AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0586540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0586540 MtrunA17_Chr4g0011041 98.282 582 9 1 1 582 1 581 0.0 1165
Msa0586540 MtrunA17_Chr4g0011471 68.797 532 164 2 51 582 30 559 0.0 728
Msa0586540 MtrunA17_Chr4g0054891 49.020 561 280 4 23 582 96 651 0.0 533
Msa0586540 MtrunA17_Chr5g0400371 48.336 571 288 4 16 582 91 658 0.0 531
Msa0586540 MtrunA17_Chr7g0217461 47.257 565 288 4 22 580 9 569 2.31e-177 514
Msa0586540 MtrunA17_Chr7g0214461 42.599 554 303 7 32 582 73 614 1.09e-151 450
Msa0586540 MtrunA17_Chr1g0213711 41.237 582 317 6 1 582 1 557 2.17e-149 442
Msa0586540 MtrunA17_Chr7g0218851 43.604 555 298 8 32 582 41 584 2.90e-143 427
Msa0586540 MtrunA17_Chr8g0375311 36.735 588 350 8 2 580 6 580 3.49e-132 398
Msa0586540 MtrunA17_Chr8g0375351 35.406 579 360 7 7 580 11 580 5.16e-127 385
Msa0586540 MtrunA17_Chr8g0375291 36.860 586 350 8 1 576 1 576 7.37e-126 382
Msa0586540 MtrunA17_Chr8g0375341 35.345 580 359 8 7 580 11 580 1.33e-125 381
Msa0586540 MtrunA17_Chr7g0241741 35.626 567 341 12 23 580 8 559 2.50e-120 367
Msa0586540 MtrunA17_Chr8g0375361 35.467 578 358 7 8 580 12 579 1.85e-118 363
Msa0586540 MtrunA17_Chr8g0375321 34.477 583 364 8 4 580 7 577 2.57e-118 362
Msa0586540 MtrunA17_Chr3g0104011 36.788 579 335 13 13 579 1 560 2.24e-117 360
Msa0586540 MtrunA17_Chr8g0375331 35.201 571 357 6 15 580 2 564 7.88e-117 358
Msa0586540 MtrunA17_Chr4g0005901 35.517 580 351 11 7 579 5 568 1.22e-116 358
Msa0586540 MtrunA17_Chr5g0399061 34.821 560 347 8 29 579 19 569 5.24e-112 346
Msa0586540 MtrunA17_Chr7g0261811 33.275 571 358 9 16 577 6 562 8.84e-112 346
Msa0586540 MtrunA17_Chr7g0261881 32.982 570 361 8 16 577 6 562 1.28e-111 345
Msa0586540 MtrunA17_Chr7g0261791 34.602 578 353 10 11 577 2 565 3.81e-111 345
Msa0586540 MtrunA17_Chr7g0261771 33.218 578 362 9 11 577 2 566 7.18e-111 344
Msa0586540 MtrunA17_Chr1g0166791 33.746 566 352 7 23 579 10 561 6.85e-110 341
Msa0586540 MtrunA17_Chr3g0142101 31.937 573 370 8 12 581 10 565 2.06e-107 334
Msa0586540 MtrunA17_Chr1g0187241 32.180 578 363 8 15 579 2 563 1.47e-105 330
Msa0586540 MtrunA17_Chr1g0166711 32.986 576 362 7 13 579 1 561 2.85e-103 324
Msa0586540 MtrunA17_Chr1g0166741 32.188 553 355 8 15 564 4 539 3.78e-103 323
Msa0586540 MtrunA17_Chr3g0142091 32.925 571 365 8 14 581 3 558 5.90e-103 322
Msa0586540 MtrunA17_Chr7g0261851 33.449 577 363 8 11 579 2 565 8.71e-103 323
Msa0586540 MtrunA17_Chr5g0399071 32.737 559 360 5 29 579 17 567 5.02e-102 320
Msa0586540 MtrunA17_Chr4g0014871 32.149 563 344 9 25 579 18 550 1.99e-98 310
Msa0586540 MtrunA17_Chr3g0114501 32.218 568 357 10 23 579 8 558 4.88e-97 307
Msa0586540 MtrunA17_Chr4g0063591 35.752 565 345 11 21 580 6 557 2.08e-96 305
Msa0586540 MtrunA17_Chr1g0166771 32.809 509 326 6 58 564 12 506 4.45e-96 303
Msa0586540 MtrunA17_Chr3g0112671 30.556 576 379 9 5 579 2 557 3.30e-94 300
Msa0586540 MtrunA17_Chr4g0056431 33.037 563 356 11 29 579 17 570 1.95e-93 298
Msa0586540 MtrunA17_Chr4g0014791 31.261 563 346 9 25 579 17 546 3.95e-91 291
Msa0586540 MtrunA17_Chr3g0077151 33.451 568 326 12 23 579 14 540 2.53e-90 288
Msa0586540 MtrunA17_Chr4g0014841 32.112 573 344 12 22 582 14 553 4.78e-90 288
Msa0586540 MtrunA17_Chr7g0240381 29.317 556 375 8 25 579 17 555 1.11e-88 285
Msa0586540 MtrunA17_Chr4g0008651 30.287 558 373 10 25 579 22 566 2.90e-88 285
Msa0586540 MtrunA17_Chr4g0014801 31.439 563 347 10 25 579 17 548 1.27e-87 282
Msa0586540 MtrunA17_Chr5g0422881 30.741 553 362 7 37 579 20 561 4.53e-86 279
Msa0586540 MtrunA17_Chr2g0276751 31.866 568 356 11 15 579 21 560 4.89e-86 279
Msa0586540 MtrunA17_Chr4g0014781 31.551 561 349 9 25 579 17 548 1.39e-84 274
Msa0586540 MtrunA17_Chr3g0133341 29.715 562 358 9 33 580 10 548 1.37e-83 271
Msa0586540 MtrunA17_Chr3g0112611 26.795 571 398 8 15 579 10 566 5.67e-81 265
Msa0586540 MtrunA17_Chr7g0261751 31.772 491 292 8 11 464 2 486 2.62e-80 262
Msa0586540 MtrunA17_Chr8g0353031 30.036 556 348 11 39 580 20 548 8.03e-80 262
Msa0586540 MtrunA17_Chr7g0255621 29.340 576 386 9 13 580 1 563 1.04e-79 262
Msa0586540 MtrunA17_Chr1g0193391 29.286 560 374 9 25 580 3 544 2.34e-79 261
Msa0586540 MtrunA17_Chr5g0415791 28.961 587 385 10 4 579 9 574 1.26e-78 259
Msa0586540 MtrunA17_Chr7g0240271 29.055 561 389 5 24 579 11 567 1.66e-78 259
Msa0586540 MtrunA17_Chr2g0284701 30.637 581 365 15 25 580 19 586 2.61e-78 259
Msa0586540 MtrunA17_Chr5g0439381 29.196 572 382 7 12 580 3 554 1.64e-77 256
Msa0586540 MtrunA17_Chr7g0214731 27.749 573 381 11 28 580 51 610 2.12e-77 257
Msa0586540 MtrunA17_Chr4g0059981 29.273 550 370 8 43 580 37 579 4.11e-77 256
Msa0586540 MtrunA17_Chr7g0255601 29.908 545 364 9 41 576 31 566 7.02e-77 255
Msa0586540 MtrunA17_Chr5g0415961 30.087 575 367 12 25 580 12 570 1.68e-76 253
Msa0586540 MtrunA17_Chr1g0166731 33.548 465 285 7 124 579 9 458 1.82e-76 250
Msa0586540 MtrunA17_Chr7g0255611 29.768 561 374 10 24 575 18 567 3.31e-76 253
Msa0586540 MtrunA17_Chr7g0261661 33.043 460 287 8 128 579 4 450 3.35e-76 250
Msa0586540 MtrunA17_Chr4g0069581 30.667 525 346 7 58 580 7 515 5.84e-76 251
Msa0586540 MtrunA17_Chr7g0271221 29.326 549 362 9 37 580 17 544 7.56e-75 249
Msa0586540 MtrunA17_Chr4g0059991 28.242 563 378 10 36 581 21 574 2.31e-72 243
Msa0586540 MtrunA17_Chr8g0362781 27.191 559 389 9 33 579 26 578 1.44e-71 240
Msa0586540 MtrunA17_Chr8g0390331 29.676 556 363 13 36 579 14 553 1.95e-71 240
Msa0586540 MtrunA17_Chr8g0379971 29.813 587 376 11 25 580 8 589 5.23e-71 239
Msa0586540 MtrunA17_Chr4g0014861 32.200 441 268 10 154 582 11 432 2.04e-70 233
Msa0586540 MtrunA17_Chr4g0059971 25.641 585 417 8 5 580 7 582 8.40e-69 233
Msa0586540 MtrunA17_Chr1g0157611 28.391 553 374 10 36 579 15 554 6.01e-68 230
Msa0586540 MtrunA17_Chr8g0362711 29.485 563 383 9 26 580 13 569 1.52e-67 229
Msa0586540 MtrunA17_Chr4g0060001 27.051 573 405 8 15 579 2 569 3.69e-67 229
Msa0586540 MtrunA17_Chr1g0157601 27.717 552 375 12 38 579 16 553 3.67e-66 225
Msa0586540 MtrunA17_Chr2g0325951 28.622 566 372 11 25 580 2 545 9.48e-66 224
Msa0586540 MtrunA17_Chr2g0326211 27.739 566 377 11 25 580 2 545 4.97e-65 222
Msa0586540 MtrunA17_Chr7g0261731 32.676 355 222 5 13 361 4 347 4.74e-63 211
Msa0586540 MtrunA17_Chr2g0331521 27.076 554 381 13 37 579 22 563 7.81e-63 217
Msa0586540 MtrunA17_Chr1g0147631 29.114 553 367 12 41 582 29 567 2.79e-62 216
Msa0586540 MtrunA17_Chr8g0379991 29.508 549 328 12 81 580 24 562 3.21e-62 215
Msa0586540 MtrunA17_Chr7g0240281 27.057 547 390 5 37 577 24 567 6.26e-62 214
Msa0586540 MtrunA17_Chr2g0325961 28.445 566 374 10 25 580 2 546 3.11e-60 209
Msa0586540 MtrunA17_Chr4g0003761 25.976 589 406 13 1 579 1 569 4.14e-60 210
Msa0586540 MtrunA17_Chr1g0157621 27.032 529 359 11 62 579 5 517 2.14e-59 207
Msa0586540 MtrunA17_Chr7g0240211 29.476 458 312 7 128 579 4 456 3.88e-59 204
