Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0583170 | XP_003626806.1 | 90.538 | 465 | 26 | 1 | 1 | 447 | 1 | 465 | 0.0 | 860 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0583170 | sp|Q9M903|TGD4_ARATH | 34.827 | 491 | 262 | 12 | 1 | 446 | 1 | 478 | 4.05e-73 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0583170 | Msa0589150 | 0.809752 | 1.619855e-50 | -8.615850e-47 |
| Msa0583170 | Msa0639370 | 0.845050 | 5.169800e-59 | -8.615850e-47 |
| Msa0583170 | Msa0714030 | 0.808510 | 2.988966e-50 | -8.615850e-47 |
| Msa0583170 | Msa0746600 | 0.802772 | 4.786315e-49 | -8.615850e-47 |
| Msa0583170 | Msa0756470 | 0.833473 | 5.225499e-56 | -8.615850e-47 |
| Msa0583170 | Msa0835520 | 0.812865 | 3.419201e-51 | -8.615850e-47 |
| Msa0583170 | Msa1235150 | 0.893383 | 6.618144e-75 | -8.615850e-47 |
| Msa0583170 | Msa1309960 | 0.820730 | 5.877021e-53 | -8.615850e-47 |
| Msa0583170 | Msa1388240 | 0.807990 | 3.858160e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0583170 | MtrunA17_Chr8g0336951 | 90.538 | 465 | 26 | 1 | 1 | 447 | 1 | 465 | 0.0 | 860 |
| Msa0583170 | MtrunA17_Chr2g0297041 | 36.307 | 482 | 256 | 14 | 1 | 446 | 1 | 467 | 6.55e-76 | 244 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0583170 | AT2G44640.1 | 50.851 | 470 | 189 | 8 | 1 | 447 | 1 | 451 | 5.81e-145 | 421 |
| Msa0583170 | AT3G06960.1 | 34.827 | 491 | 262 | 12 | 1 | 446 | 1 | 478 | 4.11e-74 | 240 |
| Msa0583170 | AT3G06960.2 | 38.158 | 304 | 176 | 6 | 1 | 294 | 1 | 302 | 9.53e-55 | 186 |
Find 123 sgRNAs with CRISPR-Local
Find 359 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCCTGTGCTTCCTGGATT+TGG | 0.253326 | 4_2:+1626944 | Msa0583170:CDS |
| CAGGTAGCTCCTGTGCTTCC+TGG | 0.270782 | 4_2:+1626938 | Msa0583170:intron |
| TTGCTTGGTATTCACCAAAA+AGG | 0.275530 | 4_2:+1628067 | Msa0583170:CDS |
| CGAGTCTATATCAGTTGATT+TGG | 0.278646 | 4_2:+1625484 | Msa0583170:CDS |
| CAGCCATTGATTCATCATTC+TGG | 0.279261 | 4_2:+1622954 | Msa0583170:CDS |
| CAAAGAATCAATCGAAATTC+TGG | 0.282288 | 4_2:-1627950 | None:intergenic |
| CCTTCAACATCTGTGTTGTT+TGG | 0.283212 | 4_2:+1625034 | Msa0583170:CDS |
| GGAAGATTCACAAAGAAGTT+TGG | 0.289114 | 4_2:+1627078 | Msa0583170:CDS |
| GAAGATTCACAAAGAAGTTT+GGG | 0.296464 | 4_2:+1627079 | Msa0583170:CDS |
| GTACCTCATGCAGCAGTATC+TGG | 0.307606 | 4_2:+1625731 | Msa0583170:CDS |
| GACTCCACATCGCTAGCTTT+AGG | 0.309022 | 4_2:-1628033 | None:intergenic |
| ATCTGTGTTGTTTGGTTTAG+AGG | 0.310418 | 4_2:+1625042 | Msa0583170:CDS |
| TCCACATTACCACGGACTTA+TGG | 0.315616 | 4_2:+1625709 | Msa0583170:CDS |
| ACTCCACATCGCTAGCTTTA+GGG | 0.317436 | 4_2:-1628032 | None:intergenic |
| GGCATCCCTTGTGGCTCGTC+GGG | 0.317553 | 4_2:+1625505 | Msa0583170:CDS |
| GCAGCAGTATCTGGAATTAT+TGG | 0.335779 | 4_2:+1625740 | Msa0583170:CDS |
| TTTCTTCTCTTTGACACAGC+TGG | 0.345108 | 4_2:-1627000 | None:intergenic |
| AAAGGAACCATACTCCTTCT+TGG | 0.350882 | 4_2:-1623146 | None:intergenic |
| TTGACCACAAAGGAAGATAC+TGG | 0.352098 | 4_2:+1625453 | Msa0583170:CDS |
| CGGGGATTGCGATACCGCTT+TGG | 0.356101 | 4_2:+1625524 | Msa0583170:CDS |
| ATTGAAAATTTAATTGCAAC+AGG | 0.372612 | 4_2:+1628361 | Msa0583170:three_prime_UTR |
| CGGAAAGAACCTTATTGATT+CGG | 0.383096 | 4_2:+1626969 | Msa0583170:CDS |
| TATAGGTGGCTTGCAGCAAC+TGG | 0.383507 | 4_2:+1624860 | Msa0583170:intron |
| GATCCTCTCCCGAATCAATA+AGG | 0.384097 | 4_2:-1626978 | None:intergenic |
| GGGGATTGCGATACCGCTTT+GGG | 0.386728 | 4_2:+1625525 | Msa0583170:CDS |
| GGTTGGGCCAAGTTTGTTCC+TGG | 0.387086 | 4_2:+1623010 | Msa0583170:CDS |
| CCTTCTCCCAAGAAGGAGTA+TGG | 0.388810 | 4_2:+1623139 | Msa0583170:CDS |
| ACTGAAGCGTCAAGAGGAAT+AGG | 0.389532 | 4_2:-1623037 | None:intergenic |
| GGAAAGAACCTTATTGATTC+GGG | 0.392979 | 4_2:+1626970 | Msa0583170:CDS |
| AATGTCTAATTGTAGGTTGC+AGG | 0.396953 | 4_2:+1627904 | Msa0583170:intron |
| CTAGATATATCTTCAGCTTC+CGG | 0.399624 | 4_2:+1627126 | Msa0583170:CDS |
| ACTTAAGAGTTATGTTTAGT+TGG | 0.406432 | 4_2:+1628259 | Msa0583170:three_prime_UTR |
| AAAGCTAGCGATGTGGAGTC+TGG | 0.420043 | 4_2:+1628036 | Msa0583170:CDS |
| AGCCATTGATTCATCATTCT+GGG | 0.424530 | 4_2:+1622955 | Msa0583170:CDS |
| TCCACAAAACCTCGATGGTT+GGG | 0.430228 | 4_2:+1622994 | Msa0583170:CDS |
| CAACTGGACAATTCCGTCCT+AGG | 0.440660 | 4_2:+1624876 | Msa0583170:CDS |
| TCACTTCTCCTTGATTTCAC+TGG | 0.444371 | 4_2:+1623178 | Msa0583170:CDS |
| GAATCTGCTCGAAATACAAC+TGG | 0.446191 | 4_2:-1627928 | None:intergenic |
| ATTCAATCTCTCCACAGTTA+AGG | 0.455924 | 4_2:+1624943 | Msa0583170:CDS |
| AGAAGTTTGGGGACTTAACC+CGG | 0.462716 | 4_2:+1627091 | Msa0583170:CDS |
| CATCCCAGTATCTTCCTTTG+TGG | 0.468934 | 4_2:-1625457 | None:intergenic |
| GCTGCAAATGAAATCTTCAA+TGG | 0.468982 | 4_2:-1627992 | None:intergenic |
| TGGCATCCCTTGTGGCTCGT+CGG | 0.472617 | 4_2:+1625504 | Msa0583170:CDS |
| GAGAAGTGACTGAAATGAAA+AGG | 0.473027 | 4_2:-1623164 | None:intergenic |
| AAGGAACCATACTCCTTCTT+GGG | 0.477484 | 4_2:-1623145 | None:intergenic |
| CTCCACAAAACCTCGATGGT+TGG | 0.478725 | 4_2:+1622993 | Msa0583170:CDS |
| GTCCCAGAATGATGAATCAA+TGG | 0.487363 | 4_2:-1622957 | None:intergenic |
| CTTGCGAAGAAAATTCTGAA+TGG | 0.488339 | 4_2:+1627150 | Msa0583170:CDS |
| CTCAGCTCCTTCTCCCAAGA+AGG | 0.491627 | 4_2:+1623132 | Msa0583170:CDS |
| CCAAACAACACAGATGTTGA+AGG | 0.492018 | 4_2:-1625034 | None:intergenic |
| GTTCTTTCCGTTCCAAATCC+AGG | 0.492275 | 4_2:-1626956 | None:intergenic |
| TGATGTGTGGGAGTTGTTGA+TGG | 0.492332 | 4_2:-1623078 | None:intergenic |
| ACACCGCTGTCTCTACTGCC+AGG | 0.495012 | 4_2:+1625599 | Msa0583170:CDS |
