Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835520 | XP_003611626.2 | 96.846 | 539 | 8 | 1 | 1 | 539 | 1 | 530 | 0.0 | 1070 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835520 | sp|Q9SZV0|RNC1_ARATH | 78.304 | 507 | 99 | 3 | 34 | 539 | 41 | 537 | 0.0 | 827 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835520 | G7K3W4 | 96.846 | 539 | 8 | 1 | 1 | 539 | 1 | 530 | 0.0 | 1070 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000780 | Msa0835520 | 0.812302 | 4.539903e-51 | -8.615850e-47 |
| Msa0026110 | Msa0835520 | 0.845052 | 5.166208e-59 | -8.615850e-47 |
| Msa0032120 | Msa0835520 | 0.817315 | 3.515583e-52 | -8.615850e-47 |
| Msa0032400 | Msa0835520 | 0.814900 | 1.217187e-51 | -8.615850e-47 |
| Msa0048020 | Msa0835520 | 0.806148 | 9.469485e-50 | -8.615850e-47 |
| Msa0050720 | Msa0835520 | 0.809045 | 2.297315e-50 | -8.615850e-47 |
| Msa0050770 | Msa0835520 | 0.811990 | 5.310747e-51 | -8.615850e-47 |
| Msa0056520 | Msa0835520 | 0.832671 | 8.275083e-56 | -8.615850e-47 |
| Msa0056690 | Msa0835520 | 0.835738 | 1.409034e-56 | -8.615850e-47 |
| Msa0073820 | Msa0835520 | 0.831087 | 2.036576e-55 | -8.615850e-47 |
| Msa0084680 | Msa0835520 | 0.800230 | 1.589113e-48 | -8.615850e-47 |
| Msa0621120 | Msa0835520 | 0.812905 | 3.350457e-51 | -8.615850e-47 |
| Msa0629290 | Msa0835520 | 0.822145 | 2.771048e-53 | -8.615850e-47 |
| Msa0639370 | Msa0835520 | 0.879578 | 1.111197e-69 | -8.615850e-47 |
| Msa0661240 | Msa0835520 | 0.831248 | 1.858769e-55 | -8.615850e-47 |
| Msa0682460 | Msa0835520 | 0.827500 | 1.511997e-54 | -8.615850e-47 |
| Msa0688370 | Msa0835520 | 0.810268 | 1.254340e-50 | -8.615850e-47 |
| Msa0714030 | Msa0835520 | 0.901677 | 2.104093e-78 | -8.615850e-47 |
| Msa0714170 | Msa0835520 | 0.901704 | 2.045802e-78 | -8.615850e-47 |
| Msa0727170 | Msa0835520 | 0.804235 | 2.381044e-49 | -8.615850e-47 |
| Msa0728280 | Msa0835520 | 0.853307 | 2.605123e-61 | -8.615850e-47 |
| Msa0728380 | Msa0835520 | 0.842094 | 3.188779e-58 | -8.615850e-47 |
| Msa0728540 | Msa0835520 | 0.849863 | 2.461177e-60 | -8.615850e-47 |
| Msa0746600 | Msa0835520 | 0.802505 | 5.435219e-49 | -8.615850e-47 |
| Msa0756470 | Msa0835520 | 0.931987 | 1.672298e-94 | -8.615850e-47 |
| Msa0764020 | Msa0835520 | 0.809574 | 1.769223e-50 | -8.615850e-47 |
| Msa0767520 | Msa0835520 | 0.860133 | 2.554389e-63 | -8.615850e-47 |
| Msa0769830 | Msa0835520 | 0.800458 | 1.427950e-48 | -8.615850e-47 |
| Msa0776480 | Msa0835520 | 0.856126 | 3.971709e-62 | -8.615850e-47 |
| Msa0780140 | Msa0835520 | 0.816190 | 6.283425e-52 | -8.615850e-47 |
| Msa0783340 | Msa0835520 | 0.815467 | 9.109607e-52 | -8.615850e-47 |
| Msa0802210 | Msa0835520 | 0.815399 | 9.432537e-52 | -8.615850e-47 |
| Msa0805940 | Msa0835520 | 0.800338 | 1.510193e-48 | -8.615850e-47 |
| Msa0806720 | Msa0835520 | 0.814017 | 1.907975e-51 | -8.615850e-47 |
| Msa0806760 | Msa0835520 | 0.807950 | 3.934768e-50 | -8.615850e-47 |
| Msa0819440 | Msa0835520 | 0.806437 | 8.231501e-50 | -8.615850e-47 |
| Msa0824140 | Msa0835520 | 0.822260 | 2.605058e-53 | -8.615850e-47 |
| Msa0835520 | Msa0843690 | 0.837478 | 5.075368e-57 | -8.615850e-47 |
| Msa0835520 | Msa0848360 | 0.804318 | 2.288315e-49 | -8.615850e-47 |
| Msa0835520 | Msa0848760 | 0.805127 | 1.550839e-49 | -8.615850e-47 |
| Msa0835520 | Msa0863250 | 0.811893 | 5.574968e-51 | -8.615850e-47 |
| Msa0835520 | Msa0880220 | 0.814774 | 1.298004e-51 | -8.615850e-47 |
| Msa0835520 | Msa0885820 | 0.810646 | 1.039516e-50 | -8.615850e-47 |
| Msa0835520 | Msa0913090 | 0.816029 | 6.824925e-52 | -8.615850e-47 |
| Msa0835520 | Msa0945960 | 0.808166 | 3.540299e-50 | -8.615850e-47 |
| Msa0835520 | Msa0950320 | 0.821074 | 4.897781e-53 | -8.615850e-47 |
| Msa0835520 | Msa1004210 | 0.811340 | 7.354150e-51 | -8.615850e-47 |
| Msa0835520 | Msa1033790 | 0.830666 | 2.582634e-55 | -8.615850e-47 |
| Msa0835520 | Msa1035510 | 0.828661 | 7.942537e-55 | -8.615850e-47 |
| Msa0835520 | Msa1041410 | -0.808319 | 3.282708e-50 | -8.615850e-47 |
| Msa0835520 | Msa1046610 | 0.815192 | 1.048322e-51 | -8.615850e-47 |
| Msa0835520 | Msa1072340 | 0.812963 | 3.254669e-51 | -8.615850e-47 |
| Msa0835520 | Msa1073840 | 0.813770 | 2.163730e-51 | -8.615850e-47 |
| Msa0835520 | Msa1075420 | 0.865635 | 5.119754e-65 | -8.615850e-47 |
| Msa0835520 | Msa1080840 | 0.814939 | 1.193158e-51 | -8.615850e-47 |
| Msa0835520 | Msa1111630 | 0.811607 | 6.434389e-51 | -8.615850e-47 |
| Msa0835520 | Msa1116550 | 0.840968 | 6.316027e-58 | -8.615850e-47 |
| Msa0835520 | Msa1118150 | 0.822262 | 2.602469e-53 | -8.615850e-47 |
| Msa0835520 | Msa1118980 | 0.812820 | 3.498356e-51 | -8.615850e-47 |
| Msa0835520 | Msa1163050 | 0.856217 | 3.733988e-62 | -8.615850e-47 |
| Msa0835520 | Msa1166600 | -0.808052 | 3.742110e-50 | -8.615850e-47 |
| Msa0835520 | Msa1177240 | 0.858660 | 7.073030e-63 | -8.615850e-47 |
| Msa0835520 | Msa1235150 | 0.803268 | 3.780566e-49 | -8.615850e-47 |
| Msa0835520 | Msa1259470 | 0.822356 | 2.474837e-53 | -8.615850e-47 |
| Msa0835520 | Msa1281270 | 0.839282 | 1.739130e-57 | -8.615850e-47 |
| Msa0835520 | Msa1309960 | 0.821260 | 4.437094e-53 | -8.615850e-47 |
| Msa0835520 | Msa1317030 | 0.859853 | 3.103305e-63 | -8.615850e-47 |
| Msa0835520 | Msa1320380 | 0.835010 | 2.152191e-56 | -8.615850e-47 |
| Msa0835520 | Msa1375340 | 0.821759 | 3.403333e-53 | -8.615850e-47 |
| Msa0835520 | Msa1376350 | 0.806531 | 7.861408e-50 | -8.615850e-47 |
| Msa0835520 | Msa1388240 | 0.909669 | 4.409202e-82 | -8.615850e-47 |
| Msa0835520 | Msa1398480 | 0.819524 | 1.110346e-52 | -8.615850e-47 |
| Msa0835520 | Msa1420520 | 0.809965 | 1.457578e-50 | -8.615850e-47 |
| Msa0835520 | Msa1421870 | 0.806158 | 9.424418e-50 | -8.615850e-47 |
| Msa0835520 | Msa1440610 | 0.805813 | 1.113520e-49 | -8.615850e-47 |
| Msa0835520 | Msa1447230 | 0.803638 | 3.168394e-49 | -8.615850e-47 |
| Msa0835520 | Msa1447300 | 0.841120 | 5.760093e-58 | -8.615850e-47 |
| Msa0835520 | Msa1460440 | 0.848668 | 5.293889e-60 | -8.615850e-47 |
| Msa0121800 | Msa0835520 | 0.869482 | 2.994796e-66 | -8.615850e-47 |
| Msa0140290 | Msa0835520 | 0.817019 | 4.097740e-52 | -8.615850e-47 |
| Msa0141430 | Msa0835520 | 0.802908 | 4.488290e-49 | -8.615850e-47 |
| Msa0166570 | Msa0835520 | 0.876348 | 1.500111e-68 | -8.615850e-47 |
| Msa0171780 | Msa0835520 | 0.810141 | 1.336106e-50 | -8.615850e-47 |
| Msa0171920 | Msa0835520 | 0.854689 | 1.041461e-61 | -8.615850e-47 |
