Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796160 | XP_024639507.1 | 94.589 | 462 | 12 | 1 | 1 | 462 | 1 | 449 | 0.0 | 902 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796160 | sp|F4JYJ3|SFH11_ARATH | 51.200 | 375 | 149 | 5 | 87 | 461 | 22 | 362 | 1.60e-134 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796160 | G7JW23 | 94.372 | 462 | 12 | 2 | 1 | 462 | 1 | 448 | 0.0 | 895 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009760 | Msa0796160 | 0.812777 | 3.574575e-51 | -8.615850e-47 |
| Msa0034270 | Msa0796160 | 0.802572 | 5.264234e-49 | -8.615850e-47 |
| Msa0081520 | Msa0796160 | 0.818258 | 2.153280e-52 | -8.615850e-47 |
| Msa0094850 | Msa0796160 | 0.829572 | 4.776600e-55 | -8.615850e-47 |
| Msa0102870 | Msa0796160 | 0.803228 | 3.853229e-49 | -8.615850e-47 |
| Msa0616510 | Msa0796160 | 0.806086 | 9.757331e-50 | -8.615850e-47 |
| Msa0628670 | Msa0796160 | 0.801491 | 8.780425e-49 | -8.615850e-47 |
| Msa0699840 | Msa0796160 | 0.824441 | 8.058508e-54 | -8.615850e-47 |
| Msa0742740 | Msa0796160 | 0.831387 | 1.718469e-55 | -8.615850e-47 |
| Msa0796160 | Msa0820390 | 0.814857 | 1.244597e-51 | -8.615850e-47 |
| Msa0796160 | Msa0823820 | 0.825905 | 3.633260e-54 | -8.615850e-47 |
| Msa0796160 | Msa0833760 | 0.942081 | 1.349169e-101 | -8.615850e-47 |
| Msa0796160 | Msa0863010 | 0.826201 | 3.090000e-54 | -8.615850e-47 |
| Msa0796160 | Msa0996680 | 0.832047 | 1.181220e-55 | -8.615850e-47 |
| Msa0796160 | Msa1020630 | 0.852234 | 5.277372e-61 | -8.615850e-47 |
| Msa0796160 | Msa1023290 | 0.820000 | 8.643698e-53 | -8.615850e-47 |
| Msa0796160 | Msa1031930 | 0.851485 | 8.605406e-61 | -8.615850e-47 |
| Msa0796160 | Msa1050910 | 0.814006 | 1.918714e-51 | -8.615850e-47 |
| Msa0796160 | Msa1063950 | 0.803903 | 2.792103e-49 | -8.615850e-47 |
| Msa0796160 | Msa1071770 | 0.836009 | 1.202710e-56 | -8.615850e-47 |
| Msa0796160 | Msa1108160 | 0.802816 | 4.687915e-49 | -8.615850e-47 |
| Msa0796160 | Msa1113800 | 0.842467 | 2.540000e-58 | -8.615850e-47 |
| Msa0796160 | Msa1118600 | 0.806996 | 6.269892e-50 | -8.615850e-47 |
| Msa0796160 | Msa1132700 | 0.939064 | 2.378045e-99 | -8.615850e-47 |
| Msa0796160 | Msa1150820 | 0.841453 | 4.708860e-58 | -8.615850e-47 |
| Msa0796160 | Msa1151910 | 0.811385 | 7.187769e-51 | -8.615850e-47 |
| Msa0796160 | Msa1158830 | 0.829901 | 3.971354e-55 | -8.615850e-47 |
| Msa0796160 | Msa1160500 | 0.849147 | 3.895887e-60 | -8.615850e-47 |
| Msa0796160 | Msa1181190 | 0.833900 | 4.087606e-56 | -8.615850e-47 |
| Msa0796160 | Msa1184330 | 0.871803 | 5.172857e-67 | -8.615850e-47 |
| Msa0796160 | Msa1208160 | 0.808926 | 2.435840e-50 | -8.615850e-47 |
| Msa0796160 | Msa1218600 | 0.800857 | 1.183519e-48 | -8.615850e-47 |
| Msa0796160 | Msa1227940 | 0.849646 | 2.828846e-60 | -8.615850e-47 |
| Msa0796160 | Msa1258340 | 0.804683 | 1.920311e-49 | -8.615850e-47 |
| Msa0796160 | Msa1271040 | 0.814366 | 1.598025e-51 | -8.615850e-47 |
| Msa0796160 | Msa1341890 | 0.808501 | 3.003095e-50 | -8.615850e-47 |
| Msa0796160 | Msa1356830 | 0.818782 | 1.638085e-52 | -8.615850e-47 |
| Msa0796160 | Msa1422580 | 0.812669 | 3.773432e-51 | -8.615850e-47 |
| Msa0796160 | Msa1439610 | 0.815326 | 9.791013e-52 | -8.615850e-47 |
| Msa0796160 | Msa1442820 | 0.808135 | 3.593235e-50 | -8.615850e-47 |
| Msa0796160 | Msa1445190 | 0.812396 | 4.330253e-51 | -8.615850e-47 |
| Msa0129940 | Msa0796160 | 0.809903 | 1.503179e-50 | -8.615850e-47 |
| Msa0164400 | Msa0796160 | 0.804831 | 1.788490e-49 | -8.615850e-47 |
| Msa0173660 | Msa0796160 | 0.800774 | 1.231005e-48 | -8.615850e-47 |
| Msa0173890 | Msa0796160 | 0.812629 | 3.850856e-51 | -8.615850e-47 |
| Msa0186920 | Msa0796160 | 0.805023 | 1.630741e-49 | -8.615850e-47 |
| Msa0190690 | Msa0796160 | 0.809521 | 1.816261e-50 | -8.615850e-47 |
| Msa0191020 | Msa0796160 | 0.813774 | 2.159006e-51 | -8.615850e-47 |
| Msa0194820 | Msa0796160 | 0.822042 | 2.927645e-53 | -8.615850e-47 |
| Msa0194840 | Msa0796160 | 0.827396 | 1.601111e-54 | -8.615850e-47 |
| Msa0195630 | Msa0796160 | 0.813756 | 2.178708e-51 | -8.615850e-47 |
| Msa0206840 | Msa0796160 | 0.838657 | 2.524249e-57 | -8.615850e-47 |
| Msa0233320 | Msa0796160 | 0.809665 | 1.691456e-50 | -8.615850e-47 |
| Msa0237410 | Msa0796160 | 0.807048 | 6.114020e-50 | -8.615850e-47 |
| Msa0388770 | Msa0796160 | 0.841126 | 5.738946e-58 | -8.615850e-47 |
| Msa0393150 | Msa0796160 | 0.806463 | 8.126184e-50 | -8.615850e-47 |
| Msa0393440 | Msa0796160 | 0.808238 | 3.417463e-50 | -8.615850e-47 |
| Msa0417880 | Msa0796160 | 0.815143 | 1.075282e-51 | -8.615850e-47 |
| Msa0432380 | Msa0796160 | 0.806342 | 8.618285e-50 | -8.615850e-47 |
| Msa0447370 | Msa0796160 | 0.800884 | 1.168900e-48 | -8.615850e-47 |
| Msa0452920 | Msa0796160 | 0.802126 | 6.502974e-49 | -8.615850e-47 |