| ATCGTAAGTAACAGCCGCCT+TGG | 0.496861 | 4_2:-1625630 | None:intergenic |
| AACGATGACCAGTGAAATCA+AGG | 0.503727 | 4_2:-1623186 | None:intergenic |
| CACAACATCATCATCATCAA+TGG | 0.511600 | 4_2:+1622919 | Msa0583170:exon |
| CTGAAGCGTCAAGAGGAATA+GGG | 0.513543 | 4_2:-1623036 | None:intergenic |
| TCTGTGTTGTTTGGTTTAGA+GGG | 0.522771 | 4_2:+1625043 | Msa0583170:CDS |
| TAAGAACAACGGTAGTCCTC+AGG | 0.529738 | 4_2:+1625553 | Msa0583170:CDS |
| ACGATAAGATCAAGTACCTC+TGG | 0.530068 | 4_2:+1625648 | Msa0583170:CDS |
| TTGGGAGAAGGAGCTGAGGA+AGG | 0.531214 | 4_2:-1623127 | None:intergenic |
| ATTCTAAAATGAACGATGCA+TGG | 0.531505 | 4_2:-1628203 | None:intergenic |
| TATCTAGACGAGCATCTACC+CGG | 0.531804 | 4_2:-1627110 | None:intergenic |
| GCCGCCTTGGCACATAACCC+TGG | 0.538068 | 4_2:-1625617 | None:intergenic |
| AGTTGATTTGGCATCCCTTG+TGG | 0.540341 | 4_2:+1625496 | Msa0583170:CDS |
| CCATACTCCTTCTTGGGAGA+AGG | 0.543963 | 4_2:-1623139 | None:intergenic |
| AGGGTCACCAGGAACAAACT+TGG | 0.547546 | 4_2:-1623017 | None:intergenic |
| TTGATTTCACTGGTCATCGT+TGG | 0.548954 | 4_2:+1623188 | Msa0583170:CDS |
| GATTCTTTGAACAAGAAACA+TGG | 0.549987 | 4_2:+1627964 | Msa0583170:CDS |
| ATTCTTTGAACAAGAAACAT+GGG | 0.551737 | 4_2:+1627965 | Msa0583170:CDS |
| ACCATAAGTCCGTGGTAATG+TGG | 0.556100 | 4_2:-1625710 | None:intergenic |
| CAAATCAACTGATATAGACT+CGG | 0.556932 | 4_2:-1625483 | None:intergenic |
| GAACCTTATTGATTCGGGAG+AGG | 0.559230 | 4_2:+1626975 | Msa0583170:CDS |
| TCCTCTCCACAAAACCTCGA+TGG | 0.565773 | 4_2:+1622989 | Msa0583170:CDS |
| GTTCCAAATCCAGGAAGCAC+AGG | 0.585341 | 4_2:-1626947 | None:intergenic |
| TGATGATGATGATGTTGTGC+GGG | 0.585517 | 4_2:-1622915 | None:intergenic |
| TGTGCTTCCTGGATTTGGAA+CGG | 0.585569 | 4_2:+1626949 | Msa0583170:CDS |
| TTGTTTGGTTTAGAGGGCCA+TGG | 0.586865 | 4_2:+1625049 | Msa0583170:CDS |
| CATCATCATCATCAATGGCT+AGG | 0.589680 | 4_2:+1622924 | Msa0583170:exon |
| TCAAGAGGAATAGGGTCACC+AGG | 0.593510 | 4_2:-1623028 | None:intergenic |
| ATCTTACAGTGGAGGCAGCA+TGG | 0.600522 | 4_2:+1625417 | Msa0583170:CDS |
| GTTTGCTATACTTTGCAGCA+AGG | 0.605503 | 4_2:+1627057 | Msa0583170:CDS |
| ACTGCCAGGGTTATGTGCCA+AGG | 0.607980 | 4_2:+1625613 | Msa0583170:CDS |
| CTTTGCAACGTCCTTAACTG+TGG | 0.610680 | 4_2:-1624954 | None:intergenic |
| TGGGAGAAGGAGCTGAGGAA+GGG | 0.611872 | 4_2:-1623126 | None:intergenic |
| GCATCCCTTGTGGCTCGTCG+GGG | 0.614398 | 4_2:+1625506 | Msa0583170:CDS |
| TGAAGTGAAGTGAAGTGAAG+AGG | 0.614792 | 4_2:-1622867 | None:intergenic |
| CACCGCTGTCTCTACTGCCA+GGG | 0.614848 | 4_2:+1625600 | Msa0583170:CDS |
| CTGGAGAAACACGGAGACTG+AGG | 0.616034 | 4_2:+1625667 | Msa0583170:CDS |
| CAGTCTCCGTGTTTCTCCAG+AGG | 0.618270 | 4_2:-1625664 | None:intergenic |
| CTGGAAACTGAAGCGTCAAG+AGG | 0.619867 | 4_2:-1623043 | None:intergenic |
| GCAATCCCCGACGAGCCACA+AGG | 0.623218 | 4_2:-1625511 | None:intergenic |
| GAAGTTTGGGGACTTAACCC+GGG | 0.623442 | 4_2:+1627092 | Msa0583170:CDS |
| GAAAATGATGAGTGATGTGT+GGG | 0.624980 | 4_2:-1623090 | None:intergenic |
| GAGGAAGGGATAATGCCAAA+GGG | 0.625924 | 4_2:-1623112 | None:intergenic |
| TGATCACGATCTTACAGTGG+AGG | 0.626341 | 4_2:+1625409 | Msa0583170:CDS |
| TGAGGAAGGGATAATGCCAA+AGG | 0.630223 | 4_2:-1623113 | None:intergenic |
| CAATCCCCGACGAGCCACAA+GGG | 0.631020 | 4_2:-1625510 | None:intergenic |
| TTGATGGCGATAGAGTCTGC+TGG | 0.631814 | 4_2:-1623062 | None:intergenic |
| GCCAGGGTTATGTGCCAAGG+CGG | 0.636658 | 4_2:+1625616 | Msa0583170:CDS |
| CTTCTTGGGAGAAGGAGCTG+AGG | 0.640737 | 4_2:-1623131 | None:intergenic |
| GGCTTGTTTCCACATTACCA+CGG | 0.643480 | 4_2:+1625701 | Msa0583170:CDS |
| AAGATTCACAAAGAAGTTTG+GGG | 0.651005 | 4_2:+1627080 | Msa0583170:CDS |
| ATTCCAGATACTGCTGCATG+AGG | 0.653346 | 4_2:-1625734 | None:intergenic |
| TTCTGATCACGATCTTACAG+TGG | 0.653407 | 4_2:+1625406 | Msa0583170:CDS |
| ATCTAGACGAGCATCTACCC+GGG | 0.654861 | 4_2:-1627109 | None:intergenic |
| GAGAAACACGGAGACTGAGG+AGG | 0.661282 | 4_2:+1625670 | Msa0583170:CDS |
| CAAGTACCTCTGGAGAAACA+CGG | 0.661736 | 4_2:+1625658 | Msa0583170:CDS |
| AAATCAACTGATATAGACTC+GGG | 0.662894 | 4_2:-1625482 | None:intergenic |
| CAGTTGTTTGTTGACCACAA+AGG | 0.665261 | 4_2:+1625443 | Msa0583170:CDS |
| TGACCACAAAGGAAGATACT+GGG | 0.665611 | 4_2:+1625454 | Msa0583170:CDS |
| TCAGTTGCATTAGTAGCCTG+AGG | 0.666364 | 4_2:-1625569 | None:intergenic |
| TGTTCTTATGCATCCCAAAG+CGG | 0.671112 | 4_2:-1625538 | None:intergenic |
| GGAAAATGATGAGTGATGTG+TGG | 0.673246 | 4_2:-1623091 | None:intergenic |
| TGACCCTAAAGCTAGCGATG+TGG | 0.680404 | 4_2:+1628029 | Msa0583170:CDS |
| TTGATGATGATGATGTTGTG+CGG | 0.685767 | 4_2:-1622916 | None:intergenic |
| AACCCTGGCAGTAGAGACAG+CGG | 0.710115 | 4_2:-1625602 | None:intergenic |
| CATGAGGTACCATAAGTCCG+TGG | 0.716130 | 4_2:-1625718 | None:intergenic |
| TTTGGGATGCATAAGAACAA+CGG | 0.717493 | 4_2:+1625542 | Msa0583170:CDS |
| GAGACTGAGGAGGAATACGA+AGG | 0.720894 | 4_2:+1625680 | Msa0583170:CDS |
| TTGTGGTCAACAAACAACTG+AGG | 0.728374 | 4_2:-1625440 | None:intergenic |
| CAAACTTGGCCCAACCATCG+AGG | 0.733200 | 4_2:-1623003 | None:intergenic |
| AGGAGATAAAGCAAACTGTG+AGG | 0.736725 | 4_2:-1625014 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATTGGATTTTTTTTTT+TGG | + | chr4_2:1623333-1623352 | Msa0583170:intron | 10.0% |
| !!! | AAAATTGGATTTTTTTTTTT+GGG | + | chr4_2:1623334-1623353 | Msa0583170:intron | 10.0% |
| !!! | TAATTATTTTTGTTTTGTTA+TGG | + | chr4_2:1626902-1626921 | Msa0583170:intron | 10.0% |
| !!! | TTCAAACATTTTAATCATAA+TGG | + | chr4_2:1623272-1623291 | Msa0583170:intron | 15.0% |