| Msa0171930 | Msa0835520 | 0.823500 | 1.339838e-53 | -8.615850e-47 |
| Msa0185700 | Msa0835520 | 0.817898 | 2.597357e-52 | -8.615850e-47 |
| Msa0378080 | Msa0835520 | 0.813129 | 2.991929e-51 | -8.615850e-47 |
| Msa0380650 | Msa0835520 | 0.828061 | 1.108002e-54 | -8.615850e-47 |
| Msa0384430 | Msa0835520 | 0.810405 | 1.172000e-50 | -8.615850e-47 |
| Msa0390060 | Msa0835520 | 0.825721 | 4.015893e-54 | -8.615850e-47 |
| Msa0392210 | Msa0835520 | 0.849594 | 2.924633e-60 | -8.615850e-47 |
| Msa0418430 | Msa0835520 | 0.807314 | 5.370546e-50 | -8.615850e-47 |
| Msa0430290 | Msa0835520 | 0.829268 | 5.660788e-55 | -8.615850e-47 |
| Msa0468160 | Msa0835520 | 0.829956 | 3.851019e-55 | -8.615850e-47 |
| Msa0470180 | Msa0835520 | 0.830012 | 3.730812e-55 | -8.615850e-47 |
| Msa0481490 | Msa0835520 | 0.833589 | 4.891063e-56 | -8.615850e-47 |
| Msa0239660 | Msa0835520 | 0.805415 | 1.349922e-49 | -8.615850e-47 |
| Msa0267340 | Msa0835520 | 0.846971 | 1.552985e-59 | -8.615850e-47 |
| Msa0277640 | Msa0835520 | 0.801697 | 7.966742e-49 | -8.615850e-47 |
| Msa0298970 | Msa0835520 | 0.809527 | 1.810468e-50 | -8.615850e-47 |
| Msa0323990 | Msa0835520 | 0.810238 | 1.273310e-50 | -8.615850e-47 |
| Msa0346980 | Msa0835520 | 0.842208 | 2.975958e-58 | -8.615850e-47 |
| Msa0358170 | Msa0835520 | 0.819354 | 1.214021e-52 | -8.615850e-47 |
| Msa0487770 | Msa0835520 | 0.836021 | 1.194204e-56 | -8.615850e-47 |
| Msa0516450 | Msa0835520 | 0.802809 | 4.703523e-49 | -8.615850e-47 |
| Msa0518040 | Msa0835520 | 0.825515 | 4.495139e-54 | -8.615850e-47 |
| Msa0522660 | Msa0835520 | 0.845887 | 3.068456e-59 | -8.615850e-47 |
| Msa0546840 | Msa0835520 | 0.839191 | 1.836237e-57 | -8.615850e-47 |
| Msa0571610 | Msa0835520 | 0.848116 | 7.524056e-60 | -8.615850e-47 |
| Msa0583170 | Msa0835520 | 0.812865 | 3.419201e-51 | -8.615850e-47 |
| Msa0583740 | Msa0835520 | 0.855116 | 7.827281e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835520 | MtrunA17_Chr5g0401461 | 96.104 | 539 | 8 | 1 | 1 | 539 | 1 | 526 | 0.0 | 1061 |
| Msa0835520 | MtrunA17_Chr4g0053831 | 71.068 | 515 | 128 | 6 | 26 | 537 | 23 | 519 | 0.0 | 756 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835520 | AT4G37510.1 | 78.304 | 507 | 99 | 3 | 34 | 539 | 41 | 537 | 0.0 | 827 |
| Msa0835520 | AT2G48121.2 | 75.325 | 77 | 19 | 0 | 463 | 539 | 1 | 77 | 5.00e-34 | 124 |
| Msa0835520 | AT2G48121.1 | 75.000 | 56 | 14 | 0 | 484 | 539 | 20 | 75 | 6.59e-22 | 90.1 |
Find 146 sgRNAs with CRISPR-Local
Find 335 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATCGTAGGTCGGTATTT+TGG | 0.109591 | 5_4:+8910456 | Msa0835520:intron |
| GTTTGATACTTTGTTGTATT+TGG | 0.144675 | 5_4:+8909288 | Msa0835520:CDS |
| GGACTCTCATATCTTGTTTA+TGG | 0.145537 | 5_4:+8913108 | Msa0835520:CDS |
| AATGAGAAGTTAGTTGGTTT+TGG | 0.179441 | 5_4:-8908839 | None:intergenic |
| GCAAGATATTGTTGCTTATA+AGG | 0.188751 | 5_4:+8910646 | Msa0835520:CDS |
| CCGATGAGGGAGAGAGTTTA+TGG | 0.193361 | 5_4:+8909454 | Msa0835520:CDS |
| GGAGGGGTTGTGAAGATTAA+TGG | 0.211332 | 5_4:-8908729 | None:intergenic |
| TTCCTGGCTTCGGTAATTTC+TGG | 0.213137 | 5_4:-8911058 | None:intergenic |
| GGGTTTGTGTTGCTGGGTTT+TGG | 0.218590 | 5_4:-8908651 | None:intergenic |
| GATTATTTGAAAATTCAATT+TGG | 0.228145 | 5_4:+8913492 | Msa0835520:three_prime_UTR |
| CATTGTAGATGAAGGGGTTT+GGG | 0.240337 | 5_4:-8908674 | None:intergenic |
| GATATTTCCGTATGATAATA+TGG | 0.253902 | 5_4:+8909534 | Msa0835520:CDS |
| TCTCATATTTAGACCTCTTT+AGG | 0.265901 | 5_4:-8913186 | None:intergenic |
| GGGGCAATCTATCTTTGTTT+TGG | 0.268972 | 5_4:+8910488 | Msa0835520:CDS |
| TTAACAATGCCGATAAATTA+TGG | 0.272123 | 5_4:+8909176 | Msa0835520:CDS |
| CGTTGAGGATTGTTATTTCT+AGG | 0.287707 | 5_4:-8908971 | None:intergenic |
| TTGATAGTGGAAAATAAAAT+TGG | 0.288695 | 5_4:-8908750 | None:intergenic |
| GACTCTCATATCTTGTTTAT+GGG | 0.294493 | 5_4:+8913109 | Msa0835520:CDS |
| AAGAGGGTAGTTTCGGGATT+TGG | 0.302484 | 5_4:-8908909 | None:intergenic |
| ATCGATTCAGAGGAAATATA+TGG | 0.308151 | 5_4:+8910969 | Msa0835520:CDS |
| GATGAGAATGAGAAGTTAGT+TGG | 0.309923 | 5_4:-8908845 | None:intergenic |
| ATGTTAGGTCTGGGCATTCT+AGG | 0.312555 | 5_4:+8909350 | Msa0835520:CDS |
| AAAAGAACACGGTAGACTTC+TGG | 0.315797 | 5_4:-8910515 | None:intergenic |
| ATTCTGTCTGTCATTTCTAA+TGG | 0.317291 | 5_4:-8911034 | None:intergenic |
| ATTATTTGAAAATTCAATTT+GGG | 0.324240 | 5_4:+8913493 | Msa0835520:three_prime_UTR |
| GAGGGGTTGTGAAGATTAAT+GGG | 0.325613 | 5_4:-8908728 | None:intergenic |
| GGTAGACAAGAACTTAATAA+TGG | 0.332729 | 5_4:-8909142 | None:intergenic |
| ACATTGTAGATGAAGGGGTT+TGG | 0.336926 | 5_4:-8908675 | None:intergenic |
| GAGAGAGTTTATGGGTTGAT+TGG | 0.340372 | 5_4:+8909463 | Msa0835520:CDS |
| TGTACTCTACTTGTTAGAAC+TGG | 0.344400 | 5_4:+8913358 | Msa0835520:three_prime_UTR |
| TGATTAACAGCTGTTGTGGC+TGG | 0.347745 | 5_4:-8913075 | None:intergenic |
| CTCATCTATCCATAATTTAT+CGG | 0.347797 | 5_4:-8909185 | None:intergenic |
| TGCTCAAATTTGTACTTTGA+TGG | 0.350401 | 5_4:-8911817 | None:intergenic |
| CAACGTGAAGAGGGTAGTTT+CGG | 0.362738 | 5_4:-8908916 | None:intergenic |
| AGTTTGAAAACAAGCTAAAC+TGG | 0.389097 | 5_4:+8910624 | Msa0835520:CDS |
| AGAGCTTGGACTTGGATTGC+AGG | 0.389569 | 5_4:+8911084 | Msa0835520:CDS |
| ATAATTTATCGGCATTGTTA+AGG | 0.390095 | 5_4:-8909174 | None:intergenic |
| ATCTCTGTTCCGGTTATCTA+AGG | 0.390223 | 5_4:-8913384 | None:intergenic |
| AAGTCCAAGCTCTATGTTCC+TGG | 0.390461 | 5_4:-8911074 | None:intergenic |
| GGCTGGCAATCCTCATCATC+TGG | 0.399583 | 5_4:-8910557 | None:intergenic |
| AAGCTCTATGTTCCTGGCTT+CGG | 0.400967 | 5_4:-8911068 | None:intergenic |
| GAACAAAGACGAAGCATGTT+AGG | 0.401968 | 5_4:+8909335 | Msa0835520:CDS |
| ATCCAAGTGCTCTCATAACT+TGG | 0.404958 | 5_4:-8911009 | None:intergenic |
| AATAAAACGGTGAAGCTGTT+TGG | 0.409551 | 5_4:-8912998 | None:intergenic |
| ATGTATCCTCATCTCTGTTC+CGG | 0.413416 | 5_4:-8913394 | None:intergenic |
| CAACAAAGTATCAAACTGTT+TGG | 0.422950 | 5_4:-8909281 | None:intergenic |
| AGGGCAATATGTGCTGGAAT+TGG | 0.425669 | 5_4:+8909384 | Msa0835520:CDS |
| TGGCTGGGTTTCTCCGTCTC+CGG | 0.431775 | 5_4:-8913059 | None:intergenic |
| AAGACGAAGCATGTTAGGTC+TGG | 0.432221 | 5_4:+8909340 | Msa0835520:CDS |
| AGGAACATAGAGCTTGGACT+TGG | 0.433949 | 5_4:+8911076 | Msa0835520:CDS |
| ATTTAGATGCTCCTGGGTTG+TGG | 0.437257 | 5_4:+8912917 | Msa0835520:CDS |
| AACTGGGCTCCTTAGATAAC+CGG | 0.438291 | 5_4:+8913375 | Msa0835520:three_prime_UTR |
