AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1235150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1235150 MtrunA17_Chr8g0336951 94.624 465 25 0 1 465 1 465 0.0 910
Msa1235150 MtrunA17_Chr2g0297041 37.113 485 266 14 1 464 1 467 2.45e-80 256
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1235150 AT2G44640.1 52.954 474 191 8 1 465 1 451 5.11e-156 450
Msa1235150 AT3G06960.1 35.425 494 273 13 1 464 1 478 5.56e-78 251
Msa1235150 AT3G06960.2 38.158 304 176 6 1 294 1 302 1.13e-54 186

Find 131 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCCTGTGCTTCCTGGATT+TGG 0.253326 8_2:-12922989 Msa1235150:CDS
CAGGTAGCTCCTGTGCTTCC+TGG 0.270782 8_2:-12922995 Msa1235150:CDS
TTGCTTGGTATTCACCAAAA+AGG 0.275530 8_2:-12921869 Msa1235150:CDS
CGAGTCTATATCAGTTGATT+TGG 0.278646 8_2:-12924437 Msa1235150:CDS
CAGCCATTGATTCATCATTC+TGG 0.279261 8_2:-12926965 Msa1235150:CDS
CAAAGAATCAATCGAAATTC+TGG 0.282288 8_2:+12921986 None:intergenic
CCTTCAACATCTGTGTTGTT+TGG 0.283212 8_2:-12924887 Msa1235150:CDS
GGAAGATTCACAAAGAAGTT+TGG 0.289114 8_2:-12922855 Msa1235150:CDS
CTAGATATATCTTCAGCTTC+TGG 0.292099 8_2:-12922807 Msa1235150:CDS
GAAGATTCACAAAGAAGTTT+GGG 0.296464 8_2:-12922854 Msa1235150:CDS
GTACCTCATGCAGCAGTATC+TGG 0.307606 8_2:-12924190 Msa1235150:CDS
GACTCCACATCGCTAGCTTT+AGG 0.309022 8_2:+12921903 None:intergenic
ATCTGTGTTGTTTGGTTTAG+AGG 0.310418 8_2:-12924879 Msa1235150:CDS
TCCACATTACCACGGACTTA+TGG 0.315616 8_2:-12924212 Msa1235150:CDS
ACTCCACATCGCTAGCTTTA+GGG 0.317436 8_2:+12921904 None:intergenic
GGCATCCCTTGTGGCTCGTC+GGG 0.317553 8_2:-12924416 Msa1235150:CDS
GCAGCAGTATCTGGAATTAT+TGG 0.335779 8_2:-12924181 Msa1235150:intron
TTTCTTCTCTTTGACACAGC+TGG 0.345108 8_2:+12922933 None:intergenic
AAAGGAACCATACTCCTTCT+TGG 0.350882 8_2:+12926773 None:intergenic
TTGACCACAAAGGAAGATAC+TGG 0.352098 8_2:-12924468 Msa1235150:CDS
CGGGGATTGCGATACCGCTT+TGG 0.356101 8_2:-12924397 Msa1235150:CDS
ATTGAAAATTTAATTGCAAC+AGG 0.372612 8_2:-12921575 Msa1235150:three_prime_UTR
CGGGAAGAACCTTATTGATT+CGG 0.383096 8_2:-12922964 Msa1235150:CDS
TATAGGTGGCTTGCAGCAAC+TGG 0.383507 8_2:-12925061 Msa1235150:intron
GATCCTCTCCCGAATCAATA+AGG 0.384097 8_2:+12922955 None:intergenic
GGGGATTGCGATACCGCTTT+GGG 0.386728 8_2:-12924396 Msa1235150:CDS
GGTTGGGCCAAGTTTGTTCC+TGG 0.387086 8_2:-12926909 Msa1235150:CDS
TAACTTAATCTTTCAACAAC+AGG 0.387771 8_2:-12922706 Msa1235150:intron
CCTTCTCCCAAGAAGGAGTA+TGG 0.388810 8_2:-12926780 Msa1235150:CDS
ACTGAAGCGTCAAGAGGAAT+AGG 0.389532 8_2:+12926882 None:intergenic
TTTCGATTGATTCTTTGAAC+AGG 0.390812 8_2:-12921980 Msa1235150:CDS
GGGAAGAACCTTATTGATTC+GGG 0.392979 8_2:-12922963 Msa1235150:CDS
AATGTCTAATTGTAGGTTGC+AGG 0.396953 8_2:-12922032 Msa1235150:intron
GTGCTTCCTGGATTTGGAAC+GGG 0.399166 8_2:-12922983 Msa1235150:CDS
ACTTAAGAGTTATGTTTAGT+TGG 0.406432 8_2:-12921678 Msa1235150:three_prime_UTR
AAAGCTAGCGATGTGGAGTC+TGG 0.420043 8_2:-12921900 Msa1235150:CDS
AGCCATTGATTCATCATTCT+GGG 0.424530 8_2:-12926964 Msa1235150:CDS
TCCACAAAACCTCGATGGTT+GGG 0.430228 8_2:-12926925 Msa1235150:CDS
CAACTGGACAATTCCGTCCT+AGG 0.440660 8_2:-12925045 Msa1235150:CDS
GGAAAATGATGAGTGATATG+AGG 0.441130 8_2:+12926828 None:intergenic
TCACTTCTCCTTGATTTCAC+TGG 0.444371 8_2:-12926741 Msa1235150:CDS
GAATCTGCTCGAAATACAAC+TGG 0.446191 8_2:+12922008 None:intergenic
ATTCAATCTCTCCACAGTTA+AGG 0.455924 8_2:-12924978 Msa1235150:CDS
AGAAGTTTGGGGACTTAACC+CGG 0.462716 8_2:-12922842 Msa1235150:CDS
GTTCTTCCCGTTCCAAATCC+AGG 0.462945 8_2:+12922977 None:intergenic
CTTGCGAAGAAAATTCTGAA+TGG 0.465801 8_2:-12922783 Msa1235150:CDS
CATCCCAGTATCTTCCTTTG+TGG 0.468934 8_2:+12924464 None:intergenic
GCTGCAAATGAAATCTTCAA+TGG 0.468982 8_2:+12921944 None:intergenic
TGGCATCCCTTGTGGCTCGT+CGG 0.472617 8_2:-12924417 Msa1235150:CDS
GAGAAGTGACTGAAATGAAA+AGG 0.473027 8_2:+12926755 None:intergenic
GTTGAAAGATTAAGTTAAGC+CGG 0.476484 8_2:+12922712 None:intergenic
AAGGAACCATACTCCTTCTT+GGG 0.477484 8_2:+12926774 None:intergenic
CTCCACAAAACCTCGATGGT+TGG 0.478725 8_2:-12926926 Msa1235150:CDS
GTCCCAGAATGATGAATCAA+TGG 0.487363 8_2:+12926962 None:intergenic
CTCAGCTCCTTCTCCCAAGA+AGG 0.491627 8_2:-12926787 Msa1235150:CDS
CCAAACAACACAGATGTTGA+AGG 0.492018 8_2:+12924887 None:intergenic
ACACCGCTGTCTCTACTGCC+AGG 0.495012 8_2:-12924322 Msa1235150:CDS
ATCGTAAGTAACAGCCGCCT+TGG 0.496861 8_2:+12924291 None:intergenic
AACGATGACCAGTGAAATCA+AGG 0.503727 8_2:+12926733 None:intergenic
GAAAATGATGAGTGATATGA+GGG 0.506868 8_2:+12926829 None:intergenic
CACAACATCATCATCATCAA+TGG 0.511600 8_2:-12927000 Msa1235150:exon
CTGAAGCGTCAAGAGGAATA+GGG 0.513543 8_2:+12926883 None:intergenic
GATTCTTTGAACAGGAAACA+TGG 0.515337 8_2:-12921972 Msa1235150:CDS
TCTGTGTTGTTTGGTTTAGA+GGG 0.522771 8_2:-12924878 Msa1235150:CDS
TGAAGTGAAGTGAAGTGAAG+AGG 0.526440 8_2:+12927057 None:intergenic
TTGAAAGATTAAGTTAAGCC+GGG 0.527812 8_2:+12922713 None:intergenic
TGTGCTTCCTGGATTTGGAA+CGG 0.527834 8_2:-12922984 Msa1235150:CDS
TGATATGAGGGAGTTGTTGA+TGG 0.527979 8_2:+12926841 None:intergenic
TAAGAACAACGGTAGTCCTC+AGG 0.529738 8_2:-12924368 Msa1235150:CDS
