Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643520 | XP_003606450.1 | 98.321 | 417 | 5 | 1 | 1 | 415 | 1 | 417 | 0.0 | 853 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643520 | sp|Q75IM9|IVD_ORYSJ | 88.571 | 385 | 44 | 0 | 31 | 415 | 25 | 409 | 0.0 | 723 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643520 | G7JQF7 | 98.321 | 417 | 5 | 1 | 1 | 415 | 1 | 417 | 0.0 | 853 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0609270 | Msa0643520 | 0.833777 | 4.388880e-56 | -8.615850e-47 |
| Msa0609420 | Msa0643520 | 0.800700 | 1.274390e-48 | -8.615850e-47 |
| Msa0643520 | Msa0649820 | 0.820971 | 5.174158e-53 | -8.615850e-47 |
| Msa0643520 | Msa0683000 | 0.927069 | 1.963733e-91 | -8.615850e-47 |
| Msa0643520 | Msa0683030 | 0.908921 | 1.006830e-81 | -8.615850e-47 |
| Msa0643520 | Msa0982380 | 0.812870 | 3.410657e-51 | -8.615850e-47 |
| Msa0643520 | Msa1217950 | 0.842079 | 3.218269e-58 | -8.615850e-47 |
| Msa0643520 | Msa1462640 | 0.813451 | 2.543122e-51 | -8.615850e-47 |
| Msa0374790 | Msa0643520 | 0.826687 | 2.366341e-54 | -8.615850e-47 |
| Msa0424000 | Msa0643520 | 0.809930 | 1.483560e-50 | -8.615850e-47 |
| Msa0470920 | Msa0643520 | 0.814536 | 1.465931e-51 | -8.615850e-47 |
| Msa0481100 | Msa0643520 | 0.837713 | 4.419613e-57 | -8.615850e-47 |
| Msa0547440 | Msa0643520 | 0.833219 | 6.047423e-56 | -8.615850e-47 |
| Msa0578570 | Msa0643520 | 0.832240 | 1.058057e-55 | -8.615850e-47 |
| Msa0602180 | Msa0643520 | 0.950818 | 7.485504e-109 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643520 | MtrunA17_Chr4g0029681 | 98.321 | 417 | 5 | 1 | 1 | 415 | 1 | 417 | 0.0 | 853 |
| Msa0643520 | MtrunA17_Chr7g0242641 | 29.641 | 334 | 228 | 4 | 79 | 411 | 17 | 344 | 1.26e-44 | 158 |
| Msa0643520 | MtrunA17_Chr2g0295521 | 26.736 | 288 | 199 | 6 | 132 | 409 | 519 | 804 | 2.16e-21 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643520 | AT3G45300.1 | 89.153 | 378 | 41 | 0 | 38 | 415 | 32 | 409 | 0.0 | 697 |
| Msa0643520 | AT3G51840.1 | 26.790 | 377 | 267 | 5 | 36 | 411 | 54 | 422 | 6.47e-42 | 153 |
| Msa0643520 | AT3G06810.1 | 26.736 | 288 | 199 | 6 | 132 | 409 | 530 | 815 | 1.70e-21 | 97.4 |
| Msa0643520 | AT5G65110.1 | 23.955 | 359 | 221 | 13 | 107 | 413 | 133 | 491 | 1.03e-11 | 67.4 |
| Msa0643520 | AT5G65110.2 | 23.955 | 359 | 221 | 13 | 107 | 413 | 133 | 491 | 1.12e-11 | 67.0 |
Find 131 sgRNAs with CRISPR-Local
Find 468 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTAGTTTATCCAATTTC+TGG | 0.126605 | 4_3:-46553201 | None:intergenic |
| GGATCTGTTGGTCTTTCTTA+TGG | 0.218631 | 4_3:+46551893 | Msa0643520:CDS |
| ATTCTTGTTCTAATCATCTT+TGG | 0.276096 | 4_3:-46549698 | None:intergenic |
| ATTCAGTACTGCCCAGAAAT+TGG | 0.276268 | 4_3:+46553189 | Msa0643520:CDS |
| TGTTAACTTGTGGAAAAGTA+TGG | 0.285642 | 4_3:+46550998 | Msa0643520:CDS |
| GAGATCAGAAGAATGATTAT+TGG | 0.293324 | 4_3:+46556045 | Msa0643520:CDS |
| TGCTTATTTGCAGAGGAGTA+TGG | 0.296519 | 4_3:+46551809 | Msa0643520:intron |
| GGAATCTATTACATTACTTT+TGG | 0.301187 | 4_3:-46556312 | None:intergenic |
| AGCAACACAAGTTGCTTTGC+AGG | 0.308452 | 4_3:+46555924 | Msa0643520:CDS |
| AGGTCTGAGATTCAATAATT+TGG | 0.315835 | 4_3:+46556287 | Msa0643520:three_prime_UTR |
| CATGATGTCTGGACTGGATT+TGG | 0.321758 | 4_3:+46554061 | Msa0643520:CDS |
| AGCAGTTCGGTCGTCCTATT+GGG | 0.323036 | 4_3:+46554165 | Msa0643520:CDS |
| GAGCAGTTCGGTCGTCCTAT+TGG | 0.326208 | 4_3:+46554164 | Msa0643520:CDS |
| GTTCCGGAGGAAAATGTTCT+TGG | 0.329541 | 4_3:+46553356 | Msa0643520:CDS |
| TCTTCTGATCTCACTTGTTC+CGG | 0.339052 | 4_3:-46556034 | None:intergenic |
| CTTCGAGAATTGCTTTGTTC+CGG | 0.341846 | 4_3:+46553340 | Msa0643520:CDS |
| AACTAAATAGTAAACTAATA+TGG | 0.341856 | 4_3:-46549529 | None:intergenic |
| ATGGAATGGGTATAGTGTTT+TGG | 0.342957 | 4_3:-46549510 | None:intergenic |
| TGGGGATCATGTGGGAGCTT+TGG | 0.343115 | 4_3:+46552485 | Msa0643520:CDS |
| TGCAAAGCTGATCGTGTAGA+TGG | 0.343954 | 4_3:+46552635 | Msa0643520:CDS |
| AAGCACATACAGATCTAATA+TGG | 0.347321 | 4_3:-46556196 | None:intergenic |
| ACCTATTGTTGGTACTGTAT+TGG | 0.353949 | 4_3:+46556417 | Msa0643520:three_prime_UTR |
| AACAAGATGTGGTGTACTAA+TGG | 0.357977 | 4_3:+46552677 | Msa0643520:CDS |
| GAAGAGATTAGCCGAGCTTC+AGG | 0.365845 | 4_3:+46551872 | Msa0643520:CDS |
| CCCTAGTTTATCCAATTTCT+GGG | 0.377085 | 4_3:-46553200 | None:intergenic |
| TCAACTTTGAAGCTTATCTC+TGG | 0.384395 | 4_3:+46552465 | Msa0643520:intron |
| CGCTACTACTACTAATTTGA+AGG | 0.388029 | 4_3:+46549396 | Msa0643520:five_prime_UTR |
| TTGCAGGCGATACAATGTTT+AGG | 0.392157 | 4_3:+46555940 | Msa0643520:CDS |
| TCTGAAAAGAGTTGAGAAAA+TGG | 0.394488 | 4_3:-46549735 | None:intergenic |
| CTTCGATGACACTCAGATAC+AGG | 0.395511 | 4_3:+46549811 | Msa0643520:CDS |
| TTGAAGCAAATCATTCCTCT+TGG | 0.399533 | 4_3:+46556237 | Msa0643520:three_prime_UTR |
| GGAGTCTATGTCATGATGTC+TGG | 0.411304 | 4_3:+46554050 | Msa0643520:intron |
| TGGGGAGTTTCAGTTTATAC+AGG | 0.418608 | 4_3:+46554184 | Msa0643520:CDS |
| ATGCGAAGCTCTACGAGATC+GGG | 0.423929 | 4_3:+46556010 | Msa0643520:CDS |
| TGCTCTCTTTGTCGAACATA+AGG | 0.427952 | 4_3:-46554146 | None:intergenic |
| TTACCAGTTGATTGATACAT+AGG | 0.435581 | 4_3:-46551928 | None:intergenic |
| ATAAACTGAAACTCCCCAAT+AGG | 0.438380 | 4_3:-46554179 | None:intergenic |
| GCAGAGGAGTATGGAGGGCT+TGG | 0.439310 | 4_3:+46551818 | Msa0643520:intron |
| TTCCGGAGGAAAATGTTCTT+GGG | 0.444098 | 4_3:+46553357 | Msa0643520:CDS |
| TGCAGTGCCTTACCTATTGT+TGG | 0.444742 | 4_3:+46556406 | Msa0643520:three_prime_UTR |
| TAACCTATGTATCAATCAAC+TGG | 0.447355 | 4_3:+46551925 | Msa0643520:CDS |
| GACGCAACAGCAGGGTCAAA+AGG | 0.449570 | 4_3:+46552896 | Msa0643520:CDS |
| CATACTAATGTTTGAGCAGT+TGG | 0.450831 | 4_3:-46552701 | None:intergenic |
| CAACTTTGAAGCTTATCTCT+GGG | 0.454090 | 4_3:+46552466 | Msa0643520:intron |
| ACAAGATGTGGTGTACTAAT+GGG | 0.455535 | 4_3:+46552678 | Msa0643520:CDS |
| ATCATCGAGAAGGGAATGCC+TGG | 0.460608 | 4_3:+46552932 | Msa0643520:CDS |
| ATAGCGAGGATGAGAAGAAT+TGG | 0.466311 | 4_3:-46549759 | None:intergenic |
| TAGCTGAATCAGATAGTAGT+AGG | 0.469758 | 4_3:-46549445 | None:intergenic |
| CAATGACATGCTATTCCCCT+TGG | 0.471295 | 4_3:+46556087 | Msa0643520:exon |
| GGCAGTTGAGATAAGGATGA+AGG | 0.474878 | 4_3:-46549489 | None:intergenic |
| GAGGAATGAAGTAGTGGAAA+AGG | 0.476214 | 4_3:-46549789 | None:intergenic |
| ATACATCTTTACAGTCTTCA+CGG | 0.482149 | 4_3:+46554325 | Msa0643520:CDS |
| ATAGTAAACTAATATGGAAT+GGG | 0.482537 | 4_3:-46549523 | None:intergenic |
| GAGTATGGAGGGCTTGGTCT+AGG | 0.483008 | 4_3:+46551824 | Msa0643520:CDS |
| TCCAATACAGTACCAACAAT+AGG | 0.483846 | 4_3:-46556418 | None:intergenic |
| AATAGTAAACTAATATGGAA+TGG | 0.484590 | 4_3:-46549524 | None:intergenic |
| GAAAATGTTCTTGGGAAAGA+AGG | 0.485757 | 4_3:+46553365 | Msa0643520:CDS |
| ATGGGAGAATTTAATCTCCA+TGG | 0.486600 | 4_3:+46551017 | Msa0643520:CDS |
| TTCCTCTTGGAAAATGATGA+TGG | 0.489349 | 4_3:+46556250 | Msa0643520:three_prime_UTR |
| TATTGGACGTGATCTCTTCA+AGG | 0.497284 | 4_3:+46556062 | Msa0643520:CDS |
| ACTTAGCTTAGCTTAGCTGT+TGG | 0.501299 | 4_3:-46549653 | None:intergenic |
| GATGCGAAGCTCTACGAGAT+CGG | 0.508301 | 4_3:+46556009 | Msa0643520:CDS |
| CTATGTCATGATGTCTGGAC+TGG | 0.510832 | 4_3:+46554055 | Msa0643520:CDS |
| CTTGTATCATTGTATAGCAA+TGG | 0.513555 | 4_3:+46551850 | Msa0643520:CDS |
| GTTGATGTTGTATATGATAC+GGG | 0.514564 | 4_3:-46549629 | None:intergenic |