| !!! | TCAAACATTTTAATCATAAT+GGG | + | chr4_2:1623273-1623292 | Msa0583170:intron | 15.0% |
| !!! | AAAGAAGCATATAAAAAAAA+CGG | - | chr4_2:1623313-1623332 | None:intergenic | 15.0% |
| !!! | TTATATGCTTCTTTAAAAAT+TGG | + | chr4_2:1623319-1623338 | Msa0583170:intron | 15.0% |
| !!! | AAATTGGATTTTTTTTTTTG+GGG | + | chr4_2:1623826-1623845 | Msa0583170:intron | 15.0% |
| !! | TGTATTATTTGAATTTGAAT+GGG | + | chr4_2:1624036-1624055 | Msa0583170:intron | 15.0% |
| !! | TCATTTCTTGAATAAAAAAT+AGG | + | chr4_2:1624176-1624195 | Msa0583170:intron | 15.0% |
| !! | AATTTATCTTCTTCAATATA+AGG | + | chr4_2:1624352-1624371 | Msa0583170:intron | 15.0% |
| !!! | TTTTATAGATTACATAAACA+TGG | - | chr4_2:1624786-1624805 | None:intergenic | 15.0% |
| !!! | ATATTTTTCAATTTCAGAAA+AGG | - | chr4_2:1625248-1625267 | None:intergenic | 15.0% |
| !! | TTTCATTTACTATTTGATTA+AGG | - | chr4_2:1626098-1626117 | None:intergenic | 15.0% |
| !! | AATCAAATAGTAAATGAAAT+AGG | + | chr4_2:1626099-1626118 | Msa0583170:intron | 15.0% |
| !!! | ATTTATTGTGTTGATTTTTT+TGG | + | chr4_2:1626206-1626225 | Msa0583170:intron | 15.0% |
| !!! | ACATTTTTTTTATAAAAGAG+AGG | + | chr4_2:1626400-1626419 | Msa0583170:intron | 15.0% |
| !!! | CATTTTTTTTATAAAAGAGA+GGG | + | chr4_2:1626401-1626420 | Msa0583170:intron | 15.0% |
| !! | TTAATTCAATATACTGAAAT+TGG | + | chr4_2:1627795-1627814 | Msa0583170:intron | 15.0% |
| !! | GAAATGAAAATACAATATTA+AGG | + | chr4_2:1627870-1627889 | Msa0583170:intron | 15.0% |
| !!! | AAAAATAACAAAAGTGTAAT+TGG | - | chr4_2:1628306-1628325 | None:intergenic | 15.0% |
| !! | AATGAAACTTTAGACAATTT+AGG | + | chr4_2:1623409-1623428 | Msa0583170:intron | 20.0% |
| !! | AGAAAAAAATGTTAACAAAC+AGG | + | chr4_2:1623700-1623719 | Msa0583170:intron | 20.0% |
| !! | TTATAAGCTATAAGCTTAAA+GGG | + | chr4_2:1623743-1623762 | Msa0583170:intron | 20.0% |
| !!! | TGTTATGCTTCTTTAAAAAT+TGG | + | chr4_2:1623810-1623829 | Msa0583170:intron | 20.0% |
| !!! | AATTGGATTTTTTTTTTTGG+GGG | + | chr4_2:1623827-1623846 | Msa0583170:intron | 20.0% |
| !! | TTTCAATTTCTTACTTTGAT+GGG | + | chr4_2:1623890-1623909 | Msa0583170:intron | 20.0% |
| !! | GTGTATTATTTGAATTTGAA+TGG | + | chr4_2:1624035-1624054 | Msa0583170:intron | 20.0% |
| !!! | TGTTTAGCTTTTAATTCATT+TGG | - | chr4_2:1624063-1624082 | None:intergenic | 20.0% |
| !! | TTATGTTAATACAAAAGAAG+AGG | + | chr4_2:1624088-1624107 | Msa0583170:intron | 20.0% |
| !! | TATGTTAATACAAAAGAAGA+GGG | + | chr4_2:1624089-1624108 | Msa0583170:intron | 20.0% |
| !! | TTTATTCAAGAAATGAGAAT+TGG | - | chr4_2:1624172-1624191 | None:intergenic | 20.0% |
| !!! | TATGTTTTGATCATTAGTTT+TGG | + | chr4_2:1624322-1624341 | Msa0583170:intron | 20.0% |
| !! | AAATATCGTACTTCATATAT+TGG | + | chr4_2:1624392-1624411 | Msa0583170:intron | 20.0% |
| !!! | GTTTCTTATTTCACTATATT+CGG | + | chr4_2:1624707-1624726 | Msa0583170:intron | 20.0% |
| !! | ATGTAATCTATAAAACATCA+TGG | + | chr4_2:1624791-1624810 | Msa0583170:intron | 20.0% |
| !!! | TTATTTTTCATTATCTGATG+TGG | + | chr4_2:1625138-1625157 | Msa0583170:intron | 20.0% |
| !! | CAACTCATAATACTATAAAT+TGG | + | chr4_2:1625272-1625291 | Msa0583170:intron | 20.0% |
| !!! | TCTTTTTCATTTTTATGGTT+CGG | + | chr4_2:1625839-1625858 | Msa0583170:intron | 20.0% |
| !! | AGAGAGAATAAAACATAAAA+GGG | - | chr4_2:1625917-1625936 | None:intergenic | 20.0% |
| !! | AAGAGAGAATAAAACATAAA+AGG | - | chr4_2:1625918-1625937 | None:intergenic | 20.0% |
| !!! | TCTTTTTTTGCTAGAATTAT+AGG | + | chr4_2:1625934-1625953 | Msa0583170:intron | 20.0% |
| !! | AATAAACTCTTATTGGATTA+AGG | - | chr4_2:1626357-1626376 | None:intergenic | 20.0% |
| !! | TTAATCCAATAAGAGTTTAT+TGG | + | chr4_2:1626356-1626375 | Msa0583170:intron | 20.0% |
| !! | TAATCCAATAAGAGTTTATT+GGG | + | chr4_2:1626357-1626376 | Msa0583170:intron | 20.0% |
| !!! | AAGTTTTTTAAGAGTTTGTT+AGG | + | chr4_2:1626449-1626468 | Msa0583170:intron | 20.0% |
| !!! | TAGATTTTGCTTAATTTTCA+GGG | - | chr4_2:1626699-1626718 | None:intergenic | 20.0% |
| !! | TTATGGTTCATAATAAATTC+AGG | + | chr4_2:1626919-1626938 | Msa0583170:intron | 20.0% |
| !!! | TTAAGTTGTTTATCCAAAAA+TGG | - | chr4_2:1627302-1627321 | None:intergenic | 20.0% |
| !!! | GTAACTGTAAAGAATTTTTA+CGG | + | chr4_2:1627568-1627587 | Msa0583170:intron | 20.0% |
| !! | CTATACTATTCAAATGAAAA+AGG | + | chr4_2:1627739-1627758 | Msa0583170:intron | 20.0% |
| !!! | AAAAATCAACTAACTCATTT+TGG | - | chr4_2:1628230-1628249 | None:intergenic | 20.0% |
| !! | ATTGAAAATTTAATTGCAAC+AGG | + | chr4_2:1628361-1628380 | Msa0583170:three_prime_UTR | 20.0% |
| !! | TTTAATTTACTTGAGCATGA+TGG | + | chr4_2:1623384-1623403 | Msa0583170:intron | 25.0% |
| ! | TTATGGATAGTTAATAAGCT+AGG | + | chr4_2:1623449-1623468 | Msa0583170:intron | 25.0% |
| ! | ATAGTTAATAAGCTAGGTTA+TGG | + | chr4_2:1623455-1623474 | Msa0583170:intron | 25.0% |
| ! | CTGATTGAATTTGTAATGTT+TGG | + | chr4_2:1623536-1623555 | Msa0583170:intron | 25.0% |
| ! | GTAATGTTTGGTAAATTTAG+TGG | + | chr4_2:1623548-1623567 | Msa0583170:intron | 25.0% |
| ! | ATTACAGAGTTAAAATTGAG+AGG | + | chr4_2:1623645-1623664 | Msa0583170:intron | 25.0% |
| ! | CTTATAAGCTATAAGCTTAA+AGG | + | chr4_2:1623742-1623761 | Msa0583170:intron | 25.0% |
| !! | AAAGAAGCATAACAAAAAAC+AGG | - | chr4_2:1623804-1623823 | None:intergenic | 25.0% |
| !!! | ATTGGATTTTTTTTTTTGGG+GGG | + | chr4_2:1623828-1623847 | Msa0583170:intron | 25.0% |
| ! | GTTTCAATTTCTTACTTTGA+TGG | + | chr4_2:1623889-1623908 | Msa0583170:intron | 25.0% |
| ! | TTCAATTTCTTACTTTGATG+GGG | + | chr4_2:1623891-1623910 | Msa0583170:intron | 25.0% |