| ATGAAGCATTTAGATGCTCC+TGG | 0.439342 | 5_4:+8912910 | Msa0835520:CDS |
| AGAGAGTTTATGGGTTGATT+GGG | 0.442300 | 5_4:+8909464 | Msa0835520:CDS |
| TGAACCATCAGACACATTAG+AGG | 0.448502 | 5_4:+8909246 | Msa0835520:CDS |
| ACTCTCCATGGCTCAGATCA+TGG | 0.450343 | 5_4:+8913434 | Msa0835520:three_prime_UTR |
| GTAGACAAGAACTTAATAAT+GGG | 0.452131 | 5_4:-8909141 | None:intergenic |
| TTTCTTAGGGCAATATGTGC+TGG | 0.453869 | 5_4:+8909378 | Msa0835520:CDS |
| CCCCAAGTTATGAGAGCACT+TGG | 0.454535 | 5_4:+8911007 | Msa0835520:CDS |
| AAACCGCTTATGAGCGCAAC+CGG | 0.458052 | 5_4:+8913040 | Msa0835520:CDS |
| GTTGTTTGCGCTCCCTAGGC+TGG | 0.460379 | 5_4:-8910574 | None:intergenic |
| TCAAGTTGTTTGCGCTCCCT+AGG | 0.462470 | 5_4:-8910578 | None:intergenic |
| GTTTGAAGATTGAATTGTGC+TGG | 0.462819 | 5_4:-8908779 | None:intergenic |
| GGAAGGAGAATTTGCCTAAG+TGG | 0.464839 | 5_4:+8909485 | Msa0835520:CDS |
| AAAGTATCAAACTGTTTGGC+AGG | 0.468742 | 5_4:-8909277 | None:intergenic |
| AGATTAATGGGATTGATTTG+TGG | 0.469630 | 5_4:-8908716 | None:intergenic |
| CCTCTGAATCGATGCATGCC+AGG | 0.470072 | 5_4:-8910959 | None:intergenic |
| ACTGCTTGTTCTACTCTCCA+TGG | 0.470450 | 5_4:+8913422 | Msa0835520:three_prime_UTR |
| TTTGAGAGATTAGAATATGT+TGG | 0.474238 | 5_4:+8911853 | Msa0835520:CDS |
| GATTAACAGCTGTTGTGGCT+GGG | 0.475840 | 5_4:-8913074 | None:intergenic |
| CGATGAGGGAGAGAGTTTAT+GGG | 0.478368 | 5_4:+8909455 | Msa0835520:CDS |
| AAAATTAGAACTTACTTGAC+AGG | 0.483319 | 5_4:-8909586 | None:intergenic |
| TCCAAGTGCTCTCATAACTT+GGG | 0.485073 | 5_4:-8911008 | None:intergenic |
| TTGGATGGGGAAAGGAGAGA+AGG | 0.485624 | 5_4:-8908870 | None:intergenic |
| TGAGCAGATTCAGCCTAAAG+AGG | 0.487808 | 5_4:+8913173 | Msa0835520:CDS |
| AACGTGAAGAGGGTAGTTTC+GGG | 0.488808 | 5_4:-8908915 | None:intergenic |
| GATGGGGAAAGGAGAGAAGG+AGG | 0.489046 | 5_4:-8908867 | None:intergenic |
| GTTGAGGATTGTTATTTCTA+GGG | 0.500027 | 5_4:-8908970 | None:intergenic |
| ATTAAGATTTGGATGGGGAA+AGG | 0.504291 | 5_4:-8908878 | None:intergenic |
| CTCGAAGCGAAACAAGCGCT+TGG | 0.509306 | 5_4:+8909214 | Msa0835520:CDS |
| TATCATCATATATAATAAAA+CGG | 0.517957 | 5_4:-8913011 | None:intergenic |
| GTGCTGGGAAATGTTGATAG+TGG | 0.520234 | 5_4:-8908763 | None:intergenic |
| AAACTAAGTGGATCAAATCA+TGG | 0.520710 | 5_4:-8913285 | None:intergenic |
| AGTTTATGGGTTGATTGGGA+AGG | 0.522441 | 5_4:+8909468 | Msa0835520:CDS |
| GTCTTTGTTCTCTCACACGA+AGG | 0.525988 | 5_4:-8909322 | None:intergenic |
| GCTGTTAATCAAGCTATTCA+CGG | 0.527856 | 5_4:+8913087 | Msa0835520:CDS |
| TAGTGGAAAATAAAATTGGA+GGG | 0.528126 | 5_4:-8908746 | None:intergenic |
| TATGGATAAGATTGTGAGGA+GGG | 0.528274 | 5_4:+8909552 | Msa0835520:CDS |
| AGACGAAGCATGTTAGGTCT+GGG | 0.530011 | 5_4:+8909341 | Msa0835520:CDS |
| CTCTGAATCGATGCATGCCA+GGG | 0.532007 | 5_4:-8910958 | None:intergenic |
| ACACATGCTCTAAACAGCCT+TGG | 0.533681 | 5_4:-8910932 | None:intergenic |
| CTTATGAGCGCAACCGGAGA+CGG | 0.533815 | 5_4:+8913046 | Msa0835520:CDS |
| TTCCAGAAATTACCGAAGCC+AGG | 0.536155 | 5_4:+8911056 | Msa0835520:CDS |
| ATCTTATCCATATTATCATA+CGG | 0.538399 | 5_4:-8909541 | None:intergenic |
| TCGATTCAGAGGAAATATAT+GGG | 0.538733 | 5_4:+8910970 | Msa0835520:CDS |
| ATTGTAGATGAAGGGGTTTG+GGG | 0.542616 | 5_4:-8908673 | None:intergenic |
| ACTCTCTCCCTCATCGGACC+AGG | 0.543075 | 5_4:-8909448 | None:intergenic |
| ATGATGAGGATTGCCAGCCT+AGG | 0.543609 | 5_4:+8910561 | Msa0835520:CDS |
| TTTGAAGATTGAATTGTGCT+GGG | 0.545348 | 5_4:-8908778 | None:intergenic |
| TTGCTCCATGATCTGAGCCA+TGG | 0.546436 | 5_4:-8913439 | None:intergenic |
| AAGTGGATCAAATCATGGTA+AGG | 0.547895 | 5_4:-8913280 | None:intergenic |
| AGCTTGATTAACAGCTGTTG+TGG | 0.551231 | 5_4:-8913079 | None:intergenic |
| TGATGAGGATTGCCAGCCTA+GGG | 0.552339 | 5_4:+8910562 | Msa0835520:CDS |
| TTTAGAATGTAACGTCTTGG+TGG | 0.553258 | 5_4:-8909049 | None:intergenic |
| ATAGTGGAAAATAAAATTGG+AGG | 0.555100 | 5_4:-8908747 | None:intergenic |
| TGAGTAAACAGAGCATCTGC+AGG | 0.557301 | 5_4:-8910908 | None:intergenic |
| ATCGGACCAGGCAATTCCCT+CGG | 0.558254 | 5_4:-8909436 | None:intergenic |
| CCATAAACTCTCTCCCTCAT+CGG | 0.567145 | 5_4:-8909454 | None:intergenic |
| TCTCCGGTTGCGCTCATAAG+CGG | 0.572925 | 5_4:-8913043 | None:intergenic |
| TTCTCTTGCAGCCACAACCC+AGG | 0.573873 | 5_4:-8912928 | None:intergenic |
| ATATGTGCTGGAATTGGCAT+TGG | 0.575967 | 5_4:+8909390 | Msa0835520:CDS |
| GAAGCCAGGAACATAGAGCT+TGG | 0.576371 | 5_4:+8911070 | Msa0835520:CDS |
| ACATGGCAATAGAGTACTCT+CGG | 0.579660 | 5_4:+8913217 | Msa0835520:three_prime_UTR |
| CCTGGCATGCATCGATTCAG+AGG | 0.580371 | 5_4:+8910959 | Msa0835520:CDS |
| ATGCTCTGTTTACTCATCCA+AGG | 0.580822 | 5_4:+8910915 | Msa0835520:CDS |
| GTACTCTACTTGTTAGAACT+GGG | 0.583609 | 5_4:+8913359 | Msa0835520:three_prime_UTR |
| GGAATTGCCTGGTCCGATGA+GGG | 0.585185 | 5_4:+8909441 | Msa0835520:CDS |
| CAATCTTCAAACAACTACAA+TGG | 0.585823 | 5_4:+8908790 | Msa0835520:exon |
| AAATCATGGTAAGGAAAACC+AGG | 0.587516 | 5_4:-8913271 | None:intergenic |
| TGTAGATGAAGGGGTTTGGG+GGG | 0.589369 | 5_4:-8908671 | None:intergenic |
| CGGAATGGATCCAGATGATG+AGG | 0.590285 | 5_4:+8910547 | Msa0835520:CDS |
| GCGCAAACAACTTGAAGATG+TGG | 0.590741 | 5_4:+8910586 | Msa0835520:CDS |
| TGAAGCATTTAGATGCTCCT+GGG | 0.592431 | 5_4:+8912911 | Msa0835520:CDS |
| TCATCCTCTAATGTGTCTGA+TGG | 0.595112 | 5_4:-8909250 | None:intergenic |
| TTGTAGATGAAGGGGTTTGG+GGG | 0.604922 | 5_4:-8908672 | None:intergenic |
| AGGTATCCGAGGGAATTGCC+TGG | 0.610907 | 5_4:+8909430 | Msa0835520:CDS |
| CCAAGTGCTCTCATAACTTG+GGG | 0.611381 | 5_4:-8911007 | None:intergenic |
| CTCACACGAAGGATGCTGAA+AGG | 0.613808 | 5_4:-8909311 | None:intergenic |
| ATATGGATAAGATTGTGAGG+AGG | 0.618424 | 5_4:+8909551 | Msa0835520:CDS |
| GTAACTGCGACAACGTGAAG+AGG | 0.624601 | 5_4:-8908926 | None:intergenic |
| GGGAATTGCCTGGTCCGATG+AGG | 0.628852 | 5_4:+8909440 | Msa0835520:CDS |
| AGTGGAAAATAAAATTGGAG+GGG | 0.636810 | 5_4:-8908745 | None:intergenic |
| GCATTGTTAAGGCGCGACGA+AGG | 0.641980 | 5_4:-8909163 | None:intergenic |
| GTAAACAGAGCATCTGCAGG+AGG | 0.645297 | 5_4:-8910905 | None:intergenic |
| ATAATATGGATAAGATTGTG+AGG | 0.645777 | 5_4:+8909548 | Msa0835520:CDS |
| CTAGCAGCTTTAATCCACTT+AGG | 0.646479 | 5_4:-8909499 | None:intergenic |
| TAACTGCGACAACGTGAAGA+GGG | 0.648251 | 5_4:-8908925 | None:intergenic |
| ATTGTGAGGAGGGATAGAGA+AGG | 0.649063 | 5_4:+8909562 | Msa0835520:CDS |
| AATCTCTCAAAGCAAAATCG+AGG | 0.653019 | 5_4:-8911841 | None:intergenic |