Msa0586540 MtrunA17_Chr7g0240181 29.476 458 312 7 128 579 4 456 5.34e-59 204
Msa0586540 MtrunA17_Chr7g0235521 28.884 457 316 5 128 579 4 456 6.05e-59 204
Msa0586540 MtrunA17_Chr7g0240131 29.258 458 313 7 128 579 4 456 1.48e-58 203
Msa0586540 MtrunA17_Chr8g0362801 29.032 465 315 9 125 580 1 459 8.27e-58 201
Msa0586540 MtrunA17_Chr3g0082631 28.416 461 308 7 133 579 4 456 6.56e-57 198
Msa0586540 MtrunA17_Chr3g0142111 33.333 306 200 3 14 317 23 326 1.13e-56 194
Msa0586540 MtrunA17_Chr2g0331481 26.212 557 388 12 33 579 23 566 2.48e-54 195
Msa0586540 MtrunA17_Chr7g0240151 29.039 458 296 8 128 579 4 438 4.53e-54 190
Msa0586540 MtrunA17_Chr2g0331471 26.766 538 373 12 52 579 103 629 1.07e-53 194
Msa0586540 MtrunA17_Chr1g0177591 26.296 540 360 14 49 579 54 564 4.68e-53 190
Msa0586540 MtrunA17_Chr6g0451841 28.364 550 352 12 44 579 12 533 1.11e-52 188
Msa0586540 MtrunA17_Chr2g0331511 24.304 539 391 10 49 579 33 562 9.81e-51 185
Msa0586540 MtrunA17_Chr5g0415841 26.856 458 313 10 133 580 12 457 3.26e-49 177
Msa0586540 MtrunA17_Chr1g0177611 26.256 438 302 10 147 579 14 435 8.86e-45 164
Msa0586540 MtrunA17_Chr3g0112631 30.216 278 175 6 310 579 3 269 8.45e-44 158
Msa0586540 MtrunA17_Chr2g0331461 25.357 560 389 14 33 579 23 566 1.60e-43 164
Msa0586540 MtrunA17_Chr1g0177631 26.196 439 301 12 147 579 14 435 4.64e-42 157
Msa0586540 MtrunA17_Chr3g0142121 32.721 272 167 6 311 581 11 267 5.84e-40 147
Msa0586540 MtrunA17_Chr7g0234381 28.904 429 252 12 161 579 33 418 1.04e-37 144
Msa0586540 MtrunA17_Chr7g0234181 28.211 436 246 10 161 579 28 413 2.90e-37 143
Msa0586540 MtrunA17_Chr7g0234151 28.404 426 252 12 164 579 36 418 4.03e-36 140
Msa0586540 MtrunA17_Chr4g0060071 31.301 246 162 4 340 580 53 296 4.52e-34 131
Msa0586540 MtrunA17_Chr7g0261721 35.052 194 120 3 388 577 5 196 3.72e-30 118
Msa0586540 MtrunA17_Chr7g0261671 36.207 116 71 1 11 123 3 118 2.00e-21 90.1
Msa0586540 MtrunA17_Chr3g0112651 28.272 191 126 3 124 311 21 203 2.80e-19 86.7
Msa0586540 MtrunA17_Chr1g0166721 33.333 120 76 1 13 128 1 120 1.25e-17 80.1
Msa0586540 MtrunA17_Chr4g0014851 37.374 99 62 0 25 123 18 116 1.32e-17 80.5
Msa0586540 MtrunA17_Chr4g0060061 31.356 118 81 0 147 264 6 123 7.05e-16 74.7
Msa0586540 MtrunA17_Chr7g0261831 28.105 153 96 3 268 417 3 144 5.21e-15 74.3
Msa0586540 MtrunA17_Chr2g0326221 24.464 233 148 5 349 580 16 221 1.27e-14 73.6
Msa0586540 MtrunA17_Chr1g0147591 22.500 200 145 4 166 362 9 201 3.11e-14 71.6
Msa0586540 MtrunA17_Chr3g0112661 35.354 99 64 0 25 123 19 117 1.04e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0586540 AT1G32450.1 47.109 588 291 7 4 582 8 584 4.51e-180 522
Msa0586540 AT4G21680.1 46.831 568 290 5 22 582 11 573 2.73e-168 491
Msa0586540 AT5G19640.1 41.391 575 313 7 11 582 31 584 4.97e-149 442
Msa0586540 AT2G02040.1 36.814 565 340 7 23 580 25 579 4.37e-129 390
Msa0586540 AT1G62200.1 35.274 584 364 8 1 580 13 586 3.76e-123 375
Msa0586540 AT3G54140.1 36.170 564 344 9 23 580 8 561 5.12e-121 369
Msa0586540 AT3G54140.2 36.170 564 344 9 23 580 8 561 5.12e-121 369
Msa0586540 AT5G01180.2 35.524 563 346 10 23 579 9 560 1.07e-117 361
Msa0586540 AT5G01180.3 35.524 563 346 10 23 579 9 560 1.07e-117 361
Msa0586540 AT5G01180.1 35.524 563 346 10 23 579 9 560 1.07e-117 361
Msa0586540 AT1G62200.2 33.768 613 363 9 1 580 13 615 3.70e-117 361
Msa0586540 AT1G62200.3 33.768 613 363 9 1 580 27 629 4.02e-117 361
Msa0586540 AT5G46040.1 32.616 558 352 9 13 562 3 544 1.84e-105 330
Msa0586540 AT2G26690.1 34.159 565 359 7 18 580 3 556 6.53e-105 328
Msa0586540 AT2G02020.1 32.526 578 336 8 7 579 12 540 2.65e-104 325
Msa0586540 AT5G46050.1 33.333 564 340 10 13 562 3 544 9.15e-102 320
Msa0586540 AT2G26690.3 34.357 521 329 7 62 580 2 511 3.27e-97 306
Msa0586540 AT2G26690.2 34.357 521 329 7 62 580 14 523 4.32e-97 306
Msa0586540 AT2G37900.1 31.607 560 366 9 25 582 24 568 1.40e-95 303
Msa0586540 AT1G12110.1 33.631 559 354 8 29 579 17 566 5.63e-95 302
Msa0586540 AT2G02020.2 31.488 578 321 10 7 579 12 519 1.39e-93 297
Msa0586540 AT3G53960.1 28.889 585 395 10 1 579 1 570 6.65e-89 287
Msa0586540 AT1G59740.1 31.485 559 366 8 24 577 26 572 2.09e-88 285
Msa0586540 AT1G69870.1 30.490 551 371 9 36 580 48 592 1.71e-87 284
Msa0586540 AT2G37900.2 32.207 503 324 9 82 582 2 489 3.47e-86 276
Msa0586540 AT3G54450.1 29.623 557 351 9 37 579 10 539 3.45e-85 276
Msa0586540 AT2G40460.1 30.142 564 368 9 23 579 8 552 1.82e-84 275
Msa0586540 AT1G72140.1 30.360 583 348 13 14 579 8 549 9.51e-81 264
Msa0586540 AT5G13400.1 28.846 572 374 11 28 580 52 609 6.72e-80 264
Msa0586540 AT1G22540.1 31.607 560 348 10 27 579 18 549 8.46e-80 262
Msa0586540 AT1G72130.1 31.694 549 328 12 37 579 23 530 2.65e-79 260
Msa0586540 AT1G68570.1 30.609 575 378 9 15 579 2 565 6.39e-79 260
Msa0586540 AT1G72125.1 29.610 564 359 12 27 579 17 553 2.86e-77 255
Msa0586540 AT1G68570.2 31.413 538 351 7 52 579 6 535 2.93e-77 255
Msa0586540 AT3G21670.1 30.373 563 369 8 24 580 11 556 3.21e-77 256
Msa0586540 AT1G72120.1 29.255 564 357 12 27 579 17 549 3.38e-77 255
Msa0586540 AT1G27080.1 29.670 546 363 10 41 580 16 546 1.13e-76 254
Msa0586540 AT1G33440.1 31.673 562 359 13 25 579 24 567 5.61e-74 248
Msa0586540 AT5G46050.2 33.186 452 268 9 125 562 1 432 1.66e-73 243
Msa0586540 AT5G28470.2 28.336 547 382 6 36 579 14 553 6.57e-73 244
Msa0586540 AT1G22570.1 28.648 562 364 9 11 560 2 538 6.63e-73 244
Msa0586540 AT1G18880.1 27.818 550 377 9 43 580 23 564 7.02e-73 244
Msa0586540 AT3G16180.1 29.623 557 366 14 37 579 21 565 1.21e-72 244
Msa0586540 AT1G52190.1 28.774 563 366 12 37 579 19 566 5.85e-72 242
Msa0586540 AT5G28470.1 27.788 547 383 6 36 579 14 551 5.94e-71 238
Msa0586540 AT1G22550.1 28.718 585 369 11 12 579 3 556 3.31e-70 236
Msa0586540 AT1G27080.2 29.094 519 347 10 68 580 1 504 2.06e-69 234
Msa0586540 AT5G14940.1 29.630 567 344 13 37 580 5 539 5.17e-69 233
Msa0586540 AT1G27040.1 28.596 577 387 9 13 582 3 561 1.46e-68 232
Msa0586540 AT1G27040.2 28.673 565 380 8 25 582 9 557 2.16e-68 231
Msa0586540 AT5G62680.1 26.619 556 382 10 43 581 47 593 7.43e-68 231
Msa0586540 AT1G69850.1 27.926 598 378 10 13 580 3 577 2.47e-66 227
Msa0586540 AT1G22570.2 28.210 514 332 9 59 560 13 501 4.20e-65 222
Msa0586540 AT3G45710.1 26.617 541 375 9 41 580 23 542 2.65e-64 221
Msa0586540 AT3G45660.1 26.372 565 383 10 21 580 4 540 3.46e-64 220
Msa0586540 AT3G45660.3 26.372 565 383 10 21 580 4 540 3.46e-64 220
Msa0586540 AT1G27040.3 28.759 532 356 8 58 582 14 529 4.79e-64 219
Msa0586540 AT3G45660.2 26.372 565 383 10 21 580 25 561 6.43e-64 220
Msa0586540 AT3G45680.1 26.571 557 384 10 25 580 8 540 8.33e-64 219
Msa0586540 AT3G47960.1 27.240 558 374 14 43 581 65 609 3.20e-63 219
Msa0586540 AT5G62730.1 27.257 565 377 7 25 579 42 582 3.90e-62 216
Msa0586540 AT3G45720.1 25.621 523 363 10 56 576 36 534 2.34e-61 213