| Msa0462070 | Msa0796160 | 0.825643 | 4.190435e-54 | -8.615850e-47 |
| Msa0475790 | Msa0796160 | 0.824839 | 6.493521e-54 | -8.615850e-47 |
| Msa0479170 | Msa0796160 | 0.805797 | 1.122517e-49 | -8.615850e-47 |
| Msa0267920 | Msa0796160 | 0.804732 | 1.875989e-49 | -8.615850e-47 |
| Msa0300270 | Msa0796160 | 0.822344 | 2.490785e-53 | -8.615850e-47 |
| Msa0311420 | Msa0796160 | 0.808110 | 3.637439e-50 | -8.615850e-47 |
| Msa0326590 | Msa0796160 | 0.829479 | 5.030590e-55 | -8.615850e-47 |
| Msa0358670 | Msa0796160 | 0.801249 | 9.845459e-49 | -8.615850e-47 |
| Msa0361080 | Msa0796160 | 0.866696 | 2.360029e-65 | -8.615850e-47 |
| Msa0488790 | Msa0796160 | 0.822081 | 2.867178e-53 | -8.615850e-47 |
| Msa0513160 | Msa0796160 | 0.813169 | 2.932620e-51 | -8.615850e-47 |
| Msa0531460 | Msa0796160 | 0.800225 | 1.592838e-48 | -8.615850e-47 |
| Msa0574390 | Msa0796160 | 0.806307 | 8.763848e-50 | -8.615850e-47 |
| Msa0580440 | Msa0796160 | 0.900513 | 6.793622e-78 | -8.615850e-47 |
| Msa0588390 | Msa0796160 | 0.809248 | 2.078426e-50 | -8.615850e-47 |
| Msa0589510 | Msa0796160 | 0.800689 | 1.281324e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796160 | MtrunA17_Chr5g0399151 | 94.372 | 462 | 12 | 2 | 1 | 462 | 1 | 448 | 0.0 | 895 |
| Msa0796160 | MtrunA17_Chr4g0035391 | 52.336 | 321 | 133 | 3 | 53 | 369 | 44 | 348 | 6.66e-112 | 343 |
| Msa0796160 | MtrunA17_Chr5g0404711 | 51.266 | 316 | 139 | 2 | 54 | 367 | 13 | 315 | 1.21e-111 | 337 |
| Msa0796160 | MtrunA17_Chr3g0144911 | 48.235 | 340 | 158 | 3 | 54 | 388 | 44 | 370 | 9.07e-110 | 331 |
| Msa0796160 | MtrunA17_Chr1g0155521 | 53.535 | 297 | 123 | 2 | 73 | 369 | 72 | 353 | 4.90e-107 | 330 |
| Msa0796160 | MtrunA17_Chr3g0141821 | 54.579 | 273 | 111 | 1 | 93 | 365 | 71 | 330 | 1.10e-106 | 328 |
| Msa0796160 | MtrunA17_Chr8g0372651 | 52.941 | 289 | 123 | 1 | 81 | 369 | 45 | 320 | 3.03e-105 | 323 |
| Msa0796160 | MtrunA17_Chr3g0144891 | 49.840 | 313 | 142 | 2 | 57 | 367 | 37 | 336 | 3.73e-100 | 311 |
| Msa0796160 | MtrunA17_Chr7g0236461 | 48.276 | 290 | 137 | 1 | 81 | 370 | 66 | 342 | 7.87e-95 | 298 |
| Msa0796160 | MtrunA17_Chr4g0035361 | 45.748 | 341 | 161 | 5 | 116 | 453 | 2 | 321 | 1.78e-91 | 285 |
| Msa0796160 | MtrunA17_Chr3g0080051 | 45.794 | 321 | 156 | 3 | 54 | 369 | 37 | 344 | 2.08e-89 | 284 |
| Msa0796160 | MtrunA17_Chr4g0035381 | 43.279 | 305 | 156 | 3 | 92 | 392 | 61 | 352 | 2.37e-83 | 262 |
| Msa0796160 | MtrunA17_Chr8g0369291 | 47.931 | 290 | 134 | 4 | 81 | 369 | 59 | 332 | 4.43e-83 | 267 |
| Msa0796160 | MtrunA17_Chr3g0102691 | 29.130 | 230 | 140 | 6 | 75 | 301 | 5 | 214 | 3.78e-17 | 82.8 |
| Msa0796160 | MtrunA17_Chr3g0131581 | 28.452 | 239 | 127 | 6 | 109 | 340 | 63 | 264 | 4.52e-16 | 78.2 |
| Msa0796160 | MtrunA17_Chr2g0290661 | 28.042 | 189 | 128 | 3 | 115 | 301 | 38 | 220 | 5.23e-16 | 79.0 |
| Msa0796160 | MtrunA17_Chr4g0076441 | 29.082 | 196 | 129 | 4 | 110 | 301 | 26 | 215 | 2.53e-15 | 77.0 |
| Msa0796160 | MtrunA17_Chr8g0385691 | 29.536 | 237 | 123 | 7 | 109 | 338 | 43 | 242 | 7.86e-14 | 71.2 |
| Msa0796160 | MtrunA17_Chr8g0385681 | 29.630 | 243 | 115 | 9 | 109 | 338 | 46 | 245 | 1.38e-13 | 70.5 |
| Msa0796160 | MtrunA17_Chr1g0155071 | 28.889 | 225 | 127 | 8 | 116 | 338 | 46 | 239 | 5.35e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796160 | AT5G47510.1 | 51.200 | 375 | 149 | 5 | 87 | 461 | 22 | 362 | 1.62e-135 | 395 |
| Msa0796160 | AT5G47510.4 | 51.200 | 375 | 149 | 5 | 87 | 461 | 23 | 363 | 1.75e-135 | 395 |
| Msa0796160 | AT5G47510.2 | 54.192 | 334 | 132 | 2 | 87 | 412 | 23 | 343 | 2.34e-133 | 389 |
| Msa0796160 | AT5G47510.3 | 50.588 | 340 | 134 | 5 | 122 | 461 | 1 | 306 | 6.46e-120 | 353 |
| Msa0796160 | AT2G21540.3 | 48.571 | 350 | 159 | 4 | 54 | 398 | 32 | 365 | 6.24e-111 | 338 |
| Msa0796160 | AT2G21540.5 | 48.571 | 350 | 159 | 4 | 54 | 398 | 32 | 365 | 6.24e-111 | 338 |
| Msa0796160 | AT4G36490.1 | 51.104 | 317 | 139 | 3 | 52 | 366 | 14 | 316 | 1.55e-110 | 337 |
| Msa0796160 | AT2G21540.6 | 50.309 | 324 | 143 | 3 | 54 | 375 | 32 | 339 | 6.90e-110 | 336 |
| Msa0796160 | AT2G21540.2 | 50.309 | 324 | 143 | 3 | 54 | 375 | 32 | 339 | 6.90e-110 | 336 |
| Msa0796160 | AT2G21540.1 | 50.309 | 324 | 143 | 3 | 54 | 375 | 32 | 339 | 6.90e-110 | 336 |
| Msa0796160 | AT2G21540.4 | 50.309 | 324 | 143 | 3 | 54 | 375 | 32 | 339 | 6.90e-110 | 336 |
| Msa0796160 | AT2G18180.2 | 48.348 | 333 | 148 | 4 | 62 | 385 | 26 | 343 | 2.89e-109 | 334 |
| Msa0796160 | AT2G18180.1 | 49.045 | 314 | 138 | 3 | 79 | 385 | 45 | 343 | 5.09e-109 | 334 |
| Msa0796160 | AT4G39180.1 | 49.074 | 324 | 147 | 3 | 54 | 375 | 33 | 340 | 8.21e-109 | 333 |
| Msa0796160 | AT4G39180.3 | 49.074 | 324 | 147 | 3 | 54 | 375 | 33 | 340 | 8.24e-109 | 333 |
| Msa0796160 | AT4G39180.2 | 49.074 | 324 | 147 | 3 | 54 | 375 | 33 | 340 | 8.24e-109 | 333 |