| ! | CTTGAATAAAAAATAGGAGT+TGG | + | chr4_2:1624182-1624201 | Msa0583170:intron | 25.0% |
| !! | ATATCAACTATCATTTTCCT+AGG | - | chr4_2:1624896-1624915 | None:intergenic | 25.0% |
| !!! | ACAAGTCACTTTTTTCATAT+GGG | + | chr4_2:1624987-1625006 | Msa0583170:CDS | 25.0% |
| !!! | TCAACATTTTGAGAGTATAA+AGG | - | chr4_2:1625185-1625204 | None:intergenic | 25.0% |
| !!! | ACCACTCTTTTTCATTTTTA+TGG | + | chr4_2:1625834-1625853 | Msa0583170:intron | 25.0% |
| ! | ACCATAAAAATGAAAAAGAG+TGG | - | chr4_2:1625838-1625857 | None:intergenic | 25.0% |
| ! | TTTGCTAGAATTATAGGATT+AGG | + | chr4_2:1625940-1625959 | Msa0583170:intron | 25.0% |
| ! | ATAGGATTAGGTAAAGAAAA+AGG | + | chr4_2:1625952-1625971 | Msa0583170:intron | 25.0% |
| ! | TTGATTAAGGATTAAAAGTC+CGG | - | chr4_2:1626085-1626104 | None:intergenic | 25.0% |
| ! | AAATATGAAAATCACTCTGA+TGG | + | chr4_2:1626132-1626151 | Msa0583170:intron | 25.0% |
| ! | AATATGAAAATCACTCTGAT+GGG | + | chr4_2:1626133-1626152 | Msa0583170:intron | 25.0% |
| ! | AAATCAACACAATAAATCTC+AGG | - | chr4_2:1626203-1626222 | None:intergenic | 25.0% |
| ! | AAAAATGTTCCTAAAACTCA+GGG | - | chr4_2:1626388-1626407 | None:intergenic | 25.0% |
| ! | AAAAAATGTTCCTAAAACTC+AGG | - | chr4_2:1626389-1626408 | None:intergenic | 25.0% |
| ! | GATAGAACTAGTAAATTCAA+AGG | - | chr4_2:1626611-1626630 | None:intergenic | 25.0% |
| !!! | TTTACTAGTTCTATCAAACT+CGG | + | chr4_2:1626616-1626635 | Msa0583170:intron | 25.0% |
| ! | TCATTATGTTACAAACTACT+TGG | + | chr4_2:1626671-1626690 | Msa0583170:intron | 25.0% |
| !! | CTAGATTTTGCTTAATTTTC+AGG | - | chr4_2:1626700-1626719 | None:intergenic | 25.0% |
| ! | AATCTAGACATGCTAATAAT+AGG | + | chr4_2:1626713-1626732 | Msa0583170:intron | 25.0% |
| ! | ACTTATGGAATCAATATGAA+TGG | + | chr4_2:1626760-1626779 | Msa0583170:intron | 25.0% |
| !! | AATCAATATGAATGGATTCA+AGG | + | chr4_2:1626768-1626787 | Msa0583170:intron | 25.0% |
| ! | AGAGTTTGTATGAAAATCAA+GGG | - | chr4_2:1626822-1626841 | None:intergenic | 25.0% |
| ! | AAGAGTTTGTATGAAAATCA+AGG | - | chr4_2:1626823-1626842 | None:intergenic | 25.0% |
| !! | AGATTTAATGCCGAAATTTT+TGG | + | chr4_2:1627030-1627049 | Msa0583170:CDS | 25.0% |
| ! | TAACTTAATCTTTCAACAAC+AGG | + | chr4_2:1627230-1627249 | Msa0583170:intron | 25.0% |
| !! | AATCTTGTTTATGATCTTCA+TGG | + | chr4_2:1627689-1627708 | Msa0583170:intron | 25.0% |
| ! | TACTATTCAAATGAAAAAGG+AGG | + | chr4_2:1627742-1627761 | Msa0583170:intron | 25.0% |
| ! | AATTAATCAACATTTCACTG+CGG | - | chr4_2:1627781-1627800 | None:intergenic | 25.0% |
| !! | TTTTCGAAATGTCTAATTGT+AGG | + | chr4_2:1627897-1627916 | Msa0583170:intron | 25.0% |
| ! | ATTCTTTGAACAAGAAACAT+GGG | + | chr4_2:1627965-1627984 | Msa0583170:CDS | 25.0% |
| ! | ATGCATGAAAGTTACAAAAA+TGG | - | chr4_2:1628148-1628167 | None:intergenic | 25.0% |
| ! | ACTTAAGAGTTATGTTTAGT+TGG | + | chr4_2:1628259-1628278 | Msa0583170:three_prime_UTR | 25.0% |
| TAGACAATTTAGGCTATGTT+TGG | + | chr4_2:1623419-1623438 | Msa0583170:intron | 30.0% | |
| CTATGTTTGGCAAGAAATTA+TGG | + | chr4_2:1623432-1623451 | Msa0583170:intron | 30.0% | |
| TGTTTGGTAAATTTAGTGGT+TGG | + | chr4_2:1623552-1623571 | Msa0583170:intron | 30.0% | |
| GGTTATTGAATGGCTTAAAT+GGG | + | chr4_2:1623855-1623874 | Msa0583170:intron | 30.0% | |
| GTTATTGAATGGCTTAAATG+GGG | + | chr4_2:1623856-1623875 | Msa0583170:intron | 30.0% | |
| TTATTGAATGGCTTAAATGG+GGG | + | chr4_2:1623857-1623876 | Msa0583170:intron | 30.0% | |
| TCAATTTCTTACTTTGATGG+GGG | + | chr4_2:1623892-1623911 | Msa0583170:intron | 30.0% | |
| !! | ATGTTTGATCTTGTTGTTGA+TGG | + | chr4_2:1623993-1624012 | Msa0583170:intron | 30.0% |
| ACATTGTCTCATATTGTTAC+TGG | + | chr4_2:1624547-1624566 | Msa0583170:intron | 30.0% | |
| ! | ATTATGAGTACGTTGATAAG+TGG | - | chr4_2:1624751-1624770 | None:intergenic | 30.0% |
| AGCTTAATTATGGTCGATAT+AGG | + | chr4_2:1624843-1624862 | Msa0583170:intron | 30.0% | |
| TTAATTATGGTCGATATAGG+TGG | + | chr4_2:1624846-1624865 | Msa0583170:intron | 30.0% | |
| !!! | GACAAGTCACTTTTTTCATA+TGG | + | chr4_2:1624986-1625005 | Msa0583170:CDS | 30.0% |
| !!! | GAAAAAACACCACTTTTTTG+CGG | - | chr4_2:1625090-1625109 | None:intergenic | 30.0% |
| !!! | CAAAAAAGTGGTGTTTTTTC+AGG | + | chr4_2:1625090-1625109 | Msa0583170:CDS | 30.0% |
| AGTATAAAGGAAGTCTATCA+TGG | - | chr4_2:1625172-1625191 | None:intergenic | 30.0% | |
| CTATAAATTGGATCATGCAA+TGG | + | chr4_2:1625284-1625303 | Msa0583170:intron | 30.0% | |
| AAATCAACTGATATAGACTC+GGG | - | chr4_2:1625485-1625504 | None:intergenic | 30.0% | |
| CAAATCAACTGATATAGACT+CGG | - | chr4_2:1625486-1625505 | None:intergenic | 30.0% | |
| CATTAGTATGTTTGTGTACT+CGG | + | chr4_2:1625809-1625828 | Msa0583170:intron | 30.0% | |
| GAAAAAGGAGAACATAGTTA+AGG | + | chr4_2:1625967-1625986 | Msa0583170:intron | 30.0% | |
| !!! | GTCCTTTTTTATCATAGTAC+CGG | + | chr4_2:1626063-1626082 | Msa0583170:intron | 30.0% |
| !!! | ATTTTTTTGGTCTTAACCTC+TGG | + | chr4_2:1626219-1626238 | Msa0583170:intron | 30.0% |
| ATCATGACTGAAACAATCAT+TGG | - | chr4_2:1626305-1626324 | None:intergenic | 30.0% | |
| ATGTCCCAATAAACTCTTAT+TGG | - | chr4_2:1626364-1626383 | None:intergenic | 30.0% | |
| AAAATGTTCCTAAAACTCAG+GGG | - | chr4_2:1626387-1626406 | None:intergenic | 30.0% | |
| CAAAGGTAACACTGTATTAT+TGG | - | chr4_2:1626594-1626613 | None:intergenic | 30.0% | |
| !! | CATATTGATTCCATAAGTGA+GGG | - | chr4_2:1626758-1626777 | None:intergenic | 30.0% |
| !! | TCATATTGATTCCATAAGTG+AGG | - | chr4_2:1626759-1626778 | None:intergenic | 30.0% |
| GAGTTTGTATGAAAATCAAG+GGG | - | chr4_2:1626821-1626840 | None:intergenic | 30.0% | |
