Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388240 | XP_003611626.2 | 96.660 | 539 | 9 | 1 | 1 | 539 | 1 | 530 | 0.0 | 1068 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388240 | sp|Q9SZV0|RNC1_ARATH | 77.909 | 507 | 101 | 3 | 34 | 539 | 41 | 537 | 0.0 | 823 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388240 | G7K3W4 | 96.660 | 539 | 9 | 1 | 1 | 539 | 1 | 530 | 0.0 | 1068 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026110 | Msa1388240 | 0.838015 | 3.695864e-57 | -8.615850e-47 |
| Msa0073820 | Msa1388240 | 0.802210 | 6.251026e-49 | -8.615850e-47 |
| Msa1388240 | Msa1438360 | 0.803211 | 3.885014e-49 | -8.615850e-47 |
| Msa0620020 | Msa1388240 | 0.802883 | 4.540210e-49 | -8.615850e-47 |
| Msa0639370 | Msa1388240 | 0.864157 | 1.487473e-64 | -8.615850e-47 |
| Msa0661470 | Msa1388240 | 0.804787 | 1.826972e-49 | -8.615850e-47 |
| Msa0682460 | Msa1388240 | 0.837244 | 5.827139e-57 | -8.615850e-47 |
| Msa0714030 | Msa1388240 | 0.992533 | 7.301495e-194 | -8.615850e-47 |
| Msa0714170 | Msa1388240 | 0.991178 | 2.740166e-186 | -8.615850e-47 |
| Msa0756470 | Msa1388240 | 0.894170 | 3.170675e-75 | -8.615850e-47 |
| Msa0767520 | Msa1388240 | 0.811857 | 5.676438e-51 | -8.615850e-47 |
| Msa0783340 | Msa1388240 | 0.812708 | 3.700070e-51 | -8.615850e-47 |
| Msa0819440 | Msa1388240 | 0.808429 | 3.110731e-50 | -8.615850e-47 |
| Msa0835520 | Msa1388240 | 0.909669 | 4.409202e-82 | -8.615850e-47 |
| Msa0121800 | Msa1388240 | 0.852686 | 3.921657e-61 | -8.615850e-47 |
| Msa0140290 | Msa1388240 | 0.803489 | 3.401423e-49 | -8.615850e-47 |
| Msa0166570 | Msa1388240 | 0.851688 | 7.542273e-61 | -8.615850e-47 |
| Msa0171920 | Msa1388240 | 0.830408 | 2.987395e-55 | -8.615850e-47 |
| Msa1272210 | Msa1388240 | 0.802429 | 5.634792e-49 | -8.615850e-47 |
| Msa1281270 | Msa1388240 | 0.828216 | 1.016780e-54 | -8.615850e-47 |
| Msa1309960 | Msa1388240 | 0.833337 | 5.650321e-56 | -8.615850e-47 |
| Msa1317030 | Msa1388240 | 0.803681 | 3.104227e-49 | -8.615850e-47 |
| Msa1318180 | Msa1388240 | 0.800725 | 1.259575e-48 | -8.615850e-47 |
| Msa1320380 | Msa1388240 | 0.824605 | 7.373746e-54 | -8.615850e-47 |
| Msa0380650 | Msa1388240 | 0.803104 | 4.087564e-49 | -8.615850e-47 |
| Msa0436090 | Msa1388240 | 0.804455 | 2.142140e-49 | -8.615850e-47 |
| Msa0464860 | Msa1388240 | 0.804263 | 2.349607e-49 | -8.615850e-47 |
| Msa0481490 | Msa1388240 | 0.822101 | 2.835729e-53 | -8.615850e-47 |
| Msa1033790 | Msa1388240 | 0.824487 | 7.859569e-54 | -8.615850e-47 |
| Msa1035510 | Msa1388240 | 0.833789 | 4.357702e-56 | -8.615850e-47 |
| Msa1041410 | Msa1388240 | -0.802822 | 4.674888e-49 | -8.615850e-47 |
| Msa1075420 | Msa1388240 | 0.832908 | 7.228048e-56 | -8.615850e-47 |
| Msa0267340 | Msa1388240 | 0.808444 | 3.087679e-50 | -8.615850e-47 |
| Msa1116550 | Msa1388240 | 0.815870 | 7.405787e-52 | -8.615850e-47 |
| Msa1118150 | Msa1388240 | 0.818439 | 1.958713e-52 | -8.615850e-47 |
| Msa1163050 | Msa1388240 | 0.817387 | 3.385976e-52 | -8.615850e-47 |
| Msa1166600 | Msa1388240 | -0.801238 | 9.896430e-49 | -8.615850e-47 |
| Msa1177240 | Msa1388240 | 0.815046 | 1.129652e-51 | -8.615850e-47 |
| Msa0506760 | Msa1388240 | 0.807167 | 5.769124e-50 | -8.615850e-47 |
| Msa0522660 | Msa1388240 | 0.803393 | 3.561147e-49 | -8.615850e-47 |
| Msa0583170 | Msa1388240 | 0.807990 | 3.858160e-50 | -8.615850e-47 |
| Msa0583740 | Msa1388240 | 0.813949 | 1.975611e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388240 | MtrunA17_Chr5g0401461 | 95.918 | 539 | 9 | 1 | 1 | 539 | 1 | 526 | 0.0 | 1058 |
| Msa1388240 | MtrunA17_Chr4g0053831 | 70.874 | 515 | 129 | 6 | 26 | 537 | 23 | 519 | 0.0 | 753 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388240 | AT4G37510.1 | 77.909 | 507 | 101 | 3 | 34 | 539 | 41 | 537 | 0.0 | 823 |
| Msa1388240 | AT2G48121.2 | 75.325 | 77 | 19 | 0 | 463 | 539 | 1 | 77 | 4.47e-34 | 124 |
| Msa1388240 | AT2G48121.1 | 75.000 | 56 | 14 | 0 | 484 | 539 | 20 | 75 | 4.91e-22 | 90.5 |
Find 142 sgRNAs with CRISPR-Local
Find 336 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATCGTAGGTCGGTATTT+TGG | 0.109591 | tig0021037:+98241 | Msa1388240:intron |
| GTTTGATACTTTGTTGTATT+TGG | 0.144675 | tig0021037:+97005 | Msa1388240:CDS |
| GGACTCTCATATCTTGTTTA+TGG | 0.145537 | tig0021037:+100906 | Msa1388240:CDS |
| AATGAGAAGTTAGTTGGTTT+TGG | 0.179441 | tig0021037:-96556 | None:intergenic |
| GCAAGATATTGTTGCTTATA+AGG | 0.188751 | tig0021037:+98431 | Msa1388240:CDS |
| CCGATGAGGGAGAGAGTTTA+TGG | 0.193361 | tig0021037:+97171 | Msa1388240:CDS |
| GGAGGGGTTGTGAAGATTAA+TGG | 0.211332 | tig0021037:-96446 | None:intergenic |
| TTCCTGGCTTCGGTAATTTC+TGG | 0.213137 | tig0021037:-98843 | None:intergenic |
| GGGTTTGTGTTGCTGGGTTT+TGG | 0.218590 | tig0021037:-96368 | None:intergenic |
| GATTATTTGAAAATTCAATT+TGG | 0.228145 | tig0021037:+101290 | Msa1388240:three_prime_UTR |
| CATTGTAGATGAAGGGGTTT+GGG | 0.240337 | tig0021037:-96391 | None:intergenic |
| GATATTTCCTTATGATAATA+TGG | 0.242859 | tig0021037:+97251 | Msa1388240:CDS |
| TCTCATATTTAGACCTCTTT+AGG | 0.265901 | tig0021037:-100984 | None:intergenic |
| GGGGCAATCTATCTTTGTTT+TGG | 0.268972 | tig0021037:+98273 | Msa1388240:CDS |
| TTAACAATGCCGATAAATTA+TGG | 0.272123 | tig0021037:+96893 | Msa1388240:CDS |
| TTGATAGTGGAAAATAAAAT+TGG | 0.288695 | tig0021037:-96467 | None:intergenic |
| GACTCTCATATCTTGTTTAT+GGG | 0.294493 | tig0021037:+100907 | Msa1388240:CDS |
| ATCGATTCAGAGGAAATATA+TGG | 0.308151 | tig0021037:+98754 | Msa1388240:CDS |
| GATGAGAATGAGAAGTTAGT+TGG | 0.309923 | tig0021037:-96562 | None:intergenic |
| ATGTTAGGTCTGGGCATTCT+AGG | 0.312555 | tig0021037:+97067 | Msa1388240:CDS |
| AAAAGAACACGGTAGACTTC+TGG | 0.315797 | tig0021037:-98300 | None:intergenic |
| ATTCTGTCTGTCATTTCTAA+TGG | 0.317291 | tig0021037:-98819 | None:intergenic |
| ATTATTTGAAAATTCAATTT+GGG | 0.324240 | tig0021037:+101291 | Msa1388240:three_prime_UTR |
