Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0592290 | XP_010241141.1 | 72.368 | 76 | 21 | 0 | 48 | 123 | 144 | 219 | 2.40e-31 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0592290 | sp|Q9MAS5|VA726_ARATH | 69.737 | 76 | 23 | 0 | 48 | 123 | 144 | 219 | 4.76e-25 | 97.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0432160 | Msa0592290 | 0.810931 | 9.017002e-51 | -8.615850e-47 |
| Msa0476680 | Msa0592290 | 0.814071 | 1.856341e-51 | -8.615850e-47 |
| Msa0317970 | Msa0592290 | 0.802363 | 5.813281e-49 | -8.615850e-47 |
| Msa0521010 | Msa0592290 | 0.816945 | 4.256770e-52 | -8.615850e-47 |
| Msa0592270 | Msa0592290 | 0.808962 | 2.393214e-50 | -8.615850e-47 |
| Msa0592290 | Msa1177560 | 0.802288 | 6.023006e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0592290 | MtrunA17_Chr1g0169861 | 61.842 | 76 | 29 | 0 | 48 | 123 | 194 | 269 | 5.27e-29 | 105 |
| Msa0592290 | MtrunA17_Chr2g0296021 | 60.526 | 76 | 30 | 0 | 48 | 123 | 144 | 219 | 2.63e-28 | 102 |
| Msa0592290 | MtrunA17_Chr4g0010271 | 85.526 | 76 | 11 | 0 | 48 | 123 | 144 | 219 | 1.11e-27 | 101 |
| Msa0592290 | MtrunA17_Chr7g0237561 | 73.684 | 76 | 20 | 0 | 48 | 123 | 144 | 219 | 1.06e-21 | 85.9 |
| Msa0592290 | MtrunA17_Chr1g0210521 | 39.823 | 113 | 67 | 1 | 11 | 123 | 127 | 238 | 4.67e-20 | 82.0 |
| Msa0592290 | MtrunA17_Chr4g0043521 | 64.000 | 50 | 18 | 0 | 48 | 97 | 146 | 195 | 2.45e-16 | 71.6 |
| Msa0592290 | MtrunA17_Chr2g0291651 | 62.000 | 50 | 19 | 0 | 48 | 97 | 148 | 197 | 1.19e-15 | 70.1 |
| Msa0592290 | MtrunA17_Chr7g0237521 | 56.863 | 51 | 22 | 0 | 47 | 97 | 143 | 193 | 1.38e-14 | 67.0 |
| Msa0592290 | MtrunA17_Chr1g0169851 | 73.684 | 38 | 10 | 0 | 54 | 91 | 116 | 153 | 3.69e-13 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0592290 | AT1G04760.2 | 69.737 | 76 | 23 | 0 | 48 | 123 | 144 | 219 | 4.84e-26 | 97.4 |
| Msa0592290 | AT1G04760.1 | 69.737 | 76 | 23 | 0 | 48 | 123 | 144 | 219 | 4.84e-26 | 97.4 |
| Msa0592290 | AT1G04750.2 | 76.316 | 76 | 18 | 0 | 48 | 123 | 66 | 141 | 2.50e-23 | 88.6 |
| Msa0592290 | AT1G04750.4 | 76.316 | 76 | 18 | 0 | 48 | 123 | 66 | 141 | 2.50e-23 | 88.6 |
| Msa0592290 | AT1G04750.3 | 76.316 | 76 | 18 | 0 | 48 | 123 | 66 | 141 | 2.50e-23 | 88.6 |
| Msa0592290 | AT1G04750.1 | 76.316 | 76 | 18 | 0 | 48 | 123 | 144 | 219 | 6.41e-23 | 89.4 |
| Msa0592290 | AT2G33120.3 | 73.684 | 76 | 20 | 0 | 48 | 123 | 62 | 137 | 2.44e-22 | 85.9 |
| Msa0592290 | AT2G33120.1 | 73.684 | 76 | 20 | 0 | 48 | 123 | 144 | 219 | 8.08e-22 | 86.7 |
| Msa0592290 | AT2G33120.2 | 73.684 | 76 | 20 | 0 | 48 | 123 | 152 | 227 | 9.42e-22 | 86.7 |
| Msa0592290 | AT2G32670.1 | 69.737 | 76 | 23 | 0 | 48 | 123 | 209 | 284 | 3.28e-21 | 86.3 |
| Msa0592290 | AT3G54300.3 | 48.684 | 76 | 39 | 0 | 48 | 123 | 163 | 238 | 3.32e-20 | 82.8 |