| !!! | ACAAACTCTTTTTTCGTCAT+CGG | + | chr4_2:1626833-1626852 | Msa0583170:intron | 30.0% |
| GCAAACTGAACCAAAAATTT+CGG | - | chr4_2:1627043-1627062 | None:intergenic | 30.0% | |
| GAAGATTCACAAAGAAGTTT+GGG | + | chr4_2:1627079-1627098 | Msa0583170:CDS | 30.0% | |
| AAGATTCACAAAGAAGTTTG+GGG | + | chr4_2:1627080-1627099 | Msa0583170:CDS | 30.0% | |
| TTGAAAGATTAAGTTAAGCC+GGG | - | chr4_2:1627226-1627245 | None:intergenic | 30.0% | |
| GTTGAAAGATTAAGTTAAGC+CGG | - | chr4_2:1627227-1627246 | None:intergenic | 30.0% | |
| AAAGATAGTTGCTCTTATCA+AGG | - | chr4_2:1627266-1627285 | None:intergenic | 30.0% | |
| TGATAAGAGCAACTATCTTT+AGG | + | chr4_2:1627266-1627285 | Msa0583170:intron | 30.0% | |
| AACTATCTTTAGGTGTCTTT+AGG | + | chr4_2:1627276-1627295 | Msa0583170:intron | 30.0% | |
| ! | GTAAAGAATTTTTACGGAGT+AGG | + | chr4_2:1627574-1627593 | Msa0583170:intron | 30.0% |
| TCATTTGAATAGTATAGCCA+AGG | - | chr4_2:1627736-1627755 | None:intergenic | 30.0% | |
| TTCAAATGAAAAAGGAGGAA+CGG | + | chr4_2:1627747-1627766 | Msa0583170:intron | 30.0% | |
| TCATTTCTGAATCATAGCTA+TGG | - | chr4_2:1627857-1627876 | None:intergenic | 30.0% | |
| CAAAGAATCAATCGAAATTC+TGG | - | chr4_2:1627953-1627972 | None:intergenic | 30.0% | |
| GATTCTTTGAACAAGAAACA+TGG | + | chr4_2:1627964-1627983 | Msa0583170:CDS | 30.0% | |
| TATTCACCAAAAAGGAATGA+AGG | + | chr4_2:1628075-1628094 | Msa0583170:CDS | 30.0% | |
| ATTCACCAAAAAGGAATGAA+GGG | + | chr4_2:1628076-1628095 | Msa0583170:CDS | 30.0% | |
| !! | ATGACACTTTTTAATGCAAG+AGG | + | chr4_2:1628166-1628185 | Msa0583170:three_prime_UTR | 30.0% |
| !! | TGACACTTTTTAATGCAAGA+GGG | + | chr4_2:1628167-1628186 | Msa0583170:three_prime_UTR | 30.0% |
| !! | ATTCTAAAATGAACGATGCA+TGG | - | chr4_2:1628206-1628225 | None:intergenic | 30.0% |
| !!! | GAAGAGGTTTTGTTTTGTTG+AGG | - | chr4_2:1622854-1622873 | None:intergenic | 35.0% |
| !! | TTGATGATGATGATGTTGTG+CGG | - | chr4_2:1622919-1622938 | None:intergenic | 35.0% |
| CACAACATCATCATCATCAA+TGG | + | chr4_2:1622919-1622938 | Msa0583170:exon | 35.0% | |
| !! | AGCCATTGATTCATCATTCT+GGG | + | chr4_2:1622955-1622974 | Msa0583170:CDS | 35.0% |
| GAAAATGATGAGTGATGTGT+GGG | - | chr4_2:1623093-1623112 | None:intergenic | 35.0% | |
| ! | ATCACTCATCATTTTCCCTT+TGG | + | chr4_2:1623097-1623116 | Msa0583170:CDS | 35.0% |
| GAGAAGTGACTGAAATGAAA+AGG | - | chr4_2:1623167-1623186 | None:intergenic | 35.0% | |
| ! | ATAAGCTAGCTTGTAGCTTA+TGG | + | chr4_2:1623502-1623521 | Msa0583170:intron | 35.0% |
| ! | TAAGCTAGCTTGTAGCTTAT+GGG | + | chr4_2:1623503-1623522 | Msa0583170:intron | 35.0% |
| TAAGCTATAAGCTTAAAGGG+TGG | + | chr4_2:1623746-1623765 | Msa0583170:intron | 35.0% | |
| !!! | GATTTTTTTTTTTGGGGGGT+GGG | + | chr4_2:1623832-1623851 | Msa0583170:intron | 35.0% |
| !!! | ATTTTTTTTTTTGGGGGGTG+GGG | + | chr4_2:1623833-1623852 | Msa0583170:intron | 35.0% |
| GGGTTATTGAATGGCTTAAA+TGG | + | chr4_2:1623854-1623873 | Msa0583170:intron | 35.0% | |
| TATTGAATGGCTTAAATGGG+GGG | + | chr4_2:1623858-1623877 | Msa0583170:intron | 35.0% | |
| !! | TTTGATCTTGTTGTTGATGG+TGG | + | chr4_2:1623996-1624015 | Msa0583170:intron | 35.0% |
| !! | TTGATCTTGTTGTTGATGGT+GGG | + | chr4_2:1623997-1624016 | Msa0583170:intron | 35.0% |
| TCCAATATCCATGTTTGTGT+CGG | + | chr4_2:1624222-1624241 | Msa0583170:intron | 35.0% | |
| TCCAATATCTGTGTTTGTGT+CGG | + | chr4_2:1624590-1624609 | Msa0583170:intron | 35.0% | |
| GCACTCATACAGCTTAATTA+TGG | + | chr4_2:1624833-1624852 | Msa0583170:intron | 35.0% | |
| ! | CAACTATCATTTTCCTAGGA+CGG | - | chr4_2:1624892-1624911 | None:intergenic | 35.0% |
| ATTCAATCTCTCCACAGTTA+AGG | + | chr4_2:1624943-1624962 | Msa0583170:CDS | 35.0% | |
| !! | ATCTGTGTTGTTTGGTTTAG+AGG | + | chr4_2:1625042-1625061 | Msa0583170:CDS | 35.0% |
| !! | TCTGTGTTGTTTGGTTTAGA+GGG | + | chr4_2:1625043-1625062 | Msa0583170:CDS | 35.0% |
| !!! | AAAAGTGGTGTTTTTTCAGG+AGG | + | chr4_2:1625093-1625112 | Msa0583170:CDS | 35.0% |
| AATTGGATCATGCAATGGTT+TGG | + | chr4_2:1625289-1625308 | Msa0583170:intron | 35.0% | |
| CGAGTCTATATCAGTTGATT+TGG | + | chr4_2:1625484-1625503 | Msa0583170:CDS | 35.0% | |
| ! | TTTGGGATGCATAAGAACAA+CGG | + | chr4_2:1625542-1625561 | Msa0583170:CDS | 35.0% |
| CGAGTACACAAACATACTAA+TGG | - | chr4_2:1625811-1625830 | None:intergenic | 35.0% | |
| GTCCGGTACTATGATAAAAA+AGG | - | chr4_2:1626068-1626087 | None:intergenic | 35.0% | |
| GTCATGATTCAAACTCTGAT+AGG | + | chr4_2:1626317-1626336 | Msa0583170:intron | 35.0% | |
| ! | GTTAGGAGAGAAATTTTCTC+TGG | + | chr4_2:1626466-1626485 | Msa0583170:intron | 35.0% |
| ! | AGAGAAATTTTCTCTGGTCT+AGG | + | chr4_2:1626472-1626491 | Msa0583170:intron | 35.0% |
| TGATCTAGAAGCTCTTACAA+TGG | - | chr4_2:1626559-1626578 | None:intergenic | 35.0% | |
| GTAACACTGTATTATTGGAC+TGG | - | chr4_2:1626589-1626608 | None:intergenic | 35.0% | |
| ! | CGGAAAGAACCTTATTGATT+CGG | + | chr4_2:1626969-1626988 | Msa0583170:CDS | 35.0% |
| !! | GGAAAGAACCTTATTGATTC+GGG | + | chr4_2:1626970-1626989 | Msa0583170:CDS | 35.0% |
| GGAAGATTCACAAAGAAGTT+TGG | + | chr4_2:1627078-1627097 | Msa0583170:CDS | 35.0% | |
| CTAGATATATCTTCAGCTTC+CGG | + | chr4_2:1627126-1627145 | Msa0583170:CDS | 35.0% | |
| CTTGCGAAGAAAATTCTGAA+TGG | + | chr4_2:1627150-1627169 | Msa0583170:CDS | 35.0% | |
| TGAAAGATTAAGTTAAGCCG+GGG | - | chr4_2:1627225-1627244 | None:intergenic | 35.0% | |
| ! | TCTGTTTTCATAAGCTACCT+TGG | + | chr4_2:1627421-1627440 | Msa0583170:intron | 35.0% |
| GAGTTTATGGGAACAACTTA+TGG | - | chr4_2:1627463-1627482 | None:intergenic | 35.0% | |