| Msa0796160 | AT1G75370.1 | 51.948 | 308 | 132 | 2 | 81 | 388 | 79 | 370 | 1.08e-106 | 329 |
| Msa0796160 | AT4G39170.1 | 50.000 | 316 | 140 | 3 | 54 | 365 | 44 | 345 | 2.27e-106 | 328 |
| Msa0796160 | AT1G19650.3 | 46.197 | 355 | 165 | 5 | 64 | 414 | 50 | 382 | 5.27e-106 | 322 |
| Msa0796160 | AT1G75370.2 | 51.948 | 308 | 132 | 2 | 81 | 388 | 79 | 370 | 1.22e-105 | 328 |
| Msa0796160 | AT4G39170.2 | 50.160 | 313 | 138 | 3 | 54 | 362 | 44 | 342 | 3.85e-105 | 325 |
| Msa0796160 | AT4G34580.2 | 49.682 | 314 | 142 | 2 | 54 | 364 | 24 | 324 | 8.26e-105 | 323 |
| Msa0796160 | AT4G34580.1 | 49.682 | 314 | 142 | 2 | 54 | 364 | 24 | 324 | 8.26e-105 | 323 |
| Msa0796160 | AT1G19650.1 | 46.197 | 355 | 165 | 5 | 64 | 414 | 50 | 382 | 2.19e-104 | 323 |
| Msa0796160 | AT2G21520.2 | 48.265 | 317 | 146 | 3 | 54 | 365 | 48 | 351 | 3.26e-104 | 324 |
| Msa0796160 | AT2G21520.3 | 48.265 | 317 | 146 | 3 | 54 | 365 | 48 | 351 | 3.26e-104 | 324 |
| Msa0796160 | AT2G21520.1 | 48.265 | 317 | 146 | 3 | 54 | 365 | 44 | 347 | 4.18e-104 | 323 |
| Msa0796160 | AT3G24840.1 | 44.693 | 358 | 177 | 3 | 48 | 397 | 33 | 377 | 4.75e-103 | 319 |
| Msa0796160 | AT3G24840.6 | 44.693 | 358 | 177 | 3 | 48 | 397 | 33 | 377 | 4.75e-103 | 319 |
| Msa0796160 | AT3G24840.4 | 44.693 | 358 | 177 | 3 | 48 | 397 | 33 | 377 | 4.75e-103 | 319 |
| Msa0796160 | AT3G24840.2 | 44.693 | 358 | 177 | 3 | 48 | 397 | 33 | 377 | 4.75e-103 | 319 |
| Msa0796160 | AT3G24840.7 | 46.789 | 327 | 158 | 2 | 48 | 371 | 33 | 346 | 9.09e-103 | 318 |
| Msa0796160 | AT3G24840.3 | 46.789 | 327 | 158 | 2 | 48 | 371 | 33 | 346 | 9.09e-103 | 318 |
| Msa0796160 | AT3G24840.5 | 46.789 | 327 | 158 | 2 | 48 | 371 | 33 | 346 | 9.09e-103 | 318 |
| Msa0796160 | AT2G16380.2 | 45.205 | 365 | 174 | 5 | 41 | 392 | 3 | 354 | 1.91e-102 | 317 |
| Msa0796160 | AT2G16380.1 | 45.205 | 365 | 174 | 5 | 41 | 392 | 3 | 354 | 1.91e-102 | 317 |
| Msa0796160 | AT2G18180.4 | 49.281 | 278 | 119 | 3 | 115 | 385 | 10 | 272 | 1.42e-95 | 296 |
| Msa0796160 | AT2G18180.3 | 49.281 | 278 | 119 | 3 | 115 | 385 | 10 | 272 | 2.23e-95 | 296 |
| Msa0796160 | AT1G19650.2 | 47.697 | 304 | 138 | 3 | 111 | 414 | 28 | 310 | 2.49e-94 | 295 |
| Msa0796160 | AT5G56160.2 | 46.250 | 320 | 155 | 4 | 54 | 369 | 30 | 336 | 4.97e-94 | 293 |
| Msa0796160 | AT5G56160.1 | 46.250 | 320 | 155 | 4 | 54 | 369 | 30 | 336 | 1.10e-93 | 295 |
| Msa0796160 | AT5G56160.3 | 46.250 | 320 | 155 | 4 | 54 | 369 | 30 | 336 | 1.10e-93 | 295 |
| Msa0796160 | AT2G18180.5 | 50.769 | 260 | 106 | 3 | 133 | 385 | 1 | 245 | 1.93e-91 | 285 |
| Msa0796160 | AT1G55690.3 | 46.541 | 318 | 151 | 5 | 54 | 365 | 36 | 340 | 2.02e-89 | 285 |
| Msa0796160 | AT1G55690.2 | 46.541 | 318 | 151 | 5 | 54 | 365 | 36 | 340 | 2.15e-89 | 285 |
| Msa0796160 | AT1G55690.4 | 46.541 | 318 | 151 | 5 | 54 | 365 | 36 | 340 | 2.15e-89 | 285 |
| Msa0796160 | AT1G55690.1 | 46.541 | 318 | 151 | 5 | 54 | 365 | 36 | 340 | 2.15e-89 | 285 |
| Msa0796160 | AT1G55690.5 | 46.541 | 318 | 151 | 5 | 54 | 365 | 36 | 340 | 2.15e-89 | 285 |
| Msa0796160 | AT2G16380.3 | 49.237 | 262 | 118 | 2 | 133 | 392 | 1 | 249 | 2.51e-85 | 269 |
| Msa0796160 | AT5G47730.4 | 28.054 | 221 | 144 | 6 | 90 | 301 | 6 | 220 | 2.86e-16 | 80.5 |
| Msa0796160 | AT5G47730.1 | 28.054 | 221 | 144 | 6 | 90 | 301 | 6 | 220 | 2.86e-16 | 80.5 |
| Msa0796160 | AT1G55840.1 | 28.111 | 217 | 136 | 5 | 89 | 301 | 20 | 220 | 8.59e-16 | 78.6 |
| Msa0796160 | AT1G55840.2 | 29.592 | 196 | 128 | 4 | 110 | 301 | 4 | 193 | 9.47e-16 | 78.2 |
| Msa0796160 | AT5G47730.2 | 29.825 | 171 | 112 | 4 | 133 | 301 | 1 | 165 | 2.85e-13 | 70.5 |
| Msa0796160 | AT5G47730.3 | 29.825 | 171 | 112 | 4 | 133 | 301 | 1 | 165 | 2.85e-13 | 70.5 |
| Msa0796160 | AT1G01630.1 | 28.333 | 240 | 122 | 9 | 109 | 338 | 46 | 245 | 9.58e-12 | 65.5 |
Find 96 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAACACTAATTATGTATT+TGG | 0.075644 | 5_3:+8212008 | None:intergenic |
| ATTAGTGTTGATAATAATTT+TGG | 0.089634 | 5_3:-8211997 | Msa0796160:three_prime_UTR |
| AACATTCCTGTTTCAGGTTT+TGG | 0.101416 | 5_3:-8213339 | Msa0796160:CDS |
| ATACAAATTTATTGAGTATT+TGG | 0.124347 | 5_3:+8215032 | None:intergenic |
| ATCTCCAACATTCCTGTTTC+AGG | 0.144392 | 5_3:-8213345 | Msa0796160:CDS |
| TGAATCATTTCTAACAATTC+TGG | 0.209519 | 5_3:+8213030 | None:intergenic |
| TCTTATCCGCTCATGAAATT+TGG | 0.248183 | 5_3:-8214815 | Msa0796160:CDS |
| ATTTGGAAGGAGTAAAAGTT+TGG | 0.279082 | 5_3:-8214798 | Msa0796160:CDS |
| TTTATTATTAATGCTGGTTC+TGG | 0.287893 | 5_3:-8213539 | Msa0796160:CDS |
| TCAACAATTTGTTCATCATT+TGG | 0.301735 | 5_3:+8214749 | None:intergenic |
| GATCTTCCTACTACACAAAA+AGG | 0.336401 | 5_3:-8214875 | Msa0796160:CDS |
| CCTGTGTATATTGAGAGAAT+TGG | 0.338897 | 5_3:-8214128 | Msa0796160:CDS |
| ATAATTGAGAAACATATCTT+TGG | 0.343213 | 5_3:+8214524 | None:intergenic |