| GAGGGGTTGTGAAGATTAAT+GGG | 0.325613 | tig0021037:-96445 | None:intergenic |
| GGTAGACAAGAACTTAATAA+TGG | 0.332729 | tig0021037:-96859 | None:intergenic |
| ACATTGTAGATGAAGGGGTT+TGG | 0.336926 | tig0021037:-96392 | None:intergenic |
| GAGAGAGTTTATGGGTTGAT+TGG | 0.340372 | tig0021037:+97180 | Msa1388240:CDS |
| TGTACTCTACTTGTTAGAAC+TGG | 0.344400 | tig0021037:+101156 | Msa1388240:three_prime_UTR |
| TGATTAACAGCTGTTGTGGC+TGG | 0.347745 | tig0021037:-100873 | None:intergenic |
| CTCATCTATCCATAATTTAT+CGG | 0.347797 | tig0021037:-96902 | None:intergenic |
| TGCTCAAATTTGTACTTTGA+TGG | 0.350401 | tig0021037:-99615 | None:intergenic |
| AGTTTGAAAACAAGCTAAAC+TGG | 0.389097 | tig0021037:+98409 | Msa1388240:CDS |
| AGAGCTTGGACTTGGATTGC+AGG | 0.389569 | tig0021037:+98869 | Msa1388240:CDS |
| ATAATTTATCGGCATTGTTA+AGG | 0.390095 | tig0021037:-96891 | None:intergenic |
| ATCTCTGTTCCGGTTATCTA+AGG | 0.390223 | tig0021037:-101182 | None:intergenic |
| AAGTCCAAGCTCTATGTTCC+TGG | 0.390461 | tig0021037:-98859 | None:intergenic |
| GGCTGGCAATCCTCATCATC+TGG | 0.399583 | tig0021037:-98342 | None:intergenic |
| AAGCTCTATGTTCCTGGCTT+CGG | 0.400967 | tig0021037:-98853 | None:intergenic |
| GAACAAAGACGAAGCATGTT+AGG | 0.401968 | tig0021037:+97052 | Msa1388240:CDS |
| ATCCAAGTGCTCTCATAACT+TGG | 0.404958 | tig0021037:-98794 | None:intergenic |
| AATAAAACGGTGAAGCTGTT+TGG | 0.409551 | tig0021037:-100796 | None:intergenic |
| ATGTATCCTCATCTCTGTTC+CGG | 0.413416 | tig0021037:-101192 | None:intergenic |
| CAACAAAGTATCAAACTGTT+TGG | 0.422950 | tig0021037:-96998 | None:intergenic |
| TGGCTGGGTTTCTCCGTCTC+CGG | 0.431775 | tig0021037:-100857 | None:intergenic |
| AAGACGAAGCATGTTAGGTC+TGG | 0.432221 | tig0021037:+97057 | Msa1388240:CDS |
| AGGAACATAGAGCTTGGACT+TGG | 0.433949 | tig0021037:+98861 | Msa1388240:CDS |
| ATTTAGATGCTCCTGGGTTG+TGG | 0.437257 | tig0021037:+100715 | Msa1388240:CDS |
| AACTGGGCTCCTTAGATAAC+CGG | 0.438291 | tig0021037:+101173 | Msa1388240:three_prime_UTR |
| ATGAAGCATTTAGATGCTCC+TGG | 0.439342 | tig0021037:+100708 | Msa1388240:CDS |
| AGAGAGTTTATGGGTTGATT+GGG | 0.442300 | tig0021037:+97181 | Msa1388240:CDS |
| TGAACCATCAGACACATTAG+AGG | 0.448502 | tig0021037:+96963 | Msa1388240:CDS |
| ACTCTCCATGGCTCAGATCA+TGG | 0.450343 | tig0021037:+101232 | Msa1388240:three_prime_UTR |
| GTAGACAAGAACTTAATAAT+GGG | 0.452131 | tig0021037:-96858 | None:intergenic |
| CCCCAAGTTATGAGAGCACT+TGG | 0.454535 | tig0021037:+98792 | Msa1388240:CDS |
| AAACCGCTTATGAGCGCAAC+CGG | 0.458052 | tig0021037:+100838 | Msa1388240:CDS |
| GGGGCAATATGTGCTGGAAT+TGG | 0.460146 | tig0021037:+97101 | Msa1388240:CDS |
| GTTGTTTGCGCTCCCTAGGC+TGG | 0.460379 | tig0021037:-98359 | None:intergenic |
| TCAAGTTGTTTGCGCTCCCT+AGG | 0.462470 | tig0021037:-98363 | None:intergenic |
| GTTTGAAGATTGAATTGTGC+TGG | 0.462819 | tig0021037:-96496 | None:intergenic |
| GGAAGGAGAATTTGCCTAAG+TGG | 0.464839 | tig0021037:+97202 | Msa1388240:CDS |
| AAAGTATCAAACTGTTTGGC+AGG | 0.468742 | tig0021037:-96994 | None:intergenic |
| AGATTAATGGGATTGATTTG+TGG | 0.469630 | tig0021037:-96433 | None:intergenic |
| CCTCTGAATCGATGCATGCC+AGG | 0.470072 | tig0021037:-98744 | None:intergenic |
| ACTGCTTGTTCTACTCTCCA+TGG | 0.470450 | tig0021037:+101220 | Msa1388240:three_prime_UTR |
| TTTGAGAGATTAGAATATGT+TGG | 0.474238 | tig0021037:+99651 | Msa1388240:CDS |
| GATTAACAGCTGTTGTGGCT+GGG | 0.475840 | tig0021037:-100872 | None:intergenic |
| CGATGAGGGAGAGAGTTTAT+GGG | 0.478368 | tig0021037:+97172 | Msa1388240:CDS |
| AAAATTAGAACTTACTTGAC+AGG | 0.483319 | tig0021037:-97303 | None:intergenic |
| ATCTTATCCATATTATCATA+AGG | 0.484697 | tig0021037:-97258 | None:intergenic |
| TCCAAGTGCTCTCATAACTT+GGG | 0.485073 | tig0021037:-98793 | None:intergenic |
| TTGGATGGGGAAAGGAGAGA+AGG | 0.485624 | tig0021037:-96587 | None:intergenic |
| TGAGCAGATTCAGCCTAAAG+AGG | 0.487808 | tig0021037:+100971 | Msa1388240:CDS |
| GATGGGGAAAGGAGAGAAGG+AGG | 0.489046 | tig0021037:-96584 | None:intergenic |
| ATTAAGATTTGGATGGGGAA+AGG | 0.504291 | tig0021037:-96595 | None:intergenic |
| TTTCTTGGGGCAATATGTGC+TGG | 0.507263 | tig0021037:+97095 | Msa1388240:CDS |
| CTCGTAGCGAAACAAGCGCT+TGG | 0.514904 | tig0021037:+96931 | Msa1388240:CDS |
| TATCATCATATATAATAAAA+CGG | 0.517957 | tig0021037:-100809 | None:intergenic |
| GTGCTGGGAAATGTTGATAG+TGG | 0.520234 | tig0021037:-96480 | None:intergenic |
| AAACTAAGTGGATCAAATCA+TGG | 0.520710 | tig0021037:-101083 | None:intergenic |
| AGTTTATGGGTTGATTGGGA+AGG | 0.522441 | tig0021037:+97185 | Msa1388240:CDS |
| GTCTTTGTTCTCTCACACGA+AGG | 0.525988 | tig0021037:-97039 | None:intergenic |
| GCTGTTAATCAAGCTATTCA+CGG | 0.527856 | tig0021037:+100885 | Msa1388240:CDS |
| TAGTGGAAAATAAAATTGGA+GGG | 0.528126 | tig0021037:-96463 | None:intergenic |
| AGACGAAGCATGTTAGGTCT+GGG | 0.530011 | tig0021037:+97058 | Msa1388240:CDS |
| CTCTGAATCGATGCATGCCA+GGG | 0.532007 | tig0021037:-98743 | None:intergenic |
| ACACATGCTCTAAACAGCCT+TGG | 0.533681 | tig0021037:-98717 | None:intergenic |
| CTTATGAGCGCAACCGGAGA+CGG | 0.533815 | tig0021037:+100844 | Msa1388240:CDS |
| TTCCAGAAATTACCGAAGCC+AGG | 0.536155 | tig0021037:+98841 | Msa1388240:CDS |
| TCGATTCAGAGGAAATATAT+GGG | 0.538733 | tig0021037:+98755 | Msa1388240:CDS |
| ATTGTAGATGAAGGGGTTTG+GGG | 0.542616 | tig0021037:-96390 | None:intergenic |
| ACTCTCTCCCTCATCGGACC+AGG | 0.543075 | tig0021037:-97165 | None:intergenic |
| ATGATGAGGATTGCCAGCCT+AGG | 0.543609 | tig0021037:+98346 | Msa1388240:CDS |
| TTTGAAGATTGAATTGTGCT+GGG | 0.545348 | tig0021037:-96495 | None:intergenic |
| TTGCTCCATGATCTGAGCCA+TGG | 0.546436 | tig0021037:-101237 | None:intergenic |
| AAGTGGATCAAATCATGGTA+AGG | 0.547895 | tig0021037:-101078 | None:intergenic |
| AGCTTGATTAACAGCTGTTG+TGG | 0.551231 | tig0021037:-100877 | None:intergenic |
| TGATGAGGATTGCCAGCCTA+GGG | 0.552339 | tig0021037:+98347 | Msa1388240:CDS |
