AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0432160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0432160 MtrunA17_Chr3g0137081 99.273 275 2 0 113 387 1 275 0.0 564
Msa0432160 MtrunA17_Chr4g0001271 81.887 265 47 1 121 384 7 271 4.14e-162 456
Msa0432160 MtrunA17_Chr7g0267081 54.851 268 112 5 125 384 22 288 8.60e-94 282
Msa0432160 MtrunA17_Chr8g0386691 50.752 266 127 4 122 383 5 270 6.48e-89 269
Msa0432160 MtrunA17_Chr8g0386681 50.746 268 124 5 122 383 5 270 8.82e-87 264
Msa0432160 MtrunA17_Chr1g0177961 46.497 314 111 5 125 381 15 328 5.50e-85 261
Msa0432160 MtrunA17_Chr5g0418281 49.281 278 131 6 116 385 7 282 1.95e-81 251
Msa0432160 MtrunA17_Chr5g0447661 48.276 261 131 4 126 383 13 272 3.03e-80 247
Msa0432160 MtrunA17_Chr2g0321651 47.703 283 132 8 113 383 1 279 5.56e-74 231
Msa0432160 MtrunA17_Chr3g0144801 42.491 273 122 6 116 384 6 247 1.76e-67 214
Msa0432160 MtrunA17_Chr7g0228321 76.786 56 13 0 236 291 10 65 8.79e-25 96.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0432160 AT2G32070.1 78.030 264 57 1 122 384 6 269 2.14e-153 434
Msa0432160 AT1G80780.1 77.567 263 59 0 122 384 6 268 2.79e-152 431
Msa0432160 AT1G80780.2 77.567 263 59 0 122 384 6 268 2.79e-152 431
Msa0432160 AT1G80780.3 77.567 263 59 0 122 384 6 268 3.44e-152 431
Msa0432160 AT5G10960.1 76.806 263 61 0 122 384 6 268 5.55e-152 430
Msa0432160 AT1G15920.2 62.547 267 94 1 121 381 9 275 3.46e-118 345
Msa0432160 AT1G15920.1 62.547 267 94 1 121 381 9 275 3.46e-118 345
Msa0432160 AT3G44260.1 53.846 273 118 7 118 383 8 279 5.96e-91 275
Msa0432160 AT5G22250.1 52.985 268 118 7 124 383 10 277 8.01e-88 267
Msa0432160 AT1G06450.1 36.680 259 146 7 129 382 10 255 1.13e-44 158
Msa0432160 AT1G61470.1 36.402 239 132 6 130 362 4 228 3.99e-36 133
Msa0432160 AT3G44240.1 37.719 228 128 6 142 366 3 219 7.94e-35 129
Msa0432160 AT1G27820.1 34.034 238 141 6 130 362 8 234 4.92e-30 117
Msa0432160 AT1G27890.1 34.454 238 140 6 130 362 3 229 2.15e-27 110

Find 78 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCACAGTGGTTATGATTT+TGG 0.162019 3_2:+84289193 Msa0432160:CDS
TCCTCGACGAAGATCGATTT+TGG 0.237909 3_2:-84288266 None:intergenic
AAGAAAGAACAAAGTATAAT+TGG 0.288547 3_2:+84289535 Msa0432160:three_prime_UTR
TACTCACAGCTTGTACATTT+AGG 0.316594 3_2:+84289422 Msa0432160:CDS
CACTTCTGCCAGAAAGAAAA+TGG 0.325996 3_2:+84289608 Msa0432160:three_prime_UTR
AAAATGACGTCGTTTACAAT+TGG 0.327114 3_2:-84288130 None:intergenic
GGAATCGACGTGAACAGATT+TGG 0.350401 3_2:+84289115 Msa0432160:CDS
GAGAGAGAAGAACGAAGGTT+GGG 0.357475 3_2:-84288209 None:intergenic
GAACAAGCTTGCGGAATTGC+TGG 0.383855 3_2:+84289354 Msa0432160:CDS
AGAGAGAGAAGAACGAAGGT+TGG 0.387895 3_2:-84288210 None:intergenic
AGAGGTATGGAACGATAATC+TGG 0.393193 3_2:+84288751 Msa0432160:CDS
TTTGACGTGCAGGGCTTTGC+CGG 0.395764 3_2:+84289231 Msa0432160:CDS
AGTTTCCTGGTGTTGTTCTT+CGG 0.398208 3_2:+84288837 Msa0432160:CDS
GGCGAAACAGAGAAATATTC+TGG 0.400040 3_2:+84289469 Msa0432160:CDS
CGTCGTTTACAATTGGGCCT+GGG 0.407925 3_2:-84288123 None:intergenic
TGGGGTGCGAGGGTTGAGTC+TGG 0.408850 3_2:-84288190 None:intergenic
TATACTTATCAACAATTTCA+CGG 0.412664 3_2:-84288793 None:intergenic