| CTACTACTAATTTGAAGGAA+AGG | 0.517673 | 4_3:+46549401 | Msa0643520:five_prime_UTR |
| CTCCATGGGATTACTGCACC+AGG | 0.518403 | 4_3:+46551032 | Msa0643520:CDS |
| GTTCTAATCATCTTTGGCAA+CGG | 0.520212 | 4_3:-46549692 | None:intergenic |
| GCAAAGCTGATCGTGTAGAT+GGG | 0.520482 | 4_3:+46552636 | Msa0643520:CDS |
| GCTTATCTCTGGGGATCATG+TGG | 0.520908 | 4_3:+46552476 | Msa0643520:intron |
| TACTAATTTCAGGATTGTGC+TGG | 0.524388 | 4_3:+46555877 | Msa0643520:intron |
| AGCCGAGCTTCAGGATCTGT+TGG | 0.526762 | 4_3:+46551881 | Msa0643520:CDS |
| TTATGTGTATTCTGTAGCTC+GGG | 0.527867 | 4_3:+46554430 | Msa0643520:CDS |
| AAGCTCTACGAGATCGGGGC+CGG | 0.529045 | 4_3:+46556015 | Msa0643520:CDS |
| ATACAATGTTTAGGTGGAAA+CGG | 0.532313 | 4_3:+46555949 | Msa0643520:CDS |
| CTTATGTGTATTCTGTAGCT+CGG | 0.533799 | 4_3:+46554429 | Msa0643520:CDS |
| CACTGCATTTATCATCGAGA+AGG | 0.536640 | 4_3:+46552922 | Msa0643520:CDS |
| TGTTGATGTTGTATATGATA+CGG | 0.541192 | 4_3:-46549630 | None:intergenic |
| TACAGTACCAACAATAGGTA+AGG | 0.541934 | 4_3:-46556413 | None:intergenic |
| CGAGAATTGCTTTGTTCCGG+AGG | 0.542177 | 4_3:+46553343 | Msa0643520:CDS |
| AAAATGTTCTTGGGAAAGAA+GGG | 0.542799 | 4_3:+46553366 | Msa0643520:CDS |
| TTGACTGGAACTGAGCGCCT+CGG | 0.545543 | 4_3:+46556113 | Msa0643520:three_prime_UTR |
| GTTAACTTGTGGAAAAGTAT+GGG | 0.545610 | 4_3:+46550999 | Msa0643520:CDS |
| TAATTTAGGATGTTAACTTG+TGG | 0.547605 | 4_3:+46550988 | Msa0643520:intron |
| CCCAGAAATTGGATAAACTA+GGG | 0.547673 | 4_3:+46553200 | Msa0643520:CDS |
| ATAATTTGTGTGATCAATGT+GGG | 0.552867 | 4_3:-46550488 | None:intergenic |
| TGGGAGAATTTAATCTCCAT+GGG | 0.554351 | 4_3:+46551018 | Msa0643520:CDS |
| TCAGTTCCAGTCAAAATCCA+AGG | 0.562699 | 4_3:-46556104 | None:intergenic |
| GCCCAGAAATTGGATAAACT+AGG | 0.571430 | 4_3:+46553199 | Msa0643520:CDS |
| CTGCATAATACCAAGGGGAC+CGG | 0.575815 | 4_3:-46554102 | None:intergenic |
| AACATAAATAACTGTACTGG+AGG | 0.582553 | 4_3:-46556333 | None:intergenic |
| GTTCGACAAAGAGAGCAGTT+CGG | 0.583442 | 4_3:+46554152 | Msa0643520:CDS |
| TATGTGAACGAGTATCCAAC+CGG | 0.585904 | 4_3:+46555973 | Msa0643520:CDS |
| CAGGCGATACAATGTTTAGG+TGG | 0.587882 | 4_3:+46555943 | Msa0643520:CDS |
| AATAATTTGTGTGATCAATG+TGG | 0.589596 | 4_3:-46550489 | None:intergenic |
| TACTTAACGGGAACAAGATG+TGG | 0.589905 | 4_3:+46552666 | Msa0643520:CDS |
| GACCAACAGATCCTGAAGCT+CGG | 0.593218 | 4_3:-46551883 | None:intergenic |
| AACTTTGAAGCTTATCTCTG+GGG | 0.593388 | 4_3:+46552467 | Msa0643520:intron |
| TCACACAAATTATTTCCCAA+AGG | 0.594666 | 4_3:+46550498 | Msa0643520:CDS |
| TACCTGGTGCAGTAATCCCA+TGG | 0.597662 | 4_3:-46551034 | None:intergenic |
| ATCGAAGAGGAATGAAGTAG+TGG | 0.599042 | 4_3:-46549795 | None:intergenic |
| CAAAGCTGATCGTGTAGATG+GGG | 0.599234 | 4_3:+46552637 | Msa0643520:CDS |
| CGCATCTCTGAGGAGACGAC+CGG | 0.599352 | 4_3:-46555992 | None:intergenic |
| CAGTTCCAGTCAAAATCCAA+GGG | 0.600077 | 4_3:-46556103 | None:intergenic |
| GTAGCTCGGGACTGTGACAA+CGG | 0.602533 | 4_3:+46554443 | Msa0643520:CDS |
| TTATTTGCAGAGGAGTATGG+AGG | 0.603677 | 4_3:+46551812 | Msa0643520:intron |
| CTTATCTCTGGGGATCATGT+GGG | 0.603883 | 4_3:+46552477 | Msa0643520:CDS |
| TATTTGCAGAGGAGTATGGA+GGG | 0.604314 | 4_3:+46551813 | Msa0643520:intron |
| ACTGCATTTATCATCGAGAA+GGG | 0.609190 | 4_3:+46552923 | Msa0643520:CDS |
| ATCAATGTGGGAAGCATGAG+GGG | 0.621018 | 4_3:-46550476 | None:intergenic |
| TGTTGTATATGATACGGGTA+TGG | 0.621898 | 4_3:-46549624 | None:intergenic |
| GTTCTTGGGAAAGAAGGGAA+AGG | 0.623097 | 4_3:+46553371 | Msa0643520:CDS |
| TGTCTGGACTGGATTTGGAA+AGG | 0.626784 | 4_3:+46554066 | Msa0643520:CDS |
| ACATGACTGCATAATACCAA+GGG | 0.627108 | 4_3:-46554108 | None:intergenic |
| CTCTTTGTCGAACATAAGGA+AGG | 0.631959 | 4_3:-46554142 | None:intergenic |
| GTATCTGAGTGTCATCGAAG+AGG | 0.631985 | 4_3:-46549808 | None:intergenic |
| TTGGATAAACTAGGGATGCG+AGG | 0.637106 | 4_3:+46553208 | Msa0643520:CDS |
| TCTCTGAGGAGACGACCGGT+TGG | 0.638940 | 4_3:-46555988 | None:intergenic |
| TCATCGAGAAGGGAATGCCT+GGG | 0.639355 | 4_3:+46552933 | Msa0643520:CDS |
| GACATGACTGCATAATACCA+AGG | 0.639799 | 4_3:-46554109 | None:intergenic |
| GAAAAGGCAGCAGCATAGCG+AGG | 0.651975 | 4_3:-46549773 | None:intergenic |
| GATCAATGTGGGAAGCATGA+GGG | 0.653184 | 4_3:-46550477 | None:intergenic |
| GCAGTTCGGTCGTCCTATTG+GGG | 0.659632 | 4_3:+46554166 | Msa0643520:CDS |
| TGATCAATGTGGGAAGCATG+AGG | 0.662322 | 4_3:-46550478 | None:intergenic |
| CGTAGAGCTTCGCATCTCTG+AGG | 0.668421 | 4_3:-46556002 | None:intergenic |
| TGCGAAGCTCTACGAGATCG+GGG | 0.673463 | 4_3:+46556011 | Msa0643520:CDS |
| CAACGGAAAAGTTGACCCAA+AGG | 0.674588 | 4_3:+46554460 | Msa0643520:CDS |
| AAAGCTGATCGTGTAGATGG+GGG | 0.688332 | 4_3:+46552638 | Msa0643520:CDS |
| AGTTCCAGTCAAAATCCAAG+GGG | 0.739919 | 4_3:-46556102 | None:intergenic |
| TTACAAAGGAATCATCTCCG+AGG | 0.747071 | 4_3:-46556130 | None:intergenic |
| CATGACTGCATAATACCAAG+GGG | 0.751632 | 4_3:-46554107 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAGAATAAAGAAAATAA+GGG | - | chr4_3:46551132-46551151 | None:intergenic | 10.0% |
| !!! | ATTTTAGAATAAAGAAAATA+AGG | - | chr4_3:46551133-46551152 | None:intergenic | 10.0% |
| !! | TTAAACAAAGAAAATTAAAA+TGG | - | chr4_3:46553258-46553277 | None:intergenic | 10.0% |
| !! | GAAATAATCTTTATATTATT+TGG | + | chr4_3:46553433-46553452 | Msa0643520:intron | 10.0% |
| !! | AATTGAAAAATTCAATTAAA+GGG | - | chr4_3:46554581-46554600 | None:intergenic | 10.0% |
| !! | TAATTGAAAAATTCAATTAA+AGG | - | chr4_3:46554582-46554601 | None:intergenic | 10.0% |
| !! | AAGATAATAAAAAAAATCAA+AGG | - | chr4_3:46555158-46555177 | None:intergenic | 10.0% |
| !! | AACTAAATAGTAAACTAATA+TGG | - | chr4_3:46549532-46549551 | None:intergenic | 15.0% |
| !!! | ATTGTTTATTTATGTTTTGA+TGG | - | chr4_3:46549574-46549593 | None:intergenic | 15.0% |
| !!! | TTTTACAAAAACAGAAAAAT+GGG | - | chr4_3:46549896-46549915 | None:intergenic | 15.0% |
| !!! | TTTTTACAAAAACAGAAAAA+TGG | - | chr4_3:46549897-46549916 | None:intergenic | 15.0% |
| !!! | TCTTTTATCTATAAACAAAT+AGG | - | chr4_3:46550282-46550301 | None:intergenic | 15.0% |
| !!! | AAATTTGAACTTTTTTCATT+TGG | + | chr4_3:46550335-46550354 | Msa0643520:intron | 15.0% |
| !!! | AATTTGAACTTTTTTCATTT+GGG | + | chr4_3:46550336-46550355 | Msa0643520:intron | 15.0% |
| !! | ATTTAATAATACATACCTTT+GGG | - | chr4_3:46550516-46550535 | None:intergenic | 15.0% |
| !!! | ATTTTATATGTCTTACAATT+TGG | - | chr4_3:46552522-46552541 | None:intergenic | 15.0% |
| !!! | GTTTTATACTATATATATGT+GGG | - | chr4_3:46552783-46552802 | None:intergenic | 15.0% |
| !! | ACATATATATAGTATAAAAC+CGG | + | chr4_3:46552783-46552802 | Msa0643520:intron | 15.0% |
| !! | ACTGTAATAAAATGATTTAT+CGG | - | chr4_3:46553114-46553133 | None:intergenic | 15.0% |
| !!! | TAGTCTTTATTATTTTTGAA+AGG | + | chr4_3:46553411-46553430 | Msa0643520:intron | 15.0% |
| !! | ATAAAATAAACCCTTAATTT+GGG | - | chr4_3:46553642-46553661 | None:intergenic | 15.0% |
| !! | AATAAAATAAACCCTTAATT+TGG | - | chr4_3:46553643-46553662 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAGAAGAAGAA+TGG | + | chr4_3:46554949-46554968 | Msa0643520:intron | 15.0% |
| !!! | AATTATTAAGAAAGACTTTT+TGG | + | chr4_3:46555129-46555148 | Msa0643520:intron | 15.0% |
| !!! | AATGAAAATTACTTTTACAA+AGG | - | chr4_3:46556147-46556166 | None:intergenic | 15.0% |