ACGATAAGATCAAGTACCTC+TGG 0.530068 8_2:-12924273 Msa1235150:CDS
TTGGGAGAAGGAGCTGAGGA+AGG 0.531214 8_2:+12926792 None:intergenic
ATTCTAAAATGAACGATGCA+TGG 0.531505 8_2:+12921734 None:intergenic
TATCTAGACGAGCATCTACC+CGG 0.531804 8_2:+12922823 None:intergenic
GCCGCCTTGGCACATAACCC+TGG 0.538068 8_2:+12924304 None:intergenic
AGTTGATTTGGCATCCCTTG+TGG 0.540341 8_2:-12924425 Msa1235150:CDS
CCATACTCCTTCTTGGGAGA+AGG 0.543963 8_2:+12926780 None:intergenic
AGGGTCACCAGGAACAAACT+TGG 0.547546 8_2:+12926902 None:intergenic
TTGATTTCACTGGTCATCGT+TGG 0.548954 8_2:-12926731 Msa1235150:intron
ACCATAAGTCCGTGGTAATG+TGG 0.556100 8_2:+12924211 None:intergenic
CAAATCAACTGATATAGACT+CGG 0.556932 8_2:+12924438 None:intergenic
GAACCTTATTGATTCGGGAG+AGG 0.559230 8_2:-12922958 Msa1235150:CDS
GATTAAGTTAAGCCGGGGTG+AGG 0.564997 8_2:+12922719 None:intergenic
ATTCTTTGAACAGGAAACAT+GGG 0.573586 8_2:-12921971 Msa1235150:CDS
GTTCCAAATCCAGGAAGCAC+AGG 0.585341 8_2:+12922986 None:intergenic
TGATGATGATGATGTTGTGC+GGG 0.585517 8_2:+12927004 None:intergenic
TTGTTTGGTTTAGAGGGCCA+TGG 0.586865 8_2:-12924872 Msa1235150:CDS
CATCATCATCATCAATGGCT+AGG 0.589680 8_2:-12926995 Msa1235150:exon
TCAAGAGGAATAGGGTCACC+AGG 0.593510 8_2:+12926891 None:intergenic
ATCTTACAGTGGAGGCAGCA+TGG 0.600522 8_2:-12924504 Msa1235150:CDS
TCCTCTCCACAAAACCTCGA+TGG 0.603168 8_2:-12926930 Msa1235150:CDS
ACTGCCAGGGTTATGTGCCA+AGG 0.607980 8_2:-12924308 Msa1235150:CDS
CTTTGCAACGTCCTTAACTG+TGG 0.610680 8_2:+12924967 None:intergenic
TGGGAGAAGGAGCTGAGGAA+GGG 0.611872 8_2:+12926793 None:intergenic
GCATCCCTTGTGGCTCGTCG+GGG 0.614398 8_2:-12924415 Msa1235150:CDS
CACCGCTGTCTCTACTGCCA+GGG 0.614848 8_2:-12924321 Msa1235150:CDS
CTGGAGAAACACGGAGACTG+AGG 0.616034 8_2:-12924254 Msa1235150:CDS
CAGTCTCCGTGTTTCTCCAG+AGG 0.618270 8_2:+12924257 None:intergenic
CTGGAAACTGAAGCGTCAAG+AGG 0.619867 8_2:+12926876 None:intergenic
TTAAGCCGGGGTGAGGCTGA+CGG 0.619931 8_2:+12922726 None:intergenic
GCAATCCCCGACGAGCCACA+AGG 0.623218 8_2:+12924410 None:intergenic
GAAGTTTGGGGACTTAACCC+GGG 0.623442 8_2:-12922841 Msa1235150:CDS
GAGGAAGGGATAATGCCAAA+GGG 0.625924 8_2:+12926807 None:intergenic
TGATCACGATCTTACAGTGG+AGG 0.626341 8_2:-12924512 Msa1235150:CDS
TGAGGAAGGGATAATGCCAA+AGG 0.630223 8_2:+12926806 None:intergenic
CAATCCCCGACGAGCCACAA+GGG 0.631020 8_2:+12924411 None:intergenic
TTGATGGCGATAGAGTCTGC+TGG 0.631814 8_2:+12926857 None:intergenic
GCCAGGGTTATGTGCCAAGG+CGG 0.636658 8_2:-12924305 Msa1235150:CDS
CTTCTTGGGAGAAGGAGCTG+AGG 0.640737 8_2:+12926788 None:intergenic
GGCTTGTTTCCACATTACCA+CGG 0.643480 8_2:-12924220 Msa1235150:CDS
AACAACCGTCAGCCTCACCC+CGG 0.648424 8_2:-12922731 Msa1235150:CDS
AAGATTCACAAAGAAGTTTG+GGG 0.651005 8_2:-12922853 Msa1235150:CDS
ATTCCAGATACTGCTGCATG+AGG 0.653346 8_2:+12924187 None:intergenic
TTCTGATCACGATCTTACAG+TGG 0.653407 8_2:-12924515 Msa1235150:CDS
ATCTAGACGAGCATCTACCC+GGG 0.654861 8_2:+12922824 None:intergenic
GAGAAACACGGAGACTGAGG+AGG 0.661282 8_2:-12924251 Msa1235150:CDS
CAAGTACCTCTGGAGAAACA+CGG 0.661736 8_2:-12924263 Msa1235150:CDS
AAATCAACTGATATAGACTC+GGG 0.662894 8_2:+12924439 None:intergenic
CAGTTGTTTGTTGACCACAA+AGG 0.665261 8_2:-12924478 Msa1235150:CDS
TGACCACAAAGGAAGATACT+GGG 0.665611 8_2:-12924467 Msa1235150:CDS
TGAAAGATTAAGTTAAGCCG+GGG 0.665959 8_2:+12922714 None:intergenic
TCAGTTGCATTAGTAGCCTG+AGG 0.666364 8_2:+12924352 None:intergenic
TGTTCTTATGCATCCCAAAG+CGG 0.671112 8_2:+12924383 None:intergenic
TGACCCTAAAGCTAGCGATG+TGG 0.680404 8_2:-12921907 Msa1235150:CDS
TTGATGATGATGATGTTGTG+CGG 0.685767 8_2:+12927003 None:intergenic
AACCCTGGCAGTAGAGACAG+CGG 0.710115 8_2:+12924319 None:intergenic
CATGAGGTACCATAAGTCCG+TGG 0.716130 8_2:+12924203 None:intergenic
TTTGGGATGCATAAGAACAA+CGG 0.717493 8_2:-12924379 Msa1235150:CDS
GAGACTGAGGAGGAATACGA+AGG 0.720894 8_2:-12924241 Msa1235150:CDS
TTGTGGTCAACAAACAACTG+AGG 0.728374 8_2:+12924481 None:intergenic
CAAACTTGGCCCAACCATCG+AGG 0.733200 8_2:+12926916 None:intergenic
AGGAGATAAAGCAAACTGTG+AGG 0.736725 8_2:+12924907 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATTGGATTTTTTTTTT+TGG - chr8_2:12922042-12922061 Msa1235150:intron 10.0%
!!! AAAATTGGATTTTTTTTTTT+GGG - chr8_2:12922043-12922062 Msa1235150:intron 10.0%
!!! TTCAAACATTTTAATCATAA+TGG - chr8_2:12921981-12922000 Msa1235150:CDS 15.0%
!!! TCAAACATTTTAATCATAAT+GGG - chr8_2:12921982-12922001 Msa1235150:CDS 15.0%
!!! AAAGAAGCATATAAAAAAAA+CGG + chr8_2:12922022-12922041 None:intergenic 15.0%
!!! TTATATGCTTCTTTAAAAAT+TGG - chr8_2:12922028-12922047 Msa1235150:intron 15.0%
!!! AAATTGGATTTTTTTTTTTG+GGG - chr8_2:12922533-12922552 Msa1235150:intron 15.0%
!! TGTATTATTTGAATTTGAAT+GGG - chr8_2:12922743-12922762 Msa1235150:CDS 15.0%
!! TCATTTCTTGAATAAAAAAT+AGG - chr8_2:12922883-12922902 Msa1235150:CDS 15.0%
!! AATTTATCTTCTTCAATATA+AGG - chr8_2:12923059-12923078 Msa1235150:intron 15.0%
!!! TTTTATAGATTACATAAACA+TGG + chr8_2:12923493-12923512 None:intergenic 15.0%
!!! ATATTTTTCAATTTCAGAAA+AGG + chr8_2:12923955-12923974 None:intergenic 15.0%
!! TTTCATTTACTATTTGATTA+AGG + chr8_2:12924805-12924824 None:intergenic 15.0%