AACTATCCGATCCAGCTTGA+TGG 0.415822 3_2:-84289399 None:intergenic
TCTGGTGTGTTGTATGGATT+AGG 0.418411 3_2:+84289487 Msa0432160:CDS
AAGTTCTGTAACAGTCTTCA+TGG 0.419529 3_2:+84289325 Msa0432160:CDS
GGTGTTGTTCTTCGGCCTGT+TGG 0.419609 3_2:+84288845 Msa0432160:CDS
AAATGACGTCGTTTACAATT+GGG 0.420982 3_2:-84288129 None:intergenic
AAATATTCTGGTGTGTTGTA+TGG 0.424598 3_2:+84289481 Msa0432160:CDS
GGAGAACTTCTGATGTCATC+CGG 0.426593 3_2:+84289136 Msa0432160:CDS
GTGTTGTTCTTCGGCCTGTT+GGG 0.429390 3_2:+84288846 Msa0432160:CDS
ACGTCGTTTACAATTGGGCC+TGG 0.432005 3_2:-84288124 None:intergenic
CGGAATTGCTGGAAGTTGAG+AGG 0.432657 3_2:+84289365 Msa0432160:CDS
GTCAACGAAGCAAAGGGATT+GGG 0.433233 3_2:-84288242 None:intergenic
ATGTTGAAGCTGATTCAGTT+AGG 0.437086 3_2:+84288923 Msa0432160:CDS
TGTTGAATGATAATGTTCAT+TGG 0.444197 3_2:+84289164 Msa0432160:CDS
GAAGCAAAGGGATTGGGAAA+TGG 0.457781 3_2:-84288236 None:intergenic
ATATGCTTAAAATTCCCAAC+AGG 0.468744 3_2:-84288860 None:intergenic
TGTTTGATATCATACACAAT+CGG 0.482779 3_2:-84289295 None:intergenic
TTGTACATTTAGGAAGTTGA+GGG 0.486839 3_2:+84289432 Msa0432160:CDS
TTAACGAAGGATTTACAGAA+AGG 0.493060 3_2:+84288710 Msa0432160:CDS
GTTGAATGATAATGTTCATT+GGG 0.498652 3_2:+84289165 Msa0432160:CDS
GTTTGATATCATACACAATC+GGG 0.509746 3_2:-84289294 None:intergenic
GCACTGATAGTCCTTGCATC+TGG 0.511115 3_2:+84288987 Msa0432160:CDS
CGATTCAAATCAGAGAGGTA+TGG 0.516845 3_2:+84288738 Msa0432160:CDS
GTTGGTGTGTGCCATCAAGC+TGG 0.516903 3_2:+84289388 Msa0432160:CDS
TTTGGAGTCAACGAAGCAAA+GGG 0.519348 3_2:-84288248 None:intergenic
TCTTAAAATCAATTCCGCAT+TGG 0.519845 3_2:-84289078 None:intergenic
GCGATGGATACAGAGTTTCC+TGG 0.522554 3_2:+84288824 Msa0432160:CDS
AGAACGAAGGTTGGGGTGCG+AGG 0.534010 3_2:-84288201 None:intergenic
GTCGTTTACAATTGGGCCTG+GGG 0.534292 3_2:-84288122 None:intergenic
AGTCAACGAAGCAAAGGGAT+TGG 0.535953 3_2:-84288243 None:intergenic
AGAGAGAAGAACGAAGGTTG+GGG 0.537636 3_2:-84288208 None:intergenic
CAAGCTAACAAAACAAGCTA+AGG 0.539782 3_2:-84289686 None:intergenic
GAGAACTTCTGATGTCATCC+GGG 0.551352 3_2:+84289137 Msa0432160:CDS
TTTAAGAAGAACAGCGAGCA+AGG 0.554251 3_2:+84289094 Msa0432160:CDS
ATTTGTACTCGGTGAGAACG+TGG 0.555563 3_2:-84288167 None:intergenic
CTTGTACATTTAGGAAGTTG+AGG 0.555789 3_2:+84289431 Msa0432160:CDS
AATCGATCTTCGTCGAGGAT+CGG 0.557321 3_2:+84288270 Msa0432160:CDS
GCTTTGCCGGATACACAAGC+TGG 0.557400 3_2:+84289244 Msa0432160:CDS
ATGGAACGATAATCTGGAAG+AGG 0.557973 3_2:+84288757 Msa0432160:CDS
GCAAGGACTATCAGTGCCAC+AGG 0.564639 3_2:-84288981 None:intergenic
TGGTGGTTTGAACAAGCTTG+CGG 0.579595 3_2:+84289345 Msa0432160:CDS
TTTGTACTCGGTGAGAACGT+GGG 0.579728 3_2:-84288166 None:intergenic
GAAGAGAGAGAGAAGAACGA+AGG 0.584387 3_2:-84288214 None:intergenic
GAACGAAGGTTGGGGTGCGA+GGG 0.586799 3_2:-84288200 None:intergenic
GTTGAGTCTGGATTTGTACT+CGG 0.590132 3_2:-84288178 None:intergenic
AAATTGAATTGCCAGATGCA+AGG 0.592828 3_2:-84288998 None:intergenic
TAAGTATAACTATGTTGCGA+TGG 0.597473 3_2:+84288808 Msa0432160:CDS
TTGCTGGAAGTTGAGAGGGT+TGG 0.602040 3_2:+84289370 Msa0432160:CDS
ATTATCATTCAACACAATCC+CGG 0.602210 3_2:-84289155 None:intergenic
TTGAGGGAAACATTCTTCAA+CGG 0.604445 3_2:+84289448 Msa0432160:CDS
TTGTACTCGGTGAGAACGTG+GGG 0.612039 3_2:-84288165 None:intergenic
