AlfalfaGEDB | Msa0671600

M. sativa cultivar zhongmu-4 / Msa0671600

KEGG: K14638
GO: GO:0001101 GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006820 GO:0007275 GO:0007568 GO:0008150 GO:0008324 GO:0008509 GO:0009987 GO:0010035 GO:0010150 GO:0010167 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015103 GO:0015112 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015386 GO:0015491 GO:0015672 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0044464 GO:0046873 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071705 GO:0071804 GO:0071805 GO:0071944 GO:0090693 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098771 GO:0099402 GO:0099516 GO:1901698 GO:1901700 GO:1902600
PFAM: PF00854.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0671600	XP_024638218.1	97.595	582	13	1	1	582	1	581	0.0	1157

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0671600	sp\|Q9LQL2\|PTR14_ARATH	46.939	588	292	7	4	582	8	584	6.34e-178	519

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0671600	A0A396I0T1	97.595	582	13	1	1	582	1	581	0.0	1157

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0671600	-0.837617	4.676115e-57	-8.615850e-47
Msa0010020	Msa0671600	0.807643	4.573687e-50	-8.615850e-47
Msa0027580	Msa0671600	0.802916	4.469466e-49	-8.615850e-47
Msa0049400	Msa0671600	-0.801191	1.011608e-48	-8.615850e-47
Msa0075340	Msa0671600	0.802481	5.497716e-49	-8.615850e-47
Msa0172350	Msa0671600	0.818598	1.803054e-52	-8.615850e-47
Msa0227400	Msa0671600	0.814467	1.518364e-51	-8.615850e-47
Msa0239940	Msa0671600	0.809218	2.109836e-50	-8.615850e-47
Msa0267760	Msa0671600	0.810157	1.325251e-50	-8.615850e-47
Msa0275400	Msa0671600	-0.813954	1.970103e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0671600	MtrunA17_Chr4g0011041	97.595	582	13	1	1	582	1	581	0.0	1157
Msa0671600	MtrunA17_Chr4g0011471	68.421	532	166	2	51	582	30	559	0.0	723
Msa0671600	MtrunA17_Chr5g0400371	47.270	586	302	4	1	582	76	658	0.0	530
Msa0671600	MtrunA17_Chr4g0054891	48.663	561	282	4	23	582	96	651	0.0	528
Msa0671600	MtrunA17_Chr7g0217461	46.903	565	290	4	22	580	9	569	2.72e-175	509
Msa0671600	MtrunA17_Chr7g0214461	43.038	553	302	7	32	582	73	614	2.36e-150	446
Msa0671600	MtrunA17_Chr1g0213711	41.065	582	318	6	1	582	1	557	4.94e-148	439
Msa0671600	MtrunA17_Chr7g0218851	43.423	555	299	8	32	582	41	584	6.58e-142	424
Msa0671600	MtrunA17_Chr8g0375311	36.565	588	351	8	2	580	6	580	4.54e-131	395
Msa0671600	MtrunA17_Chr8g0375351	35.304	575	359	6	11	580	14	580	3.25e-125	380

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0671600	AT1G32450.1	46.939	588	292	7	4	582	8	584	6.45e-179	519
Msa0671600	AT4G21680.1	46.831	568	290	5	22	582	11	573	1.00e-167	490
Msa0671600	AT5G19640.1	41.217	575	314	7	11	582	31	584	1.27e-147	439
Msa0671600	AT2G02040.1	36.637	565	341	7	23	580	25	579	8.73e-128	387
Msa0671600	AT1G62200.1	34.932	584	366	8	1	580	13	586	6.13e-121	370
Msa0671600	AT3G54140.1	35.993	564	345	9	23	580	8	561	1.23e-119	366
Msa0671600	AT3G54140.2	35.993	564	345	9	23	580	8	561	1.23e-119	366
Msa0671600	AT5G01180.2	35.346	563	347	10	23	579	9	560	3.38e-116	357
Msa0671600	AT5G01180.3	35.346	563	347	10	23	579	9	560	3.38e-116	357
Msa0671600	AT5G01180.1	35.346	563	347	10	23	579	9	560	3.38e-116	357

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Find 132 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACTTTGTAGCTCGGT+AGG	0.505762	4_4:-15321570	None:intergenic
AAAATTACATCAAGTGGTCA+AGG	0.554424	4_4:+15321882	Msa0671600:CDS
AAATATTGTTGTTGATATTG+TGG	0.506203	4_4:-15322387	None:intergenic
AAATCTACTGGTTCGTATGT+TGG	0.456113	4_4:-15317010	None:intergenic
AAATGACCATCATTTAGATT+AGG	0.434159	4_4:-15321924	None:intergenic
AAATTTCAAATACAATCAAT+TGG	0.357133	4_4:+15320027	Msa0671600:CDS
AAGATACAAGGGCATATAAT+TGG	0.269835	4_4:+15322016	Msa0671600:exon
AAGATTGTGCAAAACCATAT+TGG	0.420486	4_4:-15321348	None:intergenic
AATATTGTTGTTGATATTGT+GGG	0.466106	4_4:-15322386	None:intergenic
AATGCTGTCATGCTTGAAGG+AGG	0.601186	4_4:-15321456	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATTCTTATCAACAATGCAT+AGG	-	chr4_4:15317151-15317170	None:intergenic	30.0%
GTATATATGGTGAATCGAAT+TGG	-	chr4_4:15317215-15317234	None:intergenic	30.0%
CGCATAAATTAGCGTATATA+TGG	-	chr4_4:15317228-15317247	None:intergenic	30.0%
ATCAATTCCTGTACAAAAGA+TGG	+	chr4_4:15317331-15317350	Msa0671600:CDS	30.0%
TCAATTCCTGTACAAAAGAT+GGG	+	chr4_4:15317332-15317351	Msa0671600:CDS	30.0%
TGAAAAATAGTTCAGGTAGA+TGG	+	chr4_4:15317383-15317402	Msa0671600:CDS	30.0%
ATAGATACCTAACAACAATG+TGG	-	chr4_4:15317416-15317435	None:intergenic	30.0%
GTTTCATCTATCTACCAAAA+CGG	-	chr4_4:15317565-15317584	None:intergenic	30.0%
GCAAAAATGTCGAAATTGTT+AGG	-	chr4_4:15317667-15317686	None:intergenic	30.0%
GTTGAACTAGCGTATAAATA+AGG	-	chr4_4:15318028-15318047	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	15316985	15322424	15316985	ID=Msa0671600;Name=Msa0671600
chr4_4	mRNA	15316985	15322424	15316985	ID=Msa0671600-mRNA-1;Parent=Msa0671600;Name=Msa0671600-mRNA-1;_AED=0.02;_eAED=0.02;_QI=183\|1\|1\|1\|1\|1\|5\|390\|582
chr4_4	exon	15316985	15317200	15316985	ID=Msa0671600-mRNA-1:exon:4608;Parent=Msa0671600-mRNA-1
chr4_4	exon	15317310	15317427	15317310	ID=Msa0671600-mRNA-1:exon:4609;Parent=Msa0671600-mRNA-1
chr4_4	exon	15318336	15318553	15318336	ID=Msa0671600-mRNA-1:exon:4610;Parent=Msa0671600-mRNA-1
chr4_4	exon	15319565	15320124	15319565	ID=Msa0671600-mRNA-1:exon:4611;Parent=Msa0671600-mRNA-1
chr4_4	exon	15321215	15322424	15321215	ID=Msa0671600-mRNA-1:exon:4612;Parent=Msa0671600-mRNA-1
chr4_4	five_prime_UTR	15316985	15317167	15316985	ID=Msa0671600-mRNA-1:five_prime_utr;Parent=Msa0671600-mRNA-1
chr4_4	CDS	15317168	15317200	15317168	ID=Msa0671600-mRNA-1:cds;Parent=Msa0671600-mRNA-1
chr4_4	CDS	15317310	15317427	15317310	ID=Msa0671600-mRNA-1:cds;Parent=Msa0671600-mRNA-1
chr4_4	CDS	15318336	15318553	15318336	ID=Msa0671600-mRNA-1:cds;Parent=Msa0671600-mRNA-1
chr4_4	CDS	15319565	15320124	15319565	ID=Msa0671600-mRNA-1:cds;Parent=Msa0671600-mRNA-1
chr4_4	CDS	15321215	15322034	15321215	ID=Msa0671600-mRNA-1:cds;Parent=Msa0671600-mRNA-1
chr4_4	three_prime_UTR	15322035	15322424	15322035	ID=Msa0671600-mRNA-1:three_prime_utr;Parent=Msa0671600-mRNA-1