!! AATCAAATAGTAAATGAAAT+AGG - chr8_2:12924806-12924825 Msa1235150:intron 15.0%
!!! ATTTATTGTGTTGATTTTTT+TGG - chr8_2:12924913-12924932 Msa1235150:CDS 15.0%
!! TTAATTCAATATACTGAAAT+TGG - chr8_2:12926487-12926506 Msa1235150:intron 15.0%
!! GAAATGAAAATACAATATTA+AGG - chr8_2:12926562-12926581 Msa1235150:intron 15.0%
!!! AAAAATAACAAAAGTGTAAT+TGG + chr8_2:12926998-12927017 None:intergenic 15.0%
!! AATGAAACTTTAGACAATTT+AGG - chr8_2:12922116-12922135 Msa1235150:intron 20.0%
!! AGAAAAAAATGTTAACAAAC+AGG - chr8_2:12922407-12922426 Msa1235150:intron 20.0%
!! TTATAAGCTATAAGCTTAAA+GGG - chr8_2:12922450-12922469 Msa1235150:intron 20.0%
!!! TGTTATGCTTCTTTAAAAAT+TGG - chr8_2:12922517-12922536 Msa1235150:intron 20.0%
!!! AATTGGATTTTTTTTTTTGG+GGG - chr8_2:12922534-12922553 Msa1235150:intron 20.0%
!! TTTCAATTTCTTACTTTGAT+GGG - chr8_2:12922597-12922616 Msa1235150:intron 20.0%
!! GTGTATTATTTGAATTTGAA+TGG - chr8_2:12922742-12922761 Msa1235150:CDS 20.0%
!!! TGTTTAGCTTTTAATTCATT+TGG + chr8_2:12922770-12922789 None:intergenic 20.0%
!! TTATGTTAATACAAAAGAAG+AGG - chr8_2:12922795-12922814 Msa1235150:CDS 20.0%
!! TATGTTAATACAAAAGAAGA+GGG - chr8_2:12922796-12922815 Msa1235150:CDS 20.0%
!! TTTATTCAAGAAATGAGAAT+TGG + chr8_2:12922879-12922898 None:intergenic 20.0%
!!! TATGTTTTGATCATTAGTTT+TGG - chr8_2:12923029-12923048 Msa1235150:intron 20.0%
!! AAATATCGTACTTCATATAT+TGG - chr8_2:12923099-12923118 Msa1235150:intron 20.0%
!!! GTTTCTTATTTCACTATATT+CGG - chr8_2:12923414-12923433 Msa1235150:intron 20.0%
!! ATGTAATCTATAAAACATCA+TGG - chr8_2:12923498-12923517 Msa1235150:intron 20.0%
!!! TTATTTTTCATTATCTGATG+TGG - chr8_2:12923845-12923864 Msa1235150:intron 20.0%
!! CAACTCATAATACTATAAAT+TGG - chr8_2:12923979-12923998 Msa1235150:intron 20.0%
!!! TCTTTTTCATTTTTATGGTT+CGG - chr8_2:12924546-12924565 Msa1235150:intron 20.0%
!! AGAGAGAATAAAACATAAAA+GGG + chr8_2:12924624-12924643 None:intergenic 20.0%
!! AAGAGAGAATAAAACATAAA+AGG + chr8_2:12924625-12924644 None:intergenic 20.0%
!!! TCTTTTTTTGCTAGAATTAT+AGG - chr8_2:12924641-12924660 Msa1235150:intron 20.0%
!! AATAAACTCTTATTGGATTA+AGG + chr8_2:12925064-12925083 None:intergenic 20.0%
!! TTAATCCAATAAGAGTTTAT+TGG - chr8_2:12925063-12925082 Msa1235150:intron 20.0%
!! TAATCCAATAAGAGTTTATT+GGG - chr8_2:12925064-12925083 Msa1235150:intron 20.0%
!!! ACATTTTGTTTATAAAAGAG+AGG - chr8_2:12925107-12925126 Msa1235150:intron 20.0%
!!! CATTTTGTTTATAAAAGAGA+GGG - chr8_2:12925108-12925127 Msa1235150:intron 20.0%
!!! AAGTTTTTTAAGAGTTTGTT+AGG - chr8_2:12925156-12925175 Msa1235150:intron 20.0%
!! TAATTATGTTACAAACTACT+TGG - chr8_2:12925382-12925401 Msa1235150:intron 20.0%
!!! TCTAGATTTTGCATAATTTT+CGG + chr8_2:12925412-12925431 None:intergenic 20.0%
!! TTATGGTTCATAATAAATTC+AGG - chr8_2:12925614-12925633 Msa1235150:intron 20.0%
!!! GTAACTGTAAAGAATTTTTA+CGG - chr8_2:12926260-12926279 Msa1235150:intron 20.0%
!! CTATACTATTCAAATGAAAA+AGG - chr8_2:12926431-12926450 Msa1235150:intron 20.0%
!!! AAAAATCAACTAACTCATTT+TGG + chr8_2:12926921-12926940 None:intergenic 20.0%
!! ATTGAAAATTTAATTGCAAC+AGG - chr8_2:12927053-12927072 Msa1235150:five_prime_UTR 20.0%
!! TTTAATTTACTTGAGCATGA+TGG - chr8_2:12922091-12922110 Msa1235150:intron 25.0%
! TTATGGATAGTTAATAAGCT+AGG - chr8_2:12922156-12922175 Msa1235150:intron 25.0%
! ATAGTTAATAAGCTAGGTTA+TGG - chr8_2:12922162-12922181 Msa1235150:intron 25.0%
! CTGATTGAATTTGTAATGTT+TGG - chr8_2:12922243-12922262 Msa1235150:intron 25.0%
! GTAATGTTTGGTAAATTTAG+TGG - chr8_2:12922255-12922274 Msa1235150:intron 25.0%
! ATTACAGAGTTAAAATTGAG+AGG - chr8_2:12922352-12922371 Msa1235150:intron 25.0%
! CTTATAAGCTATAAGCTTAA+AGG - chr8_2:12922449-12922468 Msa1235150:intron 25.0%
!! AAAGAAGCATAACAAAAAAC+AGG + chr8_2:12922511-12922530 None:intergenic 25.0%
!!! ATTGGATTTTTTTTTTTGGG+GGG - chr8_2:12922535-12922554 Msa1235150:intron 25.0%
! GTTTCAATTTCTTACTTTGA+TGG - chr8_2:12922596-12922615 Msa1235150:intron 25.0%
! TTCAATTTCTTACTTTGATG+GGG - chr8_2:12922598-12922617 Msa1235150:intron 25.0%
! CTTGAATAAAAAATAGGAGT+TGG - chr8_2:12922889-12922908 Msa1235150:CDS 25.0%
!! ATATCAACTATCATTTTCCT+AGG + chr8_2:12923603-12923622 None:intergenic 25.0%
!!! ACAAGTCACTTTTTTCATAT+GGG - chr8_2:12923694-12923713 Msa1235150:intron 25.0%
!!! TCAACATTTTGAGAGTATAA+AGG + chr8_2:12923892-12923911 None:intergenic 25.0%
!!! ACCACTCTTTTTCATTTTTA+TGG - chr8_2:12924541-12924560 Msa1235150:intron 25.0%
! ACCATAAAAATGAAAAAGAG+TGG + chr8_2:12924545-12924564 None:intergenic 25.0%
! TTTGCTAGAATTATAGGATT+AGG - chr8_2:12924647-12924666 Msa1235150:intron 25.0%
! ATAGGATTAGGTAAAGAAAA+AGG - chr8_2:12924659-12924678 Msa1235150:intron 25.0%
! TTGATTAAGGATTAAAAGTC+CGG + chr8_2:12924792-12924811 None:intergenic 25.0%
! AAATATGAAAATCACTCTGA+TGG - chr8_2:12924839-12924858 Msa1235150:CDS 25.0%
! AATATGAAAATCACTCTGAT+GGG - chr8_2:12924840-12924859 Msa1235150:CDS 25.0%
! AAATCAACACAATAAATCTC+AGG + chr8_2:12924910-12924929 None:intergenic 25.0%
! GATAGAACTAGTAAATTCAA+AGG + chr8_2:12925318-12925337 None:intergenic 25.0%
!!! TTTACTAGTTCTATCAAACT+CGG - chr8_2:12925323-12925342 Msa1235150:intron 25.0%