| TTTAGAATGTAACGTCTTGG+TGG | 0.553258 | tig0021037:-96766 | None:intergenic |
| ATAGTGGAAAATAAAATTGG+AGG | 0.555100 | tig0021037:-96464 | None:intergenic |
| TGAGTAAACAGAGCATCTGC+AGG | 0.557301 | tig0021037:-98693 | None:intergenic |
| ATCGGACCAGGCAATTCCCT+CGG | 0.558254 | tig0021037:-97153 | None:intergenic |
| CCATAAACTCTCTCCCTCAT+CGG | 0.567145 | tig0021037:-97171 | None:intergenic |
| TCTCCGGTTGCGCTCATAAG+CGG | 0.572925 | tig0021037:-100841 | None:intergenic |
| TTCTCTTGCAGCCACAACCC+AGG | 0.573873 | tig0021037:-100726 | None:intergenic |
| ATATGTGCTGGAATTGGCAT+TGG | 0.575967 | tig0021037:+97107 | Msa1388240:CDS |
| GAAGCCAGGAACATAGAGCT+TGG | 0.576371 | tig0021037:+98855 | Msa1388240:CDS |
| TGTAACTGCGAGAACGTGAA+GGG | 0.579147 | tig0021037:-96644 | None:intergenic |
| GGTAAGGAAAACCAAGGGGA+TGG | 0.579225 | tig0021037:-101062 | None:intergenic |
| ACATGGCAATAGAGTACTCT+CGG | 0.579660 | tig0021037:+101015 | Msa1388240:three_prime_UTR |
| CCTGGCATGCATCGATTCAG+AGG | 0.580371 | tig0021037:+98744 | Msa1388240:CDS |
| ATGCTCTGTTTACTCATCCA+AGG | 0.580822 | tig0021037:+98700 | Msa1388240:CDS |
| GTACTCTACTTGTTAGAACT+GGG | 0.583609 | tig0021037:+101157 | Msa1388240:three_prime_UTR |
| GGAATTGCCTGGTCCGATGA+GGG | 0.585185 | tig0021037:+97158 | Msa1388240:CDS |
| CAATCTTCAAACAACTACAA+TGG | 0.585823 | tig0021037:+96507 | Msa1388240:exon |
| TGTAGATGAAGGGGTTTGGG+GGG | 0.589369 | tig0021037:-96388 | None:intergenic |
| CGGAATGGATCCAGATGATG+AGG | 0.590285 | tig0021037:+98332 | Msa1388240:CDS |
| GCGCAAACAACTTGAAGATG+TGG | 0.590741 | tig0021037:+98371 | Msa1388240:CDS |
| TGAAGCATTTAGATGCTCCT+GGG | 0.592431 | tig0021037:+100709 | Msa1388240:CDS |
| TCATCCTCTAATGTGTCTGA+TGG | 0.595112 | tig0021037:-96967 | None:intergenic |
| TTGTAGATGAAGGGGTTTGG+GGG | 0.604922 | tig0021037:-96389 | None:intergenic |
| AGGTATCCGAGGGAATTGCC+TGG | 0.610907 | tig0021037:+97147 | Msa1388240:CDS |
| CCAAGTGCTCTCATAACTTG+GGG | 0.611381 | tig0021037:-98792 | None:intergenic |
| ATCATGGTAAGGAAAACCAA+GGG | 0.611834 | tig0021037:-101067 | None:intergenic |
| CTCACACGAAGGATGCTGAA+AGG | 0.613808 | tig0021037:-97028 | None:intergenic |
| TTGTAACTGCGAGAACGTGA+AGG | 0.616613 | tig0021037:-96645 | None:intergenic |
| GGGAATTGCCTGGTCCGATG+AGG | 0.628852 | tig0021037:+97157 | Msa1388240:CDS |
| ATAATATGGATAAGATTGTG+AGG | 0.636146 | tig0021037:+97265 | Msa1388240:CDS |
| AGTGGAAAATAAAATTGGAG+GGG | 0.636810 | tig0021037:-96462 | None:intergenic |
| GCATTGTTAAGGCGCGACGA+AGG | 0.641980 | tig0021037:-96880 | None:intergenic |
| GTAAACAGAGCATCTGCAGG+AGG | 0.645297 | tig0021037:-98690 | None:intergenic |
| CTAGCAGCTTTAATCCACTT+AGG | 0.646479 | tig0021037:-97216 | None:intergenic |
| AATCTCTCAAAGCAAAATCG+AGG | 0.653019 | tig0021037:-99639 | None:intergenic |
| TCTGAATCGATGCATGCCAG+GGG | 0.656480 | tig0021037:-98742 | None:intergenic |
| AATCATGGTAAGGAAAACCA+AGG | 0.657108 | tig0021037:-101068 | None:intergenic |
| AGATAACCGGAACAGAGATG+AGG | 0.667397 | tig0021037:+101186 | Msa1388240:three_prime_UTR |
| GTAACTGCGAGAACGTGAAG+GGG | 0.674979 | tig0021037:-96643 | None:intergenic |
| AGTTCTTTAAGAAGTCGTTG+AGG | 0.689037 | tig0021037:-96703 | None:intergenic |
| ATTGTGAGGAGAGATAGAGA+AGG | 0.699451 | tig0021037:+97279 | Msa1388240:CDS |
| CTGAATCGATGCATGCCAGG+GGG | 0.708978 | tig0021037:-98741 | None:intergenic |
| TAACTGCGAGAACGTGAAGG+GGG | 0.713161 | tig0021037:-96642 | None:intergenic |
| TCATGGTAAGGAAAACCAAG+GGG | 0.715394 | tig0021037:-101066 | None:intergenic |
| AATATGAGACAAGAATGACA+TGG | 0.759010 | tig0021037:+100998 | Msa1388240:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATAATTTTGATATTATGT+TGG | + | tig0021037:97345-97364 | Msa1388240:intron | 10.0% |
| !! | AATTATGTTAATATTTGTAT+TGG | + | tig0021037:97796-97815 | Msa1388240:intron | 10.0% |
| !!! | TGTATTAATAGTTTAAAATT+AGG | + | tig0021037:99378-99397 | Msa1388240:intron | 10.0% |
| !! | TATCATCATATATAATAAAA+CGG | - | tig0021037:100812-100831 | None:intergenic | 10.0% |
| !! | ATTATTTGAAAATTCAATTT+GGG | + | tig0021037:101291-101310 | Msa1388240:three_prime_UTR | 10.0% |
| !!! | TGTTGTATTCTTTTTTTTTT+TGG | + | tig0021037:97977-97996 | Msa1388240:intron | 15.0% |
| !!! | TTTTTATTTTCTTAAGGATT+TGG | + | tig0021037:100665-100684 | Msa1388240:intron | 15.0% |
| !! | GATTATTTGAAAATTCAATT+TGG | + | tig0021037:101290-101309 | Msa1388240:three_prime_UTR | 15.0% |
| !!! | TTGATAGTGGAAAATAAAAT+TGG | - | tig0021037:96470-96489 | None:intergenic | 20.0% |
| !!! | TTTTTGATTAAGATTTGGAT+GGG | - | tig0021037:96604-96623 | None:intergenic | 20.0% |
| !! | GATATTTCCTTATGATAATA+TGG | + | tig0021037:97251-97270 | Msa1388240:CDS | 20.0% |
| !! | ATCTTATCCATATTATCATA+AGG | - | tig0021037:97261-97280 | None:intergenic | 20.0% |
| !! | TTCACATAATGAATGATATT+TGG | + | tig0021037:97820-97839 | Msa1388240:intron | 20.0% |
| !! | AAAGAATACAACAGATATAA+AGG | - | tig0021037:97970-97989 | None:intergenic | 20.0% |
| !!! | CAAGTTTACTTCTAAAAAAA+GGG | - | tig0021037:99476-99495 | None:intergenic | 20.0% |
| !!! | ACAAGTTTACTTCTAAAAAA+AGG | - | tig0021037:99477-99496 | None:intergenic | 20.0% |
| !!! | ACAACGTTTTTATTTTCTTA+AGG | + | tig0021037:100659-100678 | Msa1388240:intron | 20.0% |
| !! | TAAATAACCTAAAAACTAAG+TGG | - | tig0021037:101098-101117 | None:intergenic | 20.0% |
| !!! | TGATTTGTGGATTTTTGTAT+TGG | - | tig0021037:96423-96442 | None:intergenic | 25.0% |
| ! | TAGTGGAAAATAAAATTGGA+GGG | - | tig0021037:96466-96485 | None:intergenic | 25.0% |
| !! | ATAGTGGAAAATAAAATTGG+AGG | - | tig0021037:96467-96486 | None:intergenic | 25.0% |
| !!! | TTTTGATTAAGATTTGGATG+GGG | - | tig0021037:96603-96622 | None:intergenic | 25.0% |
| !!! | GTTTTTGATTAAGATTTGGA+TGG | - | tig0021037:96605-96624 | None:intergenic | 25.0% |
| !!! | TGGTGTTTTTGATTAAGATT+TGG | - | tig0021037:96609-96628 | None:intergenic | 25.0% |
| !!! | GTTGAGGATTGTTATTTTTA+GGG | - | tig0021037:96690-96709 | None:intergenic | 25.0% |