Gene Sequence

>Msa0671600

ATGGATGGAAACGAACAAAATTTAGCGTCACAGGTTGTTGAAGAAGAGGGGAGTATCAATTCCTGTACAAAAGATGGGTCAGTTGATTTTTATGGAAAACCAGCTTTGAAAAATAGTTCAGGTAGATGGAGAAGTGCCACATTGTTGTTAGTGAATCAAGGACTGGTTGCAGTGGCTTTCGCAGGAGTGGAGGCAAATTTGGTTATTTTCTGCAAATTAGTATTGAAACAAACTAATGTTGAGGCAGCAAACACTTTTAGCATATGGATGGGAACTACCTATTTCTTCTCTTTAATTGGAGCTTTTCTCAGTGACTCATATCTAGGAAGATACCTCACTTGCATTATATTCCAACTTGTGTTCATCATAGGGTTGATGGCGTTATCTTTGTCAACTCACTTCTTTTTACTCAAACCACATCGTTGTGAACAAATAGGAGAGTTATGTGAATCAGATACACAAAATCAGTTTCCACTTTTTTACCTATCAATATATCTAATAGCTCTAGGAAGTGGAGTTTCTGACCCTGCATTACCAACACTTGGTGCTGATCAATTTGATGAGGAAGAACCTAAAGAACAAAGATCCAAGGCCTCAATTTATGGCTACTTTTATGTGGCATTGAACTTGGGATCATTGGTTGCTGAGACTATATTGGCTTACATAGAGACTACAGGACATTGGGTGCTTGGATTCTGGATATGTACAAGTTGTGCAGCTGTTTCATTTCTTGTTTTGTTGAGTGGAACTCTTAGATACAGACACTATAAGACTTTTGGAAACCCTTTCTCTAAGTTTTCACAACTGATTGTACCCTTTTTGAAGAAAATGAAATTTCAAATACAATCAATTGGGGAAGATCTCTACCACGACGGTATTCAAGGGGATGATACTCGTGTTAGAAGAATACACCATGCAAATGGCCTCAGGTTTTTTGATAGAGCTGGTATTGTTTCTGATGAGGCAACTGAGATGTTACTAGGTAAAGGCCAAAAATCATACAAATGGAATTTTAACAGTCTAACACAAAGCGAAGCGGTGACATATATTTTGAGAGTGTTACCAATATGGTTTTGCACAATCTTCTCCTCTAGTGTTTTCATACAATTGCTTTCTCTATTTGTTGAGCAAGGTTCTACAATGGACAGAACATTTTTCAAGTTTCAGATCCCTCCTTCAAGCATGACAGCATTTGATATCATAAGCACATCAACATTTATCATATTACTCGACGTTCTTATTATCCCATTGTATATTAAAGTGATGAAAAGATCTCCAAAACTTCCTACCGAGCTACAAAGTATTTTCATCGGACTCAGCATTACAATCATAACATTGATTGTTGCTGGTTTTGTAGAGCAGAGAAGATTAAGTTTTGCCAGCAATGATGGTAAAGAGATGAGTTCTTTGAGTATTTTTTGGTTGATACCACAATATATGCTTTTAGGAATAGCAGAAGCTTTTGTGTATGTAGCACAGATGAACTTTTTCACGTCACAAACTCCAGATGGTTTGGAAAGCTTGGGAATGGGGTTGTCTATGTTTTCATCCGCACTTGGTTGCTATGTCGGTAACATTTTTCTGACTGTGGTAAATAAAATTACATCAAGTGGTCAAGGACAACATGGTTGGGTTTCACCTAATCTAAATGATGGTCATTTAGATAGGTTTTTCTTCTTGACAGCATTTCTAATTGCTATTGACTTGATTGTGTATATTGTATGTGCCAAAAGATACAAGGGCATATAA

Protein sequence

>Msa0671600

MDGNEQNLASQVVEEEGSINSCTKDGSVDFYGKPALKNSSGRWRSATLLLVNQGLVAVAFAGVEANLVIFCKLVLKQTNVEAANTFSIWMGTTYFFSLIGAFLSDSYLGRYLTCIIFQLVFIIGLMALSLSTHFFLLKPHRCEQIGELCESDTQNQFPLFYLSIYLIALGSGVSDPALPTLGADQFDEEEPKEQRSKASIYGYFYVALNLGSLVAETILAYIETTGHWVLGFWICTSCAAVSFLVLLSGTLRYRHYKTFGNPFSKFSQLIVPFLKKMKFQIQSIGEDLYHDGIQGDDTRVRRIHHANGLRFFDRAGIVSDEATEMLLGKGQKSYKWNFNSLTQSEAVTYILRVLPIWFCTIFSSSVFIQLLSLFVEQGSTMDRTFFKFQIPPSSMTAFDIISTSTFIILLDVLIIPLYIKVMKRSPKLPTELQSIFIGLSITIITLIVAGFVEQRRLSFASNDGKEMSSLSIFWLIPQYMLLGIAEAFVYVAQMNFFTSQTPDGLESLGMGLSMFSSALGCYVGNIFLTVVNKITSSGQGQHGWVSPNLNDGHLDRFFFLTAFLIAIDLIVYIVCAKRYKGI*