ACAGGCCGAAGAACAACACC+AGG 0.618032 3_2:-84288842 None:intergenic
GGAATTGCTGGAAGTTGAGA+GGG 0.625969 3_2:+84289366 Msa0432160:CDS
GGACTATCAGTGCCACAGGT+AGG 0.632411 3_2:-84288977 None:intergenic
TGAAATGACGGATTTAACGA+AGG 0.651784 3_2:+84288697 Msa0432160:CDS
TGTGTGCCATCAAGCTGGAT+CGG 0.653723 3_2:+84289393 Msa0432160:CDS
TTCTGTAACAGTCTTCATGG+TGG 0.661335 3_2:+84289328 Msa0432160:CDS
TCCAAAATCGATCTTCGTCG+AGG 0.661811 3_2:+84288265 Msa0432160:CDS
AATGGAAATTTACCTACCTG+TGG 0.695151 3_2:+84288965 Msa0432160:CDS
CCTTGTAGTGAAGAAAACGA+AGG 0.744080 3_2:-84288304 None:intergenic
AGATTCGATTCAAATCAGAG+AGG 0.775869 3_2:+84288733 Msa0432160:CDS
GATTTGATAACAGATCTGAG+TGG 0.798204 3_2:+84288638 Msa0432160:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCAATTTTTATTTTTTTGA+AGG + chr3_2:84288055-84288074 Msa0432160:CDS 10.0%
!!! ATCAATTTTTATTTTTTTGA+AGG + chr3_2:84288055-84288074 Msa0432160:CDS 10.0%
!! TATACTTATCAACAATTTCA+CGG - chr3_2:84288796-84288815 None:intergenic 20.0%
!! AAGAAAGAACAAAGTATAAT+TGG + chr3_2:84289535-84289554 Msa0432160:three_prime_UTR 20.0%
!! TATACTTATCAACAATTTCA+CGG - chr3_2:84288796-84288815 None:intergenic 20.0%
!! AAGAAAGAACAAAGTATAAT+TGG + chr3_2:84289535-84289554 Msa0432160:three_prime_UTR 20.0%
! AGTTAATAGAGTGAAGAAAA+CGG - chr3_2:84288340-84288359 None:intergenic 25.0%
!!! TTTTGATTTGGATTTGGATT+TGG + chr3_2:84288661-84288680 Msa0432160:CDS 25.0%
!!! TTTTAACTATCAGACTTTGA+AGG + chr3_2:84288889-84288908 Msa0432160:CDS 25.0%
!!! TTAACTTTTTCTGATGAGAA+TGG + chr3_2:84288947-84288966 Msa0432160:CDS 25.0%
!! TGTTGAATGATAATGTTCAT+TGG + chr3_2:84289164-84289183 Msa0432160:CDS 25.0%
!! GTTGAATGATAATGTTCATT+GGG + chr3_2:84289165-84289184 Msa0432160:CDS 25.0%
! TGTTTGATATCATACACAAT+CGG - chr3_2:84289298-84289317 None:intergenic 25.0%
! AGTTAATAGAGTGAAGAAAA+CGG - chr3_2:84288340-84288359 None:intergenic 25.0%
!!! TTTTGATTTGGATTTGGATT+TGG + chr3_2:84288661-84288680 Msa0432160:CDS 25.0%
!!! TTTTAACTATCAGACTTTGA+AGG + chr3_2:84288889-84288908 Msa0432160:CDS 25.0%
!!! TTAACTTTTTCTGATGAGAA+TGG + chr3_2:84288947-84288966 Msa0432160:CDS 25.0%
!! TGTTGAATGATAATGTTCAT+TGG + chr3_2:84289164-84289183 Msa0432160:CDS 25.0%
!! GTTGAATGATAATGTTCATT+GGG + chr3_2:84289165-84289184 Msa0432160:CDS 25.0%
! TGTTTGATATCATACACAAT+CGG - chr3_2:84289298-84289317 None:intergenic 25.0%
AAATGACGTCGTTTACAATT+GGG - chr3_2:84288132-84288151 None:intergenic 30.0%
AAAATGACGTCGTTTACAAT+TGG - chr3_2:84288133-84288152 None:intergenic 30.0%
AATCGAATTGAAGTGAACTA+GGG - chr3_2:84288403-84288422 None:intergenic 30.0%
AAATCGAATTGAAGTGAACT+AGG - chr3_2:84288404-84288423 None:intergenic 30.0%
! TTTGTTGCTGTAGATTTGTT+AGG + chr3_2:84288587-84288606 Msa0432160:intron 30.0%
TTAACGAAGGATTTACAGAA+AGG + chr3_2:84288710-84288729 Msa0432160:CDS 30.0%
TAAGTATAACTATGTTGCGA+TGG + chr3_2:84288808-84288827 Msa0432160:CDS 30.0%
ATATGCTTAAAATTCCCAAC+AGG - chr3_2:84288863-84288882 None:intergenic 30.0%
TCTTAAAATCAATTCCGCAT+TGG - chr3_2:84289081-84289100 None:intergenic 30.0%
ATTATCATTCAACACAATCC+CGG - chr3_2:84289158-84289177 None:intergenic 30.0%
! TTTCACAGTGGTTATGATTT+TGG + chr3_2:84289193-84289212 Msa0432160:CDS 30.0%
