AlfalfaGEDB | Msa0592290

M. sativa cultivar zhongmu-4 / Msa0592290

KEGG: K08511|K08515
GO: GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0097708 GO:0098796
PFAM: PF00957.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0592290	XP_010241141.1	72.368	76	21	0	48	123	144	219	2.40e-31	120

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0592290	sp\|Q9MAS5\|VA726_ARATH	69.737	76	23	0	48	123	144	219	4.76e-25	97.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0317970	Msa0592290	0.802363	5.813281e-49	-8.615850e-47
Msa0432160	Msa0592290	0.810931	9.017002e-51	-8.615850e-47
Msa0476680	Msa0592290	0.814071	1.856341e-51	-8.615850e-47
Msa0521010	Msa0592290	0.816945	4.256770e-52	-8.615850e-47
Msa0592270	Msa0592290	0.808962	2.393214e-50	-8.615850e-47
Msa0592290	Msa1177560	0.802288	6.023006e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0592290	MtrunA17_Chr1g0169861	61.842	76	29	0	48	123	194	269	5.27e-29	105
Msa0592290	MtrunA17_Chr2g0296021	60.526	76	30	0	48	123	144	219	2.63e-28	102
Msa0592290	MtrunA17_Chr4g0010271	85.526	76	11	0	48	123	144	219	1.11e-27	101
Msa0592290	MtrunA17_Chr7g0237561	73.684	76	20	0	48	123	144	219	1.06e-21	85.9
Msa0592290	MtrunA17_Chr1g0210521	39.823	113	67	1	11	123	127	238	4.67e-20	82.0
Msa0592290	MtrunA17_Chr4g0043521	64.000	50	18	0	48	97	146	195	2.45e-16	71.6
Msa0592290	MtrunA17_Chr2g0291651	62.000	50	19	0	48	97	148	197	1.19e-15	70.1
Msa0592290	MtrunA17_Chr7g0237521	56.863	51	22	0	47	97	143	193	1.38e-14	67.0
Msa0592290	MtrunA17_Chr1g0169851	73.684	38	10	0	54	91	116	153	3.69e-13	62.0

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0592290	AT1G04760.2	69.737	76	23	48	123	144	219	4.84e-26	97.4
Msa0592290	AT1G04760.1	69.737	76	23	48	123	144	219	4.84e-26	97.4
Msa0592290	AT1G04750.2	76.316	76	18	48	123	66	141	2.50e-23	88.6
Msa0592290	AT1G04750.4	76.316	76	18	48	123	66	141	2.50e-23	88.6
Msa0592290	AT1G04750.3	76.316	76	18	48	123	66	141	2.50e-23	88.6
Msa0592290	AT1G04750.1	76.316	76	18	48	123	144	219	6.41e-23	89.4
Msa0592290	AT2G33120.3	73.684	76	20	48	123	62	137	2.44e-22	85.9
Msa0592290	AT2G33120.1	73.684	76	20	48	123	144	219	8.08e-22	86.7
Msa0592290	AT2G33120.2	73.684	76	20	48	123	152	227	9.42e-22	86.7
Msa0592290	AT2G32670.1	69.737	76	23	48	123	209	284	3.28e-21	86.3