| !!! | AACCTTTTTGAATAATAAAA+AGG | + | chr4_3:46556365-46556384 | Msa0643520:three_prime_UTR | 15.0% |
| !!! | ACCTTTTTGAATAATAAAAA+GGG | + | chr4_3:46556366-46556385 | Msa0643520:three_prime_UTR | 15.0% |
| !!! | TAGGATAGTTATTTTATTCA+CGG | - | chr4_3:46549429-46549448 | None:intergenic | 20.0% |
| !! | ATAGTAAACTAATATGGAAT+GGG | - | chr4_3:46549526-46549545 | None:intergenic | 20.0% |
| !! | AATAGTAAACTAATATGGAA+TGG | - | chr4_3:46549527-46549546 | None:intergenic | 20.0% |
| !! | TTTACAAAAACAGAAAAATG+GGG | - | chr4_3:46549895-46549914 | None:intergenic | 20.0% |
| !!! | AATTTGAACTTTGTTCATTT+TGG | + | chr4_3:46549915-46549934 | Msa0643520:intron | 20.0% |
| !! | GTTACAAAAACAGATAAATT+GGG | - | chr4_3:46549967-46549986 | None:intergenic | 20.0% |
| !! | TGTTACAAAAACAGATAAAT+TGG | - | chr4_3:46549968-46549987 | None:intergenic | 20.0% |
| !!! | AATTTGAACTTTTTATACCT+TGG | + | chr4_3:46549987-46550006 | Msa0643520:intron | 20.0% |
| !!! | TTTTACGAAAACAGATAAAT+GGG | - | chr4_3:46550317-46550336 | None:intergenic | 20.0% |
| !!! | TTTTTACGAAAACAGATAAA+TGG | - | chr4_3:46550318-46550337 | None:intergenic | 20.0% |
| !! | CATTTAATAATACATACCTT+TGG | - | chr4_3:46550517-46550536 | None:intergenic | 20.0% |
| !! | TCCTTCATATAAAAACATTA+GGG | + | chr4_3:46550810-46550829 | Msa0643520:intron | 20.0% |
| !!! | TTTTTAGTAAGAGACTAAAT+TGG | + | chr4_3:46550850-46550869 | Msa0643520:intron | 20.0% |
| !!! | TTTTAGTAAGAGACTAAATT+GGG | + | chr4_3:46550851-46550870 | Msa0643520:intron | 20.0% |
| !!! | GAAAATAAAAAAGTATTACC+TGG | - | chr4_3:46551053-46551072 | None:intergenic | 20.0% |
| !!! | TGTAATTTCTAGAATCATTT+TGG | + | chr4_3:46551319-46551338 | Msa0643520:intron | 20.0% |
| !! | ATTACACAAATTGAATGATA+TGG | + | chr4_3:46551662-46551681 | Msa0643520:intron | 20.0% |
| !! | AAATTGAATGATATGGAATA+GGG | + | chr4_3:46551669-46551688 | Msa0643520:intron | 20.0% |
| !! | CTTAAATATTTGATATTCCA+AGG | + | chr4_3:46552555-46552574 | Msa0643520:intron | 20.0% |
| !!! | GGTTTTATACTATATATATG+TGG | - | chr4_3:46552784-46552803 | None:intergenic | 20.0% |
| !! | AGTAAAACTTCAAAAATAAG+TGG | - | chr4_3:46553606-46553625 | None:intergenic | 20.0% |
| !!! | TCTGTTTCTTATTGTTAATA+CGG | + | chr4_3:46554495-46554514 | Msa0643520:intron | 20.0% |
| !! | AAAATGTAAACATCATTCTT+GGG | + | chr4_3:46554555-46554574 | Msa0643520:intron | 20.0% |
| !! | ATGAATACAAAGAAAACTAT+AGG | + | chr4_3:46554766-46554785 | Msa0643520:intron | 20.0% |
| !!! | AAGATTTTTAAAGATTGTGT+AGG | - | chr4_3:46555322-46555341 | None:intergenic | 20.0% |
| !! | TGATTTATGATAGAGAATTA+TGG | + | chr4_3:46555424-46555443 | Msa0643520:intron | 20.0% |
| !! | AAAAACATAAATAACTGTAC+TGG | - | chr4_3:46556339-46556358 | None:intergenic | 20.0% |
| !!! | ACCCTTTTTATTATTCAAAA+AGG | - | chr4_3:46556370-46556389 | None:intergenic | 20.0% |
| ! | TGTTGATGTTGTATATGATA+CGG | - | chr4_3:46549633-46549652 | None:intergenic | 25.0% |
| ! | ATTCTTGTTCTAATCATCTT+TGG | - | chr4_3:46549701-46549720 | None:intergenic | 25.0% |
| !!! | TTTCTTTTTCACTAAGGTTA+TGG | - | chr4_3:46550167-46550186 | None:intergenic | 25.0% |
| !!! | CTATCATTTCTTTTTCACTA+AGG | - | chr4_3:46550173-46550192 | None:intergenic | 25.0% |
| ! | TTTACGAAAACAGATAAATG+GGG | - | chr4_3:46550316-46550335 | None:intergenic | 25.0% |
| !! | TCTTCTATTTTCTATCAACT+TGG | + | chr4_3:46550362-46550381 | Msa0643520:intron | 25.0% |
| !! | ATTGCATATCATGCTTTTAA+TGG | + | chr4_3:46550394-46550413 | Msa0643520:intron | 25.0% |
| !! | ATAATTTGTGTGATCAATGT+GGG | - | chr4_3:46550491-46550510 | None:intergenic | 25.0% |
| !! | AATAATTTGTGTGATCAATG+TGG | - | chr4_3:46550492-46550511 | None:intergenic | 25.0% |
| !! | TGGTATTATTTATCTTTTGC+CGG | - | chr4_3:46550613-46550632 | None:intergenic | 25.0% |
| ! | ACAAATTAGTCCATCTATTA+AGG | + | chr4_3:46550662-46550681 | Msa0643520:intron | 25.0% |
| ! | TACGATTAACATACTAACAT+CGG | + | chr4_3:46550735-46550754 | Msa0643520:intron | 25.0% |
| ! | TTCTGTTATAATGAATGATC+CGG | + | chr4_3:46550776-46550795 | Msa0643520:intron | 25.0% |
| ! | GTCCTTCATATAAAAACATT+AGG | + | chr4_3:46550809-46550828 | Msa0643520:intron | 25.0% |
| ! | CCTTCATATAAAAACATTAG+GGG | + | chr4_3:46550811-46550830 | Msa0643520:intron | 25.0% |
| ! | AAATTAGTAAACACCCAATT+TGG | - | chr4_3:46550898-46550917 | None:intergenic | 25.0% |
| !!! | GTTGTGTTTTGATCTAATTT+AGG | + | chr4_3:46550974-46550993 | Msa0643520:intron | 25.0% |
| !! | TAATTTAGGATGTTAACTTG+TGG | + | chr4_3:46550988-46551007 | Msa0643520:intron | 25.0% |
| ! | GATTATATGTATGTGATTCT+AGG | - | chr4_3:46551160-46551179 | None:intergenic | 25.0% |
| ! | CATTGTCTCTTTAATACAAA+CGG | + | chr4_3:46551273-46551292 | Msa0643520:intron | 25.0% |
| !!! | ATTTTGGAATATTGATAACG+TGG | + | chr4_3:46551335-46551354 | Msa0643520:intron | 25.0% |
| ! | TACAATTTCAAAGACCAAAT+TGG | + | chr4_3:46551379-46551398 | Msa0643520:intron | 25.0% |
| ! | AATTTGTGTAATACTGCAAA+AGG | - | chr4_3:46551654-46551673 | None:intergenic | 25.0% |
| ! | CAAATTGAATGATATGGAAT+AGG | + | chr4_3:46551668-46551687 | Msa0643520:intron | 25.0% |
| !!! | AGTATTTTTGTTTCTGTTCA+TGG | - | chr4_3:46552052-46552071 | None:intergenic | 25.0% |
| ! | GAATTACACAACATTAAACT+AGG | - | chr4_3:46552101-46552120 | None:intergenic | 25.0% |
| !! | TATTTTCCAGCTATAAACTA+AGG | - | chr4_3:46553046-46553065 | None:intergenic | 25.0% |
| ! | GTAATAAAATGATTTATCGG+TGG | - | chr4_3:46553111-46553130 | None:intergenic | 25.0% |
| !! | ATATCTAAGATCTGTCTTAA+AGG | + | chr4_3:46553493-46553512 | Msa0643520:intron | 25.0% |
| ! | AAAATAAGTGGAAGATTAAG+AGG | - | chr4_3:46553594-46553613 | None:intergenic | 25.0% |
| !!! | ATTTTGGAAAATTATGCAAC+TGG | - | chr4_3:46553904-46553923 | None:intergenic | 25.0% |
| ! | CCTGAACAAAAAGAAAATAA+TGG | - | chr4_3:46554032-46554051 | None:intergenic | 25.0% |
| !! | CCATTATTTTCTTTTTGTTC+AGG | + | chr4_3:46554029-46554048 | Msa0643520:intron | 25.0% |
| ! | TTTATACAGGTTCATTTCAT+CGG | + | chr4_3:46554197-46554216 | Msa0643520:intron | 25.0% |
| !! | TTCATTGTCAATTGATCTTT+TGG | + | chr4_3:46554277-46554296 | Msa0643520:intron | 25.0% |
| ! | AACAATAAGAAACAGATTTG+AGG | - | chr4_3:46554491-46554510 | None:intergenic | 25.0% |
| ! | GAAAATGTAAACATCATTCT+TGG | + | chr4_3:46554554-46554573 | Msa0643520:intron | 25.0% |
| ! | CCTTATCTTGTCTAATAATA+GGG | - | chr4_3:46554617-46554636 | None:intergenic | 25.0% |
| ! | ACCTTATCTTGTCTAATAAT+AGG | - | chr4_3:46554618-46554637 | None:intergenic | 25.0% |
| ! | TTATTAGACAAGATAAGGTT+AGG | + | chr4_3:46554619-46554638 | Msa0643520:intron | 25.0% |
| !! | CTCAATTCTAGGTAATTTTT+GGG | - | chr4_3:46554875-46554894 | None:intergenic | 25.0% |
| !! | TCTCAATTCTAGGTAATTTT+TGG | - | chr4_3:46554876-46554895 | None:intergenic | 25.0% |
| ! | AAAAATTACCTAGAATTGAG+AGG | + | chr4_3:46554875-46554894 | Msa0643520:intron | 25.0% |
| ! | AAAATTACCTAGAATTGAGA+GGG | + | chr4_3:46554876-46554895 | Msa0643520:intron | 25.0% |
| !!! | ATCAGACAATTTTGAGATTA+AGG | + | chr4_3:46554988-46555007 | Msa0643520:intron | 25.0% |
| !!! | AATTGCAATTTTGATAACAC+CGG | + | chr4_3:46555102-46555121 | Msa0643520:intron | 25.0% |
| ! | AAAATACCAAATTACAAGAG+TGG | - | chr4_3:46555188-46555207 | None:intergenic | 25.0% |
| ! | ATTAACTTTCATGATTTCGA+GGG | - | chr4_3:46555294-46555313 | None:intergenic | 25.0% |