GTTTGATATCATACACAATC+GGG - chr3_2:84289297-84289316 None:intergenic 30.0%
TTGTACATTTAGGAAGTTGA+GGG + chr3_2:84289432-84289451 Msa0432160:CDS 30.0%
AAATATTCTGGTGTGTTGTA+TGG + chr3_2:84289481-84289500 Msa0432160:CDS 30.0%
! AACAACAACCATTTTCTTTC+TGG - chr3_2:84289619-84289638 None:intergenic 30.0%
AAATGACGTCGTTTACAATT+GGG - chr3_2:84288132-84288151 None:intergenic 30.0%
AAAATGACGTCGTTTACAAT+TGG - chr3_2:84288133-84288152 None:intergenic 30.0%
AATCGAATTGAAGTGAACTA+GGG - chr3_2:84288403-84288422 None:intergenic 30.0%
AAATCGAATTGAAGTGAACT+AGG - chr3_2:84288404-84288423 None:intergenic 30.0%
! TTTGTTGCTGTAGATTTGTT+AGG + chr3_2:84288587-84288606 Msa0432160:intron 30.0%
TTAACGAAGGATTTACAGAA+AGG + chr3_2:84288710-84288729 Msa0432160:CDS 30.0%
TAAGTATAACTATGTTGCGA+TGG + chr3_2:84288808-84288827 Msa0432160:CDS 30.0%
ATATGCTTAAAATTCCCAAC+AGG - chr3_2:84288863-84288882 None:intergenic 30.0%
TCTTAAAATCAATTCCGCAT+TGG - chr3_2:84289081-84289100 None:intergenic 30.0%
ATTATCATTCAACACAATCC+CGG - chr3_2:84289158-84289177 None:intergenic 30.0%
! TTTCACAGTGGTTATGATTT+TGG + chr3_2:84289193-84289212 Msa0432160:CDS 30.0%
GTTTGATATCATACACAATC+GGG - chr3_2:84289297-84289316 None:intergenic 30.0%
TTGTACATTTAGGAAGTTGA+GGG + chr3_2:84289432-84289451 Msa0432160:CDS 30.0%
AAATATTCTGGTGTGTTGTA+TGG + chr3_2:84289481-84289500 Msa0432160:CDS 30.0%
! AACAACAACCATTTTCTTTC+TGG - chr3_2:84289619-84289638 None:intergenic 30.0%
! TAACTACTACTTCGTTTTCC+AGG + chr3_2:84288355-84288374 Msa0432160:intron 35.0%
! AACTACTACTTCGTTTTCCA+GGG + chr3_2:84288356-84288375 Msa0432160:intron 35.0%
ACTGAATTTGAAGATTCTGC+AGG + chr3_2:84288527-84288546 Msa0432160:intron 35.0%
!!! GTTAGGTTTTGAGATCTGAA+TGG + chr3_2:84288604-84288623 Msa0432160:intron 35.0%
! GATTTGATAACAGATCTGAG+TGG + chr3_2:84288638-84288657 Msa0432160:intron 35.0%
!!! AGATCTGAGTGGTTTTGATT+TGG + chr3_2:84288649-84288668 Msa0432160:intron 35.0%
!!! GAGTGGTTTTGATTTGGATT+TGG + chr3_2:84288655-84288674 Msa0432160:CDS 35.0%
!! TTTTGCTGTGTGTGAAATGA+CGG + chr3_2:84288685-84288704 Msa0432160:CDS 35.0%
!! TGAAATGACGGATTTAACGA+AGG + chr3_2:84288697-84288716 Msa0432160:CDS 35.0%
AGATTCGATTCAAATCAGAG+AGG + chr3_2:84288733-84288752 Msa0432160:CDS 35.0%
! ATGTTGAAGCTGATTCAGTT+AGG + chr3_2:84288923-84288942 Msa0432160:CDS 35.0%
AATGGAAATTTACCTACCTG+TGG + chr3_2:84288965-84288984 Msa0432160:CDS 35.0%
AAATTGAATTGCCAGATGCA+AGG - chr3_2:84289001-84289020 None:intergenic 35.0%
AAAAATCCAGCTTGTGTATC+CGG - chr3_2:84289253-84289272 None:intergenic 35.0%
!! GCTGGATTTTTCGATTTGAT+CGG + chr3_2:84289262-84289281 Msa0432160:CDS 35.0%
!! CTGGATTTTTCGATTTGATC+GGG + chr3_2:84289263-84289282 Msa0432160:CDS 35.0%
AAGTTCTGTAACAGTCTTCA+TGG + chr3_2:84289325-84289344 Msa0432160:CDS 35.0%
TACTCACAGCTTGTACATTT+AGG + chr3_2:84289422-84289441 Msa0432160:CDS 35.0%
CTTGTACATTTAGGAAGTTG+AGG + chr3_2:84289431-84289450 Msa0432160:CDS 35.0%
TTGAGGGAAACATTCTTCAA+CGG + chr3_2:84289448-84289467 Msa0432160:CDS 35.0%
CAAGCTAACAAAACAAGCTA+AGG - chr3_2:84289689-84289708 None:intergenic 35.0%
! TAACTACTACTTCGTTTTCC+AGG + chr3_2:84288355-84288374 Msa0432160:intron 35.0%
! AACTACTACTTCGTTTTCCA+GGG + chr3_2:84288356-84288375 Msa0432160:intron 35.0%