!! TAGATTTTGCATAATTTTCG+GGG + chr8_2:12925410-12925429 None:intergenic 25.0%
!! CTAGATTTTGCATAATTTTC+GGG + chr8_2:12925411-12925430 None:intergenic 25.0%
! AATCTAGACATGCTAATAAT+AGG - chr8_2:12925424-12925443 Msa1235150:intron 25.0%
! ACTTATGGAATCAATATGAA+TGG - chr8_2:12925471-12925490 Msa1235150:intron 25.0%
!! AATCAATATGAATGGATTCA+AGG - chr8_2:12925479-12925498 Msa1235150:intron 25.0%
! AGAGTTTGTATGAAAATCAA+GGG + chr8_2:12925533-12925552 None:intergenic 25.0%
! AAGAGTTTGTATGAAAATCA+AGG + chr8_2:12925534-12925553 None:intergenic 25.0%
!! AGATTTAATGCCGAAATTTT+TGG - chr8_2:12925725-12925744 Msa1235150:intron 25.0%
! TAACTTAATCTTTCAACAAC+AGG - chr8_2:12925922-12925941 Msa1235150:intron 25.0%
! TTCAGTTGTTTATCCAAAAA+TGG + chr8_2:12925994-12926013 None:intergenic 25.0%
!! AATCTTGTTTATGATCTTCA+TGG - chr8_2:12926381-12926400 Msa1235150:intron 25.0%
! TACTATTCAAATGAAAAAGG+AGG - chr8_2:12926434-12926453 Msa1235150:intron 25.0%
! AATTAATCAACATTTCACTG+CGG + chr8_2:12926473-12926492 None:intergenic 25.0%
!! TTTTCGAAATGTCTAATTGT+AGG - chr8_2:12926589-12926608 Msa1235150:intron 25.0%
! ATGCATGAAAGTTACAAAAA+TGG + chr8_2:12926840-12926859 None:intergenic 25.0%
! ACTTAAGAGTTATGTTTAGT+TGG - chr8_2:12926950-12926969 Msa1235150:CDS 25.0%
GAAAATGATGAGTGATATGA+GGG + chr8_2:12921802-12921821 None:intergenic 30.0%
TAGACAATTTAGGCTATGTT+TGG - chr8_2:12922126-12922145 Msa1235150:intron 30.0%
CTATGTTTGGCAAGAAATTA+TGG - chr8_2:12922139-12922158 Msa1235150:intron 30.0%
TGTTTGGTAAATTTAGTGGT+TGG - chr8_2:12922259-12922278 Msa1235150:intron 30.0%
GGTTATTGAATGGCTTAAAT+GGG - chr8_2:12922562-12922581 Msa1235150:intron 30.0%
GTTATTGAATGGCTTAAATG+GGG - chr8_2:12922563-12922582 Msa1235150:intron 30.0%
TTATTGAATGGCTTAAATGG+GGG - chr8_2:12922564-12922583 Msa1235150:intron 30.0%
TCAATTTCTTACTTTGATGG+GGG - chr8_2:12922599-12922618 Msa1235150:intron 30.0%
!! ATGTTTGATCTTGTTGTTGA+TGG - chr8_2:12922700-12922719 Msa1235150:intron 30.0%
ACATTGTCTCATATTGTTAC+TGG - chr8_2:12923254-12923273 Msa1235150:intron 30.0%
! ATTATGAGTACGTTGATAAG+TGG + chr8_2:12923458-12923477 None:intergenic 30.0%
AGCTTAATTATGGTCGATAT+AGG - chr8_2:12923550-12923569 Msa1235150:intron 30.0%
TTAATTATGGTCGATATAGG+TGG - chr8_2:12923553-12923572 Msa1235150:intron 30.0%
!!! GACAAGTCACTTTTTTCATA+TGG - chr8_2:12923693-12923712 Msa1235150:intron 30.0%
!!! GAAAAAACACCACTTTTTTG+CGG + chr8_2:12923797-12923816 None:intergenic 30.0%
!!! CAAAAAAGTGGTGTTTTTTC+AGG - chr8_2:12923797-12923816 Msa1235150:intron 30.0%
AGTATAAAGGAAGTCTATCA+TGG + chr8_2:12923879-12923898 None:intergenic 30.0%
CTATAAATTGGATCATGCAA+TGG - chr8_2:12923991-12924010 Msa1235150:intron 30.0%
AAATCAACTGATATAGACTC+GGG + chr8_2:12924192-12924211 None:intergenic 30.0%
CAAATCAACTGATATAGACT+CGG + chr8_2:12924193-12924212 None:intergenic 30.0%
CATTAGTATGTTTGTGTACT+CGG - chr8_2:12924516-12924535 Msa1235150:CDS 30.0%
GAAAAAGGAGAACATAGTTA+AGG - chr8_2:12924674-12924693 Msa1235150:intron 30.0%
!!! GTCCTTTTTTATCATAGTAC+CGG - chr8_2:12924770-12924789 Msa1235150:intron 30.0%
!!! ATTTTTTTGGTCTTAACCTC+TGG - chr8_2:12924926-12924945 Msa1235150:CDS 30.0%
ATCATGACTGAAACAATCAT+TGG + chr8_2:12925012-12925031 None:intergenic 30.0%
ATGTCCCAATAAACTCTTAT+TGG + chr8_2:12925071-12925090 None:intergenic 30.0%
CAAAATGTTCCTAAAACTCA+GGG + chr8_2:12925095-12925114 None:intergenic 30.0%
ACAAAATGTTCCTAAAACTC+AGG + chr8_2:12925096-12925115 None:intergenic 30.0%
CAAAGGTAACACTGTATTAT+TGG + chr8_2:12925301-12925320 None:intergenic 30.0%
!! CATATTGATTCCATAAGTGA+GGG + chr8_2:12925469-12925488 None:intergenic 30.0%
!! TCATATTGATTCCATAAGTG+AGG + chr8_2:12925470-12925489 None:intergenic 30.0%
GAGTTTGTATGAAAATCAAG+GGG + chr8_2:12925532-12925551 None:intergenic 30.0%
! ATACAAACTCTTTTCGTCAT+CGG - chr8_2:12925542-12925561 Msa1235150:intron 30.0%
CGGCAATTATGTTATTGTTA+TGG - chr8_2:12925597-12925616 Msa1235150:intron 30.0%
GCAAACTGAACCAAAAATTT+CGG + chr8_2:12925738-12925757 None:intergenic 30.0%
GAAGATTCACAAAGAAGTTT+GGG - chr8_2:12925774-12925793 Msa1235150:intron 30.0%
AAGATTCACAAAGAAGTTTG+GGG - chr8_2:12925775-12925794 Msa1235150:intron 30.0%
TTGAAAGATTAAGTTAAGCC+GGG + chr8_2:12925918-12925937 None:intergenic 30.0%
GTTGAAAGATTAAGTTAAGC+CGG + chr8_2:12925919-12925938 None:intergenic 30.0%
AAAGATAGTTGCTCTTATCA+AGG + chr8_2:12925958-12925977 None:intergenic 30.0%
TGATAAGAGCAACTATCTTT+AGG - chr8_2:12925958-12925977 Msa1235150:intron 30.0%
AACTATCTTTAGGTGTCTTT+AGG - chr8_2:12925968-12925987 Msa1235150:intron 30.0%
! GTAAAGAATTTTTACGGAGT+AGG - chr8_2:12926266-12926285 Msa1235150:intron 30.0%
TCATTTGAATAGTATAGCCA+AGG + chr8_2:12926428-12926447 None:intergenic 30.0%
TTCAAATGAAAAAGGAGGAA+CGG - chr8_2:12926439-12926458 Msa1235150:intron 30.0%
TCATTTCTGAATCATAGCTA+TGG + chr8_2:12926549-12926568 None:intergenic 30.0%
CAAAGAATCAATCGAAATTC+TGG + chr8_2:12926645-12926664 None:intergenic 30.0%
! TTTCGATTGATTCTTTGAAC+AGG - chr8_2:12926648-12926667 Msa1235150:intron 30.0%
ATTCTTTGAACAGGAAACAT+GGG - chr8_2:12926657-12926676 Msa1235150:intron 30.0%
TATTCACCAAAAAGGAATGA+AGG - chr8_2:12926767-12926786 Msa1235150:CDS 30.0%