| ! | TATTAACTTTCATGATTTCG+AGG | - | chr4_3:46555295-46555314 | None:intergenic | 25.0% |
| !!! | GGGATTTTAAAAGACTATTT+TGG | - | chr4_3:46555359-46555378 | None:intergenic | 25.0% |
| !!! | TTACAACTTTGTTTTTGTCA+TGG | + | chr4_3:46555669-46555688 | Msa0643520:intron | 25.0% |
| ! | TGAATAGTATGATGCAAAAA+AGG | - | chr4_3:46555834-46555853 | None:intergenic | 25.0% |
| ! | TGATGGAAAAAAAAAAGTTC+AGG | + | chr4_3:46556267-46556286 | Msa0643520:three_prime_UTR | 25.0% |
| !! | GGAATCTATTACATTACTTT+TGG | - | chr4_3:46556315-46556334 | None:intergenic | 25.0% |
| CTACTACTAATTTGAAGGAA+AGG | + | chr4_3:46549401-46549420 | Msa0643520:five_prime_UTR | 30.0% | |
| GTTGATGTTGTATATGATAC+GGG | - | chr4_3:46549632-46549651 | None:intergenic | 30.0% | |
| TCTGAAAAGAGTTGAGAAAA+TGG | - | chr4_3:46549738-46549757 | None:intergenic | 30.0% | |
| ACCAGTTGAATTAAGTCTTA+CGG | - | chr4_3:46550036-46550055 | None:intergenic | 30.0% | |
| AGACTTAATTCAACTGGTTA+AGG | + | chr4_3:46550038-46550057 | Msa0643520:intron | 30.0% | |
| TTGAAATTCAGTGACTTTCA+TGG | + | chr4_3:46550130-46550149 | Msa0643520:intron | 30.0% | |
| ! | CTATTTTCTATCAACTTGGT+TGG | + | chr4_3:46550366-46550385 | Msa0643520:intron | 30.0% |
| TCACACAAATTATTTCCCAA+AGG | + | chr4_3:46550498-46550517 | Msa0643520:CDS | 30.0% | |
| ! | GTATTATTTATCTTTTGCCG+GGG | - | chr4_3:46550611-46550630 | None:intergenic | 30.0% |
| ! | GGTATTATTTATCTTTTGCC+GGG | - | chr4_3:46550612-46550631 | None:intergenic | 30.0% |
| !!! | AGTCTCTGTCATTTTCAAAT+TGG | + | chr4_3:46550637-46550656 | Msa0643520:intron | 30.0% |
| !!! | GTCTCTGTCATTTTCAAATT+GGG | + | chr4_3:46550638-46550657 | Msa0643520:intron | 30.0% |
| !!! | TCTCTGTCATTTTCAAATTG+GGG | + | chr4_3:46550639-46550658 | Msa0643520:intron | 30.0% |
| TCCATCTATTAAGGAGTTAA+AGG | + | chr4_3:46550671-46550690 | Msa0643520:intron | 30.0% | |
| CCATCTATTAAGGAGTTAAA+GGG | + | chr4_3:46550672-46550691 | Msa0643520:intron | 30.0% | |
| GGATCATTCATTATAACAGA+AGG | - | chr4_3:46550777-46550796 | None:intergenic | 30.0% | |
| TCTGTTATAATGAATGATCC+GGG | + | chr4_3:46550777-46550796 | Msa0643520:intron | 30.0% | |
| !! | CCCCTAATGTTTTTATATGA+AGG | - | chr4_3:46550814-46550833 | None:intergenic | 30.0% |
| AAAACATTAGGGGATTAACT+TGG | + | chr4_3:46550821-46550840 | Msa0643520:intron | 30.0% | |
| AAACATTAGGGGATTAACTT+GGG | + | chr4_3:46550822-46550841 | Msa0643520:intron | 30.0% | |
| !! | TGTTAACTTGTGGAAAAGTA+TGG | + | chr4_3:46550998-46551017 | Msa0643520:CDS | 30.0% |
| !! | GTTAACTTGTGGAAAAGTAT+GGG | + | chr4_3:46550999-46551018 | Msa0643520:CDS | 30.0% |
| TAAAGAAAATAAGGGAGACT+TGG | - | chr4_3:46551124-46551143 | None:intergenic | 30.0% | |
| TGATAACAAATCCAAACAGA+AGG | - | chr4_3:46551191-46551210 | None:intergenic | 30.0% | |
| AAGAGACAATGACATTATGT+TGG | - | chr4_3:46551264-46551283 | None:intergenic | 30.0% | |
| !! | ATATTGATAACGTGGATGAT+TGG | + | chr4_3:46551343-46551362 | Msa0643520:intron | 30.0% |
| !! | TATTGATAACGTGGATGATT+GGG | + | chr4_3:46551344-46551363 | Msa0643520:intron | 30.0% |
| GAGTAACTAACTATCCAATT+TGG | - | chr4_3:46551396-46551415 | None:intergenic | 30.0% | |
| GTTAGTTACTCTACTTTACT+TGG | + | chr4_3:46551405-46551424 | Msa0643520:intron | 30.0% | |
| TTACTCTACTTTACTTGGTT+TGG | + | chr4_3:46551410-46551429 | Msa0643520:intron | 30.0% | |
| AGAATGTAGATACTATTTGC+AGG | + | chr4_3:46551589-46551608 | Msa0643520:intron | 30.0% | |
| ATTTCAAATCGTCCTTCTTT+AGG | + | chr4_3:46551698-46551717 | Msa0643520:intron | 30.0% | |
| TAAATCAGAACACCTAAAGA+AGG | - | chr4_3:46551713-46551732 | None:intergenic | 30.0% | |
| CAAATAAGCAGACATAGAAT+TGG | - | chr4_3:46551799-46551818 | None:intergenic | 30.0% | |
| CTTGTATCATTGTATAGCAA+TGG | + | chr4_3:46551850-46551869 | Msa0643520:CDS | 30.0% | |
| TAACCTATGTATCAATCAAC+TGG | + | chr4_3:46551925-46551944 | Msa0643520:CDS | 30.0% | |
| TTACCAGTTGATTGATACAT+AGG | - | chr4_3:46551931-46551950 | None:intergenic | 30.0% | |
| ATCAATCAACTGGTAATTGA+AGG | + | chr4_3:46551935-46551954 | Msa0643520:intron | 30.0% | |
| TCAATCAACTGGTAATTGAA+GGG | + | chr4_3:46551936-46551955 | Msa0643520:intron | 30.0% | |
| ! | CAATTTTTAAACGAGTCTTC+AGG | + | chr4_3:46551988-46552007 | Msa0643520:intron | 30.0% |
| !!! | TTTTTTGTTTAGGTGAGGAA+TGG | + | chr4_3:46552023-46552042 | Msa0643520:intron | 30.0% |
| GAAACAAAAATACTTGCCAA+AGG | + | chr4_3:46552058-46552077 | Msa0643520:CDS | 30.0% | |
| ! | CAACTAGTTATGAGCATTTT+TGG | - | chr4_3:46552192-46552211 | None:intergenic | 30.0% |
| AAAGGAGTTGAAGGAATTAA+AGG | + | chr4_3:46552258-46552277 | Msa0643520:intron | 30.0% | |
| CTATTAATGAGCACAAGAAA+TGG | - | chr4_3:46552378-46552397 | None:intergenic | 30.0% | |
| CTTAACTGTAGACAAACAAA+TGG | - | chr4_3:46552422-46552441 | None:intergenic | 30.0% | |
| AAAACCGGATGTAATAATGT+AGG | + | chr4_3:46552798-46552817 | Msa0643520:intron | 30.0% | |
| TATGCCTACATTATTACATC+CGG | - | chr4_3:46552805-46552824 | None:intergenic | 30.0% | |
| !! | TATCACAAAACTTGTTGTCA+AGG | - | chr4_3:46552972-46552991 | None:intergenic | 30.0% |
| TTGATTCCTTAGTTTATAGC+TGG | + | chr4_3:46553037-46553056 | Msa0643520:intron | 30.0% | |
| TAAAATCAAGTGGTTGGAAA+TGG | - | chr4_3:46553282-46553301 | None:intergenic | 30.0% | |
| ATCTTGTCAGTAAAATCAAG+TGG | - | chr4_3:46553292-46553311 | None:intergenic | 30.0% | |
| ! | ACTGACAAGATAGAATTTTG+TGG | + | chr4_3:46553301-46553320 | Msa0643520:intron | 30.0% |
| ! | CTGACAAGATAGAATTTTGT+GGG | + | chr4_3:46553302-46553321 | Msa0643520:intron | 30.0% |
| ! | TAAGAGAGTAATTTTGCATC+TGG | + | chr4_3:46553524-46553543 | Msa0643520:intron | 30.0% |
| ! | AAATAAACCCTTAATTTGGG+AGG | - | chr4_3:46553639-46553658 | None:intergenic | 30.0% |
| ! | ATAGTCTCACAACAAACTTT+TGG | - | chr4_3:46553683-46553702 | None:intergenic | 30.0% |
| ! | ATGTGTCAATCTAGTGATTT+TGG | - | chr4_3:46553920-46553939 | None:intergenic | 30.0% |
| GATTCACCATACAATACAAA+GGG | - | chr4_3:46554253-46554272 | None:intergenic | 30.0% | |
| AGATTCACCATACAATACAA+AGG | - | chr4_3:46554254-46554273 | None:intergenic | 30.0% | |
| !! | TCAATTGATCTTTTGGTTAC+AGG | + | chr4_3:46554284-46554303 | Msa0643520:intron | 30.0% |
| !! | CAATTGATCTTTTGGTTACA+GGG | + | chr4_3:46554285-46554304 | Msa0643520:intron | 30.0% |
| !! | AATTGATCTTTTGGTTACAG+GGG | + | chr4_3:46554286-46554305 | Msa0643520:intron | 30.0% |
| ATACATCTTTACAGTCTTCA+CGG | + | chr4_3:46554325-46554344 | Msa0643520:CDS | 30.0% | |
| TCGATAATGTTCTTCATTTC+AGG | + | chr4_3:46554405-46554424 | Msa0643520:intron | 30.0% | |
| AATAAGAAACAGATTTGAGG+AGG | - | chr4_3:46554488-46554507 | None:intergenic | 30.0% | |
| CCCTATTATTAGACAAGATA+AGG | + | chr4_3:46554614-46554633 | Msa0643520:intron | 30.0% | |
| CTTCTTAGTATGGAATCAAA+AGG | - | chr4_3:46554707-46554726 | None:intergenic | 30.0% | |
| !! | GAATGAATGTTTTCAAGATC+AGG | + | chr4_3:46554791-46554810 | Msa0643520:intron | 30.0% |
| ! | AGGGTATCATGATCATAAAA+AGG | + | chr4_3:46554835-46554854 | Msa0643520:intron | 30.0% |
| !!! | ATTCTAGGTAATTTTTGGGT+AGG | - | chr4_3:46554871-46554890 | None:intergenic | 30.0% |
| AAATTACCTAGAATTGAGAG+GGG | + | chr4_3:46554877-46554896 | Msa0643520:intron | 30.0% | |
| TAAAACGTAGAATCGTAACA+AGG | + | chr4_3:46554912-46554931 | Msa0643520:intron | 30.0% | |
| AAAGAAGAAGAATGGTAACA+AGG | + | chr4_3:46554957-46554976 | Msa0643520:intron | 30.0% | |
| !!! | CAATTTTGAGATTAAGGTAC+CGG | + | chr4_3:46554994-46555013 | Msa0643520:intron | 30.0% |
| !! | ATTGCAATTTTGATAACACC+GGG | + | chr4_3:46555103-46555122 | Msa0643520:intron | 30.0% |
| TCTTTCTTAATAATTCTCCC+CGG | - | chr4_3:46555124-46555143 | None:intergenic | 30.0% | |
| ! | TTTTTGTGTTTTTCCCCTTT+CGG | + | chr4_3:46555568-46555587 | Msa0643520:intron | 30.0% |
| TTGTGTTACATCATGCAAAT+TGG | - | chr4_3:46555615-46555634 | None:intergenic | 30.0% | |
| TTGGCTCATTATAATTGTAG+TGG | + | chr4_3:46555772-46555791 | Msa0643520:intron | 30.0% | |
| TGGCTCATTATAATTGTAGT+GGG | + | chr4_3:46555773-46555792 | Msa0643520:intron | 30.0% | |
| AAATAGTAGAGTTGTTGCAT+TGG | - | chr4_3:46555810-46555829 | None:intergenic | 30.0% | |
| ATACAATGTTTAGGTGGAAA+CGG | + | chr4_3:46555949-46555968 | Msa0643520:CDS | 30.0% | |
| GAGATCAGAAGAATGATTAT+TGG | + | chr4_3:46556045-46556064 | Msa0643520:CDS | 30.0% | |
| AAGCACATACAGATCTAATA+TGG | - | chr4_3:46556199-46556218 | None:intergenic | 30.0% | |
| ! | AGGTCTGAGATTCAATAATT+TGG | + | chr4_3:46556287-46556306 | Msa0643520:three_prime_UTR | 30.0% |
| AACATAAATAACTGTACTGG+AGG | - | chr4_3:46556336-46556355 | None:intergenic | 30.0% | |
| CGCTACTACTACTAATTTGA+AGG | + | chr4_3:46549396-46549415 | Msa0643520:five_prime_UTR | 35.0% | |
| TAGCTGAATCAGATAGTAGT+AGG | - | chr4_3:46549448-46549467 | None:intergenic | 35.0% | |
| ! | ATGGAATGGGTATAGTGTTT+TGG | - | chr4_3:46549513-46549532 | None:intergenic | 35.0% |
| TGTTGTATATGATACGGGTA+TGG | - | chr4_3:46549627-46549646 | None:intergenic | 35.0% | |
| GTTCTAATCATCTTTGGCAA+CGG | - | chr4_3:46549695-46549714 | None:intergenic | 35.0% | |
| !! | GTCAATCTCATTTTTGACCA+AGG | - | chr4_3:46550007-46550026 | None:intergenic | 35.0% |
| TGAATTAAGTCTTACGGACT+GGG | - | chr4_3:46550030-46550049 | None:intergenic | 35.0% | |
| TTGAATTAAGTCTTACGGAC+TGG | - | chr4_3:46550031-46550050 | None:intergenic | 35.0% | |
| TCCGTAAGACTTAATTCAAC+TGG | + | chr4_3:46550032-46550051 | Msa0643520:intron | 35.0% | |
| ATCGAGATCCACTACATTTA+AGG | - | chr4_3:46550238-46550257 | None:intergenic | 35.0% | |
| ! | GAAAATGACAGAGACTAGTT+TGG | - | chr4_3:46550633-46550652 | None:intergenic | 35.0% |
| CCCTTTAACTCCTTAATAGA+TGG | - | chr4_3:46550675-46550694 | None:intergenic | 35.0% | |
| ! | TAGTATTTTTCTCCCTTGTC+TGG | - | chr4_3:46550711-46550730 | None:intergenic | 35.0% |
| CTGTTATAATGAATGATCCG+GGG | + | chr4_3:46550778-46550797 | Msa0643520:intron | 35.0% | |
| AAAGTTGTGAGAGACCAAAT+TGG | + | chr4_3:46550881-46550900 | Msa0643520:intron | 35.0% | |
| AAGTTGTGAGAGACCAAATT+GGG | + | chr4_3:46550882-46550901 | Msa0643520:intron | 35.0% | |
| CATAGTGTAACTGAATATGC+TGG | + | chr4_3:46550952-46550971 | Msa0643520:intron | 35.0% | |
| ATGGGAGAATTTAATCTCCA+TGG | + | chr4_3:46551017-46551036 | Msa0643520:CDS | 35.0% | |
| TGGGAGAATTTAATCTCCAT+GGG | + | chr4_3:46551018-46551037 | Msa0643520:CDS | 35.0% | |
| ATCAAGTTCATCCTTCTGTT+TGG | + | chr4_3:46551177-46551196 | Msa0643520:intron | 35.0% | |
| ACATTATGTTGGCAATGCAT+AGG | - | chr4_3:46551253-46551272 | None:intergenic | 35.0% | |
| CACTATCTCATAGAGTATAC+AGG | - | chr4_3:46551519-46551538 | None:intergenic | 35.0% | |
| !!! | TGCTGCCTTCTTTTTTGTTT+AGG | + | chr4_3:46552013-46552032 | Msa0643520:intron | 35.0% |
| CCTCACCTAAACAAAAAAGA+AGG | - | chr4_3:46552021-46552040 | None:intergenic | 35.0% | |
| !!! | CCTTCTTTTTTGTTTAGGTG+AGG | + | chr4_3:46552018-46552037 | Msa0643520:intron | 35.0% |
| CATTGCACATATCAGCAATA+GGG | - | chr4_3:46552156-46552175 | None:intergenic | 35.0% | |
| ACATTGCACATATCAGCAAT+AGG | - | chr4_3:46552157-46552176 | None:intergenic | 35.0% | |
| CATAACTAGTTGTAGCTTTC+AGG | + | chr4_3:46552200-46552219 | Msa0643520:intron | 35.0% | |
| AATGAGCACAAGAAATGGTT+GGG | - | chr4_3:46552373-46552392 | None:intergenic | 35.0% | |
| TAATGAGCACAAGAAATGGT+TGG | - | chr4_3:46552374-46552393 | None:intergenic | 35.0% | |
| !! | TCAACTTTGAAGCTTATCTC+TGG | + | chr4_3:46552465-46552484 | Msa0643520:intron | 35.0% |
| !! | CAACTTTGAAGCTTATCTCT+GGG | + | chr4_3:46552466-46552485 | Msa0643520:intron | 35.0% |
| !! | AACTTTGAAGCTTATCTCTG+GGG | + | chr4_3:46552467-46552486 | Msa0643520:intron | 35.0% |
| GCAGAAAAGACAAATTCACT+AGG | - | chr4_3:46552587-46552606 | None:intergenic | 35.0% | |
| AACAAGATGTGGTGTACTAA+TGG | + | chr4_3:46552677-46552696 | Msa0643520:CDS | 35.0% | |
| ACAAGATGTGGTGTACTAAT+GGG | + | chr4_3:46552678-46552697 | Msa0643520:CDS | 35.0% | |
| CATACTAATGTTTGAGCAGT+TGG | - | chr4_3:46552704-46552723 | None:intergenic | 35.0% | |
| AAACATGCTTAGCATGGAAA+TGG | - | chr4_3:46552758-46552777 | None:intergenic | 35.0% | |
| TGATTGTGTTGAATTGCATC+AGG | + | chr4_3:46552856-46552875 | Msa0643520:intron | 35.0% | |
| ACTGCATTTATCATCGAGAA+GGG | + | chr4_3:46552923-46552942 | Msa0643520:CDS | 35.0% | |
| AGCTGGAAAATATCCTTCTA+TGG | + | chr4_3:46553054-46553073 | Msa0643520:intron | 35.0% | |
| TTCAAGTACACTTCCATAGA+AGG | - | chr4_3:46553070-46553089 | None:intergenic | 35.0% | |
| ! | GACAAACATCATTGATTGTC+AGG | - | chr4_3:46553164-46553183 | None:intergenic | 35.0% |
| CCCTAGTTTATCCAATTTCT+GGG | - | chr4_3:46553203-46553222 | None:intergenic | 35.0% | |
| CCCAGAAATTGGATAAACTA+GGG | + | chr4_3:46553200-46553219 | Msa0643520:CDS | 35.0% | |
| TCCCTAGTTTATCCAATTTC+TGG | - | chr4_3:46553204-46553223 | None:intergenic | 35.0% | |
| TGTCAGTAAAATCAAGTGGT+TGG | - | chr4_3:46553288-46553307 | None:intergenic | 35.0% | |
| !! | ATTATTTGGTAGTGCTCGTT+TGG | + | chr4_3:46553447-46553466 | Msa0643520:intron | 35.0% |
| ! | ACTCTTTTCCTCCCAAATTA+AGG | + | chr4_3:46553628-46553647 | Msa0643520:intron | 35.0% |
| ! | CTCTTTTCCTCCCAAATTAA+GGG | + | chr4_3:46553629-46553648 | Msa0643520:intron | 35.0% |
| GGAAAATTATGCAACTGGAA+AGG | - | chr4_3:46553899-46553918 | None:intergenic | 35.0% | |
| !! | AAAACCACTTTTGCTTTGTC+AGG | + | chr4_3:46553984-46554003 | Msa0643520:intron | 35.0% |
| ACATGACTGCATAATACCAA+GGG | - | chr4_3:46554111-46554130 | None:intergenic | 35.0% | |
| ATAAACTGAAACTCCCCAAT+AGG | - | chr4_3:46554182-46554201 | None:intergenic | 35.0% | |
| !! | TCCTGCTAAATTAGTTTGCA+CGG | + | chr4_3:46554379-46554398 | Msa0643520:intron | 35.0% |
| CTTATGTGTATTCTGTAGCT+CGG | + | chr4_3:46554429-46554448 | Msa0643520:CDS | 35.0% | |
| TTATGTGTATTCTGTAGCTC+GGG | + | chr4_3:46554430-46554449 | Msa0643520:CDS | 35.0% | |
| ATGATAGCATTAGAGAGAGT+TGG | + | chr4_3:46554643-46554662 | Msa0643520:intron | 35.0% | |
| !! | AGTTGGTAGTAGCACAAATT+AGG | + | chr4_3:46554660-46554679 | Msa0643520:intron | 35.0% |
| !! | GTTGGTAGTAGCACAAATTA+GGG | + | chr4_3:46554661-46554680 | Msa0643520:intron | 35.0% |
| CTGATCTACTCTTCTTAGTA+TGG | - | chr4_3:46554717-46554736 | None:intergenic | 35.0% | |
| ACTAAGAAGAGTAGATCAGA+TGG | + | chr4_3:46554718-46554737 | Msa0643520:intron | 35.0% | |
| AATTACCTAGAATTGAGAGG+GGG | + | chr4_3:46554878-46554897 | Msa0643520:intron | 35.0% | |
| TAAAAGACCGCAATTGAAAC+CGG | - | chr4_3:46555016-46555035 | None:intergenic | 35.0% | |
| ! | CGTAAAATCGTGCGATTTTA+CGG | + | chr4_3:46555075-46555094 | Msa0643520:intron | 35.0% |
| !! | TTGCAATTTTGATAACACCG+GGG | + | chr4_3:46555104-46555123 | Msa0643520:intron | 35.0% |
| AGTCATCCACTCTTGTAATT+TGG | + | chr4_3:46555179-46555198 | Msa0643520:intron | 35.0% | |
| !! | AAACCATTGATTTCTAAGGG+GGG | - | chr4_3:46555393-46555412 | None:intergenic | 35.0% |
| !! | CAAACCATTGATTTCTAAGG+GGG | - | chr4_3:46555394-46555413 | None:intergenic | 35.0% |
| !! | CCAAACCATTGATTTCTAAG+GGG | - | chr4_3:46555395-46555414 | None:intergenic | 35.0% |
| !! | GCCAAACCATTGATTTCTAA+GGG | - | chr4_3:46555396-46555415 | None:intergenic | 35.0% |
| !! | AGCCAAACCATTGATTTCTA+AGG | - | chr4_3:46555397-46555416 | None:intergenic | 35.0% |
| CACGCAATGCATAAGAAATA+TGG | - | chr4_3:46555524-46555543 | None:intergenic | 35.0% | |
| ACAAAATCAACAAGCCGAAA+GGG | - | chr4_3:46555585-46555604 | None:intergenic | 35.0% | |
| AACAAAATCAACAAGCCGAA+AGG | - | chr4_3:46555586-46555605 | None:intergenic | 35.0% | |
| !!! | CGGCTTGTTGATTTTGTTTT+TGG | + | chr4_3:46555588-46555607 | Msa0643520:intron | 35.0% |
| ATAATGAGCCAACATGATCT+TGG | - | chr4_3:46555764-46555783 | None:intergenic | 35.0% | |
| !! | TTATAATTGTAGTGGGCTAG+TGG | + | chr4_3:46555780-46555799 | Msa0643520:intron | 35.0% |
| ! | TCTCATGTGCTACTAATTTC+AGG | + | chr4_3:46555867-46555886 | Msa0643520:intron | 35.0% |
| TACTAATTTCAGGATTGTGC+TGG | + | chr4_3:46555877-46555896 | Msa0643520:intron | 35.0% | |
| TTGAAGCAAATCATTCCTCT+TGG | + | chr4_3:46556237-46556256 | Msa0643520:three_prime_UTR | 35.0% | |
| TTCCTCTTGGAAAATGATGA+TGG | + | chr4_3:46556250-46556269 | Msa0643520:three_prime_UTR | 35.0% | |
| ! | TTCCATCATCATTTTCCAAG+AGG | - | chr4_3:46556255-46556274 | None:intergenic | 35.0% |
| TACAGTACCAACAATAGGTA+AGG | - | chr4_3:46556416-46556435 | None:intergenic | 35.0% | |
| ACCTATTGTTGGTACTGTAT+TGG | + | chr4_3:46556417-46556436 | Msa0643520:three_prime_UTR | 35.0% | |
| TCCAATACAGTACCAACAAT+AGG | - | chr4_3:46556421-46556440 | None:intergenic | 35.0% | |
| !!! | GTGTTTTGGCAGTTGAGATA+AGG | - | chr4_3:46549499-46549518 | None:intergenic | 40.0% |
| ACTTAGCTTAGCTTAGCTGT+TGG | - | chr4_3:46549656-46549675 | None:intergenic | 40.0% | |
| ATAGCGAGGATGAGAAGAAT+TGG | - | chr4_3:46549762-46549781 | None:intergenic | 40.0% | |
| ! | GAGGAATGAAGTAGTGGAAA+AGG | - | chr4_3:46549792-46549811 | None:intergenic | 40.0% |
| ATCGAAGAGGAATGAAGTAG+TGG | - | chr4_3:46549798-46549817 | None:intergenic | 40.0% | |
| !! | GGGGTTCAATCATTTTGATC+AGG | - | chr4_3:46549876-46549895 | None:intergenic | 40.0% |
| ! | GAATTAAGTCTTACGGACTG+GGG | - | chr4_3:46550029-46550048 | None:intergenic | 40.0% |
| TGGTTAAGGATTGTCAGAGT+TGG | + | chr4_3:46550052-46550071 | Msa0643520:intron | 40.0% | |
| ATCGGAGTTCAAACTGGTTA+AGG | + | chr4_3:46550083-46550102 | Msa0643520:intron | 40.0% | |
| TTTGTGCAAGTGAGTTTCAG+AGG | + | chr4_3:46550107-46550126 | Msa0643520:intron | 40.0% | |
| AATTCAGTGACTTTCATGGC+AGG | + | chr4_3:46550134-46550153 | Msa0643520:intron | 40.0% | |
| ! | AGATCCACTACATTTAAGGC+GGG | - | chr4_3:46550234-46550253 | None:intergenic | 40.0% |
| GAGATCCACTACATTTAAGG+CGG | - | chr4_3:46550235-46550254 | None:intergenic | 40.0% | |
| ! | TTTTGAGCGAACACCCAATT+TGG | + | chr4_3:46550553-46550572 | Msa0643520:intron | 40.0% |
| AAACTGTCAGGGACCAAATT+GGG | - | chr4_3:46550569-46550588 | None:intergenic | 40.0% | |
| AAAACTGTCAGGGACCAAAT+TGG | - | chr4_3:46550570-46550589 | None:intergenic | 40.0% | |
| ATTAAGGAGTTAAAGGGCCA+AGG | + | chr4_3:46550678-46550697 | Msa0643520:intron | 40.0% | |
| CAAGGTTCAAATCCAGACAA+GGG | + | chr4_3:46550696-46550715 | Msa0643520:intron | 40.0% | |
| ATGAAGGACAAATTAGTCCC+CGG | - | chr4_3:46550798-46550817 | None:intergenic | 40.0% | |
| CTACAATTCCATGACCAACA+TGG | - | chr4_3:46551089-46551108 | None:intergenic | 40.0% | |
| CATGTTGGTCATGGAATTGT+AGG | + | chr4_3:46551087-46551106 | Msa0643520:intron | 40.0% | |
| CTATGTCTGCTTATTTGCAG+AGG | + | chr4_3:46551802-46551821 | Msa0643520:intron | 40.0% | |
| TGCTTATTTGCAGAGGAGTA+TGG | + | chr4_3:46551809-46551828 | Msa0643520:intron | 40.0% | |
| ! | TTATTTGCAGAGGAGTATGG+AGG | + | chr4_3:46551812-46551831 | Msa0643520:intron | 40.0% |
| ! | TATTTGCAGAGGAGTATGGA+GGG | + | chr4_3:46551813-46551832 | Msa0643520:intron | 40.0% |
| !! | GGATCTGTTGGTCTTTCTTA+TGG | + | chr4_3:46551893-46551912 | Msa0643520:CDS | 40.0% |
| !! | AAACTAGAGTGTCGAACCTT+TGG | - | chr4_3:46552077-46552096 | None:intergenic | 40.0% |
| AACTAGTTGTAGCTTTCAGG+TGG | + | chr4_3:46552203-46552222 | Msa0643520:intron | 40.0% | |
| !! | AGCTCAATTGGTTTGAGCTA+AGG | + | chr4_3:46552232-46552251 | Msa0643520:intron | 40.0% |
| !! | GCTCAATTGGTTTGAGCTAA+GGG | + | chr4_3:46552233-46552252 | Msa0643520:intron | 40.0% |
| TGGTTTGAGCTAAGGGTTAA+AGG | + | chr4_3:46552240-46552259 | Msa0643520:intron | 40.0% | |
| CTAAGGGTTAAAGGAGTTGA+AGG | + | chr4_3:46552249-46552268 | Msa0643520:intron | 40.0% | |
| AAGGACTAGATTTCAAACCC+TGG | + | chr4_3:46552277-46552296 | Msa0643520:intron | 40.0% | |
| TAGATTTCAAACCCTGGTGA+AGG | + | chr4_3:46552283-46552302 | Msa0643520:intron | 40.0% | |
| ! | CAGTATTTTCTCCTTCACCA+GGG | - | chr4_3:46552297-46552316 | None:intergenic | 40.0% |
| ! | TCAGTATTTTCTCCTTCACC+AGG | - | chr4_3:46552298-46552317 | None:intergenic | 40.0% |
| AATTCACTAGGCTAAGTCCT+TGG | - | chr4_3:46552575-46552594 | None:intergenic | 40.0% | |
| ! | GAATTTGTCTTTTCTGCAGC+TGG | + | chr4_3:46552590-46552609 | Msa0643520:intron | 40.0% |
| GATGGGGGATATGTACTTAA+CGG | + | chr4_3:46552653-46552672 | Msa0643520:CDS | 40.0% | |
| ATGGGGGATATGTACTTAAC+GGG | + | chr4_3:46552654-46552673 | Msa0643520:CDS | 40.0% | |
| TACTTAACGGGAACAAGATG+TGG | + | chr4_3:46552666-46552685 | Msa0643520:CDS | 40.0% | |
| CACTGCATTTATCATCGAGA+AGG | + | chr4_3:46552922-46552941 | Msa0643520:CDS | 40.0% | |
| AAGGTTCAGTACAATTACCC+AGG | - | chr4_3:46552953-46552972 | None:intergenic | 40.0% | |
| ATTCAGTACTGCCCAGAAAT+TGG | + | chr4_3:46553189-46553208 | Msa0643520:CDS | 40.0% | |
| GCCCAGAAATTGGATAAACT+AGG | + | chr4_3:46553199-46553218 | Msa0643520:CDS | 40.0% | |
| ! | CTTCGAGAATTGCTTTGTTC+CGG | + | chr4_3:46553340-46553359 | Msa0643520:CDS | 40.0% |
| AAGCTGATATGATGCAAGAG+AGG | - | chr4_3:46553726-46553745 | None:intergenic | 40.0% | |
| CATGACTGCATAATACCAAG+GGG | - | chr4_3:46554110-46554129 | None:intergenic | 40.0% | |
| GACATGACTGCATAATACCA+AGG | - | chr4_3:46554112-46554131 | None:intergenic | 40.0% | |
| CTCTTTGTCGAACATAAGGA+AGG | - | chr4_3:46554145-46554164 | None:intergenic | 40.0% | |
| TGCTCTCTTTGTCGAACATA+AGG | - | chr4_3:46554149-46554168 | None:intergenic | 40.0% | |
| TGGGGAGTTTCAGTTTATAC+AGG | + | chr4_3:46554184-46554203 | Msa0643520:CDS | 40.0% | |
| ATCGTGCCCTTTGTATTGTA+TGG | + | chr4_3:46554244-46554263 | Msa0643520:intron | 40.0% | |
| GGTATGAGATTCTAATGCCA+TGG | + | chr4_3:46554346-46554365 | Msa0643520:intron | 40.0% | |
| GTAGCACAAATTAGGGAGTT+TGG | + | chr4_3:46554668-46554687 | Msa0643520:intron | 40.0% | |
| AAGAAGAGTAGATCAGATGG+AGG | + | chr4_3:46554721-46554740 | Msa0643520:intron | 40.0% | |
| AGAAGAGTAGATCAGATGGA+GGG | + | chr4_3:46554722-46554741 | Msa0643520:intron | 40.0% | |
| TCAAGATCAGGATCTTGCTT+AGG | + | chr4_3:46554803-46554822 | Msa0643520:intron | 40.0% | |
| ATCAGGATCTTGCTTAGGAT+TGG | + | chr4_3:46554808-46554827 | Msa0643520:intron | 40.0% | |
| !! | TAAGGTACCGGTTTCAATTG+CGG | + | chr4_3:46555006-46555025 | Msa0643520:intron | 40.0% |
| AAACGATCTTACTCGTTCCA+TGG | + | chr4_3:46555043-46555062 | Msa0643520:intron | 40.0% | |
| AACGATCTTACTCGTTCCAT+GGG | + | chr4_3:46555044-46555063 | Msa0643520:intron | 40.0% | |
| CCCCTTAGAAATCAATGGTT+TGG | + | chr4_3:46555392-46555411 | Msa0643520:intron | 40.0% | |
| CAAAATCAACAAGCCGAAAG+GGG | - | chr4_3:46555584-46555603 | None:intergenic | 40.0% | |
| AACACAAGTACAGTGTGTAG+TGG | + | chr4_3:46555628-46555647 | Msa0643520:intron | 40.0% | |
| AACTTGAGCCAAGATCATGT+TGG | + | chr4_3:46555753-46555772 | Msa0643520:intron | 40.0% | |
| TTGCAGGCGATACAATGTTT+AGG | + | chr4_3:46555940-46555959 | Msa0643520:CDS | 40.0% | |
| TATGTGAACGAGTATCCAAC+CGG | + | chr4_3:46555973-46555992 | Msa0643520:CDS | 40.0% | |
| TCTTCTGATCTCACTTGTTC+CGG | - | chr4_3:46556037-46556056 | None:intergenic | 40.0% | |
| TATTGGACGTGATCTCTTCA+AGG | + | chr4_3:46556062-46556081 | Msa0643520:CDS | 40.0% | |
| !! | TATTCCCCTTGGATTTTGAC+TGG | + | chr4_3:46556098-46556117 | Msa0643520:three_prime_UTR | 40.0% |
| AGTTCCAGTCAAAATCCAAG+GGG | - | chr4_3:46556105-46556124 | None:intergenic | 40.0% | |
| CAGTTCCAGTCAAAATCCAA+GGG | - | chr4_3:46556106-46556125 | None:intergenic | 40.0% | |
| TCAGTTCCAGTCAAAATCCA+AGG | - | chr4_3:46556107-46556126 | None:intergenic | 40.0% | |
| TTACAAAGGAATCATCTCCG+AGG | - | chr4_3:46556133-46556152 | None:intergenic | 40.0% | |
| GGCAGTTGAGATAAGGATGA+AGG | - | chr4_3:46549492-46549511 | None:intergenic | 45.0% | |
| GTATCTGAGTGTCATCGAAG+AGG | - | chr4_3:46549811-46549830 | None:intergenic | 45.0% | |
| CTTCGATGACACTCAGATAC+AGG | + | chr4_3:46549811-46549830 | Msa0643520:CDS | 45.0% | |
| TCAGGCTAGTAGTAGCAGTA+GGG | - | chr4_3:46549858-46549877 | None:intergenic | 45.0% | |
| ATCAGGCTAGTAGTAGCAGT+AGG | - | chr4_3:46549859-46549878 | None:intergenic | 45.0% | |
| TCAGAGTTGGATGCCTTCAT+CGG | + | chr4_3:46550065-46550084 | Msa0643520:intron | 45.0% | |
| ACCAGTTTGAACTCCGATGA+AGG | - | chr4_3:46550081-46550100 | None:intergenic | 45.0% | |
| CTTTCCCGCCTTAAATGTAG+TGG | + | chr4_3:46550227-46550246 | Msa0643520:intron | 45.0% | |
| ATCTCGATCCGAGTTTCAGA+TGG | + | chr4_3:46550250-46550269 | Msa0643520:intron | 45.0% | |
| ! | GGCTAACACCATCTGAAACT+CGG | - | chr4_3:46550261-46550280 | None:intergenic | 45.0% |
| ! | ATCAATGTGGGAAGCATGAG+GGG | - | chr4_3:46550479-46550498 | None:intergenic | 45.0% |
| ! | GATCAATGTGGGAAGCATGA+GGG | - | chr4_3:46550480-46550499 | None:intergenic | 45.0% |
| ! | TGATCAATGTGGGAAGCATG+AGG | - | chr4_3:46550481-46550500 | None:intergenic | 45.0% |
| CCTTGTCTGGATTTGAACCT+TGG | - | chr4_3:46550698-46550717 | None:intergenic | 45.0% | |
| CCAAGGTTCAAATCCAGACA+AGG | + | chr4_3:46550695-46550714 | Msa0643520:intron | 45.0% | |
| CACATATCAGCAATAGGGCA+AGG | - | chr4_3:46552151-46552170 | None:intergenic | 45.0% | |
| ! | AGTTGTAGCTTTCAGGTGGT+TGG | + | chr4_3:46552207-46552226 | Msa0643520:intron | 45.0% |
| ! | GTTGTAGCTTTCAGGTGGTT+GGG | + | chr4_3:46552208-46552227 | Msa0643520:intron | 45.0% |
| ! | CTTATCTCTGGGGATCATGT+GGG | + | chr4_3:46552477-46552496 | Msa0643520:CDS | 45.0% |
| TGCAAAGCTGATCGTGTAGA+TGG | + | chr4_3:46552635-46552654 | Msa0643520:CDS | 45.0% | |
| GCAAAGCTGATCGTGTAGAT+GGG | + | chr4_3:46552636-46552655 | Msa0643520:CDS | 45.0% | |
| CAAAGCTGATCGTGTAGATG+GGG | + | chr4_3:46552637-46552656 | Msa0643520:CDS | 45.0% | |
| AAAGCTGATCGTGTAGATGG+GGG | + | chr4_3:46552638-46552657 | Msa0643520:CDS | 45.0% | |
| TGCTTAGCATGGAAATGGCA+TGG | - | chr4_3:46552753-46552772 | None:intergenic | 45.0% | |
| TGGGACAAACATGCTTAGCA+TGG | - | chr4_3:46552764-46552783 | None:intergenic | 45.0% | |
| CAAAAACAGACGCAACAGCA+GGG | + | chr4_3:46552888-46552907 | Msa0643520:CDS | 45.0% | |
| TTGGATAAACTAGGGATGCG+AGG | + | chr4_3:46553208-46553227 | Msa0643520:CDS | 45.0% | |
| AGCCACTCACTAAGAACGTA+AGG | + | chr4_3:46553796-46553815 | Msa0643520:intron | 45.0% | |
| GTCCTTACGTTCTTAGTGAG+TGG | - | chr4_3:46553801-46553820 | None:intergenic | 45.0% | |
| GACACCTGACAAAGCAAAAG+TGG | - | chr4_3:46553991-46554010 | None:intergenic | 45.0% | |
| GGAGTCTATGTCATGATGTC+TGG | + | chr4_3:46554050-46554069 | Msa0643520:intron | 45.0% | |
| CTATGTCATGATGTCTGGAC+TGG | + | chr4_3:46554055-46554074 | Msa0643520:CDS | 45.0% | |
| ! | CATGATGTCTGGACTGGATT+TGG | + | chr4_3:46554061-46554080 | Msa0643520:CDS | 45.0% |
| ! | TGTCTGGACTGGATTTGGAA+AGG | + | chr4_3:46554066-46554085 | Msa0643520:CDS | 45.0% |
| !!! | GAAAGGCTTGTTTTAGCAGC+CGG | + | chr4_3:46554083-46554102 | Msa0643520:CDS | 45.0% |
| GTTCGACAAAGAGAGCAGTT+CGG | + | chr4_3:46554152-46554171 | Msa0643520:CDS | 45.0% | |
| AGCAGGAGAAAATAGCACCA+TGG | - | chr4_3:46554366-46554385 | None:intergenic | 45.0% | |
| GCCGTGCAAACTAATTTAGC+AGG | - | chr4_3:46554383-46554402 | None:intergenic | 45.0% | |
| CAACGGAAAAGTTGACCCAA+AGG | + | chr4_3:46554460-46554479 | Msa0643520:CDS | 45.0% | |
| !! | AGATTTGAGGAGGCACCTTT+GGG | - | chr4_3:46554478-46554497 | None:intergenic | 45.0% |
| !! | TGGAGGGTATCCTAATCACT+AGG | + | chr4_3:46554738-46554757 | Msa0643520:intron | 45.0% |
| !! | GGAGGGTATCCTAATCACTA+GGG | + | chr4_3:46554739-46554758 | Msa0643520:intron | 45.0% |
| !! | GAGGGTATCCTAATCACTAG+GGG | + | chr4_3:46554740-46554759 | Msa0643520:intron | 45.0% |
| TTCATCAGCCCCTAGTGATT+AGG | - | chr4_3:46554751-46554770 | None:intergenic | 45.0% | |
| ! | TCTTGCTTAGGATTGGCAAG+AGG | + | chr4_3:46554815-46554834 | Msa0643520:intron | 45.0% |
| ! | CTTGCTTAGGATTGGCAAGA+GGG | + | chr4_3:46554816-46554835 | Msa0643520:intron | 45.0% |
| ! | TAAGGGGGGTGTATTGGATT+GGG | - | chr4_3:46555379-46555398 | None:intergenic | 45.0% |
| ! | GATTTCTAAGGGGGGTGTAT+TGG | - | chr4_3:46555385-46555404 | None:intergenic | 45.0% |
| ACACCCCCCTTAGAAATCAA+TGG | + | chr4_3:46555387-46555406 | Msa0643520:intron | 45.0% | |
| ACTAGGTGGAGTCAGATACA+TGG | - | chr4_3:46555461-46555480 | None:intergenic | 45.0% | |
| ATGTATCTGACTCCACCTAG+TGG | + | chr4_3:46555460-46555479 | Msa0643520:intron | 45.0% | |
| TGTATCTGACTCCACCTAGT+GGG | + | chr4_3:46555461-46555480 | Msa0643520:intron | 45.0% | |
| CAACCAAGATTTGTCCCACT+AGG | - | chr4_3:46555478-46555497 | None:intergenic | 45.0% | |
| GGGACAAATCTTGGTTGTTG+TGG | + | chr4_3:46555481-46555500 | Msa0643520:intron | 45.0% | |
| ! | AGCAACACAAGTTGCTTTGC+AGG | + | chr4_3:46555924-46555943 | Msa0643520:CDS | 45.0% |
| CAGGCGATACAATGTTTAGG+TGG | + | chr4_3:46555943-46555962 | Msa0643520:CDS | 45.0% | |
| CAATGACATGCTATTCCCCT+TGG | + | chr4_3:46556087-46556106 | Msa0643520:exon | 45.0% | |
| TGCAGTGCCTTACCTATTGT+TGG | + | chr4_3:46556406-46556425 | Msa0643520:three_prime_UTR | 45.0% | |
| AGGCTAGTAGTAGCAGTAGG+GGG | - | chr4_3:46549856-46549875 | None:intergenic | 50.0% | |
| CAGGCTAGTAGTAGCAGTAG+GGG | - | chr4_3:46549857-46549876 | None:intergenic | 50.0% | |
| GCCTTCATCGGAGTTCAAAC+TGG | + | chr4_3:46550077-46550096 | Msa0643520:intron | 50.0% | |
| GAGCAGCGAGAAAACTGTCA+GGG | - | chr4_3:46550580-46550599 | None:intergenic | 50.0% | |
| TGAGCAGCGAGAAAACTGTC+AGG | - | chr4_3:46550581-46550600 | None:intergenic | 50.0% | |
| TCGCTGCTCAATTTAGTCCC+CGG | + | chr4_3:46550591-46550610 | Msa0643520:intron | 50.0% | |
| GGTCTCTCACAACTTTCTCG+CGG | - | chr4_3:46550877-46550896 | None:intergenic | 50.0% | |
| TACCTGGTGCAGTAATCCCA+TGG | - | chr4_3:46551037-46551056 | None:intergenic | 50.0% | |
| CCAACATGGATGCTCACTCA+AGG | - | chr4_3:46551075-46551094 | None:intergenic | 50.0% | |
| CCTTGAGTGAGCATCCATGT+TGG | + | chr4_3:46551072-46551091 | Msa0643520:intron | 50.0% | |
| GTGAGCATCCATGTTGGTCA+TGG | + | chr4_3:46551078-46551097 | Msa0643520:intron | 50.0% | |
| ! | GAAGAGATTAGCCGAGCTTC+AGG | + | chr4_3:46551872-46551891 | Msa0643520:CDS | 50.0% |
| GACCAACAGATCCTGAAGCT+CGG | - | chr4_3:46551886-46551905 | None:intergenic | 50.0% | |
| AGGTGGTTGGGTAGCTCAAT+TGG | + | chr4_3:46552220-46552239 | Msa0643520:intron | 50.0% | |
| ! | GCTTATCTCTGGGGATCATG+TGG | + | chr4_3:46552476-46552495 | Msa0643520:intron | 50.0% |
| GCAAAAACAGACGCAACAGC+AGG | + | chr4_3:46552887-46552906 | Msa0643520:CDS | 50.0% | |
| ATCATCGAGAAGGGAATGCC+TGG | + | chr4_3:46552932-46552951 | Msa0643520:CDS | 50.0% | |
| TCATCGAGAAGGGAATGCCT+GGG | + | chr4_3:46552933-46552952 | Msa0643520:CDS | 50.0% | |
| ! | CGAGAATTGCTTTGTTCCGG+AGG | + | chr4_3:46553343-46553362 | Msa0643520:CDS | 50.0% |
| GTTCTTAGTGAGTGGCTGAG+TGG | - | chr4_3:46553793-46553812 | None:intergenic | 50.0% | |
| CTGCATAATACCAAGGGGAC+CGG | - | chr4_3:46554105-46554124 | None:intergenic | 50.0% | |
| AGCAGTTCGGTCGTCCTATT+GGG | + | chr4_3:46554165-46554184 | Msa0643520:CDS | 50.0% | |
| !! | CAGATTTGAGGAGGCACCTT+TGG | - | chr4_3:46554479-46554498 | None:intergenic | 50.0% |
| TGCAACCCCCTCTCAATTCT+AGG | - | chr4_3:46554886-46554905 | None:intergenic | 50.0% | |
| TCTTACTCGTTCCATGGGAG+TGG | + | chr4_3:46555049-46555068 | Msa0643520:intron | 50.0% | |
| CTTACTCGTTCCATGGGAGT+GGG | + | chr4_3:46555050-46555069 | Msa0643520:intron | 50.0% | |
| TTACTCGTTCCATGGGAGTG+GGG | + | chr4_3:46555051-46555070 | Msa0643520:intron | 50.0% | |
| ! | ATTTTACGACCCCACTCCCA+TGG | - | chr4_3:46555063-46555082 | None:intergenic | 50.0% |
| ! | CTAAGGGGGGTGTATTGGAT+TGG | - | chr4_3:46555380-46555399 | None:intergenic | 50.0% |
| CCAAGATTTGTCCCACTAGG+TGG | - | chr4_3:46555475-46555494 | None:intergenic | 50.0% | |
| CCACCTAGTGGGACAAATCT+TGG | + | chr4_3:46555472-46555491 | Msa0643520:intron | 50.0% | |
| GATGCGAAGCTCTACGAGAT+CGG | + | chr4_3:46556009-46556028 | Msa0643520:CDS | 50.0% | |
| ATGCGAAGCTCTACGAGATC+GGG | + | chr4_3:46556010-46556029 | Msa0643520:CDS | 50.0% | |
| GAAAAGGCAGCAGCATAGCG+AGG | - | chr4_3:46549776-46549795 | None:intergenic | 55.0% | |
| CTAGTAGTAGCAGTAGGGGG+GGG | - | chr4_3:46549853-46549872 | None:intergenic | 55.0% | |
| GCTAGTAGTAGCAGTAGGGG+GGG | - | chr4_3:46549854-46549873 | None:intergenic | 55.0% | |
| GGCTAGTAGTAGCAGTAGGG+GGG | - | chr4_3:46549855-46549874 | None:intergenic | 55.0% | |
| CTCCATGGGATTACTGCACC+AGG | + | chr4_3:46551032-46551051 | Msa0643520:CDS | 55.0% | |
| ! | GAGTATGGAGGGCTTGGTCT+AGG | + | chr4_3:46551824-46551843 | Msa0643520:CDS | 55.0% |
| AGCCGAGCTTCAGGATCTGT+TGG | + | chr4_3:46551881-46551900 | Msa0643520:CDS | 55.0% | |
| TGGGGATCATGTGGGAGCTT+TGG | + | chr4_3:46552485-46552504 | Msa0643520:CDS | 55.0% | |
| GACGCAACAGCAGGGTCAAA+AGG | + | chr4_3:46552896-46552915 | Msa0643520:CDS | 55.0% | |
| GAGCAGTTCGGTCGTCCTAT+TGG | + | chr4_3:46554164-46554183 | Msa0643520:CDS | 55.0% | |
| GCAGTTCGGTCGTCCTATTG+GGG | + | chr4_3:46554166-46554185 | Msa0643520:CDS | 55.0% | |
| GTAGCTCGGGACTGTGACAA+CGG | + | chr4_3:46554443-46554462 | Msa0643520:CDS | 55.0% | |
| CGTAGAGCTTCGCATCTCTG+AGG | - | chr4_3:46556005-46556024 | None:intergenic | 55.0% | |
| TGCGAAGCTCTACGAGATCG+GGG | + | chr4_3:46556011-46556030 | Msa0643520:CDS | 55.0% | |
| TTGACTGGAACTGAGCGCCT+CGG | + | chr4_3:46556113-46556132 | Msa0643520:three_prime_UTR | 55.0% | |
| ! | GCAGAGGAGTATGGAGGGCT+TGG | + | chr4_3:46551818-46551837 | Msa0643520:intron | 60.0% |
| !! | GTTTTAGCAGCCGGTCCCCT+TGG | + | chr4_3:46554092-46554111 | Msa0643520:CDS | 60.0% |
| ! | TCTCTGAGGAGACGACCGGT+TGG | - | chr4_3:46555991-46556010 | None:intergenic | 60.0% |
| ! | CGCATCTCTGAGGAGACGAC+CGG | - | chr4_3:46555995-46556014 | None:intergenic | 60.0% |
| AAGCTCTACGAGATCGGGGC+CGG | + | chr4_3:46556015-46556034 | Msa0643520:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 46549378 | 46556489 | 46549378 | ID=Msa0643520;Name=Msa0643520 |
| chr4_3 | mRNA | 46549378 | 46556489 | 46549378 | ID=Msa0643520-mRNA-1;Parent=Msa0643520;Name=Msa0643520-mRNA-1;_AED=0.10;_eAED=0.10;_QI=326|1|1|1|1|1|14|397|415 |
| chr4_3 | exon | 46549378 | 46549832 | 46549378 | ID=Msa0643520-mRNA-1:exon:10826;Parent=Msa0643520-mRNA-1 |
| chr4_3 | exon | 46550436 | 46550519 | 46550436 | ID=Msa0643520-mRNA-1:exon:10827;Parent=Msa0643520-mRNA-1 |
| chr4_3 | exon | 46550996 | 46551053 | 46550996 | ID=Msa0643520-mRNA-1:exon:10828;Parent=Msa0643520-mRNA-1 |
| chr4_3 | exon | 46551822 | 46551946 | 46551822 | ID=Msa0643520-mRNA-1:exon:10829;Parent=Msa0643520-mRNA-1 |
| chr4_3 | exon | 46552035 | 46552079 | 46552035 | ID=Msa0643520-mRNA-1:exon:10830;Parent=Msa0643520-mRNA-1 |
| chr4_3 | exon | 46552477 | 46552525 | 46552477 | ID=Msa0643520-mRNA-1:exon:10831;Parent=Msa0643520-mRNA-1 |
| chr4_3 | exon | 46552609 | 46552718 | 46552609 | ID=Msa0643520-mRNA-1:exon:10832;Parent=Msa0643520-mRNA-1 |
| chr4_3 | exon | 46552878 | 46552954 | 46552878 | ID=Msa0643520-mRNA-1:exon:10833;Parent=Msa0643520-mRNA-1 |
| chr4_3 | exon | 46553189 | 46553239 | 46553189 | ID=Msa0643520-mRNA-1:exon:10834;Parent=Msa0643520-mRNA-1 |
| chr4_3 | exon | 46553328 | 46553392 | 46553328 | ID=Msa0643520-mRNA-1:exon:10835;Parent=Msa0643520-mRNA-1 |
| chr4_3 | exon | 46554051 | 46554205 | 46554051 | ID=Msa0643520-mRNA-1:exon:10836;Parent=Msa0643520-mRNA-1 |
| chr4_3 | exon | 46554306 | 46554346 | 46554306 | ID=Msa0643520-mRNA-1:exon:10837;Parent=Msa0643520-mRNA-1 |
| chr4_3 | exon | 46554427 | 46554481 | 46554427 | ID=Msa0643520-mRNA-1:exon:10838;Parent=Msa0643520-mRNA-1 |
| chr4_3 | exon | 46555889 | 46556489 | 46555889 | ID=Msa0643520-mRNA-1:exon:10839;Parent=Msa0643520-mRNA-1 |
| chr4_3 | five_prime_UTR | 46549378 | 46549703 | 46549378 | ID=Msa0643520-mRNA-1:five_prime_utr;Parent=Msa0643520-mRNA-1 |
| chr4_3 | CDS | 46549704 | 46549832 | 46549704 | ID=Msa0643520-mRNA-1:cds;Parent=Msa0643520-mRNA-1 |
| chr4_3 | CDS | 46550436 | 46550519 | 46550436 | ID=Msa0643520-mRNA-1:cds;Parent=Msa0643520-mRNA-1 |
| chr4_3 | CDS | 46550996 | 46551053 | 46550996 | ID=Msa0643520-mRNA-1:cds;Parent=Msa0643520-mRNA-1 |
| chr4_3 | CDS | 46551822 | 46551946 | 46551822 | ID=Msa0643520-mRNA-1:cds;Parent=Msa0643520-mRNA-1 |
| chr4_3 | CDS | 46552035 | 46552079 | 46552035 | ID=Msa0643520-mRNA-1:cds;Parent=Msa0643520-mRNA-1 |
| chr4_3 | CDS | 46552477 | 46552525 | 46552477 | ID=Msa0643520-mRNA-1:cds;Parent=Msa0643520-mRNA-1 |
| chr4_3 | CDS | 46552609 | 46552718 | 46552609 | ID=Msa0643520-mRNA-1:cds;Parent=Msa0643520-mRNA-1 |
| chr4_3 | CDS | 46552878 | 46552954 | 46552878 | ID=Msa0643520-mRNA-1:cds;Parent=Msa0643520-mRNA-1 |
| chr4_3 | CDS | 46553189 | 46553239 | 46553189 | ID=Msa0643520-mRNA-1:cds;Parent=Msa0643520-mRNA-1 |
| chr4_3 | CDS | 46553328 | 46553392 | 46553328 | ID=Msa0643520-mRNA-1:cds;Parent=Msa0643520-mRNA-1 |
| chr4_3 | CDS | 46554051 | 46554205 | 46554051 | ID=Msa0643520-mRNA-1:cds;Parent=Msa0643520-mRNA-1 |
| chr4_3 | CDS | 46554306 | 46554346 | 46554306 | ID=Msa0643520-mRNA-1:cds;Parent=Msa0643520-mRNA-1 |
| chr4_3 | CDS | 46554427 | 46554481 | 46554427 | ID=Msa0643520-mRNA-1:cds;Parent=Msa0643520-mRNA-1 |
| chr4_3 | CDS | 46555889 | 46556092 | 46555889 | ID=Msa0643520-mRNA-1:cds;Parent=Msa0643520-mRNA-1 |
| chr4_3 | three_prime_UTR | 46556093 | 46556489 | 46556093 | ID=Msa0643520-mRNA-1:three_prime_utr;Parent=Msa0643520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