ACTGAATTTGAAGATTCTGC+AGG + chr3_2:84288527-84288546 Msa0432160:intron 35.0%
!!! GTTAGGTTTTGAGATCTGAA+TGG + chr3_2:84288604-84288623 Msa0432160:intron 35.0%
! GATTTGATAACAGATCTGAG+TGG + chr3_2:84288638-84288657 Msa0432160:intron 35.0%
!!! AGATCTGAGTGGTTTTGATT+TGG + chr3_2:84288649-84288668 Msa0432160:intron 35.0%
!!! GAGTGGTTTTGATTTGGATT+TGG + chr3_2:84288655-84288674 Msa0432160:CDS 35.0%
!! TTTTGCTGTGTGTGAAATGA+CGG + chr3_2:84288685-84288704 Msa0432160:CDS 35.0%
!! TGAAATGACGGATTTAACGA+AGG + chr3_2:84288697-84288716 Msa0432160:CDS 35.0%
AGATTCGATTCAAATCAGAG+AGG + chr3_2:84288733-84288752 Msa0432160:CDS 35.0%
! ATGTTGAAGCTGATTCAGTT+AGG + chr3_2:84288923-84288942 Msa0432160:CDS 35.0%
AATGGAAATTTACCTACCTG+TGG + chr3_2:84288965-84288984 Msa0432160:CDS 35.0%
AAATTGAATTGCCAGATGCA+AGG - chr3_2:84289001-84289020 None:intergenic 35.0%
AAAAATCCAGCTTGTGTATC+CGG - chr3_2:84289253-84289272 None:intergenic 35.0%
!! GCTGGATTTTTCGATTTGAT+CGG + chr3_2:84289262-84289281 Msa0432160:CDS 35.0%
!! CTGGATTTTTCGATTTGATC+GGG + chr3_2:84289263-84289282 Msa0432160:CDS 35.0%
AAGTTCTGTAACAGTCTTCA+TGG + chr3_2:84289325-84289344 Msa0432160:CDS 35.0%
TACTCACAGCTTGTACATTT+AGG + chr3_2:84289422-84289441 Msa0432160:CDS 35.0%
CTTGTACATTTAGGAAGTTG+AGG + chr3_2:84289431-84289450 Msa0432160:CDS 35.0%
TTGAGGGAAACATTCTTCAA+CGG + chr3_2:84289448-84289467 Msa0432160:CDS 35.0%
CAAGCTAACAAAACAAGCTA+AGG - chr3_2:84289689-84289708 None:intergenic 35.0%
ACCAAAAATTATCACACCCC+AGG + chr3_2:84288106-84288125 Msa0432160:CDS 40.0%
GTTGAGTCTGGATTTGTACT+CGG - chr3_2:84288181-84288200 None:intergenic 40.0%
! TTTGGAGTCAACGAAGCAAA+GGG - chr3_2:84288251-84288270 None:intergenic 40.0%
!!! TTTTGGAGTCAACGAAGCAA+AGG - chr3_2:84288252-84288271 None:intergenic 40.0%
CCTTGTAGTGAAGAAAACGA+AGG - chr3_2:84288307-84288326 None:intergenic 40.0%
! CCTTCGTTTTCTTCACTACA+AGG + chr3_2:84288304-84288323 Msa0432160:CDS 40.0%
TTGAAGTGAACTAGGGTTTG+AGG - chr3_2:84288396-84288415 None:intergenic 40.0%
AGCTTCGAATCAAACGTATG+AGG - chr3_2:84288501-84288520 None:intergenic 40.0%
CGATTCAAATCAGAGAGGTA+TGG + chr3_2:84288738-84288757 Msa0432160:CDS 40.0%
! AGAGGTATGGAACGATAATC+TGG + chr3_2:84288751-84288770 Msa0432160:CDS 40.0%
ATGGAACGATAATCTGGAAG+AGG + chr3_2:84288757-84288776 Msa0432160:CDS 40.0%
!! AGTTTCCTGGTGTTGTTCTT+CGG + chr3_2:84288837-84288856 Msa0432160:CDS 40.0%
TTTAAGAAGAACAGCGAGCA+AGG + chr3_2:84289094-84289113 Msa0432160:CDS 40.0%
!!! CATTGGGTTACTTTTCACAG+TGG + chr3_2:84289181-84289200 Msa0432160:CDS 40.0%
!!! TTTTGAAGCTTTTGACGTGC+AGG + chr3_2:84289221-84289240 Msa0432160:CDS 40.0%
!! TTTGAAGCTTTTGACGTGCA+GGG + chr3_2:84289222-84289241 Msa0432160:CDS 40.0%
TTCTGTAACAGTCTTCATGG+TGG + chr3_2:84289328-84289347 Msa0432160:CDS 40.0%
GGCGAAACAGAGAAATATTC+TGG + chr3_2:84289469-84289488 Msa0432160:CDS 40.0%
TCTGGTGTGTTGTATGGATT+AGG + chr3_2:84289487-84289506 Msa0432160:CDS 40.0%
CACTTCTGCCAGAAAGAAAA+TGG + chr3_2:84289608-84289627 Msa0432160:three_prime_UTR 40.0%
ACCAAAAATTATCACACCCC+AGG + chr3_2:84288106-84288125 Msa0432160:CDS 40.0%
GTTGAGTCTGGATTTGTACT+CGG - chr3_2:84288181-84288200 None:intergenic 40.0%
! TTTGGAGTCAACGAAGCAAA+GGG - chr3_2:84288251-84288270 None:intergenic 40.0%