| TCTGAATCGATGCATGCCAG+GGG | 0.656480 | 5_4:-8910957 | None:intergenic |
| AGATAACCGGAACAGAGATG+AGG | 0.667397 | 5_4:+8913388 | Msa0835520:three_prime_UTR |
| AATCATGGTAAGGAAAACCA+GGG | 0.685301 | 5_4:-8913270 | None:intergenic |
| ATCATGGTAAGGAAAACCAG+GGG | 0.708787 | 5_4:-8913269 | None:intergenic |
| CTGAATCGATGCATGCCAGG+GGG | 0.708978 | 5_4:-8910956 | None:intergenic |
| TCATGGTAAGGAAAACCAGG+GGG | 0.756619 | 5_4:-8913268 | None:intergenic |
| AATATGAGACAAGAATGACA+TGG | 0.759010 | 5_4:+8913200 | Msa0835520:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATGTTAATATTTGTAT+TGG | + | chr5_4:8910012-8910031 | Msa0835520:intron | 10.0% |
| !!! | TGTATTAATAGTTTAAAATT+AGG | + | chr5_4:8911580-8911599 | Msa0835520:intron | 10.0% |
| !! | TATCATCATATATAATAAAA+CGG | - | chr5_4:8913014-8913033 | None:intergenic | 10.0% |
| !! | ATTATTTGAAAATTCAATTT+GGG | + | chr5_4:8913493-8913512 | Msa0835520:three_prime_UTR | 10.0% |
| !! | ATTACGTAATTTATTTGATA+GGG | + | chr5_4:8909815-8909834 | Msa0835520:intron | 15.0% |
| !!! | TTTTTATTTTCTTAAGGATT+TGG | + | chr5_4:8912867-8912886 | Msa0835520:intron | 15.0% |
| !! | GATTATTTGAAAATTCAATT+TGG | + | chr5_4:8913492-8913511 | Msa0835520:three_prime_UTR | 15.0% |
| !!! | TTGATAGTGGAAAATAAAAT+TGG | - | chr5_4:8908753-8908772 | None:intergenic | 20.0% |
| !!! | TTTTTGATTAAGATTTGGAT+GGG | - | chr5_4:8908887-8908906 | None:intergenic | 20.0% |
| !! | ATCTTATCCATATTATCATA+CGG | - | chr5_4:8909544-8909563 | None:intergenic | 20.0% |
| !!! | TCAATCAAATTTTACTATGT+AGG | + | chr5_4:8909731-8909750 | Msa0835520:intron | 20.0% |
| !! | CATTACGTAATTTATTTGAT+AGG | + | chr5_4:8909814-8909833 | Msa0835520:intron | 20.0% |
| !! | TGATATTCATTTGCATAATA+TGG | + | chr5_4:8909961-8909980 | Msa0835520:intron | 20.0% |
| !! | TTCACATAATGAATGATATT+TGG | + | chr5_4:8910036-8910055 | Msa0835520:intron | 20.0% |
| !! | GTTATAGTGATATAAACTAT+AGG | + | chr5_4:8910132-8910151 | Msa0835520:intron | 20.0% |
| !! | AAAGAATACAACAGATATAA+AGG | - | chr5_4:8910186-8910205 | None:intergenic | 20.0% |
| !!! | CTGTTGTATTCTTTTTTTTT+TGG | + | chr5_4:8910192-8910211 | Msa0835520:intron | 20.0% |
| !!! | CAAGTTTACTTCTAAAAAAA+GGG | - | chr5_4:8911678-8911697 | None:intergenic | 20.0% |
| !!! | ACAAGTTTACTTCTAAAAAA+AGG | - | chr5_4:8911679-8911698 | None:intergenic | 20.0% |
| !!! | ACAACGTTTTTATTTTCTTA+AGG | + | chr5_4:8912861-8912880 | Msa0835520:intron | 20.0% |
| !! | TAAATAACCTAAAAACTAAG+TGG | - | chr5_4:8913300-8913319 | None:intergenic | 20.0% |
| ! | TAGTGGAAAATAAAATTGGA+GGG | - | chr5_4:8908749-8908768 | None:intergenic | 25.0% |
| !! | ATAGTGGAAAATAAAATTGG+AGG | - | chr5_4:8908750-8908769 | None:intergenic | 25.0% |
| !!! | TTTTGATTAAGATTTGGATG+GGG | - | chr5_4:8908886-8908905 | None:intergenic | 25.0% |
| !!! | GTTTTTGATTAAGATTTGGA+TGG | - | chr5_4:8908888-8908907 | None:intergenic | 25.0% |
| !!! | TGGTGTTTTTGATTAAGATT+TGG | - | chr5_4:8908892-8908911 | None:intergenic | 25.0% |
| ! | GTAGACAAGAACTTAATAAT+GGG | - | chr5_4:8909144-8909163 | None:intergenic | 25.0% |
| ! | ATAATTTATCGGCATTGTTA+AGG | - | chr5_4:8909177-8909196 | None:intergenic | 25.0% |
| ! | TTAACAATGCCGATAAATTA+TGG | + | chr5_4:8909176-8909195 | Msa0835520:CDS | 25.0% |
| ! | CTCATCTATCCATAATTTAT+CGG | - | chr5_4:8909188-8909207 | None:intergenic | 25.0% |
| !! | GTTTGATACTTTGTTGTATT+TGG | + | chr5_4:8909288-8909307 | Msa0835520:CDS | 25.0% |
| !!! | ATTCTAGGTTGTTTTTCTTA+GGG | + | chr5_4:8909365-8909384 | Msa0835520:CDS | 25.0% |
| ! | GATATTTCCGTATGATAATA+TGG | + | chr5_4:8909534-8909553 | Msa0835520:CDS | 25.0% |
| ! | ATAATATGGATAAGATTGTG+AGG | + | chr5_4:8909548-8909567 | Msa0835520:CDS | 25.0% |
| ! | AAAATTAGAACTTACTTGAC+AGG | - | chr5_4:8909589-8909608 | None:intergenic | 25.0% |
| ! | AGTAAAATTTGATTGAACGA+CGG | - | chr5_4:8909727-8909746 | None:intergenic | 25.0% |
| !!! | TGAATTGATTTGTTAGGATA+AGG | + | chr5_4:8909891-8909910 | Msa0835520:intron | 25.0% |
| ! | GTTTATATCACTATAACTCA+TGG | - | chr5_4:8910129-8910148 | None:intergenic | 25.0% |
| ! | CAAATTGATTAACAGCATAT+GGG | - | chr5_4:8910348-8910367 | None:intergenic | 25.0% |
| ! | ACAAATTGATTAACAGCATA+TGG | - | chr5_4:8910349-8910368 | None:intergenic | 25.0% |
| ! | AATATAGAACATTCGATTGT+AGG | - | chr5_4:8910851-8910870 | None:intergenic | 25.0% |
| ! | AAATGTGAAAGTAGAATGAA+AGG | - | chr5_4:8911124-8911143 | None:intergenic | 25.0% |
| ! | TTCTATTTATTATCCTTCTC+AGG | + | chr5_4:8911248-8911267 | Msa0835520:intron | 25.0% |
| ! | AATTACATAAACAGCTAAAC+CGG | - | chr5_4:8911447-8911466 | None:intergenic | 25.0% |
| !!! | TATTCACTTTTCTATTGAAG+TGG | + | chr5_4:8911711-8911730 | Msa0835520:intron | 25.0% |
| !!! | ATTCACTTTTCTATTGAAGT+GGG | + | chr5_4:8911712-8911731 | Msa0835520:intron | 25.0% |
| ! | TTTGAGAGATTAGAATATGT+TGG | + | chr5_4:8911853-8911872 | Msa0835520:CDS | 25.0% |
| ! | GAAGACTCTAATTTCATTAA+TGG | + | chr5_4:8911921-8911940 | Msa0835520:intron | 25.0% |
| ! | TTATCGCATTTCTGATAATA+GGG | - | chr5_4:8911972-8911991 | None:intergenic | 25.0% |
| ! | TTTATCGCATTTCTGATAAT+AGG | - | chr5_4:8911973-8911992 | None:intergenic | 25.0% |
| ! | ATCTTGAATAGAAAAAAGTG+AGG | + | chr5_4:8912016-8912035 | Msa0835520:intron | 25.0% |
| !! | CATTATTCTGAAAAATAGCT+TGG | + | chr5_4:8912081-8912100 | Msa0835520:intron | 25.0% |
| !!! | ATTTTTCACATCTAAGATCA+GGG | - | chr5_4:8912200-8912219 | None:intergenic | 25.0% |
| !!! | AATTTTTCACATCTAAGATC+AGG | - | chr5_4:8912201-8912220 | None:intergenic | 25.0% |
| !!! | TCATGGAAGCTTTTTTTTTT+TGG | - | chr5_4:8912240-8912259 | None:intergenic | 25.0% |
| ! | AATTGTTTGAAAGTTACTGA+AGG | + | chr5_4:8912406-8912425 | Msa0835520:intron | 25.0% |
| !!! | TTCTGAAATATAAACAAGAG+AGG | + | chr5_4:8912495-8912514 | Msa0835520:intron | 25.0% |
| ! | AAAAAAGATGATGCTAACAA+GGG | + | chr5_4:8912597-8912616 | Msa0835520:intron | 25.0% |
| !! | ATTCTTCTGAACAAATTTTG+TGG | + | chr5_4:8912961-8912980 | Msa0835520:CDS | 25.0% |
| !!! | ATTTGATCCACTTAGTTTTT+AGG | + | chr5_4:8913290-8913309 | Msa0835520:three_prime_UTR | 25.0% |
| ! | TTTTGACATTGTAGATGAAG+GGG | - | chr5_4:8908683-8908702 | None:intergenic | 30.0% |
| !! | GTTTTGACATTGTAGATGAA+GGG | - | chr5_4:8908684-8908703 | None:intergenic | 30.0% |
| !! | TGATTTGTGGATTTTTGTAC+TGG | - | chr5_4:8908706-8908725 | None:intergenic | 30.0% |
| !! | AGATTAATGGGATTGATTTG+TGG | - | chr5_4:8908719-8908738 | None:intergenic | 30.0% |