| Msa0592290 | AT3G54300.2 | 48.684 | 76 | 39 | 0 | 48 | 123 | 163 | 238 | 3.32e-20 | 82.8 |
| Msa0592290 | AT3G54300.1 | 48.684 | 76 | 39 | 0 | 48 | 123 | 163 | 238 | 3.32e-20 | 82.8 |
| Msa0592290 | AT5G11150.2 | 39.189 | 74 | 43 | 2 | 48 | 120 | 141 | 213 | 1.48e-12 | 62.0 |
| Msa0592290 | AT5G11150.1 | 39.474 | 76 | 44 | 2 | 48 | 122 | 141 | 215 | 1.77e-12 | 62.0 |
| Msa0592290 | AT5G22360.1 | 33.333 | 75 | 50 | 0 | 48 | 122 | 141 | 215 | 1.41e-11 | 59.3 |
Find 32 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTGTATTGTTTCATTTA+TGG | 0.070672 | 4_2:-17598486 | Msa0592290:three_prime_UTR |
| GAGAGAGAAGATTGAGGTTT+TGG | 0.203408 | 4_2:-17599503 | Msa0592290:CDS |
| ACCACATCTTTCTCTTCAAT+TGG | 0.287559 | 4_2:+17598795 | None:intergenic |
| GTTATGATGGGAAGTGAATA+AGG | 0.327133 | 4_2:-17598556 | Msa0592290:three_prime_UTR |
| CTAGAATTGTCACTACATAT+TGG | 0.335829 | 4_2:-17598661 | Msa0592290:three_prime_UTR |
| ATTATTCAGATAATAGAAAA+AGG | 0.340727 | 4_2:-17601570 | Msa0592290:CDS |
| ATTTGCAGGCACAAGATTTC+AGG | 0.345983 | 4_2:-17598829 | Msa0592290:intron |
| AGAGAAATGTCCATTGCCTT+TGG | 0.362423 | 4_2:+17601533 | None:intergenic |
| GAGAAATGTCCATTGCCTTT+GGG | 0.394286 | 4_2:+17601534 | None:intergenic |
| AACTGAGAACCTTCGCTCTC+AGG | 0.417900 | 4_2:-17599473 | Msa0592290:intron |
| CCACATCTTTCTCTTCAATT+GGG | 0.430467 | 4_2:+17598796 | None:intergenic |
| GGCACAAGATTTCAGGCAGC+AGG | 0.435566 | 4_2:-17598822 | Msa0592290:CDS |
| TTTGTTTATTAGTCATTCAA+TGG | 0.442860 | 4_2:-17598594 | Msa0592290:three_prime_UTR |
| TGACAGGAGAGAGAAGATTG+AGG | 0.476532 | 4_2:-17599509 | Msa0592290:CDS |
| GTTATTTGCAGGTTATTGAC+AGG | 0.481355 | 4_2:-17599525 | Msa0592290:intron |
| ATTGTTCTTTCTGTGTGCCA+TGG | 0.487473 | 4_2:-17598713 | Msa0592290:CDS |
| GATAACAGTAGAAAAGCAGC+AGG | 0.562281 | 4_2:-17601436 | Msa0592290:CDS |
| GAAATTGTTCCCAAAGGCAA+TGG | 0.565684 | 4_2:-17601543 | Msa0592290:CDS |
| TAAGTTAACAACTGAAGCCA+TGG | 0.574043 | 4_2:+17598696 | None:intergenic |
| CCTTCGCAATTATGAGACGT+TGG | 0.578001 | 4_2:+17601462 | None:intergenic |
| GTAGAATTAATCGGCACTCA+AGG | 0.580925 | 4_2:-17598430 | Msa0592290:three_prime_UTR |
| GGAAGTGAATAAGGTGTGGT+AGG | 0.593405 | 4_2:-17598547 | Msa0592290:three_prime_UTR |
| AACAATACAGTTTATAGAGT+AGG | 0.609354 | 4_2:+17598496 | None:intergenic |
| CCAACGTCTCATAATTGCGA+AGG | 0.622841 | 4_2:-17601462 | Msa0592290:CDS |
| GCACAAGATTTCAGGCAGCA+GGG | 0.625497 | 4_2:-17598821 | Msa0592290:CDS |
| AGCATCTAACCTGAGAGCGA+AGG | 0.629350 | 4_2:+17599464 | None:intergenic |
| GGACGAGAAATTGTTCCCAA+AGG | 0.632624 | 4_2:-17601549 | Msa0592290:CDS |
| AACAGTAGAAAAGCAGCAGG+AGG | 0.648994 | 4_2:-17601433 | Msa0592290:intron |
| CCCAATTGAAGAGAAAGATG+TGG | 0.649710 | 4_2:-17598796 | Msa0592290:CDS |
| AGACGTTGGATTTAATCCAA+CGG | 0.662242 | 4_2:+17601476 | None:intergenic |
| CGTTGGATTTAATCCAACGG+TGG | 0.675511 | 4_2:+17601479 | None:intergenic |
| GATGGGAAGTGAATAAGGTG+TGG | 0.696993 | 4_2:-17598551 | Msa0592290:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATTGAAGAA+AGG | + | chr4_2:17599045-17599064 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTAAAAGAATAGT+AGG | + | chr4_2:17599171-17599190 | None:intergenic | 10.0% |
| !! | ATTAATCATTAATTAACAAA+TGG | + | chr4_2:17599370-17599389 | None:intergenic | 10.0% |
| !! | ATTATTCAGATAATAGAAAA+AGG | - | chr4_2:17598433-17598452 | Msa0592290:three_prime_UTR | 15.0% |
| !!! | TAAATACCATATAAAGTATT+TGG | + | chr4_2:17598676-17598695 | None:intergenic | 15.0% |
| !! | CAATTACAAATGTTTAAATT+TGG | - | chr4_2:17598951-17598970 | Msa0592290:intron | 15.0% |
| !!! | TTATCTAAGATAATGAAAAT+TGG | + | chr4_2:17599194-17599213 | None:intergenic | 15.0% |
| !!! | TTAGATAACTTGTAATTAAA+GGG | - | chr4_2:17599206-17599225 | Msa0592290:intron | 15.0% |
| !!! | TTGTTCTGAATTTTTTTTTT+GGG | + | chr4_2:17599246-17599265 | None:intergenic | 15.0% |
| !!! | TTTGTTCTGAATTTTTTTTT+TGG | + | chr4_2:17599247-17599266 | None:intergenic | 15.0% |
| !!! | TGAATTTTTTAAATGTTCTT+TGG | - | chr4_2:17599318-17599337 | Msa0592290:intron | 15.0% |
| !! | TGTATATCACTTAAAATAAA+AGG | + | chr4_2:17599644-17599663 | None:intergenic | 15.0% |
| !! | TTATTCATGTAAATTGAAAT+AGG | - | chr4_2:17600607-17600626 | Msa0592290:intron | 15.0% |
| !!! | TTTTATTTAACTGGAATTAT+TGG | + | chr4_2:17601005-17601024 | None:intergenic | 15.0% |
| !! | CATACAATATTCATAATTAA+TGG | + | chr4_2:17601114-17601133 | None:intergenic | 15.0% |
| !! | TTAATTATGAATATTGTATG+AGG | - | chr4_2:17601114-17601133 | Msa0592290:intron | 15.0% |
| !!! | AATTTTGTTGTAGAATTAAT+CGG | - | chr4_2:17601564-17601583 | Msa0592290:CDS | 15.0% |
| !! | TGAAATCCAAATACTTTATA+TGG | - | chr4_2:17598667-17598686 | Msa0592290:three_prime_UTR | 20.0% |
| !! | AATAAGAAAAGAGAAAAACA+AGG | + | chr4_2:17598780-17598799 | None:intergenic | 20.0% |
| !! | TTCTTATTGATCAAAAAGAA+TGG | - | chr4_2:17598792-17598811 | Msa0592290:CDS | 20.0% |
| !! | ATGTTTAAATTTGGATTCTT+AGG | - | chr4_2:17598960-17598979 | Msa0592290:intron | 20.0% |
| !!! | CTTAGATAACTTGTAATTAA+AGG | - | chr4_2:17599205-17599224 | Msa0592290:intron | 20.0% |
| !!! | AAATTTTTATGATTTGCACA+AGG | - | chr4_2:17599845-17599864 | Msa0592290:intron | 20.0% |
| !! | CAAAGAAATCATCAATTATA+TGG | + | chr4_2:17599924-17599943 | None:intergenic | 20.0% |
| !! | AATTGAGACAAAATACTTAA+AGG | + | chr4_2:17600064-17600083 | None:intergenic | 20.0% |
| !! | ATAAATTCCATAGTCATAAA+TGG | + | chr4_2:17600158-17600177 | None:intergenic | 20.0% |
| !!! | ATTTTTGTAGAATCGATATA+GGG | + | chr4_2:17600259-17600278 | None:intergenic | 20.0% |
| !!! | TATTTTTGTAGAATCGATAT+AGG | + | chr4_2:17600260-17600279 | None:intergenic | 20.0% |
| !! | GAATTTCATTTAATATCATG+TGG | - | chr4_2:17600434-17600453 | Msa0592290:intron | 20.0% |
| !!! | TATTATTATGTGTTATTTGC+AGG | - | chr4_2:17600467-17600486 | Msa0592290:intron | 20.0% |
| !! | ATTTACATGAATAAAACTGT+TGG | + | chr4_2:17600601-17600620 | None:intergenic | 20.0% |
| !!! | ATTCCAATGTTTTAAAGTTT+TGG | - | chr4_2:17600793-17600812 | Msa0592290:intron | 20.0% |
| !! | AAAATTAGATGTGAGAATTT+GGG | + | chr4_2:17600870-17600889 | None:intergenic | 20.0% |
| !!! | GTTTCAAGATTTTATTTAAC+TGG | + | chr4_2:17601014-17601033 | None:intergenic | 20.0% |
| !! | TTACCAGTTATTTATTATCT+AGG | - | chr4_2:17601057-17601076 | Msa0592290:intron | 20.0% |
| !! | TTTGTTTATTAGTCATTCAA+TGG | - | chr4_2:17601409-17601428 | Msa0592290:intron | 20.0% |
| !! | TCATGTATAAAAAGTTATGA+TGG | - | chr4_2:17601434-17601453 | Msa0592290:CDS | 20.0% |
| !! | CATGTATAAAAAGTTATGAT+GGG | - | chr4_2:17601435-17601454 | Msa0592290:CDS | 20.0% |
| !! | AAACTGTATTGTTTCATTTA+TGG | - | chr4_2:17601517-17601536 | Msa0592290:CDS | 20.0% |
| ! | ATATGGTATTTATACGACAT+CGG | - | chr4_2:17598684-17598703 | Msa0592290:exon | 25.0% |
| ! | TTAAATTTGGATTCTTAGGT+AGG | - | chr4_2:17598964-17598983 | Msa0592290:intron | 25.0% |
| ! | ATATATTGAAGAAAGGCAAA+AGG | + | chr4_2:17599038-17599057 | None:intergenic | 25.0% |
| !! | TAACTTATCTTAGTGTTTTG+GGG | + | chr4_2:17599138-17599157 | None:intergenic | 25.0% |
| !! | CTAACTTATCTTAGTGTTTT+GGG | + | chr4_2:17599139-17599158 | None:intergenic | 25.0% |
| !! | AAATTAGATTGAAGCTTTTG+TGG | + | chr4_2:17599480-17599499 | None:intergenic | 25.0% |
| !!! | TCAAAGACACTAACTTTTTT+TGG | + | chr4_2:17599533-17599552 | None:intergenic | 25.0% |
| ! | TGATATACAATAGTTGAATG+TGG | - | chr4_2:17599655-17599674 | Msa0592290:intron | 25.0% |
| ! | TATGACTACTAAAGAATATC+TGG | - | chr4_2:17600093-17600112 | Msa0592290:intron | 25.0% |
| ! | CTTTAAACCATTTATGACTA+TGG | - | chr4_2:17600148-17600167 | Msa0592290:intron | 25.0% |
| !! | AATGAAATTCTAGAGACAAT+TGG | + | chr4_2:17600424-17600443 | None:intergenic | 25.0% |
| ! | ATGCATATAATAGTTAGTTC+TGG | - | chr4_2:17600670-17600689 | Msa0592290:intron | 25.0% |
| !!! | CATCCAAAACTTTAAAACAT+TGG | + | chr4_2:17600799-17600818 | None:intergenic | 25.0% |
| !!! | CAATGTTTTAAAGTTTTGGA+TGG | - | chr4_2:17600797-17600816 | Msa0592290:intron | 25.0% |
| ! | GAAAATTAGATGTGAGAATT+TGG | + | chr4_2:17600871-17600890 | None:intergenic | 25.0% |
| ! | TTAACTGGAATTATTGGATT+TGG | + | chr4_2:17600999-17601018 | None:intergenic | 25.0% |
| ! | TAGCCTAGATAATAAATAAC+TGG | + | chr4_2:17601063-17601082 | None:intergenic | 25.0% |
| ! | TATTGGAATGTCAATTGAAA+TGG | - | chr4_2:17601146-17601165 | Msa0592290:intron | 25.0% |
| ! | AACAATACAGTTTATAGAGT+AGG | + | chr4_2:17601510-17601529 | None:intergenic | 25.0% |
| AGACAAAAAGAGAGGAAAAA+GGG | + | chr4_2:17598504-17598523 | None:intergenic | 30.0% | |
| TCACTAAAGTTGTCATGAAA+TGG | + | chr4_2:17598754-17598773 | None:intergenic | 30.0% | |
| AAAAGAATGGAGAGAGAAAT+AGG | - | chr4_2:17598805-17598824 | Msa0592290:CDS | 30.0% | |
| GTACAAAAGTTGTCACAAAA+TGG | - | chr4_2:17598872-17598891 | Msa0592290:intron | 30.0% | |
| ! | TAACTCGCTATCATTTGTTT+TGG | - | chr4_2:17599000-17599019 | Msa0592290:intron | 30.0% |
| !! | AACTTATCTTAGTGTTTTGG+GGG | + | chr4_2:17599137-17599156 | None:intergenic | 30.0% |
| ! | GCTAACTTATCTTAGTGTTT+TGG | + | chr4_2:17599140-17599159 | None:intergenic | 30.0% |
| TAGTGTCTTTGAGTATATAC+AGG | - | chr4_2:17599541-17599560 | Msa0592290:intron | 30.0% | |
| AAAGTAAGCAGCGTAAAAAT+AGG | - | chr4_2:17599568-17599587 | Msa0592290:intron | 30.0% | |
| ! | TTAGACTTTGTTTGAGAGTT+TGG | - | chr4_2:17599722-17599741 | Msa0592290:intron | 30.0% |
| ! | TCTTTTGCCTTGAAACTTAA+TGG | - | chr4_2:17599990-17600009 | Msa0592290:intron | 30.0% |
| TAAGTGACCATTAAGTTTCA+AGG | + | chr4_2:17600000-17600019 | None:intergenic | 30.0% | |
| AAAATCGCAAGCAAAATTGA+TGG | + | chr4_2:17600217-17600236 | None:intergenic | 30.0% | |
| AAAATCGCAATCAAAATCGA+AGG | + | chr4_2:17600295-17600314 | None:intergenic | 30.0% | |
| ! | CATGAATAAAACTGTTGGTT+TGG | + | chr4_2:17600596-17600615 | None:intergenic | 30.0% |
| ATTGAAATAGGAGATGAGTA+TGG | - | chr4_2:17600619-17600638 | Msa0592290:intron | 30.0% | |
| !!! | TAAAGTTTTGGATGGAGTTA+TGG | - | chr4_2:17600805-17600824 | Msa0592290:intron | 30.0% |
| ! | GTTATGGTGTCTAAATCTTT+TGG | - | chr4_2:17600821-17600840 | Msa0592290:intron | 30.0% |
| ! | AATTTTCTTGTTGATGCCTT+AGG | - | chr4_2:17600884-17600903 | Msa0592290:intron | 30.0% |
| ! | ATTTTCTTGTTGATGCCTTA+GGG | - | chr4_2:17600885-17600904 | Msa0592290:intron | 30.0% |
| GTATGAGGATTGTGAATTAT+TGG | - | chr4_2:17601129-17601148 | Msa0592290:intron | 30.0% | |
| TTGAAATGGTATTCATTTGC+AGG | - | chr4_2:17601160-17601179 | Msa0592290:intron | 30.0% | |
| CTAGAATTGTCACTACATAT+TGG | - | chr4_2:17601342-17601361 | Msa0592290:intron | 30.0% | |
| GAGACAAAAAGAGAGGAAAA+AGG | + | chr4_2:17598505-17598524 | None:intergenic | 35.0% | |
| AGACGTTGGATTTAATCCAA+CGG | + | chr4_2:17598530-17598549 | None:intergenic | 35.0% | |
| AAACAGCGTGTCTATCAATT+AGG | + | chr4_2:17598606-17598625 | None:intergenic | 35.0% | |
| !!! | ACACGCTGTTTTTGTAGAAT+TGG | - | chr4_2:17598615-17598634 | Msa0592290:three_prime_UTR | 35.0% |
| GTATTTGGATTTCACTGCTA+TGG | + | chr4_2:17598661-17598680 | None:intergenic | 35.0% | |
| AACAATACCACCGTAATAGT+CGG | - | chr4_2:17599268-17599287 | Msa0592290:intron | 35.0% | |
| ! | TTTTTACGCTGCTTACTTTG+TGG | + | chr4_2:17599567-17599586 | None:intergenic | 35.0% |
| ! | ACTTTGTTTGAGAGTTTGGA+GGG | - | chr4_2:17599726-17599745 | Msa0592290:intron | 35.0% |
| ! | TTTCTTTGTGATTTGCATCG+AGG | - | chr4_2:17599936-17599955 | Msa0592290:intron | 35.0% |
| AAGTATTTCGTCAGACATGT+AGG | - | chr4_2:17600033-17600052 | Msa0592290:intron | 35.0% | |
| CTAAAGAATATCTGGCATCT+AGG | - | chr4_2:17600101-17600120 | Msa0592290:intron | 35.0% | |
| ! | ATCTAGGCTTGAGTATTTTG+TGG | - | chr4_2:17600117-17600136 | Msa0592290:intron | 35.0% |
| !!! | GACAGTAGGTTTTGAAAATC+GGG | + | chr4_2:17600361-17600380 | None:intergenic | 35.0% |
| !!! | GGACAGTAGGTTTTGAAAAT+CGG | + | chr4_2:17600362-17600381 | None:intergenic | 35.0% |
| ! | GATTTTCAAAACCTACTGTC+CGG | - | chr4_2:17600361-17600380 | Msa0592290:intron | 35.0% |
| GTTATTTGCAGGTTATTGAC+AGG | - | chr4_2:17600478-17600497 | Msa0592290:intron | 35.0% | |
| TCTTGAAACTCTAGCACTAT+CGG | - | chr4_2:17601025-17601044 | Msa0592290:intron | 35.0% | |
| CCACATCTTTCTCTTCAATT+GGG | + | chr4_2:17601210-17601229 | None:intergenic | 35.0% | |
| ACCACATCTTTCTCTTCAAT+TGG | + | chr4_2:17601211-17601230 | None:intergenic | 35.0% | |
| TAAGTTAACAACTGAAGCCA+TGG | + | chr4_2:17601310-17601329 | None:intergenic | 35.0% | |
| ! | GTTATGATGGGAAGTGAATA+AGG | - | chr4_2:17601447-17601466 | Msa0592290:CDS | 35.0% |
| GAAATTGTTCCCAAAGGCAA+TGG | - | chr4_2:17598460-17598479 | Msa0592290:three_prime_UTR | 40.0% | |
| GAGAAATGTCCATTGCCTTT+GGG | + | chr4_2:17598472-17598491 | None:intergenic | 40.0% | |
| AGAGAAATGTCCATTGCCTT+TGG | + | chr4_2:17598473-17598492 | None:intergenic | 40.0% | |
| AAAGAGAGGAAAAAGGGACA+AGG | + | chr4_2:17598498-17598517 | None:intergenic | 40.0% | |
| GATAACAGTAGAAAAGCAGC+AGG | - | chr4_2:17598567-17598586 | Msa0592290:three_prime_UTR | 40.0% | |
| TGGTCAAAAAAGATGTCGTC+AGG | - | chr4_2:17598635-17598654 | Msa0592290:three_prime_UTR | 40.0% | |
| !!! | TTATCTTAGTGTTTTGGGGG+TGG | + | chr4_2:17599134-17599153 | None:intergenic | 40.0% |
| CGTAACAGATCCGACTATTA+CGG | + | chr4_2:17599281-17599300 | None:intergenic | 40.0% | |
| ! | GACTTTGTTTGAGAGTTTGG+AGG | - | chr4_2:17599725-17599744 | Msa0592290:intron | 40.0% |
| ! | CTTTGTTTGAGAGTTTGGAG+GGG | - | chr4_2:17599727-17599746 | Msa0592290:intron | 40.0% |
| AGGCGAACATGTTGATATGA+TGG | - | chr4_2:17599890-17599909 | Msa0592290:intron | 40.0% | |
| ! | GAAAATCGGGATTTAGCTTC+AGG | + | chr4_2:17600348-17600367 | None:intergenic | 40.0% |
| ! | GCAAAGCACCTAAACATACA+CGG | + | chr4_2:17600390-17600409 | None:intergenic | 40.0% |
| ! | GAGAGAGAAGATTGAGGTTT+TGG | - | chr4_2:17600500-17600519 | Msa0592290:intron | 40.0% |
| !! | AGAGAAGATTGAGGTTTTGG+TGG | - | chr4_2:17600503-17600522 | Msa0592290:intron | 40.0% |
| ACTCGAATGATGTCCTTGTT+TGG | - | chr4_2:17600699-17600718 | Msa0592290:intron | 40.0% | |
| ACTCACACTTGAACCAAACA+AGG | + | chr4_2:17600715-17600734 | None:intergenic | 40.0% | |
| ! | TTGTTTGGTTCAAGTGTGAG+TGG | - | chr4_2:17600714-17600733 | Msa0592290:intron | 40.0% |
| ! | TTTTGGTCGTCCTGAATCAT+CGG | - | chr4_2:17600838-17600857 | Msa0592290:intron | 40.0% |
| CTTGAAACTCTAGCACTATC+GGG | - | chr4_2:17601026-17601045 | Msa0592290:intron | 40.0% | |
| ATTTGCAGGCACAAGATTTC+AGG | - | chr4_2:17601174-17601193 | Msa0592290:intron | 40.0% | |
| CCCAATTGAAGAGAAAGATG+TGG | - | chr4_2:17601207-17601226 | Msa0592290:intron | 40.0% | |
| ATTGTTCTTTCTGTGTGCCA+TGG | - | chr4_2:17601290-17601309 | Msa0592290:intron | 40.0% | |
| GTAGAATTAATCGGCACTCA+AGG | - | chr4_2:17601573-17601592 | Msa0592290:CDS | 40.0% | |
| GGACGAGAAATTGTTCCCAA+AGG | - | chr4_2:17598454-17598473 | Msa0592290:three_prime_UTR | 45.0% | |
| AACGGTGGAGACAAAAAGAG+AGG | + | chr4_2:17598512-17598531 | None:intergenic | 45.0% | |
| ! | TCTCTTTTTGTCTCCACCGT+TGG | - | chr4_2:17598511-17598530 | Msa0592290:three_prime_UTR | 45.0% |
| CGTTGGATTTAATCCAACGG+TGG | + | chr4_2:17598527-17598546 | None:intergenic | 45.0% | |
| CCTTCGCAATTATGAGACGT+TGG | + | chr4_2:17598544-17598563 | None:intergenic | 45.0% | |
| CCAACGTCTCATAATTGCGA+AGG | - | chr4_2:17598541-17598560 | Msa0592290:three_prime_UTR | 45.0% | |
| AACAGTAGAAAAGCAGCAGG+AGG | - | chr4_2:17598570-17598589 | Msa0592290:three_prime_UTR | 45.0% | |
| TACGACATCGGTAGACGATA+TGG | - | chr4_2:17598696-17598715 | Msa0592290:exon | 45.0% | |
| AACAGATCCGACTATTACGG+TGG | + | chr4_2:17599278-17599297 | None:intergenic | 45.0% | |
| ! | CGGATCTGTTACGTGTTTTG+CGG | - | chr4_2:17599288-17599307 | Msa0592290:intron | 45.0% |
| TTTGGGGGGAGACGAATATA+GGG | - | chr4_2:17599765-17599784 | Msa0592290:intron | 45.0% | |
| TCTGCACAAGAGATTGACGA+AGG | - | chr4_2:17599870-17599889 | Msa0592290:intron | 45.0% | |
| ! | ATCGGGATTTAGCTTCAGGT+CGG | + | chr4_2:17600344-17600363 | None:intergenic | 45.0% |
| ACCTAAACATACACGGACAC+CGG | + | chr4_2:17600383-17600402 | None:intergenic | 45.0% | |
| TGACAGGAGAGAGAAGATTG+AGG | - | chr4_2:17600494-17600513 | Msa0592290:intron | 45.0% | |
| TTTGGTCGTCCTGAATCATC+GGG | - | chr4_2:17600839-17600858 | Msa0592290:intron | 45.0% | |
| GATGGGAAGTGAATAAGGTG+TGG | - | chr4_2:17601452-17601471 | Msa0592290:CDS | 45.0% | |
| GGAAGTGAATAAGGTGTGGT+AGG | - | chr4_2:17601456-17601475 | Msa0592290:CDS | 45.0% | |
| TGTTTGAGAGTTTGGAGGGG+AGG | - | chr4_2:17599730-17599749 | Msa0592290:intron | 50.0% | |
| GTTTGAGAGTTTGGAGGGGA+GGG | - | chr4_2:17599731-17599750 | Msa0592290:intron | 50.0% | |
| ! | CTTTGGGGGGAGACGAATAT+AGG | - | chr4_2:17599764-17599783 | Msa0592290:intron | 50.0% |
| TTGGGGGGAGACGAATATAG+GGG | - | chr4_2:17599766-17599785 | Msa0592290:intron | 50.0% | |
| ! | GGATTTAGCTTCAGGTCGGA+AGG | + | chr4_2:17600340-17600359 | None:intergenic | 50.0% |
| TCCGGTGTCCGTGTATGTTT+AGG | - | chr4_2:17600379-17600398 | Msa0592290:intron | 50.0% | |
| AACTGAGAACCTTCGCTCTC+AGG | - | chr4_2:17600530-17600549 | Msa0592290:intron | 50.0% | |
| AGCATCTAACCTGAGAGCGA+AGG | + | chr4_2:17600542-17600561 | None:intergenic | 50.0% | |
| TGGGACTAACCCGATGATTC+AGG | + | chr4_2:17600851-17600870 | None:intergenic | 50.0% | |
| GTTGATGCCTTAGGGTTCAC+TGG | - | chr4_2:17600893-17600912 | Msa0592290:intron | 50.0% | |
| GCTTGAACCAGTGAACCCTA+AGG | + | chr4_2:17600903-17600922 | None:intergenic | 50.0% | |
| GCACAAGATTTCAGGCAGCA+GGG | - | chr4_2:17601182-17601201 | Msa0592290:intron | 50.0% | |
| AGAGTTTGGAGGGGAGGGAA+GGG | - | chr4_2:17599736-17599755 | Msa0592290:intron | 55.0% | |
| GGAGGGAAGGGAAAGGCTTT+GGG | - | chr4_2:17599748-17599767 | Msa0592290:intron | 55.0% | |
| GAGGGAAGGGAAAGGCTTTG+GGG | - | chr4_2:17599749-17599768 | Msa0592290:intron | 55.0% | |
| ! | AGGGAAGGGAAAGGCTTTGG+GGG | - | chr4_2:17599750-17599769 | Msa0592290:intron | 55.0% |
| ATACACGGACACCGGACAGT+AGG | + | chr4_2:17600375-17600394 | None:intergenic | 55.0% | |
| GGCACAAGATTTCAGGCAGC+AGG | - | chr4_2:17601181-17601200 | Msa0592290:intron | 55.0% | |
| GAGAGTTTGGAGGGGAGGGA+AGG | - | chr4_2:17599735-17599754 | Msa0592290:intron | 60.0% | |
| TTGGAGGGGAGGGAAGGGAA+AGG | - | chr4_2:17599741-17599760 | Msa0592290:intron | 60.0% | |
| GGGAGGGAAGGGAAAGGCTT+TGG | - | chr4_2:17599747-17599766 | Msa0592290:intron | 60.0% | |
| !! | GGGAAGGGAAAGGCTTTGGG+GGG | - | chr4_2:17599751-17599770 | Msa0592290:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 17598427 | 17601598 | 17598427 | ID=Msa0592290;Name=Msa0592290 |
| chr4_2 | mRNA | 17598427 | 17601598 | 17598427 | ID=Msa0592290-mRNA-1;Parent=Msa0592290;Name=Msa0592290-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.5|0.33|0.66|1|1|3|273|123 |
| chr4_2 | exon | 17598427 | 17598843 | 17598427 | ID=Msa0592290-mRNA-1:exon:5082;Parent=Msa0592290-mRNA-1 |
| chr4_2 | exon | 17599474 | 17599536 | 17599474 | ID=Msa0592290-mRNA-1:exon:5081;Parent=Msa0592290-mRNA-1 |
| chr4_2 | exon | 17601434 | 17601598 | 17601434 | ID=Msa0592290-mRNA-1:exon:5080;Parent=Msa0592290-mRNA-1 |
| chr4_2 | CDS | 17601434 | 17601598 | 17601434 | ID=Msa0592290-mRNA-1:cds;Parent=Msa0592290-mRNA-1 |
| chr4_2 | CDS | 17599474 | 17599536 | 17599474 | ID=Msa0592290-mRNA-1:cds;Parent=Msa0592290-mRNA-1 |
| chr4_2 | CDS | 17598700 | 17598843 | 17598700 | ID=Msa0592290-mRNA-1:cds;Parent=Msa0592290-mRNA-1 |
| chr4_2 | three_prime_UTR | 17598427 | 17598699 | 17598427 | ID=Msa0592290-mRNA-1:three_prime_utr;Parent=Msa0592290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