!!! TTTTGGAGTCAACGAAGCAA+AGG - chr3_2:84288252-84288271 None:intergenic 40.0%
CCTTGTAGTGAAGAAAACGA+AGG - chr3_2:84288307-84288326 None:intergenic 40.0%
! CCTTCGTTTTCTTCACTACA+AGG + chr3_2:84288304-84288323 Msa0432160:CDS 40.0%
TTGAAGTGAACTAGGGTTTG+AGG - chr3_2:84288396-84288415 None:intergenic 40.0%
AGCTTCGAATCAAACGTATG+AGG - chr3_2:84288501-84288520 None:intergenic 40.0%
CGATTCAAATCAGAGAGGTA+TGG + chr3_2:84288738-84288757 Msa0432160:CDS 40.0%
! AGAGGTATGGAACGATAATC+TGG + chr3_2:84288751-84288770 Msa0432160:CDS 40.0%
ATGGAACGATAATCTGGAAG+AGG + chr3_2:84288757-84288776 Msa0432160:CDS 40.0%
!! AGTTTCCTGGTGTTGTTCTT+CGG + chr3_2:84288837-84288856 Msa0432160:CDS 40.0%
TTTAAGAAGAACAGCGAGCA+AGG + chr3_2:84289094-84289113 Msa0432160:CDS 40.0%
!!! CATTGGGTTACTTTTCACAG+TGG + chr3_2:84289181-84289200 Msa0432160:CDS 40.0%
!!! TTTTGAAGCTTTTGACGTGC+AGG + chr3_2:84289221-84289240 Msa0432160:CDS 40.0%
!! TTTGAAGCTTTTGACGTGCA+GGG + chr3_2:84289222-84289241 Msa0432160:CDS 40.0%
TTCTGTAACAGTCTTCATGG+TGG + chr3_2:84289328-84289347 Msa0432160:CDS 40.0%
GGCGAAACAGAGAAATATTC+TGG + chr3_2:84289469-84289488 Msa0432160:CDS 40.0%
TCTGGTGTGTTGTATGGATT+AGG + chr3_2:84289487-84289506 Msa0432160:CDS 40.0%
CACTTCTGCCAGAAAGAAAA+TGG + chr3_2:84289608-84289627 Msa0432160:three_prime_UTR 40.0%
! GCCTGGGGTGTGATAATTTT+TGG - chr3_2:84288110-84288129 None:intergenic 45.0%
! TTTGTACTCGGTGAGAACGT+GGG - chr3_2:84288169-84288188 None:intergenic 45.0%
! ATTTGTACTCGGTGAGAACG+TGG - chr3_2:84288170-84288189 None:intergenic 45.0%
AGAGAGAAGAACGAAGGTTG+GGG - chr3_2:84288211-84288230 None:intergenic 45.0%
GAGAGAGAAGAACGAAGGTT+GGG - chr3_2:84288212-84288231 None:intergenic 45.0%
AGAGAGAGAAGAACGAAGGT+TGG - chr3_2:84288213-84288232 None:intergenic 45.0%
GAAGAGAGAGAGAAGAACGA+AGG - chr3_2:84288217-84288236 None:intergenic 45.0%
GAAGCAAAGGGATTGGGAAA+TGG - chr3_2:84288239-84288258 None:intergenic 45.0%
GTCAACGAAGCAAAGGGATT+GGG - chr3_2:84288245-84288264 None:intergenic 45.0%
AGTCAACGAAGCAAAGGGAT+TGG - chr3_2:84288246-84288265 None:intergenic 45.0%
TCCAAAATCGATCTTCGTCG+AGG + chr3_2:84288265-84288284 Msa0432160:CDS 45.0%
!! TCCTCGACGAAGATCGATTT+TGG - chr3_2:84288269-84288288 None:intergenic 45.0%
AATCGATCTTCGTCGAGGAT+CGG + chr3_2:84288270-84288289 Msa0432160:CDS 45.0%
! AGGTTTGAAGTGAGAAACCC+TGG - chr3_2:84288376-84288395 None:intergenic 45.0%
GGAATCGACGTGAACAGATT+TGG + chr3_2:84289115-84289134 Msa0432160:CDS 45.0%
GGAGAACTTCTGATGTCATC+CGG + chr3_2:84289136-84289155 Msa0432160:CDS 45.0%
GAGAACTTCTGATGTCATCC+GGG + chr3_2:84289137-84289156 Msa0432160:CDS 45.0%
TGGTGGTTTGAACAAGCTTG+CGG + chr3_2:84289345-84289364 Msa0432160:CDS 45.0%
GGAATTGCTGGAAGTTGAGA+GGG + chr3_2:84289366-84289385 Msa0432160:CDS 45.0%
AACTATCCGATCCAGCTTGA+TGG - chr3_2:84289402-84289421 None:intergenic 45.0%
! GCCTGGGGTGTGATAATTTT+TGG - chr3_2:84288110-84288129 None:intergenic 45.0%
! TTTGTACTCGGTGAGAACGT+GGG - chr3_2:84288169-84288188 None:intergenic 45.0%
! ATTTGTACTCGGTGAGAACG+TGG - chr3_2:84288170-84288189 None:intergenic 45.0%
AGAGAGAAGAACGAAGGTTG+GGG - chr3_2:84288211-84288230 None:intergenic 45.0%