| ! | ATAAACATTCGTGACTGGTT+GGG | - | chr4_2:1627487-1627506 | None:intergenic | 35.0% |
| ! | AATTTTTACGGAGTAGGAAG+AGG | + | chr4_2:1627580-1627599 | Msa0583170:intron | 35.0% |
| TTTCTGAATCATAGCTATGG+TGG | - | chr4_2:1627854-1627873 | None:intergenic | 35.0% | |
| AATGTCTAATTGTAGGTTGC+AGG | + | chr4_2:1627904-1627923 | Msa0583170:intron | 35.0% | |
| GCTGCAAATGAAATCTTCAA+TGG | - | chr4_2:1627995-1628014 | None:intergenic | 35.0% | |
| AGTCTGGAAAAATTGTTGCT+TGG | + | chr4_2:1628052-1628071 | Msa0583170:CDS | 35.0% | |
| TTGCTTGGTATTCACCAAAA+AGG | + | chr4_2:1628067-1628086 | Msa0583170:CDS | 35.0% | |
| TGAAGTGAAGTGAAGTGAAG+AGG | - | chr4_2:1622870-1622889 | None:intergenic | 40.0% | |
| ! | TGATGATGATGATGTTGTGC+GGG | - | chr4_2:1622918-1622937 | None:intergenic | 40.0% |
| CATCATCATCATCAATGGCT+AGG | + | chr4_2:1622924-1622943 | Msa0583170:exon | 40.0% | |
| !! | CAGCCATTGATTCATCATTC+TGG | + | chr4_2:1622954-1622973 | Msa0583170:CDS | 40.0% |
| GTCCCAGAATGATGAATCAA+TGG | - | chr4_2:1622960-1622979 | None:intergenic | 40.0% | |
| GGAAAATGATGAGTGATGTG+TGG | - | chr4_2:1623094-1623113 | None:intergenic | 40.0% | |
| AAGGAACCATACTCCTTCTT+GGG | - | chr4_2:1623148-1623167 | None:intergenic | 40.0% | |
| AAAGGAACCATACTCCTTCT+TGG | - | chr4_2:1623149-1623168 | None:intergenic | 40.0% | |
| TCACTTCTCCTTGATTTCAC+TGG | + | chr4_2:1623178-1623197 | Msa0583170:CDS | 40.0% | |
| AACGATGACCAGTGAAATCA+AGG | - | chr4_2:1623189-1623208 | None:intergenic | 40.0% | |
| TTGATTTCACTGGTCATCGT+TGG | + | chr4_2:1623188-1623207 | Msa0583170:CDS | 40.0% | |
| ! | AAGCTAGCTTGTAGCTTATG+GGG | + | chr4_2:1623504-1623523 | Msa0583170:intron | 40.0% |
| !! | AGGGTGGTTTCTGTTTTTCA+TGG | + | chr4_2:1623762-1623781 | Msa0583170:intron | 40.0% |
| !! | GGGTGGTTTCTGTTTTTCAT+GGG | + | chr4_2:1623763-1623782 | Msa0583170:intron | 40.0% |
| !!! | GGATTTTTTTTTTTGGGGGG+TGG | + | chr4_2:1623831-1623850 | Msa0583170:intron | 40.0% |
| !!! | TTTTTTTTTTTGGGGGGTGG+GGG | + | chr4_2:1623834-1623853 | Msa0583170:intron | 40.0% |
| ACCGACACAAACATGGATAT+TGG | - | chr4_2:1624226-1624245 | None:intergenic | 40.0% | |
| CTAAACATGTGATGTCGTGT+TGG | - | chr4_2:1624511-1624530 | None:intergenic | 40.0% | |
| ACCGACACAAACACAGATAT+TGG | - | chr4_2:1624594-1624613 | None:intergenic | 40.0% | |
| AGGAGATAAAGCAAACTGTG+AGG | - | chr4_2:1625017-1625036 | None:intergenic | 40.0% | |
| CCAAACAACACAGATGTTGA+AGG | - | chr4_2:1625037-1625056 | None:intergenic | 40.0% | |
| ! | CCTTCAACATCTGTGTTGTT+TGG | + | chr4_2:1625034-1625053 | Msa0583170:CDS | 40.0% |
| TTCTGATCACGATCTTACAG+TGG | + | chr4_2:1625406-1625425 | Msa0583170:CDS | 40.0% | |
| TTGTGGTCAACAAACAACTG+AGG | - | chr4_2:1625443-1625462 | None:intergenic | 40.0% | |
| ! | CAGTTGTTTGTTGACCACAA+AGG | + | chr4_2:1625443-1625462 | Msa0583170:CDS | 40.0% |
| TTGACCACAAAGGAAGATAC+TGG | + | chr4_2:1625453-1625472 | Msa0583170:CDS | 40.0% | |
| TGACCACAAAGGAAGATACT+GGG | + | chr4_2:1625454-1625473 | Msa0583170:CDS | 40.0% | |
| TGTTCTTATGCATCCCAAAG+CGG | - | chr4_2:1625541-1625560 | None:intergenic | 40.0% | |
| ACGATAAGATCAAGTACCTC+TGG | + | chr4_2:1625648-1625667 | Msa0583170:CDS | 40.0% | |
| ! | GCAGCAGTATCTGGAATTAT+TGG | + | chr4_2:1625740-1625759 | Msa0583170:CDS | 40.0% |
| GGATCTGGTAATACGGAATT+CGG | + | chr4_2:1626257-1626276 | Msa0583170:intron | 40.0% | |
| GTTACAAACTCCCTCACTTA+TGG | + | chr4_2:1626745-1626764 | Msa0583170:intron | 40.0% | |
| TTTCGTCATCGGTGAATTGA+TGG | + | chr4_2:1626844-1626863 | Msa0583170:intron | 40.0% | |
| TGTTAGCTCGCTAGACATTA+CGG | + | chr4_2:1626868-1626887 | Msa0583170:intron | 40.0% | |
| TTTCTTCTCTTTGACACAGC+TGG | - | chr4_2:1627003-1627022 | None:intergenic | 40.0% | |
| !! | GTTTGCTATACTTTGCAGCA+AGG | + | chr4_2:1627057-1627076 | Msa0583170:CDS | 40.0% |
| ! | CAGAATTTTCTTCGCAAGTC+CGG | - | chr4_2:1627148-1627167 | None:intergenic | 40.0% |
| !! | AGGTGTCTTTAGGCCATTTT+TGG | + | chr4_2:1627286-1627305 | Msa0583170:intron | 40.0% |
| ! | TAAACATTCGTGACTGGTTG+GGG | - | chr4_2:1627486-1627505 | None:intergenic | 40.0% |
| CATAAACATTCGTGACTGGT+TGG | - | chr4_2:1627488-1627507 | None:intergenic | 40.0% | |
| TCAGCATAAACATTCGTGAC+TGG | - | chr4_2:1627492-1627511 | None:intergenic | 40.0% | |
| AACCATGATTGTAGACACCT+TGG | + | chr4_2:1627716-1627735 | Msa0583170:intron | 40.0% | |
| CTGAAATTGGCATTGTGTTC+CGG | + | chr4_2:1627808-1627827 | Msa0583170:intron | 40.0% | |
| GAATCTGCTCGAAATACAAC+TGG | - | chr4_2:1627931-1627950 | None:intergenic | 40.0% | |
| ACCAAAAAGGAATGAAGGGA+TGG | + | chr4_2:1628080-1628099 | Msa0583170:CDS | 40.0% | |
| ! | ACCATCCCTTCATTCCTTTT+TGG | - | chr4_2:1628084-1628103 | None:intergenic | 40.0% |
| TCCACAAAACCTCGATGGTT+GGG | + | chr4_2:1622994-1623013 | Msa0583170:CDS | 45.0% | |
| ! | CTGAAGCGTCAAGAGGAATA+GGG | - | chr4_2:1623039-1623058 | None:intergenic | 45.0% |
| ! | ACTGAAGCGTCAAGAGGAAT+AGG | - | chr4_2:1623040-1623059 | None:intergenic | 45.0% |
| TGATGTGTGGGAGTTGTTGA+TGG | - | chr4_2:1623081-1623100 | None:intergenic | 45.0% | |
| GAGGAAGGGATAATGCCAAA+GGG | - | chr4_2:1623115-1623134 | None:intergenic | 45.0% | |
| TGAGGAAGGGATAATGCCAA+AGG | - | chr4_2:1623116-1623135 | None:intergenic | 45.0% | |
| !! | ATGAAGCACCGACACAAACA+TGG | - | chr4_2:1624233-1624252 | None:intergenic | 45.0% |
| ! | GCACTGACACTTCAGATTGA+AGG | + | chr4_2:1624450-1624469 | Msa0583170:intron | 45.0% |
| CTTTGCAACGTCCTTAACTG+TGG | - | chr4_2:1624957-1624976 | None:intergenic | 45.0% | |
| ! | TTGTTTGGTTTAGAGGGCCA+TGG | + | chr4_2:1625049-1625068 | Msa0583170:CDS | 45.0% |