| AGTGGAAAATAAAATTGGAG+GGG | - | chr5_4:8908748-8908767 | None:intergenic | 30.0% | |
| TTTGAAGATTGAATTGTGCT+GGG | - | chr5_4:8908781-8908800 | None:intergenic | 30.0% | |
| CAATCTTCAAACAACTACAA+TGG | + | chr5_4:8908790-8908809 | Msa0835520:exon | 30.0% | |
| !!! | ATGAGAAGTTAGTTGGTTTT+GGG | - | chr5_4:8908841-8908860 | None:intergenic | 30.0% |
| !! | AATGAGAAGTTAGTTGGTTT+TGG | - | chr5_4:8908842-8908861 | None:intergenic | 30.0% |
| !! | GTTGAGGATTGTTATTTCTA+GGG | - | chr5_4:8908973-8908992 | None:intergenic | 30.0% |
| !!! | TTGGTGGTGATTTTGATTTT+GGG | - | chr5_4:8909036-8909055 | None:intergenic | 30.0% |
| !! | AATGATTTTAATGAGAGCTG+TGG | - | chr5_4:8909121-8909140 | None:intergenic | 30.0% |
| GGTAGACAAGAACTTAATAA+TGG | - | chr5_4:8909145-8909164 | None:intergenic | 30.0% | |
| ! | CAACAAAGTATCAAACTGTT+TGG | - | chr5_4:8909284-8909303 | None:intergenic | 30.0% |
| !!! | CATTCTAGGTTGTTTTTCTT+AGG | + | chr5_4:8909364-8909383 | Msa0835520:CDS | 30.0% |
| TGAGAAGAATATAGCTAACT+CGG | - | chr5_4:8909794-8909813 | None:intergenic | 30.0% | |
| TTAGTTAGATATCATGTGAC+CGG | + | chr5_4:8909838-8909857 | Msa0835520:intron | 30.0% | |
| CCTAACAAATCAATTCAGTT+TGG | - | chr5_4:8909888-8909907 | None:intergenic | 30.0% | |
| !! | CCAAACTGAATTGATTTGTT+AGG | + | chr5_4:8909885-8909904 | Msa0835520:intron | 30.0% |
| ! | CATAAACTTAAAAGTGCACA+AGG | - | chr5_4:8910070-8910089 | None:intergenic | 30.0% |
| ! | TTTGTTGCTATCTCATTTTC+AGG | + | chr5_4:8910224-8910243 | Msa0835520:intron | 30.0% |
| ACCATCTTATATGATTGAGT+TGG | + | chr5_4:8910375-8910394 | Msa0835520:intron | 30.0% | |
| ACCAACTCAATCATATAAGA+TGG | - | chr5_4:8910379-8910398 | None:intergenic | 30.0% | |
| !! | CACATTTGTTATTCTATCGT+AGG | + | chr5_4:8910444-8910463 | Msa0835520:intron | 30.0% |
| !! | TTTGTTATTCTATCGTAGGT+CGG | + | chr5_4:8910448-8910467 | Msa0835520:intron | 30.0% |
| AGTTTGAAAACAAGCTAAAC+TGG | + | chr5_4:8910624-8910643 | Msa0835520:CDS | 30.0% | |
| ! | GCAAGATATTGTTGCTTATA+AGG | + | chr5_4:8910646-8910665 | Msa0835520:CDS | 30.0% |
| CAATCGAATGTTCTATATTG+AGG | + | chr5_4:8910852-8910871 | Msa0835520:intron | 30.0% | |
| ! | ATCGATTCAGAGGAAATATA+TGG | + | chr5_4:8910969-8910988 | Msa0835520:CDS | 30.0% |
| TCGATTCAGAGGAAATATAT+GGG | + | chr5_4:8910970-8910989 | Msa0835520:CDS | 30.0% | |
| ! | ATTCTGTCTGTCATTTCTAA+TGG | - | chr5_4:8911037-8911056 | None:intergenic | 30.0% |
| ! | AGATGTTTAGTGATAGTGAT+TGG | + | chr5_4:8911292-8911311 | Msa0835520:intron | 30.0% |
| !! | AAACTTGAAAGTATCACTGT+AGG | - | chr5_4:8911369-8911388 | None:intergenic | 30.0% |
| ! | CAAGTTTTTGTGTTGAATTC+AGG | + | chr5_4:8911382-8911401 | Msa0835520:intron | 30.0% |
| !!! | TTGACAATTCTGTTTTTACC+CGG | + | chr5_4:8911425-8911444 | Msa0835520:intron | 30.0% |
| ATTACATAAACAGCTAAACC+GGG | - | chr5_4:8911446-8911465 | None:intergenic | 30.0% | |
| ! | GTTTATGTAATTTTCTCACC+TGG | + | chr5_4:8911455-8911474 | Msa0835520:intron | 30.0% |
| TGCTCAAATTTGTACTTTGA+TGG | - | chr5_4:8911820-8911839 | None:intergenic | 30.0% | |
| ATATGTTGGAAAAACGATAC+AGG | + | chr5_4:8911867-8911886 | Msa0835520:CDS | 30.0% | |
| ATTTCTGATAATAGGGAAAG+GGG | - | chr5_4:8911965-8911984 | None:intergenic | 30.0% | |
| CATTTCTGATAATAGGGAAA+GGG | - | chr5_4:8911966-8911985 | None:intergenic | 30.0% | |
| GGATAAAAATAGATTGCAAC+AGG | + | chr5_4:8912102-8912121 | Msa0835520:intron | 30.0% | |
| ! | TCTTTCTCTTAGGTTTTTCA+TGG | - | chr5_4:8912257-8912276 | None:intergenic | 30.0% |
| TGAAAAACCTAAGAGAAAGA+TGG | + | chr5_4:8912257-8912276 | Msa0835520:intron | 30.0% | |
| GAAAAACCTAAGAGAAAGAT+GGG | + | chr5_4:8912258-8912277 | Msa0835520:intron | 30.0% | |
| TGAAATATAAACAAGAGAGG+TGG | + | chr5_4:8912498-8912517 | Msa0835520:intron | 30.0% | |
| GAAATATAAACAAGAGAGGT+GGG | + | chr5_4:8912499-8912518 | Msa0835520:intron | 30.0% | |
| CAAAATCACAGACACATATT+AGG | - | chr5_4:8912567-8912586 | None:intergenic | 30.0% | |
| CAAAAAAGATGATGCTAACA+AGG | + | chr5_4:8912596-8912615 | Msa0835520:intron | 30.0% | |
| AAAAAGATGATGCTAACAAG+GGG | + | chr5_4:8912598-8912617 | Msa0835520:intron | 30.0% | |
| ! | TACAAATTTTGTGCTTCCAA+CGG | - | chr5_4:8912714-8912733 | None:intergenic | 30.0% |
| !!! | TTTTCTTAAGGATTTGGTGA+TGG | + | chr5_4:8912873-8912892 | Msa0835520:intron | 30.0% |
| ! | AATTTTGTGGAAGATACTTG+AGG | + | chr5_4:8912974-8912993 | Msa0835520:CDS | 30.0% |
| ! | ATTTTGTGGAAGATACTTGA+GGG | + | chr5_4:8912975-8912994 | Msa0835520:CDS | 30.0% |
| ! | GACTCTCATATCTTGTTTAT+GGG | + | chr5_4:8913109-8913128 | Msa0835520:CDS | 30.0% |
| TCTCATATTTAGACCTCTTT+AGG | - | chr5_4:8913189-8913208 | None:intergenic | 30.0% | |
| AATATGAGACAAGAATGACA+TGG | + | chr5_4:8913200-8913219 | Msa0835520:exon | 30.0% | |
| AAACTAAGTGGATCAAATCA+TGG | - | chr5_4:8913288-8913307 | None:intergenic | 30.0% | |
| !! | GGTTTTGACATTGTAGATGA+AGG | - | chr5_4:8908685-8908704 | None:intergenic | 35.0% |
| GTTTGAAGATTGAATTGTGC+TGG | - | chr5_4:8908782-8908801 | None:intergenic | 35.0% | |
| !!! | TGAGAAGTTAGTTGGTTTTG+GGG | - | chr5_4:8908840-8908859 | None:intergenic | 35.0% |
| GATGAGAATGAGAAGTTAGT+TGG | - | chr5_4:8908848-8908867 | None:intergenic | 35.0% | |
| ATTAAGATTTGGATGGGGAA+AGG | - | chr5_4:8908881-8908900 | None:intergenic | 35.0% | |
| !! | TTCTAGGGAAGTCTTTTGTT+GGG | - | chr5_4:8908958-8908977 | None:intergenic | 35.0% |
| !! | TTTCTAGGGAAGTCTTTTGT+TGG | - | chr5_4:8908959-8908978 | None:intergenic | 35.0% |
| !! | CGTTGAGGATTGTTATTTCT+AGG | - | chr5_4:8908974-8908993 | None:intergenic | 35.0% |
| !! | AGTTCTTTTAGAAGTCGTTG+AGG | - | chr5_4:8908989-8909008 | None:intergenic | 35.0% |
| !!! | CTTGGTGGTGATTTTGATTT+TGG | - | chr5_4:8909037-8909056 | None:intergenic | 35.0% |
| ! | TTTAGAATGTAACGTCTTGG+TGG | - | chr5_4:8909052-8909071 | None:intergenic | 35.0% |
| !!! | GGTTTTAGAATGTAACGTCT+TGG | - | chr5_4:8909055-8909074 | None:intergenic | 35.0% |
| ! | AAAGTATCAAACTGTTTGGC+AGG | - | chr5_4:8909280-8909299 | None:intergenic | 35.0% |
| !! | AGAGAGTTTATGGGTTGATT+GGG | + | chr5_4:8909464-8909483 | Msa0835520:CDS | 35.0% |
| ATATGGATAAGATTGTGAGG+AGG | + | chr5_4:8909551-8909570 | Msa0835520:CDS | 35.0% | |
| TATGGATAAGATTGTGAGGA+GGG | + | chr5_4:8909552-8909571 | Msa0835520:CDS | 35.0% | |
| GACATCAAATGATCATAGAC+CGG | - | chr5_4:8909860-8909879 | None:intergenic | 35.0% | |
| TCTCATGAATTAAGCTTGCA+TGG | + | chr5_4:8909933-8909952 | Msa0835520:intron | 35.0% | |