Msa0586540 AT3G45650.1 25.265 566 391 8 20 580 3 541 1.11e-59 208
Msa0586540 AT3G01350.1 27.257 576 356 11 37 580 5 549 4.87e-58 204
Msa0586540 AT5G62730.2 26.972 545 364 7 45 579 3 523 1.85e-57 201
Msa0586540 AT1G72130.2 29.778 450 272 11 136 579 1 412 3.29e-57 198
Msa0586540 AT1G72130.3 29.778 450 272 11 136 579 1 412 3.29e-57 198
Msa0586540 AT3G45700.1 24.545 550 385 10 33 580 9 530 3.95e-57 201
Msa0586540 AT3G45650.2 24.155 592 391 9 20 580 3 567 2.91e-54 194
Msa0586540 AT3G45690.1 25.986 558 345 15 27 580 4 497 3.05e-54 192
Msa0586540 AT1G69860.1 26.055 545 377 11 43 580 22 547 7.70e-52 187
Msa0586540 AT3G25280.1 25.893 560 357 12 29 579 11 521 2.68e-51 184
Msa0586540 AT3G25260.1 24.412 553 368 11 29 579 11 515 2.87e-51 184
Msa0586540 AT2G38100.2 22.986 509 354 12 75 579 10 484 2.66e-27 116
Msa0586540 AT2G38100.1 22.986 509 354 12 75 579 26 500 3.73e-27 115
Msa0586540 AT2G38100.3 22.986 509 354 12 75 579 32 506 5.18e-27 115
Msa0586540 AT5G11570.1 30.488 246 161 6 336 579 239 476 5.07e-25 108
Msa0586540 AT5G11570.1 25.118 211 152 3 49 257 23 229 1.33e-18 89.4

Find 135 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTATTTCTTCTCTTTAAT+TGG 0.108015 4_2:+7749597 Msa0586540:CDS
AAATATTGTTGTTGATATTA+TGG 0.124582 4_2:-7753574 None:intergenic
CGCAGGAGTGGAGGCAAATT+TGG 0.185968 4_2:+7749500 Msa0586540:CDS
TCAAACTACAACTTCCTAAT+TGG 0.204284 4_2:-7753234 None:intergenic
TTCATCACTTTAATATATAA+TGG 0.204997 4_2:-7752708 None:intergenic
GCCTTGGATCTTTGTTCTTT+AGG 0.210052 4_2:-7750943 None:intergenic
GACATTGGGTGCTTGGATTC+TGG 0.219716 4_2:+7751049 Msa0586540:CDS
AGATCCAAGGCCTCAATTTA+TGG 0.235422 4_2:+7750955 Msa0586540:CDS
TTATATGCCCTTGTATCTTT+TGG 0.252904 4_2:-7753189 None:intergenic
AACAACGAACCAGTAGATTT+AGG 0.265776 4_2:+7748145 Msa0586540:five_prime_UTR
AAGATACAAGGGCATATAAT+TGG 0.269835 4_2:+7753193 Msa0586540:exon
TACAGACACTATAAGACTTT+TGG 0.287136 4_2:+7751129 Msa0586540:CDS
AATATTGTTGTTGATATTAT+GGG 0.294316 4_2:-7753573 None:intergenic
TCCTGTTTCTCTCAGATCAT+TGG 0.311049 4_2:+7753505 Msa0586540:three_prime_UTR
TGTAGCTCGGTAGGAAGTTT+TGG 0.311952 4_2:-7752738 None:intergenic
TTGGAGAATGAGATTGCAAT+AGG 0.319289 4_2:-7753536 None:intergenic
ATTGGTTGCTGAGACTATAT+TGG 0.326940 4_2:+7751008 Msa0586540:CDS
TCCAATTAAAGAGAAGAAAT+AGG 0.340141 4_2:-7749598 None:intergenic
TCATCACTTTAATATATAAT+GGG 0.345117 4_2:-7752707 None:intergenic
AAATTTCAAATACAATCAAT+TGG 0.357133 4_2:+7751204 Msa0586540:CDS
ATAATAACATTGATTGTTGC+TGG 0.357926 4_2:+7752789 Msa0586540:CDS
ACAACGAACCAGTAGATTTA+GGG 0.359888 4_2:+7748146 Msa0586540:five_prime_UTR
TAAATGATGGTCATTTAGAT+AGG 0.361054 4_2:+7753108 Msa0586540:CDS
ACCAATGATCTGAGAGAAAC+AGG 0.368244 4_2:-7753506 None:intergenic
TCCAGATGGTTTGGAAAGCT+TGG 0.370188 4_2:+7752965 Msa0586540:CDS
AAGAGAAGAAGCAACCAATT+AGG 0.372805 4_2:+7753220 Msa0586540:three_prime_UTR
ATCAATTCCTGTACAAAAGA+TGG 0.380758 4_2:+7748467 Msa0586540:CDS
CCACATCGTTGTGAACAAAT+AGG 0.380773 4_2:+7750787 Msa0586540:CDS
CATCTCTTTACCATCATTGC+TGG 0.384744 4_2:-7752841 None:intergenic
GTAGCCATAAATTGAGGCCT+TGG 0.385297 4_2:-7750959 None:intergenic
TTTCTCAGTGACTCATATCT+AGG 0.391794 4_2:+7749624 Msa0586540:CDS
GGTTTGGAAAGCTTGGGAAT+GGG 0.392053 4_2:+7752972 Msa0586540:CDS
GGCATTGAACTTGGGATCAT+TGG 0.393054 4_2:+7750990 Msa0586540:CDS
TAAATCTACTGGTTCGTTGT+TGG 0.396987 4_2:-7748143 None:intergenic
CTCTACCACGATGGTATTCA+AGG 0.400582 4_2:+7751234 Msa0586540:CDS
AATTTCAAATACAATCAATT+GGG 0.408308 4_2:+7751205 Msa0586540:CDS
CTACTGGTTCGTTGTTGGTT+TGG 0.409861 4_2:-7748138 None:intergenic
TGTAAGGTTGTTGAAGAAGA+GGG 0.410003 4_2:+7748440 Msa0586540:intron
AGAAGTGCCACATTGTTGTT+AGG 0.414826 4_2:+7748542 Msa0586540:CDS
AGAGAGGTTTATAAGAAGCT+AGG 0.416655 4_2:-7748261 None:intergenic
GTTGTGAAAACTTAGAGAAA+GGG 0.416740 4_2:-7751155 None:intergenic
ATGTCTACAATCAGAAACTA+TGG 0.417291 4_2:-7753337 None:intergenic
GTCACAAACTCCAGATGGTT+TGG 0.418889 4_2:+7752956 Msa0586540:CDS
ACTACAGGACATTGGGTGCT+TGG 0.420293 4_2:+7751042 Msa0586540:CDS
AAGATTGTGCAAAACCATAT+TGG 0.420486 4_2:-7752525 None:intergenic
GTTTGGAAAGCTTGGGAATG+GGG 0.423675 4_2:+7752973 Msa0586540:CDS
AAATGACCATCATTTAGATT+AGG 0.434159 4_2:-7753101 None:intergenic
CCCAAGCTTTCCAAACCATC+TGG 0.434567 4_2:-7752966 None:intergenic
TCAAATGCTGTCATGCTTGA+AGG 0.446123 4_2:-7752636 None:intergenic
GAGCTATTAGATATATTGAT+AGG 0.448423 4_2:-7750855 None:intergenic
CTATGCATTGTTGATAAGAA+TGG 0.450469 4_2:+7748285 Msa0586540:exon
GCGCCAAGTGTTGGTAATGC+AGG 0.453562 4_2:-7750898 None:intergenic
AGTTGTGAAAACTTAGAGAA+AGG 0.454835 4_2:-7751156 None:intergenic
CCAGATGGTTTGGAAAGCTT+GGG 0.462004 4_2:+7752966 Msa0586540:CDS
TGGTTTGGAAAGCTTGGGAA+TGG 0.463077 4_2:+7752971 Msa0586540:CDS
CATAGAGACTACAGGACATT+GGG 0.463120 4_2:+7751035 Msa0586540:CDS
TGGTCAAGGTCAACATGGTT+GGG 0.464640 4_2:+7753073 Msa0586540:CDS
TTACTATGATGAACACAAGT+TGG 0.466550 4_2:-7749671 None:intergenic
TGCAGTGGCTTTCGCAGGAG+TGG 0.468532 4_2:+7749488 Msa0586540:CDS
TCGTTGTTGGTTTGGTTGGT+AGG 0.473081 4_2:-7748130 None:intergenic
TGGTTCGTTGTTGGTTTGGT+TGG 0.477413 4_2:-7748134 None:intergenic
GTTTCACCTAATCTAAATGA+TGG 0.478316 4_2:+7753095 Msa0586540:CDS
TCCGCACTTGGTTGCTATGT+CGG 0.479600 4_2:+7753011 Msa0586540:CDS
CTTTCTCTATTTGTTGAGCA+AGG 0.480145 4_2:+7752573 Msa0586540:CDS
CGAACAAGATTTAACGTCTC+AGG 0.480708 4_2:+7748315 Msa0586540:CDS
GTTAAATATGTGGCCACCCT+TGG 0.482512 4_2:-7753433 None:intergenic
GAAACTATGGCACCAAAGTC+AGG 0.489019 4_2:-7753324 None:intergenic
TGGAGAATGAGATTGCAATA+GGG 0.491323 4_2:-7753535 None:intergenic
CTGGTTGCAGTGGCTTTCGC+AGG 0.492804 4_2:+7749483 Msa0586540:CDS
ATATGTGGCCACCCTTGGTA+AGG 0.493895 4_2:-7753428 None:intergenic
TCAATATATCTAATAGCTCT+AGG 0.497358 4_2:+7750859 Msa0586540:CDS
GTGGTCAAGGTCAACATGGT+TGG 0.498024 4_2:+7753072 Msa0586540:CDS
GTAAGGTTGTTGAAGAAGAG+GGG 0.503830 4_2:+7748441 Msa0586540:intron
TTTATAAGAAGACATGTCAA+TGG 0.503977 4_2:+7753395 Msa0586540:three_prime_UTR
CAAGAAGGATGTCCTGACTT+TGG 0.507108 4_2:+7753312 Msa0586540:three_prime_UTR
TATCTAATAGCTCTAGGAAG+TGG 0.508615 4_2:+7750865 Msa0586540:CDS
TTGTAAGGTTGTTGAAGAAG+AGG 0.510306 4_2:+7748439 Msa0586540:intron
CCAATACTTTGTAGCTCGGT+AGG 0.515657 4_2:-7752747 None:intergenic
AGAAGAATACACCATGCAAA+TGG 0.524359 4_2:+7751273 Msa0586540:CDS
GACCCTGCATTACCAACACT+TGG 0.525702 4_2:+7750895 Msa0586540:CDS
TAAATTGTGACAGTGAATCA+AGG 0.529647 4_2:+7749459 Msa0586540:intron
GGAAGACGCCCTAAATCTAC+TGG 0.532407 4_2:-7748154 None:intergenic
CCTACCGAGCTACAAAGTAT+TGG 0.536305 4_2:+7752747 Msa0586540:CDS
TGTATGTGCCAAAAGATACA+AGG 0.536921 4_2:+7753181 Msa0586540:CDS
GATAGAATGACAAGTGGAGT+TGG 0.539367 4_2:+7753260 Msa0586540:three_prime_UTR
CTGAAAACTAGTTAAATATG+TGG 0.541672 4_2:-7753443 None:intergenic
TTATAAGAAGACATGTCAAT+GGG 0.544641 4_2:+7753396 Msa0586540:three_prime_UTR
TACACCATGCAAATGGCCTC+AGG 0.545327 4_2:+7751280 Msa0586540:CDS