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Find 32 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGTATTGTTTCATTTA+TGG	0.070672	4_2:-17598486	Msa0592290:three_prime_UTR
AACAATACAGTTTATAGAGT+AGG	0.609354	4_2:+17598496	None:intergenic
AACAGTAGAAAAGCAGCAGG+AGG	0.648994	4_2:-17601433	Msa0592290:intron
AACTGAGAACCTTCGCTCTC+AGG	0.417900	4_2:-17599473	Msa0592290:intron
ACCACATCTTTCTCTTCAAT+TGG	0.287559	4_2:+17598795	None:intergenic
AGACGTTGGATTTAATCCAA+CGG	0.662242	4_2:+17601476	None:intergenic
AGAGAAATGTCCATTGCCTT+TGG	0.362423	4_2:+17601533	None:intergenic
AGCATCTAACCTGAGAGCGA+AGG	0.629350	4_2:+17599464	None:intergenic
ATTATTCAGATAATAGAAAA+AGG	0.340727	4_2:-17601570	Msa0592290:CDS
ATTGTTCTTTCTGTGTGCCA+TGG	0.487473	4_2:-17598713	Msa0592290:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGACAAAAAGAGAGGAAAAA+GGG	+	chr4_2:17598504-17598523	None:intergenic	30.0%
TCACTAAAGTTGTCATGAAA+TGG	+	chr4_2:17598754-17598773	None:intergenic	30.0%
AAAAGAATGGAGAGAGAAAT+AGG	-	chr4_2:17598805-17598824	Msa0592290:CDS	30.0%
GTACAAAAGTTGTCACAAAA+TGG	-	chr4_2:17598872-17598891	Msa0592290:intron	30.0%
TAGTGTCTTTGAGTATATAC+AGG	-	chr4_2:17599541-17599560	Msa0592290:intron	30.0%
AAAGTAAGCAGCGTAAAAAT+AGG	-	chr4_2:17599568-17599587	Msa0592290:intron	30.0%
TAAGTGACCATTAAGTTTCA+AGG	+	chr4_2:17600000-17600019	None:intergenic	30.0%
AAAATCGCAAGCAAAATTGA+TGG	+	chr4_2:17600217-17600236	None:intergenic	30.0%
AAAATCGCAATCAAAATCGA+AGG	+	chr4_2:17600295-17600314	None:intergenic	30.0%
ATTGAAATAGGAGATGAGTA+TGG	-	chr4_2:17600619-17600638	Msa0592290:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	17598427	17601598	17598427	ID=Msa0592290;Name=Msa0592290
chr4_2	mRNA	17598427	17601598	17598427	ID=Msa0592290-mRNA-1;Parent=Msa0592290;Name=Msa0592290-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0\|0.5\|0.33\|0.66\|1\|1\|3\|273\|123
chr4_2	exon	17598427	17598843	17598427	ID=Msa0592290-mRNA-1:exon:5082;Parent=Msa0592290-mRNA-1
chr4_2	exon	17599474	17599536	17599474	ID=Msa0592290-mRNA-1:exon:5081;Parent=Msa0592290-mRNA-1
chr4_2	exon	17601434	17601598	17601434	ID=Msa0592290-mRNA-1:exon:5080;Parent=Msa0592290-mRNA-1
chr4_2	CDS	17601434	17601598	17601434	ID=Msa0592290-mRNA-1:cds;Parent=Msa0592290-mRNA-1
chr4_2	CDS	17599474	17599536	17599474	ID=Msa0592290-mRNA-1:cds;Parent=Msa0592290-mRNA-1
chr4_2	CDS	17598700	17598843	17598700	ID=Msa0592290-mRNA-1:cds;Parent=Msa0592290-mRNA-1
chr4_2	three_prime_UTR	17598427	17598699	17598427	ID=Msa0592290-mRNA-1:three_prime_utr;Parent=Msa0592290-mRNA-1

Gene Sequence	>Msa0592290 ATGGACATTATTCAGATAATAGAAAAAGGACGAGAAATTGTTCCCAAAGGCAATGGACATTTCTCTCTCCTTGTCCCTTTTTCCTCTCTTTTTGTCTCCACCGTTGGATTAAATCCAACGTCTCATAATTGCGAAGGAGAGATAACAGTAGAAAAGCAGCAGGAGGTTATTGACAGGAGAGAGAAGATTGAGGTTTTGGTGGATAAAACTGAGAACCTTCGCTCTCAGGCACAAGATTTCAGGCAGCAGGGAACCCAATTGAAGAGAAAGATGTGGTATCAAAACATGAAGAAAGAACTCATAGTTCTTGCTATCATAATTGCATTGATTCTCATTATTGTTCTTTCTGTGTGCCATGGCTTCAGTTGTTAA
Protein sequence	>Msa0592290 MDIIQIIEKGREIVPKGNGHFSLLVPFSSLFVSTVGLNPTSHNCEGEITVEKQQEVIDRREKIEVLVDKTENLRSQAQDFRQQGTQLKRKMWYQNMKKELIVLAIIIALILIIVLSVCHGFSC*