| ATGATTATCATACTCTTCTA+AGG | 0.346356 | 5_3:-8214676 | Msa0796160:intron |
| TGCATCATCTTCTGGTGTTA+AGG | 0.348901 | 5_3:-8214942 | Msa0796160:CDS |
| CTGTCTTCGCCTTTCACCGT+TGG | 0.354870 | 5_3:+8214998 | None:intergenic |
| TCCATGAAGATGTACCTTGC+AGG | 0.355379 | 5_3:+8213829 | None:intergenic |
| TCAACACTAATTATGTATTT+GGG | 0.369346 | 5_3:+8212009 | None:intergenic |
| AGAAAAGATGCATCATCTTC+TGG | 0.370086 | 5_3:-8214950 | Msa0796160:CDS |
| AATAGGAGGATGAATTGATT+TGG | 0.371367 | 5_3:+8214910 | None:intergenic |
| TGTTTCTCAATTATCTGAAA+TGG | 0.373010 | 5_3:-8214515 | Msa0796160:CDS |
| GCATCATCTTCTGGTGTTAA+GGG | 0.378251 | 5_3:-8214941 | Msa0796160:CDS |
| ATTATGTTAGCTTTCTAGAA+TGG | 0.382824 | 5_3:+8211890 | None:intergenic |
| AGAATTGTTAGAAATGATTC+AGG | 0.387877 | 5_3:-8213028 | Msa0796160:intron |
| GTATGATAATCATTGTGTTT+AGG | 0.394177 | 5_3:+8214686 | None:intergenic |
| GCCTGCAAGGTACATCTTCA+TGG | 0.400385 | 5_3:-8213830 | Msa0796160:CDS |
| AAACTCTTTATTATTAATGC+TGG | 0.402252 | 5_3:-8213545 | Msa0796160:CDS |
| ATAATGATCTGTTACCGTTT+CGG | 0.410038 | 5_3:+8212640 | None:intergenic |
| AGCTTCCACCACAAGTATCT+TGG | 0.410693 | 5_3:-8213976 | Msa0796160:CDS |
| ATTTATTGAGTATTTGGATA+AGG | 0.414304 | 5_3:+8215038 | None:intergenic |
| ATAAGAAAACAATGACTTGA+TGG | 0.436946 | 5_3:+8214832 | None:intergenic |
| AAGGAGTAAAAGTTTGGAAA+AGG | 0.439103 | 5_3:-8214792 | Msa0796160:CDS |
| TCCTCCTATTGAAACGCATT+GGG | 0.444721 | 5_3:-8214897 | Msa0796160:CDS |
| AGATCCCAATGCGTTTCAAT+AGG | 0.448836 | 5_3:+8214893 | None:intergenic |
| TAGAACCCAAAACCTGAAAC+AGG | 0.449858 | 5_3:+8213333 | None:intergenic |
| AGTTTGGAAAAGGTTCTAGA+AGG | 0.449950 | 5_3:-8214782 | Msa0796160:CDS |
| AATTGCACATGTTCTGAGTA+TGG | 0.450333 | 5_3:-8213090 | Msa0796160:CDS |
| AGATGATCTAAGTATGTGTT+TGG | 0.450664 | 5_3:-8212540 | Msa0796160:CDS |
| CGCGAAATGCTTTCACGTGA+GGG | 0.453780 | 5_3:-8214719 | Msa0796160:CDS |
| TCGAGTCGACATGATTCATA+AGG | 0.459041 | 5_3:-8214481 | Msa0796160:intron |
| TTATGTTAGCTTTCTAGAAT+GGG | 0.460793 | 5_3:+8211891 | None:intergenic |
| GATTGGCTTGAAGCTAGTCT+TGG | 0.461154 | 5_3:-8212455 | Msa0796160:CDS |
| ATCCTCCTATTGAAACGCAT+TGG | 0.466005 | 5_3:-8214898 | Msa0796160:CDS |
| TGAAAATTATAAGTTACATA+TGG | 0.473694 | 5_3:+8211923 | None:intergenic |
| ATGTTATTATTCTATCATAG+TGG | 0.478240 | 5_3:-8212076 | Msa0796160:three_prime_UTR |
| CTTCTGGTGTTAAGGGATTG+AGG | 0.494321 | 5_3:-8214934 | Msa0796160:CDS |
| CTTGATAAGCCTTTCTTGTG+TGG | 0.496556 | 5_3:+8214073 | None:intergenic |
| CTGTGTATATTGAGAGAATT+GGG | 0.498675 | 5_3:-8214127 | Msa0796160:CDS |
| TGTCATTGAGCTCACCATCT+TGG | 0.505312 | 5_3:+8212296 | None:intergenic |
| ACAAGTATCTTGGATGTCAA+TGG | 0.505672 | 5_3:-8213966 | Msa0796160:CDS |
| AAGTATGTGTTTGGCACTTG+AGG | 0.508698 | 5_3:-8212531 | Msa0796160:CDS |
| TTGCTACTGTGCGTTCACTT+AGG | 0.508717 | 5_3:+8213483 | None:intergenic |
| GGCAAATAACCACACAAGAA+AGG | 0.513788 | 5_3:-8214082 | Msa0796160:CDS |
| TCGCGAAATGCTTTCACGTG+AGG | 0.516953 | 5_3:-8214720 | Msa0796160:CDS |
| GAGACAACAAGGGCTAGAAC+AGG | 0.521228 | 5_3:-8212509 | Msa0796160:CDS |
| CTAGAACAGGCTTGTCATGT+AGG | 0.524567 | 5_3:-8212496 | Msa0796160:CDS |
| CTCCTTCCAAATTTCATGAG+CGG | 0.525376 | 5_3:+8214809 | None:intergenic |
| GTTCTGGCTTTAAGATGTTG+TGG | 0.526574 | 5_3:-8213523 | Msa0796160:CDS |
| AAAACCTGAAACAGGAATGT+TGG | 0.535738 | 5_3:+8213341 | None:intergenic |
| TTAGCTGCTAATGAACATGC+AGG | 0.545388 | 5_3:+8214008 | None:intergenic |
| GGTTGCTTGATGAGTGATCA+AGG | 0.549060 | 5_3:-8213066 | Msa0796160:CDS |
| TACTATCCTCATGGATACCA+TGG | 0.558498 | 5_3:-8214170 | Msa0796160:CDS |
| ATGAGTACTCCAACGGTGAA+AGG | 0.563373 | 5_3:-8215007 | Msa0796160:CDS |
| TCCCAATGCGTTTCAATAGG+AGG | 0.565630 | 5_3:+8214896 | None:intergenic |
| CATGCAGACAACGGAAGAGA+TGG | 0.568473 | 5_3:-8212711 | Msa0796160:intron |
| CTTTGACGTCAAGGTTTCTG+CGG | 0.568605 | 5_3:-8214572 | Msa0796160:intron |
| TTACATATGGTATCATGTTG+TGG | 0.571513 | 5_3:+8211936 | None:intergenic |
| ATCCGCTCATGAAATTTGGA+AGG | 0.576650 | 5_3:-8214811 | Msa0796160:CDS |
| AAATGATGAACAAATTGTTG+AGG | 0.576847 | 5_3:-8214747 | Msa0796160:CDS |
| AGGATCATTGATGTCCGAAA+CGG | 0.582632 | 5_3:-8212654 | Msa0796160:intron |
| TGATAATCATTGTGTTTAGG+TGG | 0.583255 | 5_3:+8214689 | None:intergenic |
| CACAACAATGTGGTTTCAGA+AGG | 0.586412 | 5_3:-8212674 | Msa0796160:CDS |
| GATGTTGTGGAAAGCAGTGA+AGG | 0.591263 | 5_3:-8213510 | Msa0796160:CDS |
| AGAAAATCAACATTCGTTCG+TGG | 0.592508 | 5_3:-8211973 | Msa0796160:three_prime_UTR |
| CAATTATCTGAAATGGCGAA+AGG | 0.593477 | 5_3:-8214508 | Msa0796160:CDS |
| CTAATTTCTCAAAGCCTGCA+AGG | 0.598822 | 5_3:-8213843 | Msa0796160:CDS |
| TTACCTCAGTGTGTTGCTAG+AGG | 0.609354 | 5_3:-8213309 | Msa0796160:CDS |
| TGCCACATTTATCAACTCCA+TGG | 0.612313 | 5_3:+8214153 | None:intergenic |