ACTGAGATGTTACTAGGTAA+AGG 0.549750 4_2:+7752429 Msa0586540:CDS
GTAAATAAAATTACATCAAG+TGG 0.555312 4_2:+7753053 Msa0586540:CDS
AAAATTACATCAAGTGGTCA+AGG 0.555861 4_2:+7753059 Msa0586540:CDS
TCAATTCCTGTACAAAAGAT+GGG 0.556331 4_2:+7748468 Msa0586540:CDS
GAGGCAACTGAGATGTTACT+AGG 0.559498 4_2:+7752423 Msa0586540:CDS
TTCACGTCACAAACTCCAGA+TGG 0.562555 4_2:+7752951 Msa0586540:CDS
ACATAGAGACTACAGGACAT+TGG 0.563249 4_2:+7751034 Msa0586540:CDS
CGCCAAGTGTTGGTAATGCA+GGG 0.564021 4_2:-7750897 None:intergenic
AGCTGGTATTGTTTCTGATG+AGG 0.570990 4_2:+7752404 Msa0586540:CDS
ATAAAAGTAGCCATAAATTG+AGG 0.571302 4_2:-7750965 None:intergenic
ATATTGTTGTTGATATTATG+GGG 0.573192 4_2:-7753572 None:intergenic
GATGCCAATACTTTGTAGCT+CGG 0.579265 4_2:-7752751 None:intergenic
AATTGATCAGCGCCAAGTGT+TGG 0.580177 4_2:-7750907 None:intergenic
AGTGGCTTTCGCAGGAGTGG+AGG 0.583063 4_2:+7749491 Msa0586540:CDS
ATTTCAAATACAATCAATTG+GGG 0.584684 4_2:+7751206 Msa0586540:CDS
AGCTCATCCCTTACCAAGGG+TGG 0.589335 4_2:+7753420 Msa0586540:three_prime_UTR
CCTATTTGTTCACAACGATG+TGG 0.590990 4_2:-7750787 None:intergenic
ATCAACAATGCATAGGAGAG+AGG 0.592328 4_2:-7748277 None:intergenic
TTGGCTTACATAGAGACTAC+AGG 0.593031 4_2:+7751027 Msa0586540:CDS
TATGTGGCCACCCTTGGTAA+GGG 0.594953 4_2:-7753427 None:intergenic
ACCTAAAGAACAAAGATCCA+AGG 0.596150 4_2:+7750942 Msa0586540:CDS
TGATTTGATAGAATGACAAG+TGG 0.599912 4_2:+7753254 Msa0586540:three_prime_UTR
AATGCTGTCATGCTTGAAGG+AGG 0.601186 4_2:-7752633 None:intergenic
GAATCAAGGACTGGTTGCAG+TGG 0.604901 4_2:+7749473 Msa0586540:CDS
ATTGAAACAAACTAATGTTG+AGG 0.605351 4_2:+7749542 Msa0586540:CDS
GCATTGTTGATAAGAATGGA+TGG 0.609229 4_2:+7748289 Msa0586540:exon
TCTACCACGATGGTATTCAA+GGG 0.612829 4_2:+7751235 Msa0586540:CDS
CGTACCTGAGGCCATTTGCA+TGG 0.614860 4_2:-7751284 None:intergenic
TGTTGAGCAAGGTTCTACAA+TGG 0.616288 4_2:+7752584 Msa0586540:CDS
CATTCTTATCAACAATGCAT+AGG 0.617280 4_2:-7748284 None:intergenic
GTTGGAATATAATGCAAGTG+AGG 0.617388 4_2:-7749653 None:intergenic
TGGCGCTGATCAATTTGATG+AGG 0.622769 4_2:+7750915 Msa0586540:CDS
ATTCCTAAAAGCATATATTG+TGG 0.634005 4_2:-7752891 None:intergenic
TGTGACAGTGAATCAAGGAC+TGG 0.636123 4_2:+7749464 Msa0586540:intron
ATGCTGTCATGCTTGAAGGA+GGG 0.636585 4_2:-7752632 None:intergenic
GGGTAGCTCATCCCTTACCA+AGG 0.645106 4_2:+7753416 Msa0586540:three_prime_UTR
TCAAGTGGTCAAGGTCAACA+TGG 0.646091 4_2:+7753068 Msa0586540:CDS
CTACCACGATGGTATTCAAG+GGG 0.650939 4_2:+7751236 Msa0586540:CDS
ACCGACATAGCAACCAAGTG+CGG 0.651651 4_2:-7753012 None:intergenic
GGTAGCTCATCCCTTACCAA+GGG 0.651702 4_2:+7753417 Msa0586540:three_prime_UTR
GAGCTACAAAGTATTGGCAT+CGG 0.653103 4_2:+7752753 Msa0586540:CDS
GTATGTGCCAAAAGATACAA+GGG 0.653636 4_2:+7753182 Msa0586540:CDS
GGGGAAGATCTCTACCACGA+TGG 0.656662 4_2:+7751225 Msa0586540:CDS
CAGTCTAACACAAAGCGAAG+CGG 0.661953 4_2:+7752479 Msa0586540:CDS
CAATTGTATGAAAACACTAG+AGG 0.679956 4_2:-7752550 None:intergenic
CATCCCCTTGAATACCATCG+TGG 0.740397 4_2:-7751239 None:intergenic
ATAGATACCTAACAACAATG+TGG 0.757923 4_2:-7748549 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTAATTGATTTGTA+AGG + chr4_2:7748424-7748443 Msa0586540:intron 10.0%
!! TAAATCATAAATATAAAGAA+GGG - chr4_2:7748582-7748601 None:intergenic 10.0%
!! ATAAATCATAAATATAAAGA+AGG - chr4_2:7748583-7748602 None:intergenic 10.0%
!! AACAAAGTCTTTATATAAAT+AGG - chr4_2:7748857-7748876 None:intergenic 15.0%
!!! AATTTCATTTTCTTCAAAAA+GGG - chr4_2:7751189-7751208 None:intergenic 15.0%
!!! AAATTTCATTTTCTTCAAAA+AGG - chr4_2:7751190-7751209 None:intergenic 15.0%
!! AAATTTCAAATACAATCAAT+TGG + chr4_2:7751204-7751223 Msa0586540:CDS 15.0%
!! AATTTCAAATACAATCAATT+GGG + chr4_2:7751205-7751224 Msa0586540:CDS 15.0%
!! ATTAAATTAAAACAAGTACA+AGG + chr4_2:7751366-7751385 Msa0586540:intron 15.0%
!! TTAAATTAAAACAAGTACAA+GGG + chr4_2:7751367-7751386 Msa0586540:intron 15.0%
!! CAAAATGAATAAAGAAAATT+TGG - chr4_2:7752356-7752375 None:intergenic 15.0%
!!! TTTCTTTATTCATTTTGTTT+CGG + chr4_2:7752359-7752378 Msa0586540:intron 15.0%
!! TCATCACTTTAATATATAAT+GGG - chr4_2:7752710-7752729 None:intergenic 15.0%
!! TTCATCACTTTAATATATAA+TGG - chr4_2:7752711-7752730 None:intergenic 15.0%
!!! AATATTGTTGTTGATATTAT+GGG - chr4_2:7753576-7753595 None:intergenic 15.0%
!!! AAATATTGTTGTTGATATTA+TGG - chr4_2:7753577-7753596 None:intergenic 15.0%
!!! TATCGATGTTTTTTCAATTA+CGG + chr4_2:7748600-7748619 Msa0586540:intron 20.0%
!!! TTATTATATATCTTCCGTTT+TGG + chr4_2:7748684-7748703 Msa0586540:intron 20.0%
!! AAAAAATAAGTCAATCCAAA+TGG + chr4_2:7749040-7749059 Msa0586540:intron 20.0%
!! AAAAATAAGTCAATCCAAAT+GGG + chr4_2:7749041-7749060 Msa0586540:intron 20.0%
!! TATATAAGCTACTTGAATTA+TGG - chr4_2:7749067-7749086 None:intergenic 20.0%
!!! TGTTTTCAATTAAGATTACA+AGG - chr4_2:7749129-7749148 None:intergenic 20.0%
!!! GTTATTTTAGATTACTCTTT+AGG + chr4_2:7749856-7749875 Msa0586540:intron 20.0%
!!! TCGTATTTTAATTAGATAAC+AGG - chr4_2:7749924-7749943 None:intergenic 20.0%
!! TCTAATTAAAATACGATAAG+TGG + chr4_2:7749928-7749947 Msa0586540:intron 20.0%
!!! TGAATTTTATAACAAAGGAT+AGG - chr4_2:7750167-7750186 None:intergenic 20.0%
!!! TGCAATGAATTTTATAACAA+AGG - chr4_2:7750172-7750191 None:intergenic 20.0%
!! ATTAAGTTATTGATCCTATT+AGG - chr4_2:7750197-7750216 None:intergenic 20.0%
!! ATAGGATCAATAACTTAATT+AGG + chr4_2:7750198-7750217 Msa0586540:intron 20.0%
!!! TGTTAATGAATAATACCTTT+TGG + chr4_2:7750228-7750247 Msa0586540:intron 20.0%
!! AAAACTCATATTGAGTATAT+GGG + chr4_2:7750573-7750592 Msa0586540:intron 20.0%
!! TATATTGATAGGTAAAAAAG+TGG - chr4_2:7750847-7750866 None:intergenic 20.0%
!! ATTTCAAATACAATCAATTG+GGG + chr4_2:7751206-7751225 Msa0586540:CDS 20.0%
!! TAAATTAAAACAAGTACAAG+GGG + chr4_2:7751368-7751387 Msa0586540:intron 20.0%
!!! TTTTTGTAGAGAAAAAGTTT+AGG - chr4_2:7751568-7751587 None:intergenic 20.0%
!!! TTGAAATTGGTTTACTATTA+CGG - chr4_2:7751697-7751716 None:intergenic 20.0%
!! AAAATTGCTTTATATTCCTA+AGG + chr4_2:7751787-7751806 Msa0586540:intron 20.0%
!! CAAATCAACTCTATAAATAT+AGG - chr4_2:7752179-7752198 None:intergenic 20.0%
!!! GACTACTTTTTTTTAGTTAA+AGG + chr4_2:7752281-7752300 Msa0586540:intron 20.0%
!!! AATTCCATTTGTATGATTTT+TGG - chr4_2:7752455-7752474 None:intergenic 20.0%
!! GTAAATAAAATTACATCAAG+TGG + chr4_2:7753053-7753072 Msa0586540:CDS 20.0%
!!! ATATTGTTGTTGATATTATG+GGG - chr4_2:7753575-7753594 None:intergenic 20.0%
!!! CTTTCTTTCTTTGTTTTGAA+AGG - chr4_2:7748190-7748209 None:intergenic 25.0%
! CATAAATACGCTAATTTATG+CGG + chr4_2:7748362-7748381 Msa0586540:intron 25.0%
! ATAAATACGCTAATTTATGC+GGG + chr4_2:7748363-7748382 Msa0586540:intron 25.0%
!! TAAATATAAAGAAGGGTATG+TGG - chr4_2:7748575-7748594 None:intergenic 25.0%
!!! ATCGATGTTTTTTCAATTAC+GGG + chr4_2:7748601-7748620 Msa0586540:intron 25.0%
!!! TATAAAGACTTTGTTTTGCA+AGG + chr4_2:7748862-7748881 Msa0586540:intron 25.0%