GAGAGAGAAGAACGAAGGTT+GGG - chr3_2:84288212-84288231 None:intergenic 45.0%
AGAGAGAGAAGAACGAAGGT+TGG - chr3_2:84288213-84288232 None:intergenic 45.0%
GAAGAGAGAGAGAAGAACGA+AGG - chr3_2:84288217-84288236 None:intergenic 45.0%
GAAGCAAAGGGATTGGGAAA+TGG - chr3_2:84288239-84288258 None:intergenic 45.0%
GTCAACGAAGCAAAGGGATT+GGG - chr3_2:84288245-84288264 None:intergenic 45.0%
AGTCAACGAAGCAAAGGGAT+TGG - chr3_2:84288246-84288265 None:intergenic 45.0%
TCCAAAATCGATCTTCGTCG+AGG + chr3_2:84288265-84288284 Msa0432160:CDS 45.0%
!! TCCTCGACGAAGATCGATTT+TGG - chr3_2:84288269-84288288 None:intergenic 45.0%
AATCGATCTTCGTCGAGGAT+CGG + chr3_2:84288270-84288289 Msa0432160:CDS 45.0%
! AGGTTTGAAGTGAGAAACCC+TGG - chr3_2:84288376-84288395 None:intergenic 45.0%
GGAATCGACGTGAACAGATT+TGG + chr3_2:84289115-84289134 Msa0432160:CDS 45.0%
GGAGAACTTCTGATGTCATC+CGG + chr3_2:84289136-84289155 Msa0432160:CDS 45.0%
GAGAACTTCTGATGTCATCC+GGG + chr3_2:84289137-84289156 Msa0432160:CDS 45.0%
TGGTGGTTTGAACAAGCTTG+CGG + chr3_2:84289345-84289364 Msa0432160:CDS 45.0%
GGAATTGCTGGAAGTTGAGA+GGG + chr3_2:84289366-84289385 Msa0432160:CDS 45.0%
AACTATCCGATCCAGCTTGA+TGG - chr3_2:84289402-84289421 None:intergenic 45.0%
GTCGTTTACAATTGGGCCTG+GGG - chr3_2:84288125-84288144 None:intergenic 50.0%
CGTCGTTTACAATTGGGCCT+GGG - chr3_2:84288126-84288145 None:intergenic 50.0%
ACGTCGTTTACAATTGGGCC+TGG - chr3_2:84288127-84288146 None:intergenic 50.0%
! TTGTACTCGGTGAGAACGTG+GGG - chr3_2:84288168-84288187 None:intergenic 50.0%
GCGATGGATACAGAGTTTCC+TGG + chr3_2:84288824-84288843 Msa0432160:CDS 50.0%
! GTGTTGTTCTTCGGCCTGTT+GGG + chr3_2:84288846-84288865 Msa0432160:CDS 50.0%
! GCACTGATAGTCCTTGCATC+TGG + chr3_2:84288987-84289006 Msa0432160:CDS 50.0%
! ATCGAGCTTTTGCGCCAATG+CGG + chr3_2:84289064-84289083 Msa0432160:CDS 50.0%
GAACAAGCTTGCGGAATTGC+TGG + chr3_2:84289354-84289373 Msa0432160:CDS 50.0%
CGGAATTGCTGGAAGTTGAG+AGG + chr3_2:84289365-84289384 Msa0432160:CDS 50.0%
TTGCTGGAAGTTGAGAGGGT+TGG + chr3_2:84289370-84289389 Msa0432160:CDS 50.0%
TGTGTGCCATCAAGCTGGAT+CGG + chr3_2:84289393-84289412 Msa0432160:CDS 50.0%
GTCGTTTACAATTGGGCCTG+GGG - chr3_2:84288125-84288144 None:intergenic 50.0%
CGTCGTTTACAATTGGGCCT+GGG - chr3_2:84288126-84288145 None:intergenic 50.0%
ACGTCGTTTACAATTGGGCC+TGG - chr3_2:84288127-84288146 None:intergenic 50.0%
! TTGTACTCGGTGAGAACGTG+GGG - chr3_2:84288168-84288187 None:intergenic 50.0%
GCGATGGATACAGAGTTTCC+TGG + chr3_2:84288824-84288843 Msa0432160:CDS 50.0%
! GTGTTGTTCTTCGGCCTGTT+GGG + chr3_2:84288846-84288865 Msa0432160:CDS 50.0%
! GCACTGATAGTCCTTGCATC+TGG + chr3_2:84288987-84289006 Msa0432160:CDS 50.0%
! ATCGAGCTTTTGCGCCAATG+CGG + chr3_2:84289064-84289083 Msa0432160:CDS 50.0%
GAACAAGCTTGCGGAATTGC+TGG + chr3_2:84289354-84289373 Msa0432160:CDS 50.0%
CGGAATTGCTGGAAGTTGAG+AGG + chr3_2:84289365-84289384 Msa0432160:CDS 50.0%
TTGCTGGAAGTTGAGAGGGT+TGG + chr3_2:84289370-84289389 Msa0432160:CDS 50.0%
TGTGTGCCATCAAGCTGGAT+CGG + chr3_2:84289393-84289412 Msa0432160:CDS 50.0%
ACAGGCCGAAGAACAACACC+AGG - chr3_2:84288845-84288864 None:intergenic 55.0%
!! GGTGTTGTTCTTCGGCCTGT+TGG + chr3_2:84288845-84288864 Msa0432160:CDS 55.0%
GGACTATCAGTGCCACAGGT+AGG - chr3_2:84288980-84288999 None:intergenic 55.0%