| ! | GGTTTTCTGTCTATGTCTAT+TGG | + | chr5_4:8909982-8910001 | Msa0835520:intron | 35.0% |
| TTACTGTCTAAACAGGACAT+AGG | + | chr5_4:8910290-8910309 | Msa0835520:intron | 35.0% | |
| CGAACACTTCAAAAAGAACA+CGG | - | chr5_4:8910529-8910548 | None:intergenic | 35.0% | |
| !!! | CGTGTTCTTTTTGAAGTGTT+CGG | + | chr5_4:8910527-8910546 | Msa0835520:CDS | 35.0% |
| !!! | TCTTTTTGAAGTGTTCGGAA+TGG | + | chr5_4:8910532-8910551 | Msa0835520:CDS | 35.0% |
| GTGCAGTTGCTCATAATAAA+TGG | - | chr5_4:8910734-8910753 | None:intergenic | 35.0% | |
| ! | ACTTTCACATTTTCCCTTTC+TGG | + | chr5_4:8911132-8911151 | Msa0835520:intron | 35.0% |
| ! | GTGCTTTAAATAGCCAGAAA+GGG | - | chr5_4:8911148-8911167 | None:intergenic | 35.0% |
| ! | TGTGCTTTAAATAGCCAGAA+AGG | - | chr5_4:8911149-8911168 | None:intergenic | 35.0% |
| ! | GGCTATTTAAAGCACAAATC+TGG | + | chr5_4:8911153-8911172 | Msa0835520:intron | 35.0% |
| ! | TTTAGTGATAGTGATTGGCA+AGG | + | chr5_4:8911297-8911316 | Msa0835520:intron | 35.0% |
| ! | TTAGTGATAGTGATTGGCAA+GGG | + | chr5_4:8911298-8911317 | Msa0835520:intron | 35.0% |
| TGGTTTAGCTGTTTAGCAAT+CGG | + | chr5_4:8911475-8911494 | Msa0835520:intron | 35.0% | |
| AAACTTGTCTAGTGCATATG+CGG | + | chr5_4:8911631-8911650 | Msa0835520:intron | 35.0% | |
| AATCTCTCAAAGCAAAATCG+AGG | - | chr5_4:8911844-8911863 | None:intergenic | 35.0% | |
| TTCGTTTGTGGAAATTCTTC+AGG | + | chr5_4:8911899-8911918 | Msa0835520:intron | 35.0% | |
| GCATTTCTGATAATAGGGAA+AGG | - | chr5_4:8911967-8911986 | None:intergenic | 35.0% | |
| GAATAGAAAAAAGTGAGGTG+AGG | + | chr5_4:8912021-8912040 | Msa0835520:intron | 35.0% | |
| CGGAATTTCCACTTAGATAT+GGG | + | chr5_4:8912293-8912312 | Msa0835520:intron | 35.0% | |
| ! | TTTTCATGCCCATATCTAAG+TGG | - | chr5_4:8912304-8912323 | None:intergenic | 35.0% |
| GAATAGCTGCAGTACAATTA+CGG | + | chr5_4:8912348-8912367 | Msa0835520:intron | 35.0% | |
| AATAGCTGCAGTACAATTAC+GGG | + | chr5_4:8912349-8912368 | Msa0835520:intron | 35.0% | |
| TTTGAAAGTTACTGAAGGTG+AGG | + | chr5_4:8912411-8912430 | Msa0835520:intron | 35.0% | |
| AATAAAACGGTGAAGCTGTT+TGG | - | chr5_4:8913001-8913020 | None:intergenic | 35.0% | |
| GCTGTTAATCAAGCTATTCA+CGG | + | chr5_4:8913087-8913106 | Msa0835520:CDS | 35.0% | |
| ! | GGACTCTCATATCTTGTTTA+TGG | + | chr5_4:8913108-8913127 | Msa0835520:CDS | 35.0% |
| AATCATGGTAAGGAAAACCA+GGG | - | chr5_4:8913273-8913292 | None:intergenic | 35.0% | |
| AAATCATGGTAAGGAAAACC+AGG | - | chr5_4:8913274-8913293 | None:intergenic | 35.0% | |
| AAGTGGATCAAATCATGGTA+AGG | - | chr5_4:8913283-8913302 | None:intergenic | 35.0% | |
| ! | TGTACTCTACTTGTTAGAAC+TGG | + | chr5_4:8913358-8913377 | Msa0835520:three_prime_UTR | 35.0% |
| ! | GTACTCTACTTGTTAGAACT+GGG | + | chr5_4:8913359-8913378 | Msa0835520:three_prime_UTR | 35.0% |
| ATTGTAGATGAAGGGGTTTG+GGG | - | chr5_4:8908676-8908695 | None:intergenic | 40.0% | |
| CATTGTAGATGAAGGGGTTT+GGG | - | chr5_4:8908677-8908696 | None:intergenic | 40.0% | |
| ACATTGTAGATGAAGGGGTT+TGG | - | chr5_4:8908678-8908697 | None:intergenic | 40.0% | |
| GAGGGGTTGTGAAGATTAAT+GGG | - | chr5_4:8908731-8908750 | None:intergenic | 40.0% | |
| !! | TTTTGGGGAGAGTGAAAAAG+AGG | - | chr5_4:8908825-8908844 | None:intergenic | 40.0% |
| !! | TTACATTCTAAAACCCCCAC+TGG | + | chr5_4:8909060-8909079 | Msa0835520:CDS | 40.0% |
| !!! | AGTTTTTTGTCATCCAGTGG+GGG | - | chr5_4:8909076-8909095 | None:intergenic | 40.0% |
| !!! | GAGTTTTTTGTCATCCAGTG+GGG | - | chr5_4:8909077-8909096 | None:intergenic | 40.0% |
| !!! | CGAGTTTTTTGTCATCCAGT+GGG | - | chr5_4:8909078-8909097 | None:intergenic | 40.0% |
| TGAACCATCAGACACATTAG+AGG | + | chr5_4:8909246-8909265 | Msa0835520:CDS | 40.0% | |
| TCATCCTCTAATGTGTCTGA+TGG | - | chr5_4:8909253-8909272 | None:intergenic | 40.0% | |
| GAACAAAGACGAAGCATGTT+AGG | + | chr5_4:8909335-8909354 | Msa0835520:CDS | 40.0% | |
| TTTCTTAGGGCAATATGTGC+TGG | + | chr5_4:8909378-8909397 | Msa0835520:CDS | 40.0% | |
| ATATGTGCTGGAATTGGCAT+TGG | + | chr5_4:8909390-8909409 | Msa0835520:CDS | 40.0% | |
| ! | TGGCTGAATTCTTTTTGCAG+AGG | + | chr5_4:8909410-8909429 | Msa0835520:CDS | 40.0% |
| !! | GAGAGAGTTTATGGGTTGAT+TGG | + | chr5_4:8909463-8909482 | Msa0835520:CDS | 40.0% |
| !! | AGTTTATGGGTTGATTGGGA+AGG | + | chr5_4:8909468-8909487 | Msa0835520:CDS | 40.0% |
| ! | CTAGCAGCTTTAATCCACTT+AGG | - | chr5_4:8909502-8909521 | None:intergenic | 40.0% |
| ! | AGCTAGCTTACTGTCTAAAC+AGG | + | chr5_4:8910283-8910302 | Msa0835520:intron | 40.0% |
| ! | TCTATCGTAGGTCGGTATTT+TGG | + | chr5_4:8910456-8910475 | Msa0835520:intron | 40.0% |
| ! | CTATCGTAGGTCGGTATTTT+GGG | + | chr5_4:8910457-8910476 | Msa0835520:intron | 40.0% |
| !!! | TCGGTATTTTGGGCTTTGTT+TGG | + | chr5_4:8910467-8910486 | Msa0835520:CDS | 40.0% |
| !!! | CGGTATTTTGGGCTTTGTTT+GGG | + | chr5_4:8910468-8910487 | Msa0835520:CDS | 40.0% |
| !!! | GGTATTTTGGGCTTTGTTTG+GGG | + | chr5_4:8910469-8910488 | Msa0835520:CDS | 40.0% |
| !! | GGGGCAATCTATCTTTGTTT+TGG | + | chr5_4:8910488-8910507 | Msa0835520:CDS | 40.0% |
| AAAAGAACACGGTAGACTTC+TGG | - | chr5_4:8910518-8910537 | None:intergenic | 40.0% | |
| ATGCTCTGTTTACTCATCCA+AGG | + | chr5_4:8910915-8910934 | Msa0835520:CDS | 40.0% | |
| TCCAAGTGCTCTCATAACTT+GGG | - | chr5_4:8911011-8911030 | None:intergenic | 40.0% | |
| ATCCAAGTGCTCTCATAACT+TGG | - | chr5_4:8911012-8911031 | None:intergenic | 40.0% | |
| ATTTAACACGAAGCCTGAGA+AGG | - | chr5_4:8911264-8911283 | None:intergenic | 40.0% | |
| GTATCACTGTAGGTGTAACA+AGG | - | chr5_4:8911359-8911378 | None:intergenic | 40.0% | |
| GATTGCTAAACAGCTAAACC+AGG | - | chr5_4:8911476-8911495 | None:intergenic | 40.0% | |
| !! | TGAGTTGAGAGGTTCTAAAG+CGG | - | chr5_4:8911551-8911570 | None:intergenic | 40.0% |
| !! | CACTTAGAACTTGAGTTGAG+AGG | - | chr5_4:8911562-8911581 | None:intergenic | 40.0% |
| AACTTGTCTAGTGCATATGC+GGG | + | chr5_4:8911632-8911651 | Msa0835520:intron | 40.0% | |
| ! | CTTCTAAAAAAAGGGCAACC+CGG | - | chr5_4:8911670-8911689 | None:intergenic | 40.0% |
| ! | AGGTACTGTTCTTTCGTTTG+TGG | + | chr5_4:8911887-8911906 | Msa0835520:intron | 40.0% |
| AAAAAAGTGAGGTGAGGAGA+CGG | + | chr5_4:8912027-8912046 | Msa0835520:intron | 40.0% | |
| AGATCAGGGTCAGGAAATAA+AGG | - | chr5_4:8912186-8912205 | None:intergenic | 40.0% | |
| GCGGAATTTCCACTTAGATA+TGG | + | chr5_4:8912292-8912311 | Msa0835520:intron | 40.0% | |
| TGCATCAAGCCTCAAAAACA+TGG | - | chr5_4:8912528-8912547 | None:intergenic | 40.0% | |