| !! | GGCGCTTTTCTTTTTCACCA+TGG | - | chr4_2:1625069-1625088 | None:intergenic | 45.0% |
| !! | AGAAAAGCGCCGCAAAAAAG+TGG | + | chr4_2:1625078-1625097 | Msa0583170:CDS | 45.0% |
| TGATCACGATCTTACAGTGG+AGG | + | chr4_2:1625409-1625428 | Msa0583170:CDS | 45.0% | |
| CATCCCAGTATCTTCCTTTG+TGG | - | chr4_2:1625460-1625479 | None:intergenic | 45.0% | |
| !! | AGTTGATTTGGCATCCCTTG+TGG | + | chr4_2:1625496-1625515 | Msa0583170:CDS | 45.0% |
| TAAGAACAACGGTAGTCCTC+AGG | + | chr4_2:1625553-1625572 | Msa0583170:CDS | 45.0% | |
| TCAGTTGCATTAGTAGCCTG+AGG | - | chr4_2:1625572-1625591 | None:intergenic | 45.0% | |
| ! | CAAGTACCTCTGGAGAAACA+CGG | + | chr4_2:1625658-1625677 | Msa0583170:CDS | 45.0% |
| ! | GGCTTGTTTCCACATTACCA+CGG | + | chr4_2:1625701-1625720 | Msa0583170:CDS | 45.0% |
| TCCACATTACCACGGACTTA+TGG | + | chr4_2:1625709-1625728 | Msa0583170:CDS | 45.0% | |
| ! | ACCATAAGTCCGTGGTAATG+TGG | - | chr4_2:1625713-1625732 | None:intergenic | 45.0% |
| ATTCCAGATACTGCTGCATG+AGG | - | chr4_2:1625737-1625756 | None:intergenic | 45.0% | |
| GGAAAGGGGATCTGGTAATA+CGG | + | chr4_2:1626250-1626269 | Msa0583170:intron | 45.0% | |
| CTGGTAATACGGAATTCGGA+CGG | + | chr4_2:1626261-1626280 | Msa0583170:intron | 45.0% | |
| TGGTAATACGGAATTCGGAC+GGG | + | chr4_2:1626262-1626281 | Msa0583170:intron | 45.0% | |
| TTCAAACTCTGATAGGACCC+TGG | + | chr4_2:1626324-1626343 | Msa0583170:intron | 45.0% | |
| TCAAACTCTGATAGGACCCT+GGG | + | chr4_2:1626325-1626344 | Msa0583170:intron | 45.0% | |
| AAGCCTAGTGAGTGAGTCAT+TGG | + | chr4_2:1626424-1626443 | Msa0583170:intron | 45.0% | |
| AGCCTAGTGAGTGAGTCATT+GGG | + | chr4_2:1626425-1626444 | Msa0583170:intron | 45.0% | |
| TTCCCAATGACTCACTCACT+AGG | - | chr4_2:1626430-1626449 | None:intergenic | 45.0% | |
| GTTAGGAGTTCGTAGAACTC+TGG | + | chr4_2:1626507-1626526 | Msa0583170:intron | 45.0% | |
| TGTGCTTCCTGGATTTGGAA+CGG | + | chr4_2:1626949-1626968 | Msa0583170:CDS | 45.0% | |
| GTTCTTTCCGTTCCAAATCC+AGG | - | chr4_2:1626959-1626978 | None:intergenic | 45.0% | |
| !! | GAACCTTATTGATTCGGGAG+AGG | + | chr4_2:1626975-1626994 | Msa0583170:CDS | 45.0% |
| GATCCTCTCCCGAATCAATA+AGG | - | chr4_2:1626981-1627000 | None:intergenic | 45.0% | |
| AGAAGTTTGGGGACTTAACC+CGG | + | chr4_2:1627091-1627110 | Msa0583170:CDS | 45.0% | |
| TATCTAGACGAGCATCTACC+CGG | - | chr4_2:1627113-1627132 | None:intergenic | 45.0% | |
| AAGCTACCTTGGAGAGCTTA+TGG | + | chr4_2:1627432-1627451 | Msa0583170:intron | 45.0% | |
| ! | AAACATTCGTGACTGGTTGG+GGG | - | chr4_2:1627485-1627504 | None:intergenic | 45.0% |
| ! | AGCCAAGGTGTCTACAATCA+TGG | - | chr4_2:1627721-1627740 | None:intergenic | 45.0% |
| ATTGGCATTGTGTTCCGGAT+CGG | + | chr4_2:1627813-1627832 | Msa0583170:intron | 45.0% | |
| !! | ACTCCACATCGCTAGCTTTA+GGG | - | chr4_2:1628035-1628054 | None:intergenic | 45.0% |
| TCCTCTCCACAAAACCTCGA+TGG | + | chr4_2:1622989-1623008 | Msa0583170:CDS | 50.0% | |
| !! | ACCATCGAGGTTTTGTGGAG+AGG | - | chr4_2:1622993-1623012 | None:intergenic | 50.0% |
| CTCCACAAAACCTCGATGGT+TGG | + | chr4_2:1622993-1623012 | Msa0583170:CDS | 50.0% | |
| AGGGTCACCAGGAACAAACT+TGG | - | chr4_2:1623020-1623039 | None:intergenic | 50.0% | |
| TCAAGAGGAATAGGGTCACC+AGG | - | chr4_2:1623031-1623050 | None:intergenic | 50.0% | |
| ! | CTGGAAACTGAAGCGTCAAG+AGG | - | chr4_2:1623046-1623065 | None:intergenic | 50.0% |
| !! | TTGATGGCGATAGAGTCTGC+TGG | - | chr4_2:1623065-1623084 | None:intergenic | 50.0% |
| CCATACTCCTTCTTGGGAGA+AGG | - | chr4_2:1623142-1623161 | None:intergenic | 50.0% | |
| CCTTCTCCCAAGAAGGAGTA+TGG | + | chr4_2:1623139-1623158 | Msa0583170:CDS | 50.0% | |
| ! | TATAGGTGGCTTGCAGCAAC+TGG | + | chr4_2:1624860-1624879 | Msa0583170:intron | 50.0% |
| CAACTGGACAATTCCGTCCT+AGG | + | chr4_2:1624876-1624895 | Msa0583170:CDS | 50.0% | |
| ATCTTACAGTGGAGGCAGCA+TGG | + | chr4_2:1625417-1625436 | Msa0583170:CDS | 50.0% | |
| ATCGTAAGTAACAGCCGCCT+TGG | - | chr4_2:1625633-1625652 | None:intergenic | 50.0% | |
| GAGACTGAGGAGGAATACGA+AGG | + | chr4_2:1625680-1625699 | Msa0583170:CDS | 50.0% | |
| ! | CATGAGGTACCATAAGTCCG+TGG | - | chr4_2:1625721-1625740 | None:intergenic | 50.0% |
| GTACCTCATGCAGCAGTATC+TGG | + | chr4_2:1625731-1625750 | Msa0583170:CDS | 50.0% | |
| GTCTTAACCTCTGGTCCCTA+GGG | + | chr4_2:1626228-1626247 | Msa0583170:intron | 50.0% | |
| TCTTAACCTCTGGTCCCTAG+GGG | + | chr4_2:1626229-1626248 | Msa0583170:intron | 50.0% | |
| TAATACGGAATTCGGACGGG+AGG | + | chr4_2:1626265-1626284 | Msa0583170:intron | 50.0% | |
| TCTGATAGGACCCTGGGTTT+GGG | + | chr4_2:1626331-1626350 | Msa0583170:intron | 50.0% | |
| TGGATTAAGGCCCAAACCCA+GGG | - | chr4_2:1626344-1626363 | None:intergenic | 50.0% | |
| TTGGATTAAGGCCCAAACCC+AGG | - | chr4_2:1626345-1626364 | None:intergenic | 50.0% | |
| ! | TGGGACATCCCCTGAGTTTT+AGG | + | chr4_2:1626376-1626395 | Msa0583170:intron | 50.0% |
| ACGAACTCCTAACCAGAGCT+AGG | - | chr4_2:1626500-1626519 | None:intergenic | 50.0% | |
| ! | GTTCCAAATCCAGGAAGCAC+AGG | - | chr4_2:1626950-1626969 | None:intergenic | 50.0% |
| GAAGTTTGGGGACTTAACCC+GGG | + | chr4_2:1627092-1627111 | Msa0583170:CDS | 50.0% | |
| ATCTAGACGAGCATCTACCC+GGG | - | chr4_2:1627112-1627131 | None:intergenic | 50.0% | |
| GATTAAGTTAAGCCGGGGTG+AGG | - | chr4_2:1627220-1627239 | None:intergenic | 50.0% | |
| GCATGTCCATAAGCTCTCCA+AGG | - | chr4_2:1627441-1627460 | None:intergenic | 50.0% | |
| ! | GACTGGTTGGGGGAGTTTAT+GGG | - | chr4_2:1627475-1627494 | None:intergenic | 50.0% |
| ! | TGACTGGTTGGGGGAGTTTA+TGG | - | chr4_2:1627476-1627495 | None:intergenic | 50.0% |