ATTCACCAAAAAGGAATGAA+GGG - chr8_2:12926768-12926787 Msa1235150:CDS 30.0%
!! ATGCACTTTTTAATGCAAGA+GGG - chr8_2:12926858-12926877 Msa1235150:CDS 30.0%
!! ATTCTAAAATGAACGATGCA+TGG + chr8_2:12926897-12926916 None:intergenic 30.0%
!!! GAAGAGGTTTTGTTTTGTTG+AGG + chr8_2:12921558-12921577 None:intergenic 35.0%
!! TTGATGATGATGATGTTGTG+CGG + chr8_2:12921628-12921647 None:intergenic 35.0%
CACAACATCATCATCATCAA+TGG - chr8_2:12921628-12921647 Msa1235150:three_prime_UTR 35.0%
!! AGCCATTGATTCATCATTCT+GGG - chr8_2:12921664-12921683 Msa1235150:three_prime_UTR 35.0%
GGAAAATGATGAGTGATATG+AGG + chr8_2:12921803-12921822 None:intergenic 35.0%
! ATCACTCATCATTTTCCCTT+TGG - chr8_2:12921806-12921825 Msa1235150:three_prime_UTR 35.0%
GAGAAGTGACTGAAATGAAA+AGG + chr8_2:12921876-12921895 None:intergenic 35.0%
! ATAAGCTAGCTTGTAGCTTA+TGG - chr8_2:12922209-12922228 Msa1235150:intron 35.0%
! TAAGCTAGCTTGTAGCTTAT+GGG - chr8_2:12922210-12922229 Msa1235150:intron 35.0%
TAAGCTATAAGCTTAAAGGG+TGG - chr8_2:12922453-12922472 Msa1235150:intron 35.0%
!!! GATTTTTTTTTTTGGGGGGT+GGG - chr8_2:12922539-12922558 Msa1235150:intron 35.0%
!!! ATTTTTTTTTTTGGGGGGTG+GGG - chr8_2:12922540-12922559 Msa1235150:intron 35.0%
GGGTTATTGAATGGCTTAAA+TGG - chr8_2:12922561-12922580 Msa1235150:intron 35.0%
TATTGAATGGCTTAAATGGG+GGG - chr8_2:12922565-12922584 Msa1235150:intron 35.0%
!! TTTGATCTTGTTGTTGATGG+TGG - chr8_2:12922703-12922722 Msa1235150:intron 35.0%
!! TTGATCTTGTTGTTGATGGT+GGG - chr8_2:12922704-12922723 Msa1235150:intron 35.0%
TCCAATATCCATGTTTGTGT+CGG - chr8_2:12922929-12922948 Msa1235150:CDS 35.0%
TCCAATATCTGTGTTTGTGT+CGG - chr8_2:12923297-12923316 Msa1235150:intron 35.0%
GCACTCATACAGCTTAATTA+TGG - chr8_2:12923540-12923559 Msa1235150:intron 35.0%
! CAACTATCATTTTCCTAGGA+CGG + chr8_2:12923599-12923618 None:intergenic 35.0%
ATTCAATCTCTCCACAGTTA+AGG - chr8_2:12923650-12923669 Msa1235150:intron 35.0%
!! ATCTGTGTTGTTTGGTTTAG+AGG - chr8_2:12923749-12923768 Msa1235150:intron 35.0%
!! TCTGTGTTGTTTGGTTTAGA+GGG - chr8_2:12923750-12923769 Msa1235150:intron 35.0%
!!! AAAAGTGGTGTTTTTTCAGG+AGG - chr8_2:12923800-12923819 Msa1235150:intron 35.0%
AATTGGATCATGCAATGGTT+TGG - chr8_2:12923996-12924015 Msa1235150:intron 35.0%
CGAGTCTATATCAGTTGATT+TGG - chr8_2:12924191-12924210 Msa1235150:CDS 35.0%
! TTTGGGATGCATAAGAACAA+CGG - chr8_2:12924249-12924268 Msa1235150:CDS 35.0%
CGAGTACACAAACATACTAA+TGG + chr8_2:12924518-12924537 None:intergenic 35.0%
GTCCGGTACTATGATAAAAA+AGG + chr8_2:12924775-12924794 None:intergenic 35.0%
GTCATGATTCAAACTGTGAT+AGG - chr8_2:12925024-12925043 Msa1235150:CDS 35.0%
! GTTAGGAGAGAAATTTTCTC+TGG - chr8_2:12925173-12925192 Msa1235150:intron 35.0%
! AGAGAAATTTTCTCTGGTCT+AGG - chr8_2:12925179-12925198 Msa1235150:intron 35.0%
TGATCTAGAAGCTCTTACAA+TGG + chr8_2:12925266-12925285 None:intergenic 35.0%
GTAACACTGTATTATTGGAC+TGG + chr8_2:12925296-12925315 None:intergenic 35.0%
!!! GTTTGCTATACTTTTCAGCA+AGG - chr8_2:12925752-12925771 Msa1235150:intron 35.0%
GGAAGATTCACAAAGAAGTT+TGG - chr8_2:12925773-12925792 Msa1235150:intron 35.0%
CTAGATATATCTTCAGCTTC+TGG - chr8_2:12925821-12925840 Msa1235150:intron 35.0%
CTTGCGAAGAAAATTCTGAA+TGG - chr8_2:12925845-12925864 Msa1235150:intron 35.0%
TGAAAGATTAAGTTAAGCCG+GGG + chr8_2:12925917-12925936 None:intergenic 35.0%
! TCTGTTTTCATAAGCTACCT+TGG - chr8_2:12926113-12926132 Msa1235150:intron 35.0%
GAGTTTATGGGAACAACTTA+TGG + chr8_2:12926155-12926174 None:intergenic 35.0%
! ATAAACATTCGTGACTGGTT+GGG + chr8_2:12926179-12926198 None:intergenic 35.0%
! AATTTTTACGGAGTAGGAAG+AGG - chr8_2:12926272-12926291 Msa1235150:intron 35.0%
AATGTCTAATTGTAGGTTGC+AGG - chr8_2:12926596-12926615 Msa1235150:intron 35.0%
GATTCTTTGAACAGGAAACA+TGG - chr8_2:12926656-12926675 Msa1235150:intron 35.0%
GCTGCAAATGAAATCTTCAA+TGG + chr8_2:12926687-12926706 None:intergenic 35.0%
AGTCTGGAAAAATTGTTGCT+TGG - chr8_2:12926744-12926763 Msa1235150:CDS 35.0%
TTGCTTGGTATTCACCAAAA+AGG - chr8_2:12926759-12926778 Msa1235150:CDS 35.0%
!! CATGCACTTTTTAATGCAAG+AGG - chr8_2:12926857-12926876 Msa1235150:CDS 35.0%
TGAAGTGAAGTGAAGTGAAG+AGG + chr8_2:12921574-12921593 None:intergenic 40.0%
! TGATGATGATGATGTTGTGC+GGG + chr8_2:12921627-12921646 None:intergenic 40.0%
CATCATCATCATCAATGGCT+AGG - chr8_2:12921633-12921652 Msa1235150:three_prime_UTR 40.0%
!! CAGCCATTGATTCATCATTC+TGG - chr8_2:12921663-12921682 Msa1235150:three_prime_UTR 40.0%
GTCCCAGAATGATGAATCAA+TGG + chr8_2:12921669-12921688 None:intergenic 40.0%
TGATATGAGGGAGTTGTTGA+TGG + chr8_2:12921790-12921809 None:intergenic 40.0%
AAGGAACCATACTCCTTCTT+GGG + chr8_2:12921857-12921876 None:intergenic 40.0%
AAAGGAACCATACTCCTTCT+TGG + chr8_2:12921858-12921877 None:intergenic 40.0%
TCACTTCTCCTTGATTTCAC+TGG - chr8_2:12921887-12921906 Msa1235150:CDS 40.0%
AACGATGACCAGTGAAATCA+AGG + chr8_2:12921898-12921917 None:intergenic 40.0%
TTGATTTCACTGGTCATCGT+TGG - chr8_2:12921897-12921916 Msa1235150:CDS 40.0%
! AAGCTAGCTTGTAGCTTATG+GGG - chr8_2:12922211-12922230 Msa1235150:intron 40.0%
!! AGGGTGGTTTCTGTTTTTCA+TGG - chr8_2:12922469-12922488 Msa1235150:intron 40.0%
!! GGGTGGTTTCTGTTTTTCAT+GGG - chr8_2:12922470-12922489 Msa1235150:intron 40.0%
!!! GGATTTTTTTTTTTGGGGGG+TGG - chr8_2:12922538-12922557 Msa1235150:intron 40.0%
!!! TTTTTTTTTTTGGGGGGTGG+GGG - chr8_2:12922541-12922560 Msa1235150:intron 40.0%
ACCGACACAAACATGGATAT+TGG + chr8_2:12922933-12922952 None:intergenic 40.0%
CTAAACATGTGATGTCGTGT+TGG + chr8_2:12923218-12923237 None:intergenic 40.0%
ACCGACACAAACACAGATAT+TGG + chr8_2:12923301-12923320 None:intergenic 40.0%
AGGAGATAAAGCAAACTGTG+AGG + chr8_2:12923724-12923743 None:intergenic 40.0%
CCAAACAACACAGATGTTGA+AGG + chr8_2:12923744-12923763 None:intergenic 40.0%
! CCTTCAACATCTGTGTTGTT+TGG - chr8_2:12923741-12923760 Msa1235150:intron 40.0%
TTCTGATCACGATCTTACAG+TGG - chr8_2:12924113-12924132 Msa1235150:intron 40.0%
TTGTGGTCAACAAACAACTG+AGG + chr8_2:12924150-12924169 None:intergenic 40.0%
! CAGTTGTTTGTTGACCACAA+AGG - chr8_2:12924150-12924169 Msa1235150:intron 40.0%
TTGACCACAAAGGAAGATAC+TGG - chr8_2:12924160-12924179 Msa1235150:intron 40.0%
TGACCACAAAGGAAGATACT+GGG - chr8_2:12924161-12924180 Msa1235150:intron 40.0%
TGTTCTTATGCATCCCAAAG+CGG + chr8_2:12924248-12924267 None:intergenic 40.0%
ACGATAAGATCAAGTACCTC+TGG - chr8_2:12924355-12924374 Msa1235150:CDS 40.0%
! GCAGCAGTATCTGGAATTAT+TGG - chr8_2:12924447-12924466 Msa1235150:CDS 40.0%
GGATCTGGTAATACGGAATT+CGG - chr8_2:12924964-12924983 Msa1235150:CDS 40.0%
GTTACAAACTCCCTCACTTA+TGG - chr8_2:12925456-12925475 Msa1235150:intron 40.0%
TTTCGTCATCGGTGAATTGA+TGG - chr8_2:12925553-12925572 Msa1235150:intron 40.0%
! CGGGAAGAACCTTATTGATT+CGG - chr8_2:12925664-12925683 Msa1235150:intron 40.0%
!! GGGAAGAACCTTATTGATTC+GGG - chr8_2:12925665-12925684 Msa1235150:intron 40.0%
TTTCTTCTCTTTGACACAGC+TGG + chr8_2:12925698-12925717 None:intergenic 40.0%
!! AGGTGTCTTTAGGCCATTTT+TGG - chr8_2:12925978-12925997 Msa1235150:intron 40.0%
! TAAACATTCGTGACTGGTTG+GGG + chr8_2:12926178-12926197 None:intergenic 40.0%
CATAAACATTCGTGACTGGT+TGG + chr8_2:12926180-12926199 None:intergenic 40.0%
TCAGCATAAACATTCGTGAC+TGG + chr8_2:12926184-12926203 None:intergenic 40.0%
AACCATGATTGTAGACACCT+TGG - chr8_2:12926408-12926427 Msa1235150:intron 40.0%
CTGAAATTGGCATTGTGTTC+CGG - chr8_2:12926500-12926519 Msa1235150:intron 40.0%
GAATCTGCTCGAAATACAAC+TGG + chr8_2:12926623-12926642 None:intergenic 40.0%
ACCAAAAAGGAATGAAGGGA+TGG - chr8_2:12926772-12926791 Msa1235150:CDS 40.0%
! ACCATCCCTTCATTCCTTTT+TGG + chr8_2:12926776-12926795 None:intergenic 40.0%
TCCACAAAACCTCGATGGTT+GGG - chr8_2:12921703-12921722 Msa1235150:three_prime_UTR 45.0%
! CTGAAGCGTCAAGAGGAATA+GGG + chr8_2:12921748-12921767 None:intergenic 45.0%
! ACTGAAGCGTCAAGAGGAAT+AGG + chr8_2:12921749-12921768 None:intergenic 45.0%
GAGGAAGGGATAATGCCAAA+GGG + chr8_2:12921824-12921843 None:intergenic 45.0%
TGAGGAAGGGATAATGCCAA+AGG + chr8_2:12921825-12921844 None:intergenic 45.0%
AAGCTAGGTTATGGCGAATG+AGG - chr8_2:12922171-12922190 Msa1235150:intron 45.0%
!! ATGAAGCACCGACACAAACA+TGG + chr8_2:12922940-12922959 None:intergenic 45.0%
! GCACTGACACTTCAGATTGA+AGG - chr8_2:12923157-12923176 Msa1235150:intron 45.0%
CTTTGCAACGTCCTTAACTG+TGG + chr8_2:12923664-12923683 None:intergenic 45.0%
! TTGTTTGGTTTAGAGGGCCA+TGG - chr8_2:12923756-12923775 Msa1235150:intron 45.0%
!! GGCGCTTTTCTTTTTCACCA+TGG + chr8_2:12923776-12923795 None:intergenic 45.0%
!! AGAAAAGCGCCGCAAAAAAG+TGG - chr8_2:12923785-12923804 Msa1235150:intron 45.0%
TGATCACGATCTTACAGTGG+AGG - chr8_2:12924116-12924135 Msa1235150:intron 45.0%
CATCCCAGTATCTTCCTTTG+TGG + chr8_2:12924167-12924186 None:intergenic 45.0%
!! AGTTGATTTGGCATCCCTTG+TGG - chr8_2:12924203-12924222 Msa1235150:CDS 45.0%
TAAGAACAACGGTAGTCCTC+AGG - chr8_2:12924260-12924279 Msa1235150:CDS 45.0%
TCAGTTGCATTAGTAGCCTG+AGG + chr8_2:12924279-12924298 None:intergenic 45.0%
! CAAGTACCTCTGGAGAAACA+CGG - chr8_2:12924365-12924384 Msa1235150:CDS 45.0%
! GGCTTGTTTCCACATTACCA+CGG - chr8_2:12924408-12924427 Msa1235150:CDS 45.0%
TCCACATTACCACGGACTTA+TGG - chr8_2:12924416-12924435 Msa1235150:CDS 45.0%
! ACCATAAGTCCGTGGTAATG+TGG + chr8_2:12924420-12924439 None:intergenic 45.0%
ATTCCAGATACTGCTGCATG+AGG + chr8_2:12924444-12924463 None:intergenic 45.0%
GGAAAGGGGATCTGGTAATA+CGG - chr8_2:12924957-12924976 Msa1235150:CDS 45.0%
CTGGTAATACGGAATTCGGA+CGG - chr8_2:12924968-12924987 Msa1235150:CDS 45.0%
TGGTAATACGGAATTCGGAC+GGG - chr8_2:12924969-12924988 Msa1235150:CDS 45.0%
TTCAAACTGTGATAGGACCC+TGG - chr8_2:12925031-12925050 Msa1235150:CDS 45.0%
TCAAACTGTGATAGGACCCT+GGG - chr8_2:12925032-12925051 Msa1235150:CDS 45.0%
! TGGGACATTCCCTGAGTTTT+AGG - chr8_2:12925083-12925102 Msa1235150:intron 45.0%
AAGCCTAGTGAGTGAGTCAT+TGG - chr8_2:12925131-12925150 Msa1235150:intron 45.0%
AGCCTAGTGAGTGAGTCATT+GGG - chr8_2:12925132-12925151 Msa1235150:intron 45.0%
TTCCCAATGACTCACTCACT+AGG + chr8_2:12925137-12925156 None:intergenic 45.0%
GTTAGGAGTTCGTAGAACTC+TGG - chr8_2:12925214-12925233 Msa1235150:intron 45.0%
! ATTGATGGTTGTTAGCTCGC+TGG - chr8_2:12925568-12925587 Msa1235150:intron 45.0%
TGTTAGCTCGCTGGACATTA+CGG - chr8_2:12925577-12925596 Msa1235150:intron 45.0%
TGTGCTTCCTGGATTTGGAA+CGG - chr8_2:12925644-12925663 Msa1235150:intron 45.0%
!! GAACCTTATTGATTCGGGAG+AGG - chr8_2:12925670-12925689 Msa1235150:intron 45.0%
GATCCTCTCCCGAATCAATA+AGG + chr8_2:12925676-12925695 None:intergenic 45.0%
AGAAGTTTGGGGACTTAACC+CGG - chr8_2:12925786-12925805 Msa1235150:intron 45.0%
TATCTAGACGAGCATCTACC+CGG + chr8_2:12925808-12925827 None:intergenic 45.0%
AAGCTACCTTGGAGAGCTTA+TGG - chr8_2:12926124-12926143 Msa1235150:intron 45.0%
! AAACATTCGTGACTGGTTGG+GGG + chr8_2:12926177-12926196 None:intergenic 45.0%
! AGCCAAGGTGTCTACAATCA+TGG + chr8_2:12926413-12926432 None:intergenic 45.0%
ATTGGCATTGTGTTCCGGAT+CGG - chr8_2:12926505-12926524 Msa1235150:intron 45.0%
!! ACTCCACATCGCTAGCTTTA+GGG + chr8_2:12926727-12926746 None:intergenic 45.0%
TCCTCTCCACAAAACCTCGA+TGG - chr8_2:12921698-12921717 Msa1235150:three_prime_UTR 50.0%
!! ACCATCGAGGTTTTGTGGAG+AGG + chr8_2:12921702-12921721 None:intergenic 50.0%
CTCCACAAAACCTCGATGGT+TGG - chr8_2:12921702-12921721 Msa1235150:three_prime_UTR 50.0%
AGGGTCACCAGGAACAAACT+TGG + chr8_2:12921729-12921748 None:intergenic 50.0%
TCAAGAGGAATAGGGTCACC+AGG + chr8_2:12921740-12921759 None:intergenic 50.0%
! CTGGAAACTGAAGCGTCAAG+AGG + chr8_2:12921755-12921774 None:intergenic 50.0%
!! TTGATGGCGATAGAGTCTGC+TGG + chr8_2:12921774-12921793 None:intergenic 50.0%
CCATACTCCTTCTTGGGAGA+AGG + chr8_2:12921851-12921870 None:intergenic 50.0%
CCTTCTCCCAAGAAGGAGTA+TGG - chr8_2:12921848-12921867 Msa1235150:CDS 50.0%
! TATAGGTGGCTTGCAGCAAC+TGG - chr8_2:12923567-12923586 Msa1235150:intron 50.0%
CAACTGGACAATTCCGTCCT+AGG - chr8_2:12923583-12923602 Msa1235150:intron 50.0%
ATCTTACAGTGGAGGCAGCA+TGG - chr8_2:12924124-12924143 Msa1235150:intron 50.0%
ATCGTAAGTAACAGCCGCCT+TGG + chr8_2:12924340-12924359 None:intergenic 50.0%
GAGACTGAGGAGGAATACGA+AGG - chr8_2:12924387-12924406 Msa1235150:CDS 50.0%
! CATGAGGTACCATAAGTCCG+TGG + chr8_2:12924428-12924447 None:intergenic 50.0%
GTACCTCATGCAGCAGTATC+TGG - chr8_2:12924438-12924457 Msa1235150:CDS 50.0%
GTCTTAACCTCTGGTCCCTA+GGG - chr8_2:12924935-12924954 Msa1235150:CDS 50.0%
TCTTAACCTCTGGTCCCTAG+GGG - chr8_2:12924936-12924955 Msa1235150:CDS 50.0%
TAATACGGAATTCGGACGGG+AGG - chr8_2:12924972-12924991 Msa1235150:CDS 50.0%
TGTGATAGGACCCTGGGTTT+GGG - chr8_2:12925038-12925057 Msa1235150:CDS 50.0%
TGGATTAAGGCCCAAACCCA+GGG + chr8_2:12925051-12925070 None:intergenic 50.0%
TTGGATTAAGGCCCAAACCC+AGG + chr8_2:12925052-12925071 None:intergenic 50.0%
ACGAACTCCTAACCAGAGCT+AGG + chr8_2:12925207-12925226 None:intergenic 50.0%
! GTTCCAAATCCAGGAAGCAC+AGG + chr8_2:12925645-12925664 None:intergenic 50.0%
! GTGCTTCCTGGATTTGGAAC+GGG - chr8_2:12925645-12925664 Msa1235150:intron 50.0%
GTTCTTCCCGTTCCAAATCC+AGG + chr8_2:12925654-12925673 None:intergenic 50.0%
GAAGTTTGGGGACTTAACCC+GGG - chr8_2:12925787-12925806 Msa1235150:intron 50.0%
ATCTAGACGAGCATCTACCC+GGG + chr8_2:12925807-12925826 None:intergenic 50.0%
GATTAAGTTAAGCCGGGGTG+AGG + chr8_2:12925912-12925931 None:intergenic 50.0%
GCATGTCCATAAGCTCTCCA+AGG + chr8_2:12926133-12926152 None:intergenic 50.0%
! GACTGGTTGGGGGAGTTTAT+GGG + chr8_2:12926167-12926186 None:intergenic 50.0%
! TGACTGGTTGGGGGAGTTTA+TGG + chr8_2:12926168-12926187 None:intergenic 50.0%
CCAGCTGTGATAAACCGATC+CGG + chr8_2:12926522-12926541 None:intergenic 50.0%
TGACCCTAAAGCTAGCGATG+TGG - chr8_2:12926721-12926740 Msa1235150:intron 50.0%
!! GACTCCACATCGCTAGCTTT+AGG + chr8_2:12926728-12926747 None:intergenic 50.0%
AAAGCTAGCGATGTGGAGTC+TGG - chr8_2:12926728-12926747 Msa1235150:intron 50.0%
! GCCCAACCATCGAGGTTTTG+TGG + chr8_2:12921707-12921726 None:intergenic 55.0%
CAAACTTGGCCCAACCATCG+AGG + chr8_2:12921715-12921734 None:intergenic 55.0%
! GGTTGGGCCAAGTTTGTTCC+TGG - chr8_2:12921719-12921738 Msa1235150:three_prime_UTR 55.0%
TGGGAGAAGGAGCTGAGGAA+GGG + chr8_2:12921838-12921857 None:intergenic 55.0%
TTGGGAGAAGGAGCTGAGGA+AGG + chr8_2:12921839-12921858 None:intergenic 55.0%
CTTCTTGGGAGAAGGAGCTG+AGG + chr8_2:12921843-12921862 None:intergenic 55.0%
CTCAGCTCCTTCTCCCAAGA+AGG - chr8_2:12921841-12921860 Msa1235150:CDS 55.0%
TGGCTTAAATGGGGGGCAGT+AGG - chr8_2:12922572-12922591 Msa1235150:intron 55.0%
GGCTTAAATGGGGGGCAGTA+GGG - chr8_2:12922573-12922592 Msa1235150:intron 55.0%
GCTTAAATGGGGGGCAGTAG+GGG - chr8_2:12922574-12922593 Msa1235150:intron 55.0%
GGGGATTGCGATACCGCTTT+GGG - chr8_2:12924232-12924251 Msa1235150:CDS 55.0%
AACCCTGGCAGTAGAGACAG+CGG + chr8_2:12924312-12924331 None:intergenic 55.0%
ACTGCCAGGGTTATGTGCCA+AGG - chr8_2:12924320-12924339 Msa1235150:CDS 55.0%
CAGTCTCCGTGTTTCTCCAG+AGG + chr8_2:12924374-12924393 None:intergenic 55.0%
CTGGAGAAACACGGAGACTG+AGG - chr8_2:12924374-12924393 Msa1235150:CDS 55.0%
GAGAAACACGGAGACTGAGG+AGG - chr8_2:12924377-12924396 Msa1235150:CDS 55.0%
GGTCTTAACCTCTGGTCCCT+AGG - chr8_2:12924934-12924953 Msa1235150:CDS 55.0%
ACCAGATCCCCTTTCCCCTA+GGG + chr8_2:12924953-12924972 None:intergenic 55.0%
TACCAGATCCCCTTTCCCCT+AGG + chr8_2:12924954-12924973 None:intergenic 55.0%
CTGTGATAGGACCCTGGGTT+TGG - chr8_2:12925037-12925056 Msa1235150:CDS 55.0%
!! CTAGGAGCCTAGCTCTGGTT+AGG - chr8_2:12925197-12925216 Msa1235150:intron 55.0%
GCTCCTGTGCTTCCTGGATT+TGG - chr8_2:12925639-12925658 Msa1235150:intron 55.0%
! CCGGATCGGTTTATCACAGC+TGG - chr8_2:12926519-12926538 Msa1235150:intron 55.0%
GGGGGGTGGGGGTTATTGAA+TGG - chr8_2:12922552-12922571 Msa1235150:intron 60.0%
TGGCATCCCTTGTGGCTCGT+CGG - chr8_2:12924211-12924230 Msa1235150:CDS 60.0%
CAATCCCCGACGAGCCACAA+GGG + chr8_2:12924220-12924239 None:intergenic 60.0%
CGGGGATTGCGATACCGCTT+TGG - chr8_2:12924231-12924250 Msa1235150:CDS 60.0%
ACACCGCTGTCTCTACTGCC+AGG - chr8_2:12924306-12924325 Msa1235150:CDS 60.0%
CACCGCTGTCTCTACTGCCA+GGG - chr8_2:12924307-12924326 Msa1235150:CDS 60.0%
GCCAGGGTTATGTGCCAAGG+CGG - chr8_2:12924323-12924342 Msa1235150:CDS 60.0%
ACCTCTGGTCCCTAGGGGAA+AGG - chr8_2:12924941-12924960 Msa1235150:CDS 60.0%
CCTCTGGTCCCTAGGGGAAA+GGG - chr8_2:12924942-12924961 Msa1235150:CDS 60.0%
CTCTGGTCCCTAGGGGAAAG+GGG - chr8_2:12924943-12924962 Msa1235150:CDS 60.0%
TCCCTAGGGGAAAGGGGATC+TGG - chr8_2:12924949-12924968 Msa1235150:CDS 60.0%
CTGGTCTAGGAGCCTAGCTC+TGG - chr8_2:12925192-12925211 Msa1235150:intron 60.0%
CAGGTAGCTCCTGTGCTTCC+TGG - chr8_2:12925633-12925652 Msa1235150:intron 60.0%
AACAACCGTCAGCCTCACCC+CGG - chr8_2:12925897-12925916 Msa1235150:intron 60.0%
TTAAGCCGGGGTGAGGCTGA+CGG + chr8_2:12925905-12925924 None:intergenic 60.0%
GGCATCCCTTGTGGCTCGTC+GGG - chr8_2:12924212-12924231 Msa1235150:CDS 65.0%
GCATCCCTTGTGGCTCGTCG+GGG - chr8_2:12924213-12924232 Msa1235150:CDS 65.0%
GCAATCCCCGACGAGCCACA+AGG + chr8_2:12924221-12924240 None:intergenic 65.0%
GCCGCCTTGGCACATAACCC+TGG + chr8_2:12924327-12924346 None:intergenic 65.0%
CCCTTTCCCCTAGGGACCAG+AGG + chr8_2:12924945-12924964 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 12921545 12927105 12921545 ID=Msa1235150;Name=Msa1235150
chr8_2 mRNA 12921545 12927105 12921545 ID=Msa1235150-mRNA-1;Parent=Msa1235150;Name=Msa1235150-mRNA-1;_AED=0.03;_eAED=0.03;_QI=102|1|1|1|1|1|5|285|465
chr8_2 exon 12921545 12922039 12921545 ID=Msa1235150-mRNA-1:exon:5031;Parent=Msa1235150-mRNA-1
chr8_2 exon 12922707 12923014 12922707 ID=Msa1235150-mRNA-1:exon:5030;Parent=Msa1235150-mRNA-1
chr8_2 exon 12924182 12924539 12924182 ID=Msa1235150-mRNA-1:exon:5029;Parent=Msa1235150-mRNA-1
chr8_2 exon 12924829 12925078 12924829 ID=Msa1235150-mRNA-1:exon:5028;Parent=Msa1235150-mRNA-1
chr8_2 exon 12926732 12927105 12926732 ID=Msa1235150-mRNA-1:exon:5027;Parent=Msa1235150-mRNA-1
chr8_2 five_prime_UTR 12927004 12927105 12927004 ID=Msa1235150-mRNA-1:five_prime_utr;Parent=Msa1235150-mRNA-1
chr8_2 CDS 12926732 12927003 12926732 ID=Msa1235150-mRNA-1:cds;Parent=Msa1235150-mRNA-1
chr8_2 CDS 12924829 12925078 12924829 ID=Msa1235150-mRNA-1:cds;Parent=Msa1235150-mRNA-1
chr8_2 CDS 12924182 12924539 12924182 ID=Msa1235150-mRNA-1:cds;Parent=Msa1235150-mRNA-1
chr8_2 CDS 12922707 12923014 12922707 ID=Msa1235150-mRNA-1:cds;Parent=Msa1235150-mRNA-1
chr8_2 CDS 12921830 12922039 12921830 ID=Msa1235150-mRNA-1:cds;Parent=Msa1235150-mRNA-1
chr8_2 three_prime_UTR 12921545 12921829 12921545 ID=Msa1235150-mRNA-1:three_prime_utr;Parent=Msa1235150-mRNA-1
Gene Sequence

>Msa1235150

ATGGCTAGGCTCAGAACAGCCATTGATTCATCATTCTGGGACTTAAACATATCCTCTCCACAAAACCTCGATGGTTGGGCCAAGTTTGTTCCTGGTGACCCTATTCCTCTTGACGCTTCAGTTTCCAGCAGACTCTATCGCCATCAACAACTCCCTCATATCACTCATCATTTTCCCTTTGGCATTATCCCTTCCTCAGCTCCTTCTCCCAAGAAGGAGTATGGTTCCTTTTCATTTCAGTCACTTCTCCTTGATTTCACTGGTCATCGTTGGTGGCTTGCAGCAACTGGACAATTCCGTCCTAGGAAAATGATAGTTGATATTAAAAATGAGATTCGTAATGCTGCTGAATTCAATCTCTCCACAGTTAAGGACGTTGCAAAGCATTTCATTGACAAGTCACTTTTTTCATATGGGTTAACCTCACAGTTTGCTTTATCTCCTTCAACATCTGTGTTGTTTGGTTTAGAGGGCCATGGTGAAAAAGAAAAGCGCCGCAAAAAAGTGGTGTTTTTTCAGGAGCTTTCTGATCACGATCTTACAGTGGAGGCAGCATGGCCTCAGTTGTTTGTTGACCACAAAGGAAGATACTGGGATGTTCCCGAGTCTATATCAGTTGATTTGGCATCCCTTGTGGCTCGTCGGGGATTGCGATACCGCTTTGGGATGCATAAGAACAACGGTAGTCCTCAGGCTACTAATGCAACTGATAGCGACACACCGCTGTCTCTACTGCCAGGGTTATGTGCCAAGGCGGCTGTTACTTACGATAAGATCAAGTACCTCTGGAGAAACACGGAGACTGAGGAGGAATACGAAGGCTTGTTTCCACATTACCACGGACTTATGGTACCTCATGCAGCAGTATCTGGAATTATTGGTAGCTCCTGTGCTTCCTGGATTTGGAACGGGAAGAACCTTATTGATTCGGGAGAGGATCCAGCTGTGTCAAAGAGAAGAAAGAGATCTAGATTTAATGCCGAAATTTTTGGTTCAGTTTGCTATACTTTTCAGCAAGGAAGATTCACAAAGAAGTTTGGGGACTTAACCCGGGTAGATGCTCGTCTAGATATATCTTCAGCTTCTGGACTTGCGAAGAAAATTCTGAATGGTTTCAAGAGTTCTAGTGCTGACGTTATTGAACAACCGTCAGCCTCACCCCGGCTTAACTTAATCTTTCAACAACAGGTTGCAGGTCCAGTTGTATTTCGAGCAGATTCCAGAATTTCGATTGATTCTTTGAACAGGAAACATGGGATCTCCATTGAAGATTTCATTTGCAGCTTGAATTTCTACATTGACCCTAAAGCTAGCGATGTGGAGTCTGGAAAAATTGTTGCTTGGTATTCACCAAAAAGGAATGAAGGGATGGTTGAATTGCGCTTATACGAGTTTTAA

Protein sequence

>Msa1235150

MARLRTAIDSSFWDLNISSPQNLDGWAKFVPGDPIPLDASVSSRLYRHQQLPHITHHFPFGIIPSSAPSPKKEYGSFSFQSLLLDFTGHRWWLAATGQFRPRKMIVDIKNEIRNAAEFNLSTVKDVAKHFIDKSLFSYGLTSQFALSPSTSVLFGLEGHGEKEKRRKKVVFFQELSDHDLTVEAAWPQLFVDHKGRYWDVPESISVDLASLVARRGLRYRFGMHKNNGSPQATNATDSDTPLSLLPGLCAKAAVTYDKIKYLWRNTETEEEYEGLFPHYHGLMVPHAAVSGIIGSSCASWIWNGKNLIDSGEDPAVSKRRKRSRFNAEIFGSVCYTFQQGRFTKKFGDLTRVDARLDISSASGLAKKILNGFKSSSADVIEQPSASPRLNLIFQQQVAGPVVFRADSRISIDSLNRKHGISIEDFICSLNFYIDPKASDVESGKIVAWYSPKRNEGMVELRLYEF*