| CCAATTCTCTCAATATACAC+AGG | 0.625976 | 5_3:+8214128 | None:intergenic |
| TGGCACTTGAGGAGACAACA+AGG | 0.626058 | 5_3:-8212520 | Msa0796160:CDS |
| TGCACTTCAAGACACCAAGA+TGG | 0.631706 | 5_3:-8212310 | Msa0796160:intron |
| TAGCTGCTAATGAACATGCA+GGG | 0.636345 | 5_3:+8214009 | None:intergenic |
| TGATGAGTGATCAAGGCCCA+TGG | 0.641896 | 5_3:-8213059 | Msa0796160:CDS |
| ATTGACATCCAAGATACTTG+TGG | 0.642379 | 5_3:+8213968 | None:intergenic |
| TGATAGATATTAACAAACTG+TGG | 0.642658 | 5_3:-8214103 | Msa0796160:CDS |
| TGATAGCAGTTATTATCCTG+AGG | 0.642954 | 5_3:-8213794 | Msa0796160:intron |
| CAGACAACGGAAGAGATGGA+TGG | 0.654863 | 5_3:-8212707 | Msa0796160:CDS |
| GACATCCAAGATACTTGTGG+TGG | 0.658366 | 5_3:+8213971 | None:intergenic |
| TGTATGAATGAGTACTCCAA+CGG | 0.663333 | 5_3:-8215014 | Msa0796160:exon |
| TACCATGGAGTTGATAAATG+TGG | 0.686716 | 5_3:-8214155 | Msa0796160:CDS |
| TGCTAGAGGATATTGATCCG+AGG | 0.699774 | 5_3:-8213295 | Msa0796160:intron |
| GGCACTTGAGGAGACAACAA+GGG | 0.705217 | 5_3:-8212519 | Msa0796160:CDS |
| TGCACATGTTCTGAGTATGG+AGG | 0.721718 | 5_3:-8213087 | Msa0796160:CDS |
| TCAACTCCATGGTATCCATG+AGG | 0.729821 | 5_3:+8214164 | None:intergenic |
| TATCCTCTAGCAACACACTG+AGG | 0.753762 | 5_3:+8213306 | None:intergenic |
| TGCGTGCGAACACAACAATG+TGG | 0.799380 | 5_3:-8212684 | Msa0796160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAGTTTTTAAAAAGTTA+TGG | + | chr5_3:8212634-8212653 | None:intergenic | 10.0% |
| !! | ATACAAATTTATTGAGTATT+TGG | + | chr5_3:8211965-8211984 | None:intergenic | 15.0% |
| !!! | ATATGAAATTTTTATTTGGT+TGG | - | chr5_3:8212578-8212597 | Msa0796160:intron | 15.0% |
| !!! | TAATCAATTAAATTTGTTCT+TGG | + | chr5_3:8214175-8214194 | None:intergenic | 15.0% |
| !!! | ATTAGTGTTGATAATAATTT+TGG | - | chr5_3:8214997-8215016 | Msa0796160:CDS | 15.0% |
| !!! | TTAGTGTTGATAATAATTTT+GGG | - | chr5_3:8214998-8215017 | Msa0796160:CDS | 15.0% |
| !! | TGAAAATTATAAGTTACATA+TGG | + | chr5_3:8215074-8215093 | None:intergenic | 15.0% |
| !! | ATTTATTGAGTATTTGGATA+AGG | + | chr5_3:8211959-8211978 | None:intergenic | 20.0% |
| !! | ATAATTGAGAAACATATCTT+TGG | + | chr5_3:8212473-8212492 | None:intergenic | 20.0% |
| !! | AACAAATTAAAACTCAACTA+TGG | + | chr5_3:8212735-8212754 | None:intergenic | 20.0% |
| !! | GTGTTTCATAATTTACTATA+TGG | - | chr5_3:8213075-8213094 | Msa0796160:CDS | 20.0% |
| !!! | AATTTTAATCGACTTCAATA+GGG | + | chr5_3:8213403-8213422 | None:intergenic | 20.0% |
| !! | AAACTCTTTATTATTAATGC+TGG | - | chr5_3:8213449-8213468 | Msa0796160:intron | 20.0% |
| !! | GTAACATATTCATCAAAAAA+AGG | + | chr5_3:8213786-8213805 | None:intergenic | 20.0% |
| !! | ATATGTTACTACTTACAATT+AGG | - | chr5_3:8213797-8213816 | Msa0796160:CDS | 20.0% |
| !! | AAATCTAAGAGTTTCATTAA+AGG | + | chr5_3:8213841-8213860 | None:intergenic | 20.0% |
| !! | TTGAATAACTCTAATTTATG+TGG | + | chr5_3:8214137-8214156 | None:intergenic | 20.0% |
| !! | TAGCATTACAAAAAATTGAT+TGG | - | chr5_3:8214522-8214541 | Msa0796160:CDS | 20.0% |
| !! | ATGTTATTATTCTATCATAG+TGG | - | chr5_3:8214918-8214937 | Msa0796160:CDS | 20.0% |
| !! | TCAACACTAATTATGTATTT+GGG | + | chr5_3:8214988-8215007 | None:intergenic | 20.0% |
| !! | ATCAACACTAATTATGTATT+TGG | + | chr5_3:8214989-8215008 | None:intergenic | 20.0% |
| !!! | TTTTCTGCTTATAGTTTTGA+AGG | - | chr5_3:8211929-8211948 | Msa0796160:three_prime_UTR | 25.0% |
| ! | ATAAGAAAACAATGACTTGA+TGG | + | chr5_3:8212165-8212184 | None:intergenic | 25.0% |
| !! | TCAACAATTTGTTCATCATT+TGG | + | chr5_3:8212248-8212267 | None:intergenic | 25.0% |
| ! | AAATGATGAACAAATTGTTG+AGG | - | chr5_3:8212247-8212266 | Msa0796160:intron | 25.0% |
| ! | GTATGATAATCATTGTGTTT+AGG | + | chr5_3:8212311-8212330 | None:intergenic | 25.0% |
| ! | ATGATTATCATACTCTTCTA+AGG | - | chr5_3:8212318-8212337 | Msa0796160:CDS | 25.0% |
| !! | TAAACATGATTTAGAACAGA+AGG | + | chr5_3:8212376-8212395 | None:intergenic | 25.0% |
| !! | TCTGTTCTAAATCATGTTTA+TGG | - | chr5_3:8212376-8212395 | Msa0796160:intron | 25.0% |
| ! | TGTTTCTCAATTATCTGAAA+TGG | - | chr5_3:8212479-8212498 | Msa0796160:CDS | 25.0% |
| !! | TTTTGATGTCATTCATTTTC+TGG | - | chr5_3:8212754-8212773 | Msa0796160:intron | 25.0% |
| ! | TGATAGATATTAACAAACTG+TGG | - | chr5_3:8212891-8212910 | Msa0796160:intron | 25.0% |
| !!! | GAATTTTAATCGACTTCAAT+AGG | + | chr5_3:8213404-8213423 | None:intergenic | 25.0% |
| !!! | TTTATTATTAATGCTGGTTC+TGG | - | chr5_3:8213455-8213474 | Msa0796160:intron | 25.0% |
| !!! | TATCAAAGATTTTTTCACCT+CGG | - | chr5_3:8213558-8213577 | Msa0796160:intron | 25.0% |
| !!! | ATACAAAAGTCATTTTACCT+CGG | + | chr5_3:8213719-8213738 | None:intergenic | 25.0% |
| ! | TGAATCATTTCTAACAATTC+TGG | + | chr5_3:8213967-8213986 | None:intergenic | 25.0% |
| ! | AGAATTGTTAGAAATGATTC+AGG | - | chr5_3:8213966-8213985 | Msa0796160:CDS | 25.0% |