| TGACCCTAAAGCTAGCGATG+TGG | + | chr4_2:1628029-1628048 | Msa0583170:CDS | 50.0% | |
| !! | GACTCCACATCGCTAGCTTT+AGG | - | chr4_2:1628036-1628055 | None:intergenic | 50.0% |
| AAAGCTAGCGATGTGGAGTC+TGG | + | chr4_2:1628036-1628055 | Msa0583170:CDS | 50.0% | |
| ! | GCCCAACCATCGAGGTTTTG+TGG | - | chr4_2:1622998-1623017 | None:intergenic | 55.0% |
| CAAACTTGGCCCAACCATCG+AGG | - | chr4_2:1623006-1623025 | None:intergenic | 55.0% | |
| ! | GGTTGGGCCAAGTTTGTTCC+TGG | + | chr4_2:1623010-1623029 | Msa0583170:CDS | 55.0% |
| TGGGAGAAGGAGCTGAGGAA+GGG | - | chr4_2:1623129-1623148 | None:intergenic | 55.0% | |
| TTGGGAGAAGGAGCTGAGGA+AGG | - | chr4_2:1623130-1623149 | None:intergenic | 55.0% | |
| CTTCTTGGGAGAAGGAGCTG+AGG | - | chr4_2:1623134-1623153 | None:intergenic | 55.0% | |
| CTCAGCTCCTTCTCCCAAGA+AGG | + | chr4_2:1623132-1623151 | Msa0583170:CDS | 55.0% | |
| TGGCTTAAATGGGGGGCAGT+AGG | + | chr4_2:1623865-1623884 | Msa0583170:intron | 55.0% | |
| GGCTTAAATGGGGGGCAGTA+GGG | + | chr4_2:1623866-1623885 | Msa0583170:intron | 55.0% | |
| GCTTAAATGGGGGGCAGTAG+GGG | + | chr4_2:1623867-1623886 | Msa0583170:intron | 55.0% | |
| GGGGATTGCGATACCGCTTT+GGG | + | chr4_2:1625525-1625544 | Msa0583170:CDS | 55.0% | |
| AACCCTGGCAGTAGAGACAG+CGG | - | chr4_2:1625605-1625624 | None:intergenic | 55.0% | |
| ACTGCCAGGGTTATGTGCCA+AGG | + | chr4_2:1625613-1625632 | Msa0583170:CDS | 55.0% | |
| CAGTCTCCGTGTTTCTCCAG+AGG | - | chr4_2:1625667-1625686 | None:intergenic | 55.0% | |
| CTGGAGAAACACGGAGACTG+AGG | + | chr4_2:1625667-1625686 | Msa0583170:CDS | 55.0% | |
| GAGAAACACGGAGACTGAGG+AGG | + | chr4_2:1625670-1625689 | Msa0583170:CDS | 55.0% | |
| GGTCTTAACCTCTGGTCCCT+AGG | + | chr4_2:1626227-1626246 | Msa0583170:intron | 55.0% | |
| ACCAGATCCCCTTTCCCCTA+GGG | - | chr4_2:1626246-1626265 | None:intergenic | 55.0% | |
| TACCAGATCCCCTTTCCCCT+AGG | - | chr4_2:1626247-1626266 | None:intergenic | 55.0% | |
| CTCTGATAGGACCCTGGGTT+TGG | + | chr4_2:1626330-1626349 | Msa0583170:intron | 55.0% | |
| !! | CTAGGAGCCTAGCTCTGGTT+AGG | + | chr4_2:1626490-1626509 | Msa0583170:intron | 55.0% |
| GCTCCTGTGCTTCCTGGATT+TGG | + | chr4_2:1626944-1626963 | Msa0583170:CDS | 55.0% | |
| GGGGGGTGGGGGTTATTGAA+TGG | + | chr4_2:1623845-1623864 | Msa0583170:intron | 60.0% | |
| TGGCATCCCTTGTGGCTCGT+CGG | + | chr4_2:1625504-1625523 | Msa0583170:CDS | 60.0% | |
| CAATCCCCGACGAGCCACAA+GGG | - | chr4_2:1625513-1625532 | None:intergenic | 60.0% | |
| CGGGGATTGCGATACCGCTT+TGG | + | chr4_2:1625524-1625543 | Msa0583170:CDS | 60.0% | |
| ACACCGCTGTCTCTACTGCC+AGG | + | chr4_2:1625599-1625618 | Msa0583170:CDS | 60.0% | |
| CACCGCTGTCTCTACTGCCA+GGG | + | chr4_2:1625600-1625619 | Msa0583170:CDS | 60.0% | |
| GCCAGGGTTATGTGCCAAGG+CGG | + | chr4_2:1625616-1625635 | Msa0583170:CDS | 60.0% | |
| ACCTCTGGTCCCTAGGGGAA+AGG | + | chr4_2:1626234-1626253 | Msa0583170:intron | 60.0% | |
| CCTCTGGTCCCTAGGGGAAA+GGG | + | chr4_2:1626235-1626254 | Msa0583170:intron | 60.0% | |
| CTCTGGTCCCTAGGGGAAAG+GGG | + | chr4_2:1626236-1626255 | Msa0583170:intron | 60.0% | |
| TCCCTAGGGGAAAGGGGATC+TGG | + | chr4_2:1626242-1626261 | Msa0583170:intron | 60.0% | |
| CTGGTCTAGGAGCCTAGCTC+TGG | + | chr4_2:1626485-1626504 | Msa0583170:intron | 60.0% | |
| CAGGTAGCTCCTGTGCTTCC+TGG | + | chr4_2:1626938-1626957 | Msa0583170:intron | 60.0% | |
| TTAAGCCGGGGTGAGGCTGA+CGG | - | chr4_2:1627213-1627232 | None:intergenic | 60.0% | |
| GGCATCCCTTGTGGCTCGTC+GGG | + | chr4_2:1625505-1625524 | Msa0583170:CDS | 65.0% | |
| GCATCCCTTGTGGCTCGTCG+GGG | + | chr4_2:1625506-1625525 | Msa0583170:CDS | 65.0% | |
| GCAATCCCCGACGAGCCACA+AGG | - | chr4_2:1625514-1625533 | None:intergenic | 65.0% | |
| GCCGCCTTGGCACATAACCC+TGG | - | chr4_2:1625620-1625639 | None:intergenic | 65.0% | |
| CCCTTTCCCCTAGGGACCAG+AGG | - | chr4_2:1626238-1626257 | None:intergenic | 65.0% | |
| AACGACCGTCAGCCTCACCC+CGG | + | chr4_2:1627205-1627224 | Msa0583170:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 1622841 | 1628413 | 1622841 | ID=Msa0583170;Name=Msa0583170 |
| chr4_2 | mRNA | 1622841 | 1628413 | 1622841 | ID=Msa0583170-mRNA-1;Parent=Msa0583170;Name=Msa0583170-mRNA-1;_AED=0.04;_eAED=0.04;_QI=97|0.75|0.8|1|1|1|5|285|447 |
| chr4_2 | exon | 1622841 | 1623209 | 1622841 | ID=Msa0583170-mRNA-1:exon:426;Parent=Msa0583170-mRNA-1 |
| chr4_2 | exon | 1624865 | 1625114 | 1624865 | ID=Msa0583170-mRNA-1:exon:427;Parent=Msa0583170-mRNA-1 |
| chr4_2 | exon | 1625404 | 1625761 | 1625404 | ID=Msa0583170-mRNA-1:exon:428;Parent=Msa0583170-mRNA-1 |
| chr4_2 | exon | 1626941 | 1627194 | 1626941 | ID=Msa0583170-mRNA-1:exon:429;Parent=Msa0583170-mRNA-1 |
| chr4_2 | exon | 1627919 | 1628413 | 1627919 | ID=Msa0583170-mRNA-1:exon:430;Parent=Msa0583170-mRNA-1 |
| chr4_2 | five_prime_UTR | 1622841 | 1622937 | 1622841 | ID=Msa0583170-mRNA-1:five_prime_utr;Parent=Msa0583170-mRNA-1 |
| chr4_2 | CDS | 1622938 | 1623209 | 1622938 | ID=Msa0583170-mRNA-1:cds;Parent=Msa0583170-mRNA-1 |
| chr4_2 | CDS | 1624865 | 1625114 | 1624865 | ID=Msa0583170-mRNA-1:cds;Parent=Msa0583170-mRNA-1 |
| chr4_2 | CDS | 1625404 | 1625761 | 1625404 | ID=Msa0583170-mRNA-1:cds;Parent=Msa0583170-mRNA-1 |
| chr4_2 | CDS | 1626941 | 1627194 | 1626941 | ID=Msa0583170-mRNA-1:cds;Parent=Msa0583170-mRNA-1 |
| chr4_2 | CDS | 1627919 | 1628128 | 1627919 | ID=Msa0583170-mRNA-1:cds;Parent=Msa0583170-mRNA-1 |
| chr4_2 | three_prime_UTR | 1628129 | 1628413 | 1628129 | ID=Msa0583170-mRNA-1:three_prime_utr;Parent=Msa0583170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