! CATTATTCATAAGTTTGTCA+AGG - chr4_2:7748992-7749011 None:intergenic 25.0%
! ACTTATAAGCTAACTTATAG+CGG - chr4_2:7749230-7749249 None:intergenic 25.0%
!! ATTAGCTATTCTAGAAAGTT+TGG - chr4_2:7749279-7749298 None:intergenic 25.0%
!! TCATAGATATAGGTATTGTT+TGG - chr4_2:7749397-7749416 None:intergenic 25.0%
! ATCGATATAGTCATAGATAT+AGG - chr4_2:7749407-7749426 None:intergenic 25.0%
! ATTGAAACAAACTAATGTTG+AGG + chr4_2:7749542-7749561 Msa0586540:CDS 25.0%
!! ACCTATTTCTTCTCTTTAAT+TGG + chr4_2:7749597-7749616 Msa0586540:CDS 25.0%
! TCCAATTAAAGAGAAGAAAT+AGG - chr4_2:7749601-7749620 None:intergenic 25.0%
! ATCATAGTAAGTAATCAACA+TGG + chr4_2:7749684-7749703 Msa0586540:intron 25.0%
! AAATTCATTGCAAACCTAAT+AGG + chr4_2:7750180-7750199 Msa0586540:intron 25.0%
!!! AATTTTGGTGAAAATTGTAC+AGG - chr4_2:7750325-7750344 None:intergenic 25.0%
!! CAATTTTCACCAAAATTTCA+AGG + chr4_2:7750328-7750347 Msa0586540:intron 25.0%
! CAAAACTCATATTGAGTATA+TGG + chr4_2:7750572-7750591 Msa0586540:intron 25.0%
! AAATGACAGAATTATAAGAG+AGG - chr4_2:7750602-7750621 None:intergenic 25.0%
!! CTTTGCTTTCATTTTATGTA+GGG + chr4_2:7750721-7750740 Msa0586540:intron 25.0%
!! TTTGCTTTCATTTTATGTAG+GGG + chr4_2:7750722-7750741 Msa0586540:intron 25.0%
! GAGCTATTAGATATATTGAT+AGG - chr4_2:7750858-7750877 None:intergenic 25.0%
! TCAATATATCTAATAGCTCT+AGG + chr4_2:7750859-7750878 Msa0586540:CDS 25.0%
! ATAAAAGTAGCCATAAATTG+AGG - chr4_2:7750968-7750987 None:intergenic 25.0%
!!! AATTTATGGCTACTTTTATG+TGG + chr4_2:7750969-7750988 Msa0586540:CDS 25.0%
! AAAAGTTCAAGAAAACTACA+AGG + chr4_2:7751647-7751666 Msa0586540:intron 25.0%
!!! CATCAAAGCTTTTTTGAAAT+TGG - chr4_2:7751710-7751729 None:intergenic 25.0%
!! ATAATAACATTGATTGTTGC+TGG + chr4_2:7752789-7752808 Msa0586540:CDS 25.0%
!!! TGAGTTCTTTGAGTATTTTT+TGG + chr4_2:7752862-7752881 Msa0586540:CDS 25.0%
!! ATACCACAATATATGCTTTT+AGG + chr4_2:7752888-7752907 Msa0586540:CDS 25.0%
!! ATTCCTAAAAGCATATATTG+TGG - chr4_2:7752894-7752913 None:intergenic 25.0%
! AAATGACCATCATTTAGATT+AGG - chr4_2:7753104-7753123 None:intergenic 25.0%
! TAAATGATGGTCATTTAGAT+AGG + chr4_2:7753108-7753127 Msa0586540:CDS 25.0%
! TTTATAAGAAGACATGTCAA+TGG + chr4_2:7753395-7753414 Msa0586540:three_prime_UTR 25.0%
! TTATAAGAAGACATGTCAAT+GGG + chr4_2:7753396-7753415 Msa0586540:three_prime_UTR 25.0%
! CTGAAAACTAGTTAAATATG+TGG - chr4_2:7753446-7753465 None:intergenic 25.0%
!!! TCTTTGTTTTGAAAGGATAG+AGG - chr4_2:7748183-7748202 None:intergenic 30.0%
! AGCTAGGTTTTACATATACA+CGG - chr4_2:7748248-7748267 None:intergenic 30.0%
CATTCTTATCAACAATGCAT+AGG - chr4_2:7748287-7748306 None:intergenic 30.0%
! CTATGCATTGTTGATAAGAA+TGG + chr4_2:7748285-7748304 Msa0586540:exon 30.0%
GTATTTATGGTGAATCGAAT+TGG - chr4_2:7748351-7748370 None:intergenic 30.0%
CGCATAAATTAGCGTATTTA+TGG - chr4_2:7748364-7748383 None:intergenic 30.0%
ATCAATTCCTGTACAAAAGA+TGG + chr4_2:7748467-7748486 Msa0586540:CDS 30.0%
TCAATTCCTGTACAAAAGAT+GGG + chr4_2:7748468-7748487 Msa0586540:CDS 30.0%
TGAAAAATAGTTCAGGTAGA+TGG + chr4_2:7748519-7748538 Msa0586540:CDS 30.0%
ATAGATACCTAACAACAATG+TGG - chr4_2:7748552-7748571 None:intergenic 30.0%
GTTTCATCTATCTACCAAAA+CGG - chr4_2:7748701-7748720 None:intergenic 30.0%
GCAAAAATGTCGAAATTGTT+AGG - chr4_2:7748803-7748822 None:intergenic 30.0%
GTTGAACTAGCGTATAAATA+AGG - chr4_2:7749164-7749183 None:intergenic 30.0%
CTCTGTTTGGTAAAAAACAA+CGG - chr4_2:7749256-7749275 None:intergenic 30.0%
TAAATTGTGACAGTGAATCA+AGG + chr4_2:7749459-7749478 Msa0586540:intron 30.0%
! AAACACTTTTAGCATATGGA+TGG + chr4_2:7749569-7749588 Msa0586540:CDS 30.0%
! AACACTTTTAGCATATGGAT+GGG + chr4_2:7749570-7749589 Msa0586540:CDS 30.0%
TTACTATGATGAACACAAGT+TGG - chr4_2:7749674-7749693 None:intergenic 30.0%
TCTTTCGTTAACAGAAGTTT+AGG + chr4_2:7749782-7749801 Msa0586540:intron 30.0%
TCTTTGATTAGAAATGTCAG+TGG + chr4_2:7749979-7749998 Msa0586540:intron 30.0%
TGTTGTTGTGTTTGGTATTT+AGG + chr4_2:7750251-7750270 Msa0586540:intron 30.0%
GTTGTTGTGTTTGGTATTTA+GGG + chr4_2:7750252-7750271 Msa0586540:intron 30.0%
! TACTCGATACCTTGAAATTT+TGG - chr4_2:7750340-7750359 None:intergenic 30.0%
!! ATTTCAAGGTATCGAGTATA+CGG + chr4_2:7750342-7750361 Msa0586540:intron 30.0%
AAAAGAGGATAAAGTGATGT+AGG - chr4_2:7750433-7750452 None:intergenic 30.0%
ATCATAACACACTAACGATT+AGG + chr4_2:7750517-7750536 Msa0586540:intron 30.0%
!! TATGAGTTTTGATAGAGATG+TGG - chr4_2:7750563-7750582 None:intergenic 30.0%
TCATGAAATTAAAGTGTGAG+TGG - chr4_2:7750653-7750672 None:intergenic 30.0%
GCAAAGGAAAATAGAACTTT+AGG - chr4_2:7750707-7750726 None:intergenic 30.0%
CCTACATAAAATGAAAGCAA+AGG - chr4_2:7750723-7750742 None:intergenic 30.0%
! CCTTTGCTTTCATTTTATGT+AGG + chr4_2:7750720-7750739 Msa0586540:intron 30.0%
!! TTTTATGTGGCATTGAACTT+GGG + chr4_2:7750982-7751001 Msa0586540:CDS 30.0%
!!! TCATTTCTTGTTTTGTTGAG+TGG + chr4_2:7751096-7751115 Msa0586540:CDS 30.0%
! TACAGACACTATAAGACTTT+TGG + chr4_2:7751129-7751148 Msa0586540:CDS 30.0%
GTTGTGAAAACTTAGAGAAA+GGG - chr4_2:7751158-7751177 None:intergenic 30.0%
AGTTGTGAAAACTTAGAGAA+AGG - chr4_2:7751159-7751178 None:intergenic 30.0%
TTGTAGAGAAAAAGTTTAGG+CGG - chr4_2:7751565-7751584 None:intergenic 30.0%
CTATACTTGATCAAAACACT+AGG - chr4_2:7751957-7751976 None:intergenic 30.0%
TGATATGATATTCACACTTG+AGG + chr4_2:7751977-7751996 Msa0586540:intron 30.0%
GATATGATATTCACACTTGA+GGG + chr4_2:7751978-7751997 Msa0586540:intron 30.0%
AACTCATTCATAGTCAATGT+AGG - chr4_2:7752037-7752056 None:intergenic 30.0%
AATGAGTTCACTGTTAACAA+AGG + chr4_2:7752049-7752068 Msa0586540:intron 30.0%
ATCCAAAATCTTAGAGCTTT+GGG - chr4_2:7752091-7752110 None:intergenic 30.0%
CTGTTATATAACAGTGAACT+CGG - chr4_2:7752131-7752150 None:intergenic 30.0%
AAGGCCAAAAATCATACAAA+TGG + chr4_2:7752448-7752467 Msa0586540:CDS 30.0%
!!! TTTTGAGAGTGTTACCAATA+TGG + chr4_2:7752511-7752530 Msa0586540:CDS 30.0%
AAGATTGTGCAAAACCATAT+TGG - chr4_2:7752528-7752547 None:intergenic 30.0%
CAATTGTATGAAAACACTAG+AGG - chr4_2:7752553-7752572 None:intergenic 30.0%
AAAATTACATCAAGTGGTCA+AGG + chr4_2:7753059-7753078 Msa0586540:CDS 30.0%
GTTTCACCTAATCTAAATGA+TGG + chr4_2:7753095-7753114 Msa0586540:CDS 30.0%
! TTATATGCCCTTGTATCTTT+TGG - chr4_2:7753192-7753211 None:intergenic 30.0%
! AAGATACAAGGGCATATAAT+TGG + chr4_2:7753193-7753212 Msa0586540:exon 30.0%
TCAAACTACAACTTCCTAAT+TGG - chr4_2:7753237-7753256 None:intergenic 30.0%
TGATTTGATAGAATGACAAG+TGG + chr4_2:7753254-7753273 Msa0586540:three_prime_UTR 30.0%
!! ATTTTTACAGAGCATCAAGA+AGG + chr4_2:7753297-7753316 Msa0586540:three_prime_UTR 30.0%
ATGTCTACAATCAGAAACTA+TGG - chr4_2:7753340-7753359 None:intergenic 30.0%
!! TAAATCTACTGGTTCGTTGT+TGG - chr4_2:7748146-7748165 None:intergenic 35.0%
AACAACGAACCAGTAGATTT+AGG + chr4_2:7748145-7748164 Msa0586540:five_prime_UTR 35.0%
ACAACGAACCAGTAGATTTA+GGG + chr4_2:7748146-7748165 Msa0586540:five_prime_UTR 35.0%