| TATTACTGACGAGACAGAGA+AGG | + | chr5_4:8912757-8912776 | Msa0835520:intron | 40.0% | |
| ATTACTGACGAGACAGAGAA+GGG | + | chr5_4:8912758-8912777 | Msa0835520:intron | 40.0% | |
| ! | ATGAAGCATTTAGATGCTCC+TGG | + | chr5_4:8912910-8912929 | Msa0835520:CDS | 40.0% |
| ! | TGAAGCATTTAGATGCTCCT+GGG | + | chr5_4:8912911-8912930 | Msa0835520:CDS | 40.0% |
| AGCTTGATTAACAGCTGTTG+TGG | - | chr5_4:8913082-8913101 | None:intergenic | 40.0% | |
| ! | ACATGGCAATAGAGTACTCT+CGG | + | chr5_4:8913217-8913236 | Msa0835520:three_prime_UTR | 40.0% |
| CAGGGGGATGGAAAAATAAA+AGG | - | chr5_4:8913255-8913274 | None:intergenic | 40.0% | |
| !!! | CTTTTATTTTTCCATCCCCC+TGG | + | chr5_4:8913253-8913272 | Msa0835520:three_prime_UTR | 40.0% |
| ATCATGGTAAGGAAAACCAG+GGG | - | chr5_4:8913272-8913291 | None:intergenic | 40.0% | |
| ATCTCTGTTCCGGTTATCTA+AGG | - | chr5_4:8913387-8913406 | None:intergenic | 40.0% | |
| ATGTATCCTCATCTCTGTTC+CGG | - | chr5_4:8913397-8913416 | None:intergenic | 40.0% | |
| TTGTAGATGAAGGGGTTTGG+GGG | - | chr5_4:8908675-8908694 | None:intergenic | 45.0% | |
| GGAGGGGTTGTGAAGATTAA+TGG | - | chr5_4:8908732-8908751 | None:intergenic | 45.0% | |
| ! | GTGCTGGGAAATGTTGATAG+TGG | - | chr5_4:8908766-8908785 | None:intergenic | 45.0% |
| AAGAGGGTAGTTTCGGGATT+TGG | - | chr5_4:8908912-8908931 | None:intergenic | 45.0% | |
| AACGTGAAGAGGGTAGTTTC+GGG | - | chr5_4:8908918-8908937 | None:intergenic | 45.0% | |
| CAACGTGAAGAGGGTAGTTT+CGG | - | chr5_4:8908919-8908938 | None:intergenic | 45.0% | |
| TAACTGCGACAACGTGAAGA+GGG | - | chr5_4:8908928-8908947 | None:intergenic | 45.0% | |
| !!! | GCGAGTTTTTTGTCATCCAG+TGG | - | chr5_4:8909079-8909098 | None:intergenic | 45.0% |
| GTCTTTGTTCTCTCACACGA+AGG | - | chr5_4:8909325-8909344 | None:intergenic | 45.0% | |
| AAGACGAAGCATGTTAGGTC+TGG | + | chr5_4:8909340-8909359 | Msa0835520:CDS | 45.0% | |
| AGACGAAGCATGTTAGGTCT+GGG | + | chr5_4:8909341-8909360 | Msa0835520:CDS | 45.0% | |
| ATGTTAGGTCTGGGCATTCT+AGG | + | chr5_4:8909350-8909369 | Msa0835520:CDS | 45.0% | |
| AGGGCAATATGTGCTGGAAT+TGG | + | chr5_4:8909384-8909403 | Msa0835520:CDS | 45.0% | |
| !!! | TCTTTTTGCAGAGGTATCCG+AGG | + | chr5_4:8909419-8909438 | Msa0835520:CDS | 45.0% |
| !!! | CTTTTTGCAGAGGTATCCGA+GGG | + | chr5_4:8909420-8909439 | Msa0835520:CDS | 45.0% |
| CCATAAACTCTCTCCCTCAT+CGG | - | chr5_4:8909457-8909476 | None:intergenic | 45.0% | |
| CGATGAGGGAGAGAGTTTAT+GGG | + | chr5_4:8909455-8909474 | Msa0835520:CDS | 45.0% | |
| GGAAGGAGAATTTGCCTAAG+TGG | + | chr5_4:8909485-8909504 | Msa0835520:CDS | 45.0% | |
| ATTGTGAGGAGGGATAGAGA+AGG | + | chr5_4:8909562-8909581 | Msa0835520:CDS | 45.0% | |
| GCGCAAACAACTTGAAGATG+TGG | + | chr5_4:8910586-8910605 | Msa0835520:CDS | 45.0% | |
| ! | TGAGTAAACAGAGCATCTGC+AGG | - | chr5_4:8910911-8910930 | None:intergenic | 45.0% |
| ! | ACACATGCTCTAAACAGCCT+TGG | - | chr5_4:8910935-8910954 | None:intergenic | 45.0% |
| CCAAGTGCTCTCATAACTTG+GGG | - | chr5_4:8911010-8911029 | None:intergenic | 45.0% | |
| TTCCAGAAATTACCGAAGCC+AGG | + | chr5_4:8911056-8911075 | Msa0835520:CDS | 45.0% | |
| TTCCTGGCTTCGGTAATTTC+TGG | - | chr5_4:8911061-8911080 | None:intergenic | 45.0% | |
| AAGCTCTATGTTCCTGGCTT+CGG | - | chr5_4:8911071-8911090 | None:intergenic | 45.0% | |
| AAGTCCAAGCTCTATGTTCC+TGG | - | chr5_4:8911077-8911096 | None:intergenic | 45.0% | |
| AGGAACATAGAGCTTGGACT+TGG | + | chr5_4:8911076-8911095 | Msa0835520:CDS | 45.0% | |
| TCATGTAGTGAACTGCGCAA+AGG | - | chr5_4:8911518-8911537 | None:intergenic | 45.0% | |
| GCAGAAAACAAAGCTGCAAG+TGG | - | chr5_4:8911795-8911814 | None:intergenic | 45.0% | |
| AAAAAGTGAGGTGAGGAGAC+GGG | + | chr5_4:8912028-8912047 | Msa0835520:intron | 45.0% | |
| ! | TCACATCTAAGATCAGGGTC+AGG | - | chr5_4:8912195-8912214 | None:intergenic | 45.0% |
| AACCTAAGAGAAAGATGGGC+AGG | + | chr5_4:8912262-8912281 | Msa0835520:intron | 45.0% | |
| ACCTAAGAGAAAGATGGGCA+GGG | + | chr5_4:8912263-8912282 | Msa0835520:intron | 45.0% | |
| AAGATGGGCAGGGAATTATG+CGG | + | chr5_4:8912273-8912292 | Msa0835520:intron | 45.0% | |
| CTGCAGTACAATTACGGGAA+GGG | + | chr5_4:8912354-8912373 | Msa0835520:intron | 45.0% | |
| CAATTACGGGAAGGGATGTT+TGG | + | chr5_4:8912362-8912381 | Msa0835520:intron | 45.0% | |
| ! | TGGTTTGAGACTTTGAGCAG+TGG | + | chr5_4:8912444-8912463 | Msa0835520:intron | 45.0% |
| ! | ATGATGCTAACAAGGGGCAT+CGG | + | chr5_4:8912604-8912623 | Msa0835520:intron | 45.0% |
| ATTTAGATGCTCCTGGGTTG+TGG | + | chr5_4:8912917-8912936 | Msa0835520:CDS | 45.0% | |
| GATTAACAGCTGTTGTGGCT+GGG | - | chr5_4:8913077-8913096 | None:intergenic | 45.0% | |
| TGATTAACAGCTGTTGTGGC+TGG | - | chr5_4:8913078-8913097 | None:intergenic | 45.0% | |
| TGAGCAGATTCAGCCTAAAG+AGG | + | chr5_4:8913173-8913192 | Msa0835520:CDS | 45.0% | |
| TCATGGTAAGGAAAACCAGG+GGG | - | chr5_4:8913271-8913290 | None:intergenic | 45.0% | |
| AACTGGGCTCCTTAGATAAC+CGG | + | chr5_4:8913375-8913394 | Msa0835520:three_prime_UTR | 45.0% | |
| AGATAACCGGAACAGAGATG+AGG | + | chr5_4:8913388-8913407 | Msa0835520:three_prime_UTR | 45.0% | |
| ACTGCTTGTTCTACTCTCCA+TGG | + | chr5_4:8913422-8913441 | Msa0835520:three_prime_UTR | 45.0% | |
| !!! | TTATAATTTTTATATTATGT+TGG | + | chr5_4:8909628-8909647 | Msa0835520:intron | 5.0% |
| !!! | GTGTTGCTGGGTTTTGGACA+GGG | - | chr5_4:8908648-8908667 | None:intergenic | 50.0% |
| !!! | TGTGTTGCTGGGTTTTGGAC+AGG | - | chr5_4:8908649-8908668 | None:intergenic | 50.0% |
| !! | GGGTTTGTGTTGCTGGGTTT+TGG | - | chr5_4:8908654-8908673 | None:intergenic | 50.0% |
| ! | TTTGGGGGGTTTGTGTTGCT+GGG | - | chr5_4:8908660-8908679 | None:intergenic | 50.0% |
| TGTAGATGAAGGGGTTTGGG+GGG | - | chr5_4:8908674-8908693 | None:intergenic | 50.0% | |
| TTGGATGGGGAAAGGAGAGA+AGG | - | chr5_4:8908873-8908892 | None:intergenic | 50.0% | |
| GTAACTGCGACAACGTGAAG+AGG | - | chr5_4:8908929-8908948 | None:intergenic | 50.0% | |
| CTCACACGAAGGATGCTGAA+AGG | - | chr5_4:8909314-8909333 | None:intergenic | 50.0% | |
| CCGATGAGGGAGAGAGTTTA+TGG | + | chr5_4:8909454-8909473 | Msa0835520:CDS | 50.0% | |
| CGGAATGGATCCAGATGATG+AGG | + | chr5_4:8910547-8910566 | Msa0835520:CDS | 50.0% | |
| ATGATGAGGATTGCCAGCCT+AGG | + | chr5_4:8910561-8910580 | Msa0835520:CDS | 50.0% | |
| TGATGAGGATTGCCAGCCTA+GGG | + | chr5_4:8910562-8910581 | Msa0835520:CDS | 50.0% | |
| ! | TCAAGTTGTTTGCGCTCCCT+AGG | - | chr5_4:8910581-8910600 | None:intergenic | 50.0% |