| ! | TTTATTTGTCTTGTAGAAAC+AGG | - | chr5_3:8214047-8214066 | Msa0796160:CDS | 25.0% |
| ! | TATAGTTGTCACGAAAAAAT+GGG | - | chr5_3:8214077-8214096 | Msa0796160:CDS | 25.0% |
| ! | AAAATTATTCATGCAGACAA+CGG | - | chr5_3:8214274-8214293 | Msa0796160:intron | 25.0% |
| ! | CATTTAACTATGTTTAAGCA+AGG | + | chr5_3:8214414-8214433 | None:intergenic | 25.0% |
| ! | AATTTCTCTATGTTAAACCT+AGG | - | chr5_3:8214592-8214611 | Msa0796160:intron | 25.0% |
| ! | ATTTCTCTATGTTAAACCTA+GGG | - | chr5_3:8214593-8214612 | Msa0796160:intron | 25.0% |
| !!! | TGTTTCTTTTTTTCTCTTTC+AGG | - | chr5_3:8214760-8214779 | Msa0796160:CDS | 25.0% |
| !! | AAAAAAGAGTTGATTATGTC+AGG | - | chr5_3:8214962-8214981 | Msa0796160:CDS | 25.0% |
| AATAGGAGGATGAATTGATT+TGG | + | chr5_3:8212087-8212106 | None:intergenic | 30.0% | |
| ! | TTCTTTCCTTTTTGTGTAGT+AGG | + | chr5_3:8212128-8212147 | None:intergenic | 30.0% |
| ATTTGGAAGGAGTAAAAGTT+TGG | - | chr5_3:8212196-8212215 | Msa0796160:exon | 30.0% | |
| AAGGAGTAAAAGTTTGGAAA+AGG | - | chr5_3:8212202-8212221 | Msa0796160:CDS | 30.0% | |
| TGATAATCATTGTGTTTAGG+TGG | + | chr5_3:8212308-8212327 | None:intergenic | 30.0% | |
| CTAAATCATGTTTATGGACT+TGG | - | chr5_3:8212382-8212401 | Msa0796160:intron | 30.0% | |
| ! | ATAAGGTGAATTGACTCAAA+AGG | - | chr5_3:8212530-8212549 | Msa0796160:CDS | 30.0% |
| !! | TCATTTTCTGGTACATAATC+AGG | - | chr5_3:8212766-8212785 | Msa0796160:intron | 30.0% |
| GTGAAAAAATACTATCCTCA+TGG | - | chr5_3:8212815-8212834 | Msa0796160:intron | 30.0% | |
| CTGTGTATATTGAGAGAATT+GGG | - | chr5_3:8212867-8212886 | Msa0796160:intron | 30.0% | |
| CTTAACCAAATCAGCATTAT+TGG | + | chr5_3:8213102-8213121 | None:intergenic | 30.0% | |
| CAGTAGCAAAAATTCAAGTA+CGG | - | chr5_3:8213525-8213544 | Msa0796160:CDS | 30.0% | |
| GTTGCTACTGAAAAAAATCA+CGG | + | chr5_3:8213749-8213768 | None:intergenic | 30.0% | |
| AAAGGTAGAACATCACAAAA+AGG | + | chr5_3:8213823-8213842 | None:intergenic | 30.0% | |
| !! | AGTAACTTGCCAACATTTTT+GGG | - | chr5_3:8213877-8213896 | Msa0796160:intron | 30.0% |
| ! | ACAATTCTGGATTTTTCCAT+GGG | + | chr5_3:8213954-8213973 | None:intergenic | 30.0% |
| ! | AACAATTCTGGATTTTTCCA+TGG | + | chr5_3:8213955-8213974 | None:intergenic | 30.0% |
| CTATAGTTGTCACGAAAAAA+TGG | - | chr5_3:8214076-8214095 | Msa0796160:CDS | 30.0% | |
| TTATTCAACTACCATGCTTT+CGG | - | chr5_3:8214149-8214168 | Msa0796160:CDS | 30.0% | |
| ATAATGATCTGTTACCGTTT+CGG | + | chr5_3:8214357-8214376 | None:intergenic | 30.0% | |
| TACCTATGTCCTTATTATGT+AGG | - | chr5_3:8214385-8214404 | Msa0796160:intron | 30.0% | |
| ACCTATGTCCTTATTATGTA+GGG | - | chr5_3:8214386-8214405 | Msa0796160:intron | 30.0% | |
| GCTTAAACATAGTTAAATGC+AGG | - | chr5_3:8214415-8214434 | Msa0796160:intron | 30.0% | |
| AGATGATCTAAGTATGTGTT+TGG | - | chr5_3:8214454-8214473 | Msa0796160:intron | 30.0% | |
| TAGGGAATCCAATATGTTTA+GGG | - | chr5_3:8214611-8214630 | Msa0796160:intron | 30.0% | |
| GCAAATTACCCTAAACATAT+TGG | + | chr5_3:8214622-8214641 | None:intergenic | 30.0% | |
| TTACATATGGTATCATGTTG+TGG | + | chr5_3:8215061-8215080 | None:intergenic | 30.0% | |
| TGTATGAATGAGTACTCCAA+CGG | - | chr5_3:8211980-8211999 | Msa0796160:three_prime_UTR | 35.0% | |
| AGAAAAGATGCATCATCTTC+TGG | - | chr5_3:8212044-8212063 | Msa0796160:three_prime_UTR | 35.0% | |
| GATCTTCCTACTACACAAAA+AGG | - | chr5_3:8212119-8212138 | Msa0796160:three_prime_UTR | 35.0% | |
| TCTTATCCGCTCATGAAATT+TGG | - | chr5_3:8212179-8212198 | Msa0796160:three_prime_UTR | 35.0% | |
| !! | AGTTTGGAAAAGGTTCTAGA+AGG | - | chr5_3:8212212-8212231 | Msa0796160:CDS | 35.0% |
| ! | CAATTATCTGAAATGGCGAA+AGG | - | chr5_3:8212486-8212505 | Msa0796160:CDS | 35.0% |
| !! | TACCATGGAGTTGATAAATG+TGG | - | chr5_3:8212839-8212858 | Msa0796160:intron | 35.0% |
| CCAATTCTCTCAATATACAC+AGG | + | chr5_3:8212869-8212888 | None:intergenic | 35.0% | |
| CCTGTGTATATTGAGAGAAT+TGG | - | chr5_3:8212866-8212885 | Msa0796160:intron | 35.0% | |
| ATTGACATCCAAGATACTTG+TGG | + | chr5_3:8213029-8213048 | None:intergenic | 35.0% | |
| ACAAGTATCTTGGATGTCAA+TGG | - | chr5_3:8213028-8213047 | Msa0796160:intron | 35.0% | |
| ! | ATGGTCCAATAATGCTGATT+TGG | - | chr5_3:8213094-8213113 | Msa0796160:CDS | 35.0% |
| !! | AATGCTGATTTGGTTAAGTG+TGG | - | chr5_3:8213104-8213123 | Msa0796160:CDS | 35.0% |
| TGTGGTTGTATTATTCTTCC+AGG | - | chr5_3:8213122-8213141 | Msa0796160:intron | 35.0% | |
| GTGGTTGTATTATTCTTCCA+GGG | - | chr5_3:8213123-8213142 | Msa0796160:intron | 35.0% | |
| TTGAGAAATTAGACATTCCC+TGG | + | chr5_3:8213143-8213162 | None:intergenic | 35.0% | |
| TGATAGCAGTTATTATCCTG+AGG | - | chr5_3:8213200-8213219 | Msa0796160:intron | 35.0% | |
| !! | TGATCAACAAAAAGTACCTC+AGG | + | chr5_3:8213219-8213238 | None:intergenic | 35.0% |