!!! GTTTTGAAAGGATAGAGGAA+GGG - chr4_2:7748178-7748197 None:intergenic 35.0%
!!! TGTTTTGAAAGGATAGAGGA+AGG - chr4_2:7748179-7748198 None:intergenic 35.0%
AGAGAGGTTTATAAGAAGCT+AGG - chr4_2:7748264-7748283 None:intergenic 35.0%
! GCATTGTTGATAAGAATGGA+TGG + chr4_2:7748289-7748308 Msa0586540:exon 35.0%
TTGTAAGGTTGTTGAAGAAG+AGG + chr4_2:7748439-7748458 Msa0586540:intron 35.0%
TGTAAGGTTGTTGAAGAAGA+GGG + chr4_2:7748440-7748459 Msa0586540:intron 35.0%
!! GATGGGTCAGTTGATTTTTA+TGG + chr4_2:7748485-7748504 Msa0586540:CDS 35.0%
!! CCTGAACTATTTTTCAAAGC+TGG - chr4_2:7748515-7748534 None:intergenic 35.0%
!! CCAGCTTTGAAAAATAGTTC+AGG + chr4_2:7748512-7748531 Msa0586540:CDS 35.0%
! TTTTCAATTACGGGTCTGTT+TGG + chr4_2:7748610-7748629 Msa0586540:intron 35.0%
TTAAAACTCACACACACAAG+TGG + chr4_2:7748740-7748759 Msa0586540:intron 35.0%
! ACATTTTTGCCAATTGAGCT+AGG + chr4_2:7748813-7748832 Msa0586540:intron 35.0%
TACTTGAATTATGGCCCATT+TGG - chr4_2:7749058-7749077 None:intergenic 35.0%
! CAGCAAACACTTTTAGCATA+TGG + chr4_2:7749565-7749584 Msa0586540:CDS 35.0%
TTTCTCAGTGACTCATATCT+AGG + chr4_2:7749624-7749643 Msa0586540:CDS 35.0%
GTTGGAATATAATGCAAGTG+AGG - chr4_2:7749656-7749675 None:intergenic 35.0%
TTCGTTAACAGAAGTTTAGG+AGG + chr4_2:7749785-7749804 Msa0586540:intron 35.0%
! TAGGACAAATTTTATGCCAG+TGG + chr4_2:7749875-7749894 Msa0586540:intron 35.0%
!! GCAACAATGGGTTAATCATT+AGG + chr4_2:7750287-7750306 Msa0586540:intron 35.0%
GAAAATTGTACAGGTCTCTT+AGG - chr4_2:7750316-7750335 None:intergenic 35.0%
!! TTTCAAGGTATCGAGTATAC+GGG + chr4_2:7750343-7750362 Msa0586540:intron 35.0%
!! TAGTCTTGATTCGGTTTGAT+GGG - chr4_2:7750460-7750479 None:intergenic 35.0%
!! ATAGTCTTGATTCGGTTTGA+TGG - chr4_2:7750461-7750480 None:intergenic 35.0%
! GTGGTATGATAGTCTTGATT+CGG - chr4_2:7750469-7750488 None:intergenic 35.0%
TCGTTAGTGTGTTATGATTC+TGG - chr4_2:7750515-7750534 None:intergenic 35.0%
CACTAACGATTAGGACAATT+AGG + chr4_2:7750526-7750545 Msa0586540:intron 35.0%
TTGATAGAGATGTGGTATCA+AGG - chr4_2:7750555-7750574 None:intergenic 35.0%
AGTCCATTCCTAATTGTTGT+AGG + chr4_2:7750622-7750641 Msa0586540:intron 35.0%
AGTCCTACAACAATTAGGAA+TGG - chr4_2:7750628-7750647 None:intergenic 35.0%
! TGGTTAGTCCTACAACAATT+AGG - chr4_2:7750633-7750652 None:intergenic 35.0%
! CTTTCATTTTATGTAGGGGT+TGG + chr4_2:7750726-7750745 Msa0586540:intron 35.0%
!! TATCTAATAGCTCTAGGAAG+TGG + chr4_2:7750865-7750884 Msa0586540:CDS 35.0%
ACCTAAAGAACAAAGATCCA+AGG + chr4_2:7750942-7750961 Msa0586540:CDS 35.0%
!! CTTTTATGTGGCATTGAACT+TGG + chr4_2:7750981-7751000 Msa0586540:CDS 35.0%
ATTGGTTGCTGAGACTATAT+TGG + chr4_2:7751008-7751027 Msa0586540:CDS 35.0%
AGAAGAATACACCATGCAAA+TGG + chr4_2:7751273-7751292 Msa0586540:CDS 35.0%
GAAACTAGACCAATCTACAT+TGG - chr4_2:7751394-7751413 None:intergenic 35.0%
!! TGTAGATTGGTCTAGTTTCT+AGG + chr4_2:7751395-7751414 Msa0586540:intron 35.0%
!! GTAGATTGGTCTAGTTTCTA+GGG + chr4_2:7751396-7751415 Msa0586540:intron 35.0%
AAGTTCTCACATTGGCATAT+GGG - chr4_2:7751457-7751476 None:intergenic 35.0%
! TCAATGCTATTTGAGCATTG+AGG + chr4_2:7751503-7751522 Msa0586540:intron 35.0%
TGTAGAGAAAAAGTTTAGGC+GGG - chr4_2:7751564-7751583 None:intergenic 35.0%
! TACGGTTAATAGCTTGTATG+AGG - chr4_2:7751679-7751698 None:intergenic 35.0%
! TATTCCTAAGGCCTTGATTT+TGG + chr4_2:7751799-7751818 Msa0586540:intron 35.0%
TCAAATCTCCACCAAAATCA+AGG - chr4_2:7751813-7751832 None:intergenic 35.0%
ATCAAAATCACCAAAAGACC+TGG - chr4_2:7751839-7751858 None:intergenic 35.0%
!! TCTTAGAGCTTTGGGAATAT+GGG - chr4_2:7752083-7752102 None:intergenic 35.0%
!! ATCTTAGAGCTTTGGGAATA+TGG - chr4_2:7752084-7752103 None:intergenic 35.0%
!!! TTCCCAAAGCTCTAAGATTT+TGG + chr4_2:7752086-7752105 Msa0586540:intron 35.0%
CATCCAAAATCTTAGAGCTT+TGG - chr4_2:7752092-7752111 None:intergenic 35.0%
TTATATAACAGTGAACTCGG+CGG - chr4_2:7752128-7752147 None:intergenic 35.0%
TATGGCTAACAAGAATGGAA+TGG - chr4_2:7752231-7752250 None:intergenic 35.0%
GATTGTATGGCTAACAAGAA+TGG - chr4_2:7752236-7752255 None:intergenic 35.0%
ACAACTTGCAACAGATTGTA+TGG - chr4_2:7752249-7752268 None:intergenic 35.0%
AGTTAAAGGATACAAACACG+AGG + chr4_2:7752295-7752314 Msa0586540:intron 35.0%
GCTCTATCAAAAAACCTGTA+TGG - chr4_2:7752387-7752406 None:intergenic 35.0%
!!! TACAGGTTTTTTGATAGAGC+TGG + chr4_2:7752387-7752406 Msa0586540:intron 35.0%
ACTGAGATGTTACTAGGTAA+AGG + chr4_2:7752429-7752448 Msa0586540:CDS 35.0%
! CTTTCTCTATTTGTTGAGCA+AGG + chr4_2:7752573-7752592 Msa0586540:CDS 35.0%
! TTAAGTTTTGCCAGCAATGA+TGG + chr4_2:7752831-7752850 Msa0586540:CDS 35.0%
TGTATGTGCCAAAAGATACA+AGG + chr4_2:7753181-7753200 Msa0586540:CDS 35.0%
GTATGTGCCAAAAGATACAA+GGG + chr4_2:7753182-7753201 Msa0586540:CDS 35.0%
AAGAGAAGAAGCAACCAATT+AGG + chr4_2:7753220-7753239 Msa0586540:three_prime_UTR 35.0%
TGGAGAATGAGATTGCAATA+GGG - chr4_2:7753538-7753557 None:intergenic 35.0%
TTGGAGAATGAGATTGCAAT+AGG - chr4_2:7753539-7753558 None:intergenic 35.0%
ATGGGGAAAAAACAAAGAGT+TGG - chr4_2:7753558-7753577 None:intergenic 35.0%
ATCAACAATGCATAGGAGAG+AGG - chr4_2:7748280-7748299 None:intergenic 40.0%
CGAACAAGATTTAACGTCTC+AGG + chr4_2:7748315-7748334 Msa0586540:CDS 40.0%
GTAAGGTTGTTGAAGAAGAG+GGG + chr4_2:7748441-7748460 Msa0586540:intron 40.0%
! AACTGACCCATCTTTTGTAC+AGG - chr4_2:7748477-7748496 None:intergenic 40.0%
!! AGAAGTGCCACATTGTTGTT+AGG + chr4_2:7748542-7748561 Msa0586540:CDS 40.0%
TTATGAGATTGCGGGTTTGT+TGG + chr4_2:7748651-7748670 Msa0586540:intron 40.0%
! TATGAGATTGCGGGTTTGTT+GGG + chr4_2:7748652-7748671 Msa0586540:intron 40.0%
GTTAGGTCAAACATTGTGAC+AGG - chr4_2:7748786-7748805 None:intergenic 40.0%
!! CTAGAAAGTTTGGCTCTGTT+TGG - chr4_2:7749269-7749288 None:intergenic 40.0%
TATCTAAACTTGTGATGCGC+AGG - chr4_2:7749823-7749842 None:intergenic 40.0%
TTAGTACTCCACTACTCCTT+TGG + chr4_2:7750042-7750061 Msa0586540:intron 40.0%
TATTCCAGAGAGTTGAGTGA+GGG - chr4_2:7750071-7750090 None:intergenic 40.0%
ATATTCCAGAGAGTTGAGTG+AGG - chr4_2:7750072-7750091 None:intergenic 40.0%
CCAAACACAACAACACCAAA+AGG - chr4_2:7750246-7750265 None:intergenic 40.0%
!!! CCTTTTGGTGTTGTTGTGTT+TGG + chr4_2:7750243-7750262 Msa0586540:intron 40.0%
TTGGTATTTAGGGAGAACAC+CGG + chr4_2:7750262-7750281 Msa0586540:intron 40.0%
!! TTCAAGGTATCGAGTATACG+GGG + chr4_2:7750344-7750363 Msa0586540:intron 40.0%
TAAAGTGATGTAGGAGACTC+AGG - chr4_2:7750424-7750443 None:intergenic 40.0%
! TCATTTTATGTAGGGGTTGG+TGG + chr4_2:7750729-7750748 Msa0586540:intron 40.0%
CCTATTTGTTCACAACGATG+TGG - chr4_2:7750790-7750809 None:intergenic 40.0%
CCACATCGTTGTGAACAAAT+AGG + chr4_2:7750787-7750806 Msa0586540:CDS 40.0%
GCCTTGGATCTTTGTTCTTT+AGG - chr4_2:7750946-7750965 None:intergenic 40.0%
AGATCCAAGGCCTCAATTTA+TGG + chr4_2:7750955-7750974 Msa0586540:CDS 40.0%
TTGGCTTACATAGAGACTAC+AGG + chr4_2:7751027-7751046 Msa0586540:CDS 40.0%
ACATAGAGACTACAGGACAT+TGG + chr4_2:7751034-7751053 Msa0586540:CDS 40.0%
CATAGAGACTACAGGACATT+GGG + chr4_2:7751035-7751054 Msa0586540:CDS 40.0%
TCTACCACGATGGTATTCAA+GGG + chr4_2:7751235-7751254 Msa0586540:CDS 40.0%
GATTCAACTCAGATCTCACA+AGG + chr4_2:7751418-7751437 Msa0586540:intron 40.0%
GAAGTTCTCACATTGGCATA+TGG - chr4_2:7751458-7751477 None:intergenic 40.0%
TGCCAATGTGAGAACTTCAT+TGG + chr4_2:7751460-7751479 Msa0586540:intron 40.0%
AGAAAAAGTTTAGGCGGGAT+GGG - chr4_2:7751559-7751578 None:intergenic 40.0%
GCTATGATACCCACTTGTTT+AGG - chr4_2:7751899-7751918 None:intergenic 40.0%
!! ATCATAGCCTTGTTTCGACT+TGG + chr4_2:7751911-7751930 Msa0586540:intron 40.0%
GTTCACTGTTAACAAAGGTG+AGG + chr4_2:7752054-7752073 Msa0586540:intron 40.0%
TATATAACAGTGAACTCGGC+GGG - chr4_2:7752127-7752146 None:intergenic 40.0%
!!! ATTTTGTTTCGGTGCCATAC+AGG + chr4_2:7752370-7752389 Msa0586540:intron 40.0%
!! AGCTGGTATTGTTTCTGATG+AGG + chr4_2:7752404-7752423 Msa0586540:CDS 40.0%
TGTTGAGCAAGGTTCTACAA+TGG + chr4_2:7752584-7752603 Msa0586540:CDS 40.0%
TCAAATGCTGTCATGCTTGA+AGG - chr4_2:7752639-7752658 None:intergenic 40.0%
GATGCCAATACTTTGTAGCT+CGG - chr4_2:7752754-7752773 None:intergenic 40.0%
!! GAGCTACAAAGTATTGGCAT+CGG + chr4_2:7752753-7752772 Msa0586540:CDS 40.0%
CATCTCTTTACCATCATTGC+TGG - chr4_2:7752844-7752863 None:intergenic 40.0%
! TCTATGTTTTCATCCGCACT+TGG + chr4_2:7752999-7753018 Msa0586540:CDS 40.0%
! CGGTAACATTTTTCTGACTG+TGG + chr4_2:7753031-7753050 Msa0586540:CDS 40.0%
GATAGAATGACAAGTGGAGT+TGG + chr4_2:7753260-7753279 Msa0586540:three_prime_UTR 40.0%
! TCCTGTTTCTCTCAGATCAT+TGG + chr4_2:7753505-7753524 Msa0586540:three_prime_UTR 40.0%
ACCAATGATCTGAGAGAAAC+AGG - chr4_2:7753509-7753528 None:intergenic 40.0%
!! TCGTTGTTGGTTTGGTTGGT+AGG - chr4_2:7748133-7748152 None:intergenic 45.0%
!! TGGTTCGTTGTTGGTTTGGT+TGG - chr4_2:7748137-7748156 None:intergenic 45.0%
!! CTACTGGTTCGTTGTTGGTT+TGG - chr4_2:7748141-7748160 None:intergenic 45.0%
TTCGAGCGCTTATGAGATTG+CGG + chr4_2:7748642-7748661 Msa0586540:intron 45.0%
TCTGCATGTCCTAGCTCAAT+TGG - chr4_2:7748825-7748844 None:intergenic 45.0%
TGTGACAGTGAATCAAGGAC+TGG + chr4_2:7749464-7749483 Msa0586540:intron 45.0%
AACTTGTGATGCGCAGGAAT+GGG - chr4_2:7749817-7749836 None:intergenic 45.0%
AAACTTGTGATGCGCAGGAA+TGG - chr4_2:7749818-7749837 None:intergenic 45.0%
GAGGTGGAGAGTTCAAAACT+TGG - chr4_2:7750018-7750037 None:intergenic 45.0%
! GTAGTGGAGTACTAATGAGG+AGG - chr4_2:7750037-7750056 None:intergenic 45.0%
! GGAGTAGTGGAGTACTAATG+AGG - chr4_2:7750040-7750059 None:intergenic 45.0%
TGGTATTTAGGGAGAACACC+GGG + chr4_2:7750263-7750282 Msa0586540:intron 45.0%
GATTAACCCATTGTTGCTCC+CGG - chr4_2:7750284-7750303 None:intergenic 45.0%
GGTTGACATTCAAGTGTGAG+TGG - chr4_2:7750387-7750406 None:intergenic 45.0%
GATGTAGGAGACTCAGGATT+GGG - chr4_2:7750418-7750437 None:intergenic 45.0%
TGATGTAGGAGACTCAGGAT+TGG - chr4_2:7750419-7750438 None:intergenic 45.0%
! GGTTTGATGGGTAGCAAAAG+AGG - chr4_2:7750448-7750467 None:intergenic 45.0%
CGCTAAAACTCTGCAACAAG+TGG - chr4_2:7750488-7750507 None:intergenic 45.0%
AATTGATCAGCGCCAAGTGT+TGG - chr4_2:7750910-7750929 None:intergenic 45.0%
!! TGGCGCTGATCAATTTGATG+AGG + chr4_2:7750915-7750934 Msa0586540:CDS 45.0%
GTAGCCATAAATTGAGGCCT+TGG - chr4_2:7750962-7750981 None:intergenic 45.0%
! GGCATTGAACTTGGGATCAT+TGG + chr4_2:7750990-7751009 Msa0586540:CDS 45.0%
CTCTACCACGATGGTATTCA+AGG + chr4_2:7751234-7751253 Msa0586540:CDS 45.0%
CTACCACGATGGTATTCAAG+GGG + chr4_2:7751236-7751255 Msa0586540:CDS 45.0%
GTTCTTAAGAGACGTACCTG+AGG - chr4_2:7751299-7751318 None:intergenic 45.0%
TACAAGGGGCCAATGTAGAT+TGG + chr4_2:7751382-7751401 Msa0586540:intron 45.0%
ACTCAGATCTCACAAGGATC+TGG + chr4_2:7751424-7751443 Msa0586540:intron 45.0%
CTCAGATCTCACAAGGATCT+GGG + chr4_2:7751425-7751444 Msa0586540:intron 45.0%
CGCCAATGAAGTTCTCACAT+TGG - chr4_2:7751465-7751484 None:intergenic 45.0%
GAAAAAGTTTAGGCGGGATG+GGG - chr4_2:7751558-7751577 None:intergenic 45.0%
GAGAAAAAGTTTAGGCGGGA+TGG - chr4_2:7751560-7751579 None:intergenic 45.0%
! TCCTAAGGCCTTGATTTTGG+TGG + chr4_2:7751802-7751821 Msa0586540:intron 45.0%
TCCACCAAAATCAAGGCCTT+AGG - chr4_2:7751806-7751825 None:intergenic 45.0%
! GATTTGACGTCCAGGTCTTT+TGG + chr4_2:7751826-7751845 Msa0586540:intron 45.0%
CCACTTGTTTAGGAGTTCAG+GGG - chr4_2:7751889-7751908 None:intergenic 45.0%
CCCACTTGTTTAGGAGTTCA+GGG - chr4_2:7751890-7751909 None:intergenic 45.0%
CCCTGAACTCCTAAACAAGT+GGG + chr4_2:7751887-7751906 Msa0586540:intron 45.0%
ACCCACTTGTTTAGGAGTTC+AGG - chr4_2:7751891-7751910 None:intergenic 45.0%
TCTCACACCAAGTCGAAACA+AGG - chr4_2:7751921-7751940 None:intergenic 45.0%
GAGGCAACTGAGATGTTACT+AGG + chr4_2:7752423-7752442 Msa0586540:CDS 45.0%
CAGTCTAACACAAAGCGAAG+CGG + chr4_2:7752479-7752498 Msa0586540:CDS 45.0%
ATGCTGTCATGCTTGAAGGA+GGG - chr4_2:7752635-7752654 None:intergenic 45.0%
AATGCTGTCATGCTTGAAGG+AGG - chr4_2:7752636-7752655 None:intergenic 45.0%
! TGTAGCTCGGTAGGAAGTTT+TGG - chr4_2:7752741-7752760 None:intergenic 45.0%
CCAATACTTTGTAGCTCGGT+AGG - chr4_2:7752750-7752769 None:intergenic 45.0%
CCTACCGAGCTACAAAGTAT+TGG + chr4_2:7752747-7752766 Msa0586540:CDS 45.0%
TTCACGTCACAAACTCCAGA+TGG + chr4_2:7752951-7752970 Msa0586540:CDS 45.0%
GTCACAAACTCCAGATGGTT+TGG + chr4_2:7752956-7752975 Msa0586540:CDS 45.0%
! TCCAGATGGTTTGGAAAGCT+TGG + chr4_2:7752965-7752984 Msa0586540:CDS 45.0%
! CCAGATGGTTTGGAAAGCTT+GGG + chr4_2:7752966-7752985 Msa0586540:CDS 45.0%
! TGGTTTGGAAAGCTTGGGAA+TGG + chr4_2:7752971-7752990 Msa0586540:CDS 45.0%
GGTTTGGAAAGCTTGGGAAT+GGG + chr4_2:7752972-7752991 Msa0586540:CDS 45.0%
GTTTGGAAAGCTTGGGAATG+GGG + chr4_2:7752973-7752992 Msa0586540:CDS 45.0%
TCAAGTGGTCAAGGTCAACA+TGG + chr4_2:7753068-7753087 Msa0586540:CDS 45.0%
TGGTCAAGGTCAACATGGTT+GGG + chr4_2:7753073-7753092 Msa0586540:CDS 45.0%
CAAGAAGGATGTCCTGACTT+TGG + chr4_2:7753312-7753331 Msa0586540:three_prime_UTR 45.0%
GAAACTATGGCACCAAAGTC+AGG - chr4_2:7753327-7753346 None:intergenic 45.0%
GTTAAATATGTGGCCACCCT+TGG - chr4_2:7753436-7753455 None:intergenic 45.0%
!!! TTTAAAGAATTTTTTTTATA+AGG - chr4_2:7752327-7752346 None:intergenic 5.0%
GGAAGACGCCCTAAATCTAC+TGG - chr4_2:7748157-7748176 None:intergenic 50.0%
TCGAGCGCTTATGAGATTGC+GGG + chr4_2:7748643-7748662 Msa0586540:intron 50.0%
GTGACAGGAGTTCAAACCTC+CGG - chr4_2:7748771-7748790 None:intergenic 50.0%
!! GAATCAAGGACTGGTTGCAG+TGG + chr4_2:7749473-7749492 Msa0586540:CDS 50.0%
ACTTGTGATGCGCAGGAATG+GGG - chr4_2:7749816-7749835 None:intergenic 50.0%
TGCCAGTGGCTCAATGCTTT+AGG + chr4_2:7749889-7749908 Msa0586540:intron 50.0%
!! CACCTAAAGCATTGAGCCAC+TGG - chr4_2:7749894-7749913 None:intergenic 50.0%
! GTGGAGTACTAATGAGGAGG+TGG - chr4_2:7750034-7750053 None:intergenic 50.0%
AGTTGAGTGAGGGACACCAA+AGG - chr4_2:7750061-7750080 None:intergenic 50.0%
AGAACACCGGGAGCAACAAT+GGG + chr4_2:7750275-7750294 Msa0586540:intron 50.0%
TAGGAGACTCAGGATTGGGA+GGG - chr4_2:7750414-7750433 None:intergenic 50.0%
GACCCTGCATTACCAACACT+TGG + chr4_2:7750895-7750914 Msa0586540:CDS 50.0%
!! CGCCAAGTGTTGGTAATGCA+GGG - chr4_2:7750900-7750919 None:intergenic 50.0%
ACTACAGGACATTGGGTGCT+TGG + chr4_2:7751042-7751061 Msa0586540:CDS 50.0%
GACATTGGGTGCTTGGATTC+TGG + chr4_2:7751049-7751068 Msa0586540:CDS 50.0%
CATCCCCTTGAATACCATCG+TGG - chr4_2:7751242-7751261 None:intergenic 50.0%
TACACCATGCAAATGGCCTC+AGG + chr4_2:7751280-7751299 Msa0586540:CDS 50.0%
TTGGTGGAGATTTGACGTCC+AGG + chr4_2:7751818-7751837 Msa0586540:intron 50.0%
CCCCTGAACTCCTAAACAAG+TGG + chr4_2:7751886-7751905 Msa0586540:intron 50.0%
!! ACTTGGTGTGAGAGCGTTAG+TGG + chr4_2:7751928-7751947 Msa0586540:intron 50.0%
!! CACTTGAGGGCGAGTTTTGT+TGG + chr4_2:7751991-7752010 Msa0586540:intron 50.0%
CCCAAGCTTTCCAAACCATC+TGG - chr4_2:7752969-7752988 None:intergenic 50.0%
TCCGCACTTGGTTGCTATGT+CGG + chr4_2:7753011-7753030 Msa0586540:CDS 50.0%
ACCGACATAGCAACCAAGTG+CGG - chr4_2:7753015-7753034 None:intergenic 50.0%
GTGGTCAAGGTCAACATGGT+TGG + chr4_2:7753072-7753091 Msa0586540:CDS 50.0%
GGTAGCTCATCCCTTACCAA+GGG + chr4_2:7753417-7753436 Msa0586540:three_prime_UTR 50.0%
TATGTGGCCACCCTTGGTAA+GGG - chr4_2:7753430-7753449 None:intergenic 50.0%
ATATGTGGCCACCCTTGGTA+AGG - chr4_2:7753431-7753450 None:intergenic 50.0%
ACACACACAAGTGGACGAGC+CGG + chr4_2:7748749-7748768 Msa0586540:intron 55.0%
CGCAGGAGTGGAGGCAAATT+TGG + chr4_2:7749500-7749519 Msa0586540:CDS 55.0%
GAGGGACACCAAAGGAGTAG+TGG - chr4_2:7750053-7750072 None:intergenic 55.0%
GTGTCCCTCACTCAACTCTC+TGG + chr4_2:7750064-7750083 Msa0586540:intron 55.0%
GAGAACACCGGGAGCAACAA+TGG + chr4_2:7750274-7750293 Msa0586540:intron 55.0%
ACTCAGGATTGGGAGGGAGA+TGG - chr4_2:7750408-7750427 None:intergenic 55.0%
GTAGGAGACTCAGGATTGGG+AGG - chr4_2:7750415-7750434 None:intergenic 55.0%
!! GCGCCAAGTGTTGGTAATGC+AGG - chr4_2:7750901-7750920 None:intergenic 55.0%
GGGGAAGATCTCTACCACGA+TGG + chr4_2:7751225-7751244 Msa0586540:CDS 55.0%
CGTACCTGAGGCCATTTGCA+TGG - chr4_2:7751287-7751306 None:intergenic 55.0%
GGGTAGCTCATCCCTTACCA+AGG + chr4_2:7753416-7753435 Msa0586540:three_prime_UTR 55.0%
AGCTCATCCCTTACCAAGGG+TGG + chr4_2:7753420-7753439 Msa0586540:three_prime_UTR 55.0%
CTGGTTGCAGTGGCTTTCGC+AGG + chr4_2:7749483-7749502 Msa0586540:CDS 60.0%
TGCAGTGGCTTTCGCAGGAG+TGG + chr4_2:7749488-7749507 Msa0586540:CDS 60.0%
AGTGGCTTTCGCAGGAGTGG+AGG + chr4_2:7749491-7749510 Msa0586540:CDS 60.0%
! CTGGGGGCACATCAGGACTA+GGG - chr4_2:7751533-7751552 None:intergenic 60.0%
TTTAGGCGGGATGGGGTCCT+GGG - chr4_2:7751551-7751570 None:intergenic 60.0%
CACACAAGTGGACGAGCCGG+AGG + chr4_2:7748752-7748771 Msa0586540:intron 65.0%
! CCTGGGGGCACATCAGGACT+AGG - chr4_2:7751534-7751553 None:intergenic 65.0%
CCTAGTCCTGATGTGCCCCC+AGG + chr4_2:7751531-7751550 Msa0586540:intron 65.0%
TTAGGCGGGATGGGGTCCTG+GGG - chr4_2:7751550-7751569 None:intergenic 65.0%
GTTTAGGCGGGATGGGGTCC+TGG - chr4_2:7751552-7751571 None:intergenic 65.0%
! TGGGGTCCTGGGGGCACATC+AGG - chr4_2:7751540-7751559 None:intergenic 70.0%
TAGGCGGGATGGGGTCCTGG+GGG - chr4_2:7751549-7751568 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 7748118 7753611 7748118 ID=Msa0586540;Name=Msa0586540
chr4_2 mRNA 7748118 7753611 7748118 ID=Msa0586540-mRNA-1;Parent=Msa0586540;Name=Msa0586540-mRNA-1;_AED=0.02;_eAED=0.02;_QI=186|1|1|1|1|1|5|400|582
chr4_2 exon 7748118 7748336 7748118 ID=Msa0586540-mRNA-1:exon:2017;Parent=Msa0586540-mRNA-1
chr4_2 exon 7748446 7748563 7748446 ID=Msa0586540-mRNA-1:exon:2018;Parent=Msa0586540-mRNA-1
chr4_2 exon 7749472 7749689 7749472 ID=Msa0586540-mRNA-1:exon:2019;Parent=Msa0586540-mRNA-1
chr4_2 exon 7750742 7751301 7750742 ID=Msa0586540-mRNA-1:exon:2020;Parent=Msa0586540-mRNA-1
chr4_2 exon 7752392 7753611 7752392 ID=Msa0586540-mRNA-1:exon:2021;Parent=Msa0586540-mRNA-1
chr4_2 five_prime_UTR 7748118 7748303 7748118 ID=Msa0586540-mRNA-1:five_prime_utr;Parent=Msa0586540-mRNA-1
chr4_2 CDS 7748304 7748336 7748304 ID=Msa0586540-mRNA-1:cds;Parent=Msa0586540-mRNA-1
chr4_2 CDS 7748446 7748563 7748446 ID=Msa0586540-mRNA-1:cds;Parent=Msa0586540-mRNA-1
chr4_2 CDS 7749472 7749689 7749472 ID=Msa0586540-mRNA-1:cds;Parent=Msa0586540-mRNA-1
chr4_2 CDS 7750742 7751301 7750742 ID=Msa0586540-mRNA-1:cds;Parent=Msa0586540-mRNA-1
chr4_2 CDS 7752392 7753211 7752392 ID=Msa0586540-mRNA-1:cds;Parent=Msa0586540-mRNA-1
chr4_2 three_prime_UTR 7753212 7753611 7753212 ID=Msa0586540-mRNA-1:three_prime_utr;Parent=Msa0586540-mRNA-1
Gene Sequence

>Msa0586540

ATGGATGGAAACGAACAAGATTTAACGTCTCAGGTTGTTGAAGAAGAGGGGAGTATCAATTCCTGTACAAAAGATGGGTCAGTTGATTTTTATGGAAAACCAGCTTTGAAAAATAGTTCAGGTAGATGGAGAAGTGCCACATTGTTGTTAGTGAATCAAGGACTGGTTGCAGTGGCTTTCGCAGGAGTGGAGGCAAATTTGGTTATTTTCTGCAAATTAGTATTGAAACAAACTAATGTTGAGGCAGCAAACACTTTTAGCATATGGATGGGAACTACCTATTTCTTCTCTTTAATTGGAGCTTTTCTCAGTGACTCATATCTAGGAAGATACCTCACTTGCATTATATTCCAACTTGTGTTCATCATAGGGTTGGTGGCGTTATCTTTGTCAACTCACTTCTTTTTACTCAAACCACATCGTTGTGAACAAATAGGAGAGTTATGTGAATCAGATACACAAAATCAGTTTCCACTTTTTTACCTATCAATATATCTAATAGCTCTAGGAAGTGGAGTTTCTGACCCTGCATTACCAACACTTGGCGCTGATCAATTTGATGAGGAAGAACCTAAAGAACAAAGATCCAAGGCCTCAATTTATGGCTACTTTTATGTGGCATTGAACTTGGGATCATTGGTTGCTGAGACTATATTGGCTTACATAGAGACTACAGGACATTGGGTGCTTGGATTCTGGATATGTACAAGTTGTGCAGCTGTTTCATTTCTTGTTTTGTTGAGTGGAACTCTTAGATACAGACACTATAAGACTTTTGGAAACCCTTTCTCTAAGTTTTCACAACTGATTGTACCCTTTTTGAAGAAAATGAAATTTCAAATACAATCAATTGGGGAAGATCTCTACCACGATGGTATTCAAGGGGATGATACTCGTGTTAGAAGAATACACCATGCAAATGGCCTCAGGTTTTTTGATAGAGCTGGTATTGTTTCTGATGAGGCAACTGAGATGTTACTAGGTAAAGGCCAAAAATCATACAAATGGAATTTTAACAGTCTAACACAAAGCGAAGCGGTGACATATATTTTGAGAGTGTTACCAATATGGTTTTGCACAATCTTCTCCTCTAGTGTTTTCATACAATTGCTTTCTCTATTTGTTGAGCAAGGTTCTACAATGGACAGAACATTTTTCAAGTTTCAGATCCCTCCTTCAAGCATGACAGCATTTGATATCATAAGCACATCAACATTTATCATATTACTCGACGTTCTTATTATCCCATTATATATTAAAGTGATGAAAAGATCTCCAAAACTTCCTACCGAGCTACAAAGTATTGGCATCGGACTCAGCATTACAATAATAACATTGATTGTTGCTGGTTTTGTAGAGCAGAGAAGATTAAGTTTTGCCAGCAATGATGGTAAAGAGATGAGTTCTTTGAGTATTTTTTGGTTGATACCACAATATATGCTTTTAGGAATAGCAGAAGCTTTTGTGTATGTAGCACAGATGAACTTTTTCACGTCACAAACTCCAGATGGTTTGGAAAGCTTGGGAATGGGGTTGTCTATGTTTTCATCCGCACTTGGTTGCTATGTCGGTAACATTTTTCTGACTGTGGTAAATAAAATTACATCAAGTGGTCAAGGTCAACATGGTTGGGTTTCACCTAATCTAAATGATGGTCATTTAGATAGGTTTTTCTTCTTGACAGCATTTCTAATTGCTATTGACTTGATTGTGTATATTGTATGTGCCAAAAGATACAAGGGCATATAA
Protein sequence

>Msa0586540

MDGNEQDLTSQVVEEEGSINSCTKDGSVDFYGKPALKNSSGRWRSATLLLVNQGLVAVAFAGVEANLVIFCKLVLKQTNVEAANTFSIWMGTTYFFSLIGAFLSDSYLGRYLTCIIFQLVFIIGLVALSLSTHFFLLKPHRCEQIGELCESDTQNQFPLFYLSIYLIALGSGVSDPALPTLGADQFDEEEPKEQRSKASIYGYFYVALNLGSLVAETILAYIETTGHWVLGFWICTSCAAVSFLVLLSGTLRYRHYKTFGNPFSKFSQLIVPFLKKMKFQIQSIGEDLYHDGIQGDDTRVRRIHHANGLRFFDRAGIVSDEATEMLLGKGQKSYKWNFNSLTQSEAVTYILRVLPIWFCTIFSSSVFIQLLSLFVEQGSTMDRTFFKFQIPPSSMTAFDIISTSTFIILLDVLIIPLYIKVMKRSPKLPTELQSIGIGLSITIITLIVAGFVEQRRLSFASNDGKEMSSLSIFWLIPQYMLLGIAEAFVYVAQMNFFTSQTPDGLESLGMGLSMFSSALGCYVGNIFLTVVNKITSSGQGQHGWVSPNLNDGHLDRFFFLTAFLIAIDLIVYIVCAKRYKGI*