| ! | GTAAACAGAGCATCTGCAGG+AGG | - | chr5_4:8910908-8910927 | None:intergenic | 50.0% |
| ! | TTTAGAGCATGTGTTCCCCC+TGG | + | chr5_4:8910941-8910960 | Msa0835520:CDS | 50.0% |
| TCTGAATCGATGCATGCCAG+GGG | - | chr5_4:8910960-8910979 | None:intergenic | 50.0% | |
| CTCTGAATCGATGCATGCCA+GGG | - | chr5_4:8910961-8910980 | None:intergenic | 50.0% | |
| !! | CCCCAAGTTATGAGAGCACT+TGG | + | chr5_4:8911007-8911026 | Msa0835520:CDS | 50.0% |
| GAAGCCAGGAACATAGAGCT+TGG | + | chr5_4:8911070-8911089 | Msa0835520:CDS | 50.0% | |
| AGAGCTTGGACTTGGATTGC+AGG | + | chr5_4:8911084-8911103 | Msa0835520:CDS | 50.0% | |
| TGGCCTCTCTTGCTAGAGTA+CGG | + | chr5_4:8911173-8911192 | Msa0835520:intron | 50.0% | |
| AAAAGTGAGGTGAGGAGACG+GGG | + | chr5_4:8912029-8912048 | Msa0835520:intron | 50.0% | |
| TCCCTGCCCATCTTTCTCTT+AGG | - | chr5_4:8912267-8912286 | None:intergenic | 50.0% | |
| GCTGCAGTACAATTACGGGA+AGG | + | chr5_4:8912353-8912372 | Msa0835520:intron | 50.0% | |
| GTTACTGAAGGTGAGGCTTG+AGG | + | chr5_4:8912418-8912437 | Msa0835520:intron | 50.0% | |
| GAAGGTGAGGCTTGAGGTAT+TGG | + | chr5_4:8912424-8912443 | Msa0835520:intron | 50.0% | |
| !! | GGTGGGTGACCATGTTTTTG+AGG | + | chr5_4:8912516-8912535 | Msa0835520:intron | 50.0% |
| !! | TGATGCTAACAAGGGGCATC+GGG | + | chr5_4:8912605-8912624 | Msa0835520:intron | 50.0% |
| AAACCGCTTATGAGCGCAAC+CGG | + | chr5_4:8913040-8913059 | Msa0835520:CDS | 50.0% | |
| ACTCTCCATGGCTCAGATCA+TGG | + | chr5_4:8913434-8913453 | Msa0835520:three_prime_UTR | 50.0% | |
| TTGCTCCATGATCTGAGCCA+TGG | - | chr5_4:8913442-8913461 | None:intergenic | 50.0% | |
| !!! | TGCTGGGTTTTGGACAGGGT+TGG | - | chr5_4:8908644-8908663 | None:intergenic | 55.0% |
| GTTTGGGGGGTTTGTGTTGC+TGG | - | chr5_4:8908661-8908680 | None:intergenic | 55.0% | |
| GATGGGGAAAGGAGAGAAGG+AGG | - | chr5_4:8908870-8908889 | None:intergenic | 55.0% | |
| GCATTGTTAAGGCGCGACGA+AGG | - | chr5_4:8909166-8909185 | None:intergenic | 55.0% | |
| CTCGAAGCGAAACAAGCGCT+TGG | + | chr5_4:8909214-8909233 | Msa0835520:CDS | 55.0% | |
| AGGTATCCGAGGGAATTGCC+TGG | + | chr5_4:8909430-8909449 | Msa0835520:CDS | 55.0% | |
| ATCGGACCAGGCAATTCCCT+CGG | - | chr5_4:8909439-8909458 | None:intergenic | 55.0% | |
| GGAATTGCCTGGTCCGATGA+GGG | + | chr5_4:8909441-8909460 | Msa0835520:CDS | 55.0% | |
| GGCTGGCAATCCTCATCATC+TGG | - | chr5_4:8910560-8910579 | None:intergenic | 55.0% | |
| CTGAATCGATGCATGCCAGG+GGG | - | chr5_4:8910959-8910978 | None:intergenic | 55.0% | |
| CCTCTGAATCGATGCATGCC+AGG | - | chr5_4:8910962-8910981 | None:intergenic | 55.0% | |
| !! | CCTGGCATGCATCGATTCAG+AGG | + | chr5_4:8910959-8910978 | Msa0835520:CDS | 55.0% |
| CAGCCGTACTCTAGCAAGAG+AGG | - | chr5_4:8911179-8911198 | None:intergenic | 55.0% | |
| CTTGATGCAGAGCGAGACAC+AGG | + | chr5_4:8912539-8912558 | Msa0835520:intron | 55.0% | |
| GTTTCGCCTTCCAGAAGCTC+GGG | - | chr5_4:8912681-8912700 | None:intergenic | 55.0% | |
| GGTTTCGCCTTCCAGAAGCT+CGG | - | chr5_4:8912682-8912701 | None:intergenic | 55.0% | |
| CGAAACCTTATGCGAGCCGT+TGG | + | chr5_4:8912695-8912714 | Msa0835520:intron | 55.0% | |
| TGCTTCCAACGGCTCGCATA+AGG | - | chr5_4:8912703-8912722 | None:intergenic | 55.0% | |
| TTCTCTTGCAGCCACAACCC+AGG | - | chr5_4:8912931-8912950 | None:intergenic | 55.0% | |
| TCTCCGGTTGCGCTCATAAG+CGG | - | chr5_4:8913046-8913065 | None:intergenic | 55.0% | |
| CTTATGAGCGCAACCGGAGA+CGG | + | chr5_4:8913046-8913065 | Msa0835520:CDS | 55.0% | |
| GGTAAGGAAAACCAGGGGGA+TGG | - | chr5_4:8913267-8913286 | None:intergenic | 55.0% | |
| GGGAATTGCCTGGTCCGATG+AGG | + | chr5_4:8909440-8909459 | Msa0835520:CDS | 60.0% | |
| ACTCTCTCCCTCATCGGACC+AGG | - | chr5_4:8909451-8909470 | None:intergenic | 60.0% | |
| GTTGTTTGCGCTCCCTAGGC+TGG | - | chr5_4:8910577-8910596 | None:intergenic | 60.0% | |
| ! | ATGCGGGAGCTCTAGTGCAC+CGG | + | chr5_4:8911648-8911667 | Msa0835520:intron | 60.0% |
| ! | GGCATCGGGACAGATGCTGA+GGG | + | chr5_4:8912619-8912638 | Msa0835520:intron | 60.0% |
| GCATCGGGACAGATGCTGAG+GGG | + | chr5_4:8912620-8912639 | Msa0835520:intron | 60.0% | |
| CATCGGGACAGATGCTGAGG+GGG | + | chr5_4:8912621-8912640 | Msa0835520:intron | 60.0% | |
| CTGAGTGTCTCCCGAGCTTC+TGG | + | chr5_4:8912668-8912687 | Msa0835520:intron | 60.0% | |
| GTGTCTCCCGAGCTTCTGGA+AGG | + | chr5_4:8912672-8912691 | Msa0835520:intron | 60.0% | |
| TGGCTGGGTTTCTCCGTCTC+CGG | - | chr5_4:8913062-8913081 | None:intergenic | 60.0% | |
| ! | TGCGGGAGCTCTAGTGCACC+GGG | + | chr5_4:8911649-8911668 | Msa0835520:intron | 65.0% |
| TGAGGTGAGGAGACGGGGAC+TGG | + | chr5_4:8912034-8912053 | Msa0835520:intron | 65.0% | |
| GAGGTGAGGAGACGGGGACT+GGG | + | chr5_4:8912035-8912054 | Msa0835520:intron | 65.0% | |
| GAGACGGGGACTGGGACTCA+TGG | + | chr5_4:8912043-8912062 | Msa0835520:intron | 65.0% | |
| !! | GGGCATCGGGACAGATGCTG+AGG | + | chr5_4:8912618-8912637 | Msa0835520:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 8908639 | 8913551 | 8908639 | ID=Msa0835520;Name=Msa0835520 |
| chr5_4 | mRNA | 8908639 | 8913551 | 8908639 | ID=Msa0835520-mRNA-1;Parent=Msa0835520;Name=Msa0835520-mRNA-1;_AED=0.05;_eAED=0.05;_QI=170|0.75|0.8|1|1|1|5|351|539 |
| chr5_4 | exon | 8908639 | 8909593 | 8908639 | ID=Msa0835520-mRNA-1:exon:3901;Parent=Msa0835520-mRNA-1 |
| chr5_4 | exon | 8910466 | 8910694 | 8910466 | ID=Msa0835520-mRNA-1:exon:3902;Parent=Msa0835520-mRNA-1 |
| chr5_4 | exon | 8910905 | 8911105 | 8910905 | ID=Msa0835520-mRNA-1:exon:3903;Parent=Msa0835520-mRNA-1 |
| chr5_4 | exon | 8911802 | 8911888 | 8911802 | ID=Msa0835520-mRNA-1:exon:3904;Parent=Msa0835520-mRNA-1 |
| chr5_4 | exon | 8912883 | 8913551 | 8912883 | ID=Msa0835520-mRNA-1:exon:3905;Parent=Msa0835520-mRNA-1 |
| chr5_4 | five_prime_UTR | 8908639 | 8908808 | 8908639 | ID=Msa0835520-mRNA-1:five_prime_utr;Parent=Msa0835520-mRNA-1 |
| chr5_4 | CDS | 8908809 | 8909593 | 8908809 | ID=Msa0835520-mRNA-1:cds;Parent=Msa0835520-mRNA-1 |
| chr5_4 | CDS | 8910466 | 8910694 | 8910466 | ID=Msa0835520-mRNA-1:cds;Parent=Msa0835520-mRNA-1 |
| chr5_4 | CDS | 8910905 | 8911105 | 8910905 | ID=Msa0835520-mRNA-1:cds;Parent=Msa0835520-mRNA-1 |
| chr5_4 | CDS | 8911802 | 8911888 | 8911802 | ID=Msa0835520-mRNA-1:cds;Parent=Msa0835520-mRNA-1 |
| chr5_4 | CDS | 8912883 | 8913200 | 8912883 | ID=Msa0835520-mRNA-1:cds;Parent=Msa0835520-mRNA-1 |
| chr5_4 | three_prime_UTR | 8913201 | 8913551 | 8913201 | ID=Msa0835520-mRNA-1:three_prime_utr;Parent=Msa0835520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