| TTTGTTGATCATAGCTCATG+CGG | - | chr5_3:8213228-8213247 | Msa0796160:intron | 35.0% | |
| AAAACCTGAAACAGGAATGT+TGG | + | chr5_3:8213656-8213675 | None:intergenic | 35.0% | |
| !!! | AACATTCCTGTTTCAGGTTT+TGG | - | chr5_3:8213655-8213674 | Msa0796160:intron | 35.0% |
| !!! | ACATTCCTGTTTCAGGTTTT+GGG | - | chr5_3:8213656-8213675 | Msa0796160:intron | 35.0% |
| !! | CAGTAACTTGCCAACATTTT+TGG | - | chr5_3:8213876-8213895 | Msa0796160:intron | 35.0% |
| CAATTACCACCCAAAAATGT+TGG | + | chr5_3:8213889-8213908 | None:intergenic | 35.0% | |
| ! | AATTGCACATGTTCTGAGTA+TGG | - | chr5_3:8213904-8213923 | Msa0796160:intron | 35.0% |
| AGGTTTGTCAATATCAAGAG+CGG | - | chr5_3:8213986-8214005 | Msa0796160:CDS | 35.0% | |
| GAAAAGCTACTTATCGTGAA+AGG | + | chr5_3:8214229-8214248 | None:intergenic | 35.0% | |
| ! | TTCACGATAAGTAGCTTTTC+TGG | - | chr5_3:8214229-8214248 | Msa0796160:intron | 35.0% |
| TCTGGTAGAAATAACTGACA+AGG | - | chr5_3:8214247-8214266 | Msa0796160:intron | 35.0% | |
| TCCCTACATAATAAGGACAT+AGG | + | chr5_3:8214390-8214409 | None:intergenic | 35.0% | |
| CTAAACATATTGGATTCCCT+AGG | + | chr5_3:8214612-8214631 | None:intergenic | 35.0% | |
| CTAGGGAATCCAATATGTTT+AGG | - | chr5_3:8214610-8214629 | Msa0796160:intron | 35.0% | |
| AGAAAATCAACATTCGTTCG+TGG | - | chr5_3:8215021-8215040 | Msa0796160:exon | 35.0% | |
| ! | TGCATCATCTTCTGGTGTTA+AGG | - | chr5_3:8212052-8212071 | Msa0796160:three_prime_UTR | 40.0% |
| ! | GCATCATCTTCTGGTGTTAA+GGG | - | chr5_3:8212053-8212072 | Msa0796160:three_prime_UTR | 40.0% |
| ATCCTCCTATTGAAACGCAT+TGG | - | chr5_3:8212096-8212115 | Msa0796160:three_prime_UTR | 40.0% | |
| TCCTCCTATTGAAACGCATT+GGG | - | chr5_3:8212097-8212116 | Msa0796160:three_prime_UTR | 40.0% | |
| AGATCCCAATGCGTTTCAAT+AGG | + | chr5_3:8212104-8212123 | None:intergenic | 40.0% | |
| ATCCGCTCATGAAATTTGGA+AGG | - | chr5_3:8212183-8212202 | Msa0796160:exon | 40.0% | |
| CTCCTTCCAAATTTCATGAG+CGG | + | chr5_3:8212188-8212207 | None:intergenic | 40.0% | |
| TCGAGTCGACATGATTCATA+AGG | - | chr5_3:8212513-8212532 | Msa0796160:CDS | 40.0% | |
| TACTATCCTCATGGATACCA+TGG | - | chr5_3:8212824-8212843 | Msa0796160:intron | 40.0% | |
| TGCCACATTTATCAACTCCA+TGG | + | chr5_3:8212844-8212863 | None:intergenic | 40.0% | |
| GGCAAATAACCACACAAGAA+AGG | - | chr5_3:8212912-8212931 | Msa0796160:intron | 40.0% | |
| CTTGATAAGCCTTTCTTGTG+TGG | + | chr5_3:8212924-8212943 | None:intergenic | 40.0% | |
| TAGCTGCTAATGAACATGCA+GGG | + | chr5_3:8212988-8213007 | None:intergenic | 40.0% | |
| TTAGCTGCTAATGAACATGC+AGG | + | chr5_3:8212989-8213008 | None:intergenic | 40.0% | |
| CTAATTTCTCAAAGCCTGCA+AGG | - | chr5_3:8213151-8213170 | Msa0796160:intron | 40.0% | |
| !! | GTTCTGGCTTTAAGATGTTG+TGG | - | chr5_3:8213471-8213490 | Msa0796160:intron | 40.0% |
| TGTATCAACCTCTAACTGAC+AGG | - | chr5_3:8213610-8213629 | Msa0796160:intron | 40.0% | |
| AACACAAACCTGTCAGTTAG+AGG | + | chr5_3:8213621-8213640 | None:intergenic | 40.0% | |
| ATCTCCAACATTCCTGTTTC+AGG | - | chr5_3:8213649-8213668 | Msa0796160:intron | 40.0% | |
| TAGAACCCAAAACCTGAAAC+AGG | + | chr5_3:8213664-8213683 | None:intergenic | 40.0% | |
| !! | AACTTGCCAACATTTTTGGG+TGG | - | chr5_3:8213880-8213899 | Msa0796160:intron | 40.0% |
| CACAACAATGTGGTTTCAGA+AGG | - | chr5_3:8214320-8214339 | Msa0796160:intron | 40.0% | |
| AGGATCATTGATGTCCGAAA+CGG | - | chr5_3:8214340-8214359 | Msa0796160:intron | 40.0% | |
| GCAAGGATCCCTACATAATA+AGG | + | chr5_3:8214397-8214416 | None:intergenic | 40.0% | |
| AAGTATGTGTTTGGCACTTG+AGG | - | chr5_3:8214463-8214482 | Msa0796160:intron | 40.0% | |
| ATGAGTACTCCAACGGTGAA+AGG | - | chr5_3:8211987-8212006 | Msa0796160:three_prime_UTR | 45.0% | |
| ! | CTTCTGGTGTTAAGGGATTG+AGG | - | chr5_3:8212060-8212079 | Msa0796160:three_prime_UTR | 45.0% |
| TCCCAATGCGTTTCAATAGG+AGG | + | chr5_3:8212101-8212120 | None:intergenic | 45.0% | |
| CTGTATTGCCTTTGACGTCA+AGG | - | chr5_3:8212413-8212432 | Msa0796160:intron | 45.0% | |
| CTTTGACGTCAAGGTTTCTG+CGG | - | chr5_3:8212422-8212441 | Msa0796160:intron | 45.0% | |
| TCAACTCCATGGTATCCATG+AGG | + | chr5_3:8212833-8212852 | None:intergenic | 45.0% | |
| AGCTTCCACCACAAGTATCT+TGG | - | chr5_3:8213018-8213037 | Msa0796160:intron | 45.0% | |
| GACATCCAAGATACTTGTGG+TGG | + | chr5_3:8213026-8213045 | None:intergenic | 45.0% | |
| TCCATGAAGATGTACCTTGC+AGG | + | chr5_3:8213168-8213187 | None:intergenic | 45.0% | |
| TAGCTCATGCGGAGAAGATT+TGG | - | chr5_3:8213239-8213258 | Msa0796160:intron | 45.0% | |
| GATGTTGTGGAAAGCAGTGA+AGG | - | chr5_3:8213484-8213503 | Msa0796160:CDS | 45.0% | |
| TTGCTACTGTGCGTTCACTT+AGG | + | chr5_3:8213514-8213533 | None:intergenic | 45.0% | |
| TGTGCAAAACATTGCATCCG+AGG | + | chr5_3:8213578-8213597 | None:intergenic | 45.0% | |
| ! | TTACCTCAGTGTGTTGCTAG+AGG | - | chr5_3:8213685-8213704 | Msa0796160:intron | 45.0% |