GCAAGGACTATCAGTGCCAC+AGG - chr3_2:84288984-84289003 None:intergenic 55.0%
TTTGACGTGCAGGGCTTTGC+CGG + chr3_2:84289231-84289250 Msa0432160:CDS 55.0%
GCTTTGCCGGATACACAAGC+TGG + chr3_2:84289244-84289263 Msa0432160:CDS 55.0%
GTTGGTGTGTGCCATCAAGC+TGG + chr3_2:84289388-84289407 Msa0432160:CDS 55.0%
ACAGGCCGAAGAACAACACC+AGG - chr3_2:84288845-84288864 None:intergenic 55.0%
!! GGTGTTGTTCTTCGGCCTGT+TGG + chr3_2:84288845-84288864 Msa0432160:CDS 55.0%
GGACTATCAGTGCCACAGGT+AGG - chr3_2:84288980-84288999 None:intergenic 55.0%
GCAAGGACTATCAGTGCCAC+AGG - chr3_2:84288984-84289003 None:intergenic 55.0%
TTTGACGTGCAGGGCTTTGC+CGG + chr3_2:84289231-84289250 Msa0432160:CDS 55.0%
GCTTTGCCGGATACACAAGC+TGG + chr3_2:84289244-84289263 Msa0432160:CDS 55.0%
GTTGGTGTGTGCCATCAAGC+TGG + chr3_2:84289388-84289407 Msa0432160:CDS 55.0%
GAACGAAGGTTGGGGTGCGA+GGG - chr3_2:84288203-84288222 None:intergenic 60.0%
AGAACGAAGGTTGGGGTGCG+AGG - chr3_2:84288204-84288223 None:intergenic 60.0%
GAACGAAGGTTGGGGTGCGA+GGG - chr3_2:84288203-84288222 None:intergenic 60.0%
AGAACGAAGGTTGGGGTGCG+AGG - chr3_2:84288204-84288223 None:intergenic 60.0%
TGGGGTGCGAGGGTTGAGTC+TGG - chr3_2:84288193-84288212 None:intergenic 65.0%
TGGGGTGCGAGGGTTGAGTC+TGG - chr3_2:84288193-84288212 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 84288040 84289766 84288040 ID=Msa0432160;Name=Msa0432160
chr3_2 mRNA 84288040 84289766 84288040 ID=Msa0432160-mRNA-1;Parent=Msa0432160;Name=Msa0432160-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0.5|1|1|1|2|238|387
chr3_2 exon 84288040 84288325 84288040 ID=Msa0432160-mRNA-1:exon:23740;Parent=Msa0432160-mRNA-1
chr3_2 exon 84288651 84289766 84288651 ID=Msa0432160-mRNA-1:exon:23741;Parent=Msa0432160-mRNA-1
chr3_2 CDS 84288040 84288325 84288040 ID=Msa0432160-mRNA-1:cds;Parent=Msa0432160-mRNA-1
chr3_2 CDS 84288651 84289528 84288651 ID=Msa0432160-mRNA-1:cds;Parent=Msa0432160-mRNA-1
chr3_2 three_prime_UTR 84289529 84289766 84289529 ID=Msa0432160-mRNA-1:three_prime_utr;Parent=Msa0432160-mRNA-1
Gene Sequence

>Msa0432160

ATGTTAACGACTGATATCAATTTTTATTTTTTTGAAGGATTAACGACTGATATCTTATTGTCGCATACCAAAAATTATCACACCCCAGGCCCAATTGTAAACGACGTCATTTTTAATCAAAACGACCCCACGTTCTCACCGAGTACAAATCCAGACTCAACCCTCGCACCCCAACCTTCGTTCTTCTCTCTCTCTTCCATTTCCCAATCCCTTTGCTTCGTTGACTCCAAAATCGATCTTCGTCGAGGATCGGTGATACTTCAACCTTCGTTTTCTTCACTACAAGATCTGAGTGGTTTTGATTTGGATTTGGATTTGGATTTTGCTGTGTGTGAAATGACGGATTTAACGAAGGATTTACAGAAAGGAGATTCGATTCAAATCAGAGAGGTATGGAACGATAATCTGGAAGAGGAATTTGTGTTGATCCGTGAAATTGTTGATAAGTATAACTATGTTGCGATGGATACAGAGTTTCCTGGTGTTGTTCTTCGGCCTGTTGGGAATTTTAAGCATATTAACGATTTTAACTATCAGACTTTGAAGGATAACGTTGATATGTTGAAGCTGATTCAGTTAGGTTTAACTTTTTCTGATGAGAATGGAAATTTACCTACCTGTGGCACTGATAGTCCTTGCATCTGGCAATTCAATTTTCGCGAGTTTAATGTTAGCGAAGATATTTTCGCTGCTGATTCGATCGAGCTTTTGCGCCAATGCGGAATTGATTTTAAGAAGAACAGCGAGCAAGGAATCGACGTGAACAGATTTGGAGAACTTCTGATGTCATCCGGGATTGTGTTGAATGATAATGTTCATTGGGTTACTTTTCACAGTGGTTATGATTTTGGTTATCTTTTGAAGCTTTTGACGTGCAGGGCTTTGCCGGATACACAAGCTGGATTTTTCGATTTGATCGGGATTTATTTCCCGATTGTGTATGATATCAAACATTTGATGAAGTTCTGTAACAGTCTTCATGGTGGTTTGAACAAGCTTGCGGAATTGCTGGAAGTTGAGAGGGTTGGTGTGTGCCATCAAGCTGGATCGGATAGTTTACTCACAGCTTGTACATTTAGGAAGTTGAGGGAAACATTCTTