30135776 | 30135923 | 30135776 | ID=Msa0402210-mRNA-1:cds;Parent=Msa0402210-mRNA-1 |
chr3_2 | CDS | 30134765 | 30134926 | 30134765 | ID=Msa0402210-mRNA-1:cds;Parent=Msa0402210-mRNA-1 |
chr3_2 | CDS | 30134524 | 30134657 | 30134524 | ID=Msa0402210-mRNA-1:cds;Parent=Msa0402210-mRNA-1 |
chr3_2 | CDS | 30132840 | 30133007 | 30132840 | ID=Msa0402210-mRNA-1:cds;Parent=Msa0402210-mRNA-1 |
chr3_2 | CDS | 30131978 | 30132074 | 30131978 | ID=Msa0402210-mRNA-1:cds;Parent=Msa0402210-mRNA-1 |
chr3_2 | CDS | 30130177 | 30131165 | 30130177 | ID=Msa0402210-mRNA-1:cds;Parent=Msa0402210-mRNA-1 |
chr3_2 | three_prime_UTR | 30130162 | 30130176 | 30130162 | ID=Msa0402210-mRNA-1:three_prime_utr;Parent=Msa0402210-mRNA-1 |
chr3_2 | three_prime_UTR | 30129994 | 30130135 | 30129994 | ID=Msa0402210-mRNA-1:three_prime_utr;Parent=Msa0402210-mRNA-1 |
Gene Sequence |
Protein sequence |