| TATCCTCTAGCAACACACTG+AGG | + | chr5_3:8213691-8213710 | None:intergenic | 45.0% | |
| TGCTAGAGGATATTGATCCG+AGG | - | chr5_3:8213699-8213718 | Msa0796160:intron | 45.0% | |
| ! | TGCACATGTTCTGAGTATGG+AGG | - | chr5_3:8213907-8213926 | Msa0796160:intron | 45.0% |
| GGTTGCTTGATGAGTGATCA+AGG | - | chr5_3:8213928-8213947 | Msa0796160:intron | 45.0% | |
| TTTGTTCTTGGCCGAAAGCA+TGG | + | chr5_3:8214163-8214182 | None:intergenic | 45.0% | |
| CTAGAACAGGCTTGTCATGT+AGG | - | chr5_3:8214498-8214517 | Msa0796160:CDS | 45.0% | |
| !! | GATTGGCTTGAAGCTAGTCT+TGG | - | chr5_3:8214539-8214558 | Msa0796160:CDS | 45.0% |
| TGCACTTCAAGACACCAAGA+TGG | - | chr5_3:8214684-8214703 | Msa0796160:CDS | 45.0% | |
| TGTCATTGAGCTCACCATCT+TGG | + | chr5_3:8214701-8214720 | None:intergenic | 45.0% | |
| !!! | TTAAATATGAAATTTTTATT+TGG | - | chr5_3:8212574-8212593 | Msa0796160:intron | 5.0% |
| TCGCGAAATGCTTTCACGTG+AGG | - | chr5_3:8212274-8212293 | Msa0796160:intron | 50.0% | |
| CGCGAAATGCTTTCACGTGA+GGG | - | chr5_3:8212275-8212294 | Msa0796160:intron | 50.0% | |
| CGCAGAAACCTTGACGTCAA+AGG | + | chr5_3:8212424-8212443 | None:intergenic | 50.0% | |
| GCCTGCAAGGTACATCTTCA+TGG | - | chr5_3:8213164-8213183 | Msa0796160:intron | 50.0% | |
| TGATGAGTGATCAAGGCCCA+TGG | - | chr5_3:8213935-8213954 | Msa0796160:intron | 50.0% | |
| CATGCAGACAACGGAAGAGA+TGG | - | chr5_3:8214283-8214302 | Msa0796160:intron | 50.0% | |
| CAGACAACGGAAGAGATGGA+TGG | - | chr5_3:8214287-8214306 | Msa0796160:intron | 50.0% | |
| TGCGTGCGAACACAACAATG+TGG | - | chr5_3:8214310-8214329 | Msa0796160:intron | 50.0% | |
| TGGCACTTGAGGAGACAACA+AGG | - | chr5_3:8214474-8214493 | Msa0796160:intron | 50.0% | |
| GGCACTTGAGGAGACAACAA+GGG | - | chr5_3:8214475-8214494 | Msa0796160:intron | 50.0% | |
| GAGACAACAAGGGCTAGAAC+AGG | - | chr5_3:8214485-8214504 | Msa0796160:CDS | 50.0% | |
| CTGTCTTCGCCTTTCACCGT+TGG | + | chr5_3:8211999-8212018 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 8211899 | 8215117 | 8211899 | ID=Msa0796160;Name=Msa0796160 |
| chr5_3 | mRNA | 8211899 | 8215117 | 8211899 | ID=Msa0796160-mRNA-1;Parent=Msa0796160;Name=Msa0796160-mRNA-1;_AED=0.13;_eAED=0.13;_QI=88|0.8|0.90|1|1|1|11|300|462 |
| chr5_3 | exon | 8211899 | 8212234 | 8211899 | ID=Msa0796160-mRNA-1:exon:3392;Parent=Msa0796160-mRNA-1 |
| chr5_3 | exon | 8212311 | 8212355 | 8212311 | ID=Msa0796160-mRNA-1:exon:3391;Parent=Msa0796160-mRNA-1 |
| chr5_3 | exon | 8212442 | 8212579 | 8212442 | ID=Msa0796160-mRNA-1:exon:3390;Parent=Msa0796160-mRNA-1 |
| chr5_3 | exon | 8212655 | 8212726 | 8212655 | ID=Msa0796160-mRNA-1:exon:3389;Parent=Msa0796160-mRNA-1 |
| chr5_3 | exon | 8213029 | 8213137 | 8213029 | ID=Msa0796160-mRNA-1:exon:3388;Parent=Msa0796160-mRNA-1 |
| chr5_3 | exon | 8213296 | 8213384 | 8213296 | ID=Msa0796160-mRNA-1:exon:3387;Parent=Msa0796160-mRNA-1 |
| chr5_3 | exon | 8213475 | 8213576 | 8213475 | ID=Msa0796160-mRNA-1:exon:3386;Parent=Msa0796160-mRNA-1 |
| chr5_3 | exon | 8213795 | 8213872 | 8213795 | ID=Msa0796160-mRNA-1:exon:3385;Parent=Msa0796160-mRNA-1 |
| chr5_3 | exon | 8213962 | 8214228 | 8213962 | ID=Msa0796160-mRNA-1:exon:3384;Parent=Msa0796160-mRNA-1 |
| chr5_3 | exon | 8214482 | 8214581 | 8214482 | ID=Msa0796160-mRNA-1:exon:3383;Parent=Msa0796160-mRNA-1 |
| chr5_3 | exon | 8214677 | 8215117 | 8214677 | ID=Msa0796160-mRNA-1:exon:3382;Parent=Msa0796160-mRNA-1 |
| chr5_3 | five_prime_UTR | 8215030 | 8215117 | 8215030 | ID=Msa0796160-mRNA-1:five_prime_utr;Parent=Msa0796160-mRNA-1 |
| chr5_3 | CDS | 8214677 | 8215029 | 8214677 | ID=Msa0796160-mRNA-1:cds;Parent=Msa0796160-mRNA-1 |
| chr5_3 | CDS | 8214482 | 8214581 | 8214482 | ID=Msa0796160-mRNA-1:cds;Parent=Msa0796160-mRNA-1 |
| chr5_3 | CDS | 8213962 | 8214228 | 8213962 | ID=Msa0796160-mRNA-1:cds;Parent=Msa0796160-mRNA-1 |
| chr5_3 | CDS | 8213795 | 8213872 | 8213795 | ID=Msa0796160-mRNA-1:cds;Parent=Msa0796160-mRNA-1 |
| chr5_3 | CDS | 8213475 | 8213576 | 8213475 | ID=Msa0796160-mRNA-1:cds;Parent=Msa0796160-mRNA-1 |
| chr5_3 | CDS | 8213296 | 8213384 | 8213296 | ID=Msa0796160-mRNA-1:cds;Parent=Msa0796160-mRNA-1 |
| chr5_3 | CDS | 8213029 | 8213137 | 8213029 | ID=Msa0796160-mRNA-1:cds;Parent=Msa0796160-mRNA-1 |
| chr5_3 | CDS | 8212655 | 8212726 | 8212655 | ID=Msa0796160-mRNA-1:cds;Parent=Msa0796160-mRNA-1 |
| chr5_3 | CDS | 8212442 | 8212579 | 8212442 | ID=Msa0796160-mRNA-1:cds;Parent=Msa0796160-mRNA-1 |
| chr5_3 | CDS | 8212311 | 8212355 | 8212311 | ID=Msa0796160-mRNA-1:cds;Parent=Msa0796160-mRNA-1 |
| chr5_3 | CDS | 8212199 | 8212234 | 8212199 | ID=Msa0796160-mRNA-1:cds;Parent=Msa0796160-mRNA-1 |
| chr5_3 | three_prime_UTR | 8211899 | 8212198 | 8211899 | ID=Msa0796160-mRNA-1:three_prime_utr;Parent=Msa0796160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