| ! | GTAGACAAGAACTTAATAAT+GGG | - | tig0021037:96861-96880 | None:intergenic | 25.0% |
| ! | ATAATTTATCGGCATTGTTA+AGG | - | tig0021037:96894-96913 | None:intergenic | 25.0% |
| ! | TTAACAATGCCGATAAATTA+TGG | + | tig0021037:96893-96912 | Msa1388240:CDS | 25.0% |
| ! | CTCATCTATCCATAATTTAT+CGG | - | tig0021037:96905-96924 | None:intergenic | 25.0% |
| !! | GTTTGATACTTTGTTGTATT+TGG | + | tig0021037:97005-97024 | Msa1388240:CDS | 25.0% |
| ! | ATAATATGGATAAGATTGTG+AGG | + | tig0021037:97265-97284 | Msa1388240:CDS | 25.0% |
| ! | AAAATTAGAACTTACTTGAC+AGG | - | tig0021037:97306-97325 | None:intergenic | 25.0% |
| ! | TCAATCAAACTTTACTATGT+AGG | + | tig0021037:97448-97467 | Msa1388240:intron | 25.0% |
| ! | TGAGAAGAATATAACTAACT+CGG | - | tig0021037:97511-97530 | None:intergenic | 25.0% |
| !!! | TGAATTGATTTGTTAGGATA+AGG | + | tig0021037:97608-97627 | Msa1388240:intron | 25.0% |
| ! | GTTTATATCACTATAACTCA+TGG | - | tig0021037:97913-97932 | None:intergenic | 25.0% |
| ! | CAAATTGATTAACAGCATAT+GGG | - | tig0021037:98133-98152 | None:intergenic | 25.0% |
| ! | ACAAATTGATTAACAGCATA+TGG | - | tig0021037:98134-98153 | None:intergenic | 25.0% |
| ! | AATATAGAACATTCGATTGT+AGG | - | tig0021037:98636-98655 | None:intergenic | 25.0% |
| ! | AAATGTGAAAGTAGAATGAA+AGG | - | tig0021037:98909-98928 | None:intergenic | 25.0% |
| ! | TTCTATTTATTATCCTTCTC+AGG | + | tig0021037:99033-99052 | Msa1388240:intron | 25.0% |
| !!! | TTGATAATTCTGTTTTTACC+CGG | + | tig0021037:99210-99229 | Msa1388240:intron | 25.0% |
| ! | ATTTACATAAACAGCTAAAC+CGG | - | tig0021037:99232-99251 | None:intergenic | 25.0% |
| !!! | TATTCACTTTTCTATTGAAG+TGG | + | tig0021037:99509-99528 | Msa1388240:intron | 25.0% |
| !!! | ATTCACTTTTCTATTGAAGT+GGG | + | tig0021037:99510-99529 | Msa1388240:intron | 25.0% |
| ! | TTTGAGAGATTAGAATATGT+TGG | + | tig0021037:99651-99670 | Msa1388240:CDS | 25.0% |
| ! | GAAGACTCTAATTTCATTAA+TGG | + | tig0021037:99719-99738 | Msa1388240:intron | 25.0% |
| ! | TTATCGCATTTCTGATAATA+GGG | - | tig0021037:99769-99788 | None:intergenic | 25.0% |
| ! | TTTATCGCATTTCTGATAAT+AGG | - | tig0021037:99770-99789 | None:intergenic | 25.0% |
| ! | ATCTTGAATAGAAAAAAGTG+AGG | + | tig0021037:99813-99832 | Msa1388240:intron | 25.0% |
| !! | CATTATTCTGAAAAATAGCT+TGG | + | tig0021037:99878-99897 | Msa1388240:intron | 25.0% |
| !!! | ATTTTTCACATCTAAGATCA+GGG | - | tig0021037:99997-100016 | None:intergenic | 25.0% |
| !!! | AATTTTTCACATCTAAGATC+AGG | - | tig0021037:99998-100017 | None:intergenic | 25.0% |
| !!! | CATGGAAGCTTTTTTTTTTT+TGG | - | tig0021037:100037-100056 | None:intergenic | 25.0% |
| ! | AATTGTTTGAAAGTTACTGA+AGG | + | tig0021037:100204-100223 | Msa1388240:intron | 25.0% |
| !!! | TTCTGAAATATAAACAAGAG+AGG | + | tig0021037:100293-100312 | Msa1388240:intron | 25.0% |
| ! | AAAAAAGATGATGCTAACAA+GGG | + | tig0021037:100395-100414 | Msa1388240:intron | 25.0% |
| !! | ATTCTTCTGAACAAATTTTG+TGG | + | tig0021037:100759-100778 | Msa1388240:CDS | 25.0% |
| !!! | ATTTGATCCACTTAGTTTTT+AGG | + | tig0021037:101088-101107 | Msa1388240:three_prime_UTR | 25.0% |
| ! | TTTTGACATTGTAGATGAAG+GGG | - | tig0021037:96400-96419 | None:intergenic | 30.0% |
| !! | GTTTTGACATTGTAGATGAA+GGG | - | tig0021037:96401-96420 | None:intergenic | 30.0% |
| !! | AGATTAATGGGATTGATTTG+TGG | - | tig0021037:96436-96455 | None:intergenic | 30.0% |
| AGTGGAAAATAAAATTGGAG+GGG | - | tig0021037:96465-96484 | None:intergenic | 30.0% | |
| TTTGAAGATTGAATTGTGCT+GGG | - | tig0021037:96498-96517 | None:intergenic | 30.0% | |
| CAATCTTCAAACAACTACAA+TGG | + | tig0021037:96507-96526 | Msa1388240:exon | 30.0% | |
| !!! | ATGAGAAGTTAGTTGGTTTT+GGG | - | tig0021037:96558-96577 | None:intergenic | 30.0% |
| !! | AATGAGAAGTTAGTTGGTTT+TGG | - | tig0021037:96559-96578 | None:intergenic | 30.0% |
| !! | TTTTAGGGAAGTCTTTTGTT+GGG | - | tig0021037:96675-96694 | None:intergenic | 30.0% |
| !! | TTTTTAGGGAAGTCTTTTGT+TGG | - | tig0021037:96676-96695 | None:intergenic | 30.0% |
| !!! | CGTTGAGGATTGTTATTTTT+AGG | - | tig0021037:96691-96710 | None:intergenic | 30.0% |
| !!! | TTGGTGGTGATTTTGATTTT+GGG | - | tig0021037:96753-96772 | None:intergenic | 30.0% |
| !! | AATGATTTTAATGAGAGCTG+TGG | - | tig0021037:96838-96857 | None:intergenic | 30.0% |
| GGTAGACAAGAACTTAATAA+TGG | - | tig0021037:96862-96881 | None:intergenic | 30.0% | |
| ! | CAACAAAGTATCAAACTGTT+TGG | - | tig0021037:97001-97020 | None:intergenic | 30.0% |
| !!! | CATTCTAGGTTGTTTTTCTT+GGG | + | tig0021037:97081-97100 | Msa1388240:CDS | 30.0% |
| !!! | ATTCTAGGTTGTTTTTCTTG+GGG | + | tig0021037:97082-97101 | Msa1388240:CDS | 30.0% |
| ACATTGCGTAGTTTATTTGA+TGG | + | tig0021037:97530-97549 | Msa1388240:intron | 30.0% | |
| CATTGCGTAGTTTATTTGAT+GGG | + | tig0021037:97531-97550 | Msa1388240:intron | 30.0% | |
| ATTGCGTAGTTTATTTGATG+GGG | + | tig0021037:97532-97551 | Msa1388240:intron | 30.0% | |
| TTAGTTAGATATCATGTGAC+CGG | + | tig0021037:97555-97574 | Msa1388240:intron | 30.0% | |
| GACATCAAATGATCATAAAC+CGG | - | tig0021037:97577-97596 | None:intergenic | 30.0% | |
| CCTAACAAATCAATTCAGTT+TGG | - | tig0021037:97605-97624 | None:intergenic | 30.0% | |
| !! | CCAAACTGAATTGATTTGTT+AGG | + | tig0021037:97602-97621 | Msa1388240:intron | 30.0% |
| ! | CATAAACTTAAAAGTGCACA+AGG | - | tig0021037:97854-97873 | None:intergenic | 30.0% |
| ! | TTTGTTGCTATCTCATTTTC+AGG | + | tig0021037:98009-98028 | Msa1388240:intron | 30.0% |
| ACCATCTTATATGATTGAGT+TGG | + | tig0021037:98160-98179 | Msa1388240:intron | 30.0% | |
| ACCAACTCAATCATATAAGA+TGG | - | tig0021037:98164-98183 | None:intergenic | 30.0% | |
| !! | CACATTTGTTATTCTATCGT+AGG | + | tig0021037:98229-98248 | Msa1388240:intron | 30.0% |
| !! | TTTGTTATTCTATCGTAGGT+CGG | + | tig0021037:98233-98252 | Msa1388240:intron | 30.0% |
| AGTTTGAAAACAAGCTAAAC+TGG | + | tig0021037:98409-98428 | Msa1388240:CDS | 30.0% | |
| ! | GCAAGATATTGTTGCTTATA+AGG | + | tig0021037:98431-98450 | Msa1388240:CDS | 30.0% |
| CAATCGAATGTTCTATATTG+AGG | + | tig0021037:98637-98656 | Msa1388240:intron | 30.0% | |
| ! | ATCGATTCAGAGGAAATATA+TGG | + | tig0021037:98754-98773 | Msa1388240:CDS | 30.0% |
| TCGATTCAGAGGAAATATAT+GGG | + | tig0021037:98755-98774 | Msa1388240:CDS | 30.0% | |
| ! | ATTCTGTCTGTCATTTCTAA+TGG | - | tig0021037:98822-98841 | None:intergenic | 30.0% |
| ! | AGATGTTTAGTGATAGTGAT+TGG | + | tig0021037:99077-99096 | Msa1388240:intron | 30.0% |
| !! | AAACTTGAAAGTATCACTGT+AGG | - | tig0021037:99154-99173 | None:intergenic | 30.0% |
| ! | CAAGTTTTTGTGTTGAATTC+AGG | + | tig0021037:99167-99186 | Msa1388240:intron | 30.0% |
| TTTACATAAACAGCTAAACC+GGG | - | tig0021037:99231-99250 | None:intergenic | 30.0% | |
| GGTTTAGCTGTTTATGTAAA+TGG | + | tig0021037:99231-99250 | Msa1388240:intron | 30.0% | |
| ! | GTTTATGTAATTTTCTCACC+TGG | + | tig0021037:99253-99272 | Msa1388240:intron | 30.0% |
| TGCTCAAATTTGTACTTTGA+TGG | - | tig0021037:99618-99637 | None:intergenic | 30.0% | |
| ATATGTTGGAAAAACGATAC+AGG | + | tig0021037:99665-99684 | Msa1388240:CDS | 30.0% | |
| ATTTCTGATAATAGGGAAAG+GGG | - | tig0021037:99762-99781 | None:intergenic | 30.0% | |
| CATTTCTGATAATAGGGAAA+GGG | - | tig0021037:99763-99782 | None:intergenic | 30.0% | |
| GGATAAAAATAGATTGCAAC+AGG | + | tig0021037:99899-99918 | Msa1388240:intron | 30.0% | |
| ! | TCTTTCTCTTAGGTTTTTCA+TGG | - | tig0021037:100055-100074 | None:intergenic | 30.0% |
| TGAAAAACCTAAGAGAAAGA+TGG | + | tig0021037:100055-100074 | Msa1388240:intron | 30.0% | |
| GAAAAACCTAAGAGAAAGAT+GGG | + | tig0021037:100056-100075 | Msa1388240:intron | 30.0% | |
| TGAAATATAAACAAGAGAGG+TGG | + | tig0021037:100296-100315 | Msa1388240:intron | 30.0% | |
| GAAATATAAACAAGAGAGGT+GGG | + | tig0021037:100297-100316 | Msa1388240:intron | 30.0% | |
| CAAAATCACAGACACATATT+AGG | - | tig0021037:100365-100384 | None:intergenic | 30.0% | |
| CAAAAAAGATGATGCTAACA+AGG | + | tig0021037:100394-100413 | Msa1388240:intron | 30.0% | |
| AAAAAGATGATGCTAACAAG+GGG | + | tig0021037:100396-100415 | Msa1388240:intron | 30.0% | |
| ! | TACAAATTTTGTGCTTCCAA+CGG | - | tig0021037:100512-100531 | None:intergenic | 30.0% |
| !!! | TTTTCTTAAGGATTTGGTGA+TGG | + | tig0021037:100671-100690 | Msa1388240:intron | 30.0% |
| ! | AATTTTGTGGAAGATACTTG+AGG | + | tig0021037:100772-100791 | Msa1388240:CDS | 30.0% |
| ! | ATTTTGTGGAAGATACTTGA+GGG | + | tig0021037:100773-100792 | Msa1388240:CDS | 30.0% |
| ! | GACTCTCATATCTTGTTTAT+GGG | + | tig0021037:100907-100926 | Msa1388240:CDS | 30.0% |
| TCTCATATTTAGACCTCTTT+AGG | - | tig0021037:100987-101006 | None:intergenic | 30.0% | |
| AATATGAGACAAGAATGACA+TGG | + | tig0021037:100998-101017 | Msa1388240:exon | 30.0% | |
| AAACTAAGTGGATCAAATCA+TGG | - | tig0021037:101086-101105 | None:intergenic | 30.0% | |
| !! | GGTTTTGACATTGTAGATGA+AGG | - | tig0021037:96402-96421 | None:intergenic | 35.0% |
| GTTTGAAGATTGAATTGTGC+TGG | - | tig0021037:96499-96518 | None:intergenic | 35.0% | |
| !!! | TGAGAAGTTAGTTGGTTTTG+GGG | - | tig0021037:96557-96576 | None:intergenic | 35.0% |
| GATGAGAATGAGAAGTTAGT+TGG | - | tig0021037:96565-96584 | None:intergenic | 35.0% | |
| ATTAAGATTTGGATGGGGAA+AGG | - | tig0021037:96598-96617 | None:intergenic | 35.0% | |
| ! | AGTTCTTTAAGAAGTCGTTG+AGG | - | tig0021037:96706-96725 | None:intergenic | 35.0% |
| !!! | CTTGGTGGTGATTTTGATTT+TGG | - | tig0021037:96754-96773 | None:intergenic | 35.0% |
| ! | TTTAGAATGTAACGTCTTGG+TGG | - | tig0021037:96769-96788 | None:intergenic | 35.0% |
| !!! | GGTTTTAGAATGTAACGTCT+TGG | - | tig0021037:96772-96791 | None:intergenic | 35.0% |
| !!! | AGTTTTTTGTCATCTAGTGG+GGG | - | tig0021037:96793-96812 | None:intergenic | 35.0% |
| !!! | GAGTTTTTTGTCATCTAGTG+GGG | - | tig0021037:96794-96813 | None:intergenic | 35.0% |
| !!! | CGAGTTTTTTGTCATCTAGT+GGG | - | tig0021037:96795-96814 | None:intergenic | 35.0% |
| ! | AAAGTATCAAACTGTTTGGC+AGG | - | tig0021037:96997-97016 | None:intergenic | 35.0% |
| !!! | GCATTCTAGGTTGTTTTTCT+TGG | + | tig0021037:97080-97099 | Msa1388240:CDS | 35.0% |
| !! | AGAGAGTTTATGGGTTGATT+GGG | + | tig0021037:97181-97200 | Msa1388240:CDS | 35.0% |
| ! | AGTTTTCTGTCTATGTCTCT+TGG | + | tig0021037:97699-97718 | Msa1388240:intron | 35.0% |
| TGTCTATGTCTCTTGGTATT+TGG | + | tig0021037:97706-97725 | Msa1388240:intron | 35.0% | |
| ATAATGTGTGATATGTGCTC+AGG | + | tig0021037:97744-97763 | Msa1388240:intron | 35.0% | |
| TTACTGTCTAAACAGGACAT+AGG | + | tig0021037:98075-98094 | Msa1388240:intron | 35.0% | |
| CGAACACTTCAAAAAGAACA+CGG | - | tig0021037:98314-98333 | None:intergenic | 35.0% | |
| !!! | CGTGTTCTTTTTGAAGTGTT+CGG | + | tig0021037:98312-98331 | Msa1388240:CDS | 35.0% |
| !!! | TCTTTTTGAAGTGTTCGGAA+TGG | + | tig0021037:98317-98336 | Msa1388240:CDS | 35.0% |
| GTGCAGTTGCTCATAATAAA+TGG | - | tig0021037:98519-98538 | None:intergenic | 35.0% | |
| ! | ACTTTCACATTTTCCCTTTC+TGG | + | tig0021037:98917-98936 | Msa1388240:intron | 35.0% |
| ! | GTGCTTTAAATAGCCAGAAA+GGG | - | tig0021037:98933-98952 | None:intergenic | 35.0% |
| ! | TGTGCTTTAAATAGCCAGAA+AGG | - | tig0021037:98934-98953 | None:intergenic | 35.0% |
| ! | GGCTATTTAAAGCACAAATC+TGG | + | tig0021037:98938-98957 | Msa1388240:intron | 35.0% |
| ATTTAACATGAAGCCTGAGA+AGG | - | tig0021037:99049-99068 | None:intergenic | 35.0% | |
| ! | TTTAGTGATAGTGATTGGCA+AGG | + | tig0021037:99082-99101 | Msa1388240:intron | 35.0% |
| ! | TTAGTGATAGTGATTGGCAA+GGG | + | tig0021037:99083-99102 | Msa1388240:intron | 35.0% |
| TGGTTTAGCTGTTTAGCAAT+CGG | + | tig0021037:99273-99292 | Msa1388240:intron | 35.0% | |
| AAACTTGTCTAGTGCATATG+CGG | + | tig0021037:99429-99448 | Msa1388240:intron | 35.0% | |
| AATCTCTCAAAGCAAAATCG+AGG | - | tig0021037:99642-99661 | None:intergenic | 35.0% | |
| TTCGTTTGTGGAAATTCTTC+AGG | + | tig0021037:99697-99716 | Msa1388240:intron | 35.0% | |
| GCATTTCTGATAATAGGGAA+AGG | - | tig0021037:99764-99783 | None:intergenic | 35.0% | |
| GAATAGAAAAAAGTGAGGTG+AGG | + | tig0021037:99818-99837 | Msa1388240:intron | 35.0% | |
| CGGAATTTCCACTTAGATAT+GGG | + | tig0021037:100091-100110 | Msa1388240:intron | 35.0% | |
| ! | TTTTCATGCCCATATCTAAG+TGG | - | tig0021037:100102-100121 | None:intergenic | 35.0% |
| GAATAGCTGCAGTACAATTA+CGG | + | tig0021037:100146-100165 | Msa1388240:intron | 35.0% | |
| AATAGCTGCAGTACAATTAC+GGG | + | tig0021037:100147-100166 | Msa1388240:intron | 35.0% | |
| TTTGAAAGTTACTGAAGGTG+AGG | + | tig0021037:100209-100228 | Msa1388240:intron | 35.0% | |
| AATAAAACGGTGAAGCTGTT+TGG | - | tig0021037:100799-100818 | None:intergenic | 35.0% | |
| GCTGTTAATCAAGCTATTCA+CGG | + | tig0021037:100885-100904 | Msa1388240:CDS | 35.0% | |
| ! | GGACTCTCATATCTTGTTTA+TGG | + | tig0021037:100906-100925 | Msa1388240:CDS | 35.0% |
| CAAGGGGATGGAAAAATAAA+AGG | - | tig0021037:101053-101072 | None:intergenic | 35.0% | |
| !!! | CTTTTATTTTTCCATCCCCT+TGG | + | tig0021037:101051-101070 | Msa1388240:three_prime_UTR | 35.0% |
| ATCATGGTAAGGAAAACCAA+GGG | - | tig0021037:101070-101089 | None:intergenic | 35.0% | |
| AATCATGGTAAGGAAAACCA+AGG | - | tig0021037:101071-101090 | None:intergenic | 35.0% | |
| AAGTGGATCAAATCATGGTA+AGG | - | tig0021037:101081-101100 | None:intergenic | 35.0% | |
| ! | TGTACTCTACTTGTTAGAAC+TGG | + | tig0021037:101156-101175 | Msa1388240:three_prime_UTR | 35.0% |
| ! | GTACTCTACTTGTTAGAACT+GGG | + | tig0021037:101157-101176 | Msa1388240:three_prime_UTR | 35.0% |
| ATTGTAGATGAAGGGGTTTG+GGG | - | tig0021037:96393-96412 | None:intergenic | 40.0% | |
| CATTGTAGATGAAGGGGTTT+GGG | - | tig0021037:96394-96413 | None:intergenic | 40.0% | |
| ACATTGTAGATGAAGGGGTT+TGG | - | tig0021037:96395-96414 | None:intergenic | 40.0% | |
| GAGGGGTTGTGAAGATTAAT+GGG | - | tig0021037:96448-96467 | None:intergenic | 40.0% | |
| !! | TTTTGGGGAGAGTGAAAAAG+AGG | - | tig0021037:96542-96561 | None:intergenic | 40.0% |
| !!! | GCGAGTTTTTTGTCATCTAG+TGG | - | tig0021037:96796-96815 | None:intergenic | 40.0% |
| TGAACCATCAGACACATTAG+AGG | + | tig0021037:96963-96982 | Msa1388240:CDS | 40.0% | |
| TCATCCTCTAATGTGTCTGA+TGG | - | tig0021037:96970-96989 | None:intergenic | 40.0% | |
| GAACAAAGACGAAGCATGTT+AGG | + | tig0021037:97052-97071 | Msa1388240:CDS | 40.0% | |
| ATATGTGCTGGAATTGGCAT+TGG | + | tig0021037:97107-97126 | Msa1388240:CDS | 40.0% | |
| ! | TGGCTGAATTCTTTTTGCAG+AGG | + | tig0021037:97127-97146 | Msa1388240:CDS | 40.0% |
| !! | GAGAGAGTTTATGGGTTGAT+TGG | + | tig0021037:97180-97199 | Msa1388240:CDS | 40.0% |
| !! | AGTTTATGGGTTGATTGGGA+AGG | + | tig0021037:97185-97204 | Msa1388240:CDS | 40.0% |
| ! | CTAGCAGCTTTAATCCACTT+AGG | - | tig0021037:97219-97238 | None:intergenic | 40.0% |
| ATTGTGAGGAGAGATAGAGA+AGG | + | tig0021037:97279-97298 | Msa1388240:CDS | 40.0% | |
| ! | AGCTAGCTTACTGTCTAAAC+AGG | + | tig0021037:98068-98087 | Msa1388240:intron | 40.0% |
| ! | TCTATCGTAGGTCGGTATTT+TGG | + | tig0021037:98241-98260 | Msa1388240:intron | 40.0% |
| ! | CTATCGTAGGTCGGTATTTT+GGG | + | tig0021037:98242-98261 | Msa1388240:intron | 40.0% |
| !!! | TCGGTATTTTGGGCTTTGTT+TGG | + | tig0021037:98252-98271 | Msa1388240:CDS | 40.0% |
| !!! | CGGTATTTTGGGCTTTGTTT+GGG | + | tig0021037:98253-98272 | Msa1388240:CDS | 40.0% |
| !!! | GGTATTTTGGGCTTTGTTTG+GGG | + | tig0021037:98254-98273 | Msa1388240:CDS | 40.0% |
| !! | GGGGCAATCTATCTTTGTTT+TGG | + | tig0021037:98273-98292 | Msa1388240:CDS | 40.0% |
| AAAAGAACACGGTAGACTTC+TGG | - | tig0021037:98303-98322 | None:intergenic | 40.0% | |
| ATGCTCTGTTTACTCATCCA+AGG | + | tig0021037:98700-98719 | Msa1388240:CDS | 40.0% | |
| TCCAAGTGCTCTCATAACTT+GGG | - | tig0021037:98796-98815 | None:intergenic | 40.0% | |
| ATCCAAGTGCTCTCATAACT+TGG | - | tig0021037:98797-98816 | None:intergenic | 40.0% | |
| GTATCACTGTAGGTGTAACA+AGG | - | tig0021037:99144-99163 | None:intergenic | 40.0% | |
| GATTGCTAAACAGCTAAACC+AGG | - | tig0021037:99274-99293 | None:intergenic | 40.0% | |
| TCATGTAGTGAACTGCACAA+AGG | - | tig0021037:99316-99335 | None:intergenic | 40.0% | |
| !! | TGAGTTGAGAGGTTCTAAAG+CGG | - | tig0021037:99349-99368 | None:intergenic | 40.0% |
| !! | CACTTAGAACTTGAGTTGAG+AGG | - | tig0021037:99360-99379 | None:intergenic | 40.0% |
| AACTTGTCTAGTGCATATGC+GGG | + | tig0021037:99430-99449 | Msa1388240:intron | 40.0% | |
| ! | CTTCTAAAAAAAGGGCAACC+CGG | - | tig0021037:99468-99487 | None:intergenic | 40.0% |
| ! | AGGTACTGTTCTTTCGTTTG+TGG | + | tig0021037:99685-99704 | Msa1388240:intron | 40.0% |
| AAAAAAGTGAGGTGAGGAGA+CGG | + | tig0021037:99824-99843 | Msa1388240:intron | 40.0% | |
| AGATCAGGGTCAGGAAATAA+AGG | - | tig0021037:99983-100002 | None:intergenic | 40.0% | |
| GCGGAATTTCCACTTAGATA+TGG | + | tig0021037:100090-100109 | Msa1388240:intron | 40.0% | |
| TGCATCAAGCCTCAAAAACA+TGG | - | tig0021037:100326-100345 | None:intergenic | 40.0% | |
| ! | ATGAAGCATTTAGATGCTCC+TGG | + | tig0021037:100708-100727 | Msa1388240:CDS | 40.0% |
| ! | TGAAGCATTTAGATGCTCCT+GGG | + | tig0021037:100709-100728 | Msa1388240:CDS | 40.0% |
| AGCTTGATTAACAGCTGTTG+TGG | - | tig0021037:100880-100899 | None:intergenic | 40.0% | |
| ! | ACATGGCAATAGAGTACTCT+CGG | + | tig0021037:101015-101034 | Msa1388240:three_prime_UTR | 40.0% |
| TCATGGTAAGGAAAACCAAG+GGG | - | tig0021037:101069-101088 | None:intergenic | 40.0% | |
| ATCTCTGTTCCGGTTATCTA+AGG | - | tig0021037:101185-101204 | None:intergenic | 40.0% | |
| ATGTATCCTCATCTCTGTTC+CGG | - | tig0021037:101195-101214 | None:intergenic | 40.0% | |
| TTGTAGATGAAGGGGTTTGG+GGG | - | tig0021037:96392-96411 | None:intergenic | 45.0% | |
| GGAGGGGTTGTGAAGATTAA+TGG | - | tig0021037:96449-96468 | None:intergenic | 45.0% | |
| ! | GTGCTGGGAAATGTTGATAG+TGG | - | tig0021037:96483-96502 | None:intergenic | 45.0% |
| TGTAACTGCGAGAACGTGAA+GGG | - | tig0021037:96647-96666 | None:intergenic | 45.0% | |
| TTGTAACTGCGAGAACGTGA+AGG | - | tig0021037:96648-96667 | None:intergenic | 45.0% | |
| GTCTTTGTTCTCTCACACGA+AGG | - | tig0021037:97042-97061 | None:intergenic | 45.0% | |
| AAGACGAAGCATGTTAGGTC+TGG | + | tig0021037:97057-97076 | Msa1388240:CDS | 45.0% | |
| AGACGAAGCATGTTAGGTCT+GGG | + | tig0021037:97058-97077 | Msa1388240:CDS | 45.0% | |
| ATGTTAGGTCTGGGCATTCT+AGG | + | tig0021037:97067-97086 | Msa1388240:CDS | 45.0% | |
| TTTCTTGGGGCAATATGTGC+TGG | + | tig0021037:97095-97114 | Msa1388240:CDS | 45.0% | |
| !!! | TCTTTTTGCAGAGGTATCCG+AGG | + | tig0021037:97136-97155 | Msa1388240:CDS | 45.0% |
| !!! | CTTTTTGCAGAGGTATCCGA+GGG | + | tig0021037:97137-97156 | Msa1388240:CDS | 45.0% |
| CCATAAACTCTCTCCCTCAT+CGG | - | tig0021037:97174-97193 | None:intergenic | 45.0% | |
| CGATGAGGGAGAGAGTTTAT+GGG | + | tig0021037:97172-97191 | Msa1388240:CDS | 45.0% | |
| GGAAGGAGAATTTGCCTAAG+TGG | + | tig0021037:97202-97221 | Msa1388240:CDS | 45.0% | |
| GCGCAAACAACTTGAAGATG+TGG | + | tig0021037:98371-98390 | Msa1388240:CDS | 45.0% | |
| ! | TGAGTAAACAGAGCATCTGC+AGG | - | tig0021037:98696-98715 | None:intergenic | 45.0% |
| ! | ACACATGCTCTAAACAGCCT+TGG | - | tig0021037:98720-98739 | None:intergenic | 45.0% |
| CCAAGTGCTCTCATAACTTG+GGG | - | tig0021037:98795-98814 | None:intergenic | 45.0% | |
| TTCCAGAAATTACCGAAGCC+AGG | + | tig0021037:98841-98860 | Msa1388240:CDS | 45.0% | |
| TTCCTGGCTTCGGTAATTTC+TGG | - | tig0021037:98846-98865 | None:intergenic | 45.0% | |
| AAGCTCTATGTTCCTGGCTT+CGG | - | tig0021037:98856-98875 | None:intergenic | 45.0% | |
| AAGTCCAAGCTCTATGTTCC+TGG | - | tig0021037:98862-98881 | None:intergenic | 45.0% | |
| AGGAACATAGAGCTTGGACT+TGG | + | tig0021037:98861-98880 | Msa1388240:CDS | 45.0% | |
| GCAGAAAACAAAGCTGCAAG+TGG | - | tig0021037:99593-99612 | None:intergenic | 45.0% | |
| AAAAAGTGAGGTGAGGAGAC+GGG | + | tig0021037:99825-99844 | Msa1388240:intron | 45.0% | |
| ! | TCACATCTAAGATCAGGGTC+AGG | - | tig0021037:99992-100011 | None:intergenic | 45.0% |
| AACCTAAGAGAAAGATGGGC+AGG | + | tig0021037:100060-100079 | Msa1388240:intron | 45.0% | |
| ACCTAAGAGAAAGATGGGCA+GGG | + | tig0021037:100061-100080 | Msa1388240:intron | 45.0% | |
| AAGATGGGCAGGGAATTATG+CGG | + | tig0021037:100071-100090 | Msa1388240:intron | 45.0% | |
| CTGCAGTACAATTACGGGAA+GGG | + | tig0021037:100152-100171 | Msa1388240:intron | 45.0% | |
| CAATTACGGGAAGGGATGTT+TGG | + | tig0021037:100160-100179 | Msa1388240:intron | 45.0% | |
| ! | TGGTTTGAGACTTTGAGCTG+TGG | + | tig0021037:100242-100261 | Msa1388240:intron | 45.0% |
| ! | ATGATGCTAACAAGGGGCAT+CGG | + | tig0021037:100402-100421 | Msa1388240:intron | 45.0% |
| TATTACCGACGAGACAGAGA+AGG | + | tig0021037:100555-100574 | Msa1388240:intron | 45.0% | |
| ATTACCGACGAGACAGAGAA+GGG | + | tig0021037:100556-100575 | Msa1388240:intron | 45.0% | |
| ATTTAGATGCTCCTGGGTTG+TGG | + | tig0021037:100715-100734 | Msa1388240:CDS | 45.0% | |
| GATTAACAGCTGTTGTGGCT+GGG | - | tig0021037:100875-100894 | None:intergenic | 45.0% | |
| TGATTAACAGCTGTTGTGGC+TGG | - | tig0021037:100876-100895 | None:intergenic | 45.0% | |
| TGAGCAGATTCAGCCTAAAG+AGG | + | tig0021037:100971-100990 | Msa1388240:CDS | 45.0% | |
| AACTGGGCTCCTTAGATAAC+CGG | + | tig0021037:101173-101192 | Msa1388240:three_prime_UTR | 45.0% | |
| AGATAACCGGAACAGAGATG+AGG | + | tig0021037:101186-101205 | Msa1388240:three_prime_UTR | 45.0% | |
| ACTGCTTGTTCTACTCTCCA+TGG | + | tig0021037:101220-101239 | Msa1388240:three_prime_UTR | 45.0% | |
| !!! | GTGTTGCTGGGTTTTGGACA+GGG | - | tig0021037:96365-96384 | None:intergenic | 50.0% |
| !!! | TGTGTTGCTGGGTTTTGGAC+AGG | - | tig0021037:96366-96385 | None:intergenic | 50.0% |
| !! | GGGTTTGTGTTGCTGGGTTT+TGG | - | tig0021037:96371-96390 | None:intergenic | 50.0% |
| ! | TTTGGGGGGTTTGTGTTGCT+GGG | - | tig0021037:96377-96396 | None:intergenic | 50.0% |
| TGTAGATGAAGGGGTTTGGG+GGG | - | tig0021037:96391-96410 | None:intergenic | 50.0% | |
| TTGGATGGGGAAAGGAGAGA+AGG | - | tig0021037:96590-96609 | None:intergenic | 50.0% | |
| AAGGGGGTAGTTTCGGGATT+TGG | - | tig0021037:96629-96648 | None:intergenic | 50.0% | |
| AACGTGAAGGGGGTAGTTTC+GGG | - | tig0021037:96635-96654 | None:intergenic | 50.0% | |
| GAACGTGAAGGGGGTAGTTT+CGG | - | tig0021037:96636-96655 | None:intergenic | 50.0% | |
| TAACTGCGAGAACGTGAAGG+GGG | - | tig0021037:96645-96664 | None:intergenic | 50.0% | |
| GTAACTGCGAGAACGTGAAG+GGG | - | tig0021037:96646-96665 | None:intergenic | 50.0% | |
| CTCACACGAAGGATGCTGAA+AGG | - | tig0021037:97031-97050 | None:intergenic | 50.0% | |
| GGGGCAATATGTGCTGGAAT+TGG | + | tig0021037:97101-97120 | Msa1388240:CDS | 50.0% | |
| CCGATGAGGGAGAGAGTTTA+TGG | + | tig0021037:97171-97190 | Msa1388240:CDS | 50.0% | |
| GTGCTCAGGATGTTGAAGAC+TGG | + | tig0021037:97758-97777 | Msa1388240:intron | 50.0% | |
| CGGAATGGATCCAGATGATG+AGG | + | tig0021037:98332-98351 | Msa1388240:CDS | 50.0% | |
| ATGATGAGGATTGCCAGCCT+AGG | + | tig0021037:98346-98365 | Msa1388240:CDS | 50.0% | |
| TGATGAGGATTGCCAGCCTA+GGG | + | tig0021037:98347-98366 | Msa1388240:CDS | 50.0% | |
| ! | TCAAGTTGTTTGCGCTCCCT+AGG | - | tig0021037:98366-98385 | None:intergenic | 50.0% |
| ! | GTAAACAGAGCATCTGCAGG+AGG | - | tig0021037:98693-98712 | None:intergenic | 50.0% |
| ! | TTTAGAGCATGTGTTCCCCC+TGG | + | tig0021037:98726-98745 | Msa1388240:CDS | 50.0% |
| TCTGAATCGATGCATGCCAG+GGG | - | tig0021037:98745-98764 | None:intergenic | 50.0% | |
| CTCTGAATCGATGCATGCCA+GGG | - | tig0021037:98746-98765 | None:intergenic | 50.0% | |
| !! | CCCCAAGTTATGAGAGCACT+TGG | + | tig0021037:98792-98811 | Msa1388240:CDS | 50.0% |
| GAAGCCAGGAACATAGAGCT+TGG | + | tig0021037:98855-98874 | Msa1388240:CDS | 50.0% | |
| AGAGCTTGGACTTGGATTGC+AGG | + | tig0021037:98869-98888 | Msa1388240:CDS | 50.0% | |
| TGGCCTCTCTTGCTAGAGTA+CGG | + | tig0021037:98958-98977 | Msa1388240:intron | 50.0% | |
| AAAAGTGAGGTGAGGAGACG+GGG | + | tig0021037:99826-99845 | Msa1388240:intron | 50.0% | |
| TCCCTGCCCATCTTTCTCTT+AGG | - | tig0021037:100065-100084 | None:intergenic | 50.0% | |
| GCTGCAGTACAATTACGGGA+AGG | + | tig0021037:100151-100170 | Msa1388240:intron | 50.0% | |
| GTTACTGAAGGTGAGGCTTG+AGG | + | tig0021037:100216-100235 | Msa1388240:intron | 50.0% | |
| GAAGGTGAGGCTTGAGGTAT+TGG | + | tig0021037:100222-100241 | Msa1388240:intron | 50.0% | |
| !! | GGTGGGTGACCATGTTTTTG+AGG | + | tig0021037:100314-100333 | Msa1388240:intron | 50.0% |
| !! | TGATGCTAACAAGGGGCATC+GGG | + | tig0021037:100403-100422 | Msa1388240:intron | 50.0% |
| AAACCGCTTATGAGCGCAAC+CGG | + | tig0021037:100838-100857 | Msa1388240:CDS | 50.0% | |
| GGTAAGGAAAACCAAGGGGA+TGG | - | tig0021037:101065-101084 | None:intergenic | 50.0% | |
| ACTCTCCATGGCTCAGATCA+TGG | + | tig0021037:101232-101251 | Msa1388240:three_prime_UTR | 50.0% | |
| TTGCTCCATGATCTGAGCCA+TGG | - | tig0021037:101240-101259 | None:intergenic | 50.0% | |
| !!! | TGCTGGGTTTTGGACAGGGT+TGG | - | tig0021037:96361-96380 | None:intergenic | 55.0% |
| GTTTGGGGGGTTTGTGTTGC+TGG | - | tig0021037:96378-96397 | None:intergenic | 55.0% | |
| GATGGGGAAAGGAGAGAAGG+AGG | - | tig0021037:96587-96606 | None:intergenic | 55.0% | |
| GCATTGTTAAGGCGCGACGA+AGG | - | tig0021037:96883-96902 | None:intergenic | 55.0% | |
| CTCGTAGCGAAACAAGCGCT+TGG | + | tig0021037:96931-96950 | Msa1388240:CDS | 55.0% | |
| AGGTATCCGAGGGAATTGCC+TGG | + | tig0021037:97147-97166 | Msa1388240:CDS | 55.0% | |
| ATCGGACCAGGCAATTCCCT+CGG | - | tig0021037:97156-97175 | None:intergenic | 55.0% | |
| GGAATTGCCTGGTCCGATGA+GGG | + | tig0021037:97158-97177 | Msa1388240:CDS | 55.0% | |
| GGCTGGCAATCCTCATCATC+TGG | - | tig0021037:98345-98364 | None:intergenic | 55.0% | |
| CTGAATCGATGCATGCCAGG+GGG | - | tig0021037:98744-98763 | None:intergenic | 55.0% | |
| CCTCTGAATCGATGCATGCC+AGG | - | tig0021037:98747-98766 | None:intergenic | 55.0% | |
| !! | CCTGGCATGCATCGATTCAG+AGG | + | tig0021037:98744-98763 | Msa1388240:CDS | 55.0% |
| CAGCCGTACTCTAGCAAGAG+AGG | - | tig0021037:98964-98983 | None:intergenic | 55.0% | |
| CTTGATGCAGAGCGAGACAC+AGG | + | tig0021037:100337-100356 | Msa1388240:intron | 55.0% | |
| GTTTCGCCTTCCAGAAGCTC+GGG | - | tig0021037:100479-100498 | None:intergenic | 55.0% | |
| GGTTTCGCCTTCCAGAAGCT+CGG | - | tig0021037:100480-100499 | None:intergenic | 55.0% | |
| CGAAACCTTATGCGAGCCGT+TGG | + | tig0021037:100493-100512 | Msa1388240:intron | 55.0% | |
| TGCTTCCAACGGCTCGCATA+AGG | - | tig0021037:100501-100520 | None:intergenic | 55.0% | |
| CTGTCCCTTCTCTGTCTCGT+CGG | - | tig0021037:100563-100582 | None:intergenic | 55.0% | |
| TTCTCTTGCAGCCACAACCC+AGG | - | tig0021037:100729-100748 | None:intergenic | 55.0% | |
| TCTCCGGTTGCGCTCATAAG+CGG | - | tig0021037:100844-100863 | None:intergenic | 55.0% | |
| CTTATGAGCGCAACCGGAGA+CGG | + | tig0021037:100844-100863 | Msa1388240:CDS | 55.0% | |
| GGGAATTGCCTGGTCCGATG+AGG | + | tig0021037:97157-97176 | Msa1388240:CDS | 60.0% | |
| ACTCTCTCCCTCATCGGACC+AGG | - | tig0021037:97168-97187 | None:intergenic | 60.0% | |
| GTTGTTTGCGCTCCCTAGGC+TGG | - | tig0021037:98362-98381 | None:intergenic | 60.0% | |
| ! | ATGCGGGAGCTCTAGTGCAC+CGG | + | tig0021037:99446-99465 | Msa1388240:intron | 60.0% |
| ! | GGCATCGGGACAGATGCTGA+GGG | + | tig0021037:100417-100436 | Msa1388240:intron | 60.0% |
| GCATCGGGACAGATGCTGAG+GGG | + | tig0021037:100418-100437 | Msa1388240:intron | 60.0% | |
| CATCGGGACAGATGCTGAGG+GGG | + | tig0021037:100419-100438 | Msa1388240:intron | 60.0% | |
| CTGAGTGTCTCCCGAGCTTC+TGG | + | tig0021037:100466-100485 | Msa1388240:intron | 60.0% | |
| GTGTCTCCCGAGCTTCTGGA+AGG | + | tig0021037:100470-100489 | Msa1388240:intron | 60.0% | |
| TGGCTGGGTTTCTCCGTCTC+CGG | - | tig0021037:100860-100879 | None:intergenic | 60.0% | |
| ! | TGCGGGAGCTCTAGTGCACC+GGG | + | tig0021037:99447-99466 | Msa1388240:intron | 65.0% |
| TGAGGTGAGGAGACGGGGAC+TGG | + | tig0021037:99831-99850 | Msa1388240:intron | 65.0% | |
| GAGGTGAGGAGACGGGGACT+GGG | + | tig0021037:99832-99851 | Msa1388240:intron | 65.0% | |
| GAGACGGGGACTGGGACTCA+TGG | + | tig0021037:99840-99859 | Msa1388240:intron | 65.0% | |
| !! | GGGCATCGGGACAGATGCTG+AGG | + | tig0021037:100416-100435 | Msa1388240:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021037 | gene | 96356 | 101349 | 96356 | ID=Msa1388240;Name=Msa1388240 |
| tig0021037 | mRNA | 96356 | 101349 | 96356 | ID=Msa1388240-mRNA-1;Parent=Msa1388240;Name=Msa1388240-mRNA-1;_AED=0.05;_eAED=0.05;_QI=170|0.75|0.8|1|1|1|5|351|539 |
| tig0021037 | exon | 96356 | 97310 | 96356 | ID=Msa1388240-mRNA-1:exon:11009;Parent=Msa1388240-mRNA-1 |
| tig0021037 | exon | 98251 | 98479 | 98251 | ID=Msa1388240-mRNA-1:exon:11010;Parent=Msa1388240-mRNA-1 |
| tig0021037 | exon | 98690 | 98890 | 98690 | ID=Msa1388240-mRNA-1:exon:11011;Parent=Msa1388240-mRNA-1 |
| tig0021037 | exon | 99600 | 99686 | 99600 | ID=Msa1388240-mRNA-1:exon:11012;Parent=Msa1388240-mRNA-1 |
| tig0021037 | exon | 100681 | 101349 | 100681 | ID=Msa1388240-mRNA-1:exon:11013;Parent=Msa1388240-mRNA-1 |
| tig0021037 | five_prime_UTR | 96356 | 96525 | 96356 | ID=Msa1388240-mRNA-1:five_prime_utr;Parent=Msa1388240-mRNA-1 |
| tig0021037 | CDS | 96526 | 97310 | 96526 | ID=Msa1388240-mRNA-1:cds;Parent=Msa1388240-mRNA-1 |
| tig0021037 | CDS | 98251 | 98479 | 98251 | ID=Msa1388240-mRNA-1:cds;Parent=Msa1388240-mRNA-1 |
| tig0021037 | CDS | 98690 | 98890 | 98690 | ID=Msa1388240-mRNA-1:cds;Parent=Msa1388240-mRNA-1 |
| tig0021037 | CDS | 99600 | 99686 | 99600 | ID=Msa1388240-mRNA-1:cds;Parent=Msa1388240-mRNA-1 |
| tig0021037 | CDS | 100681 | 100998 | 100681 | ID=Msa1388240-mRNA-1:cds;Parent=Msa1388240-mRNA-1 |
| tig0021037 | three_prime_UTR | 100999 | 101349 | 100999 | ID=Msa1388240-mRNA-1:three_prime_utr;Parent=Msa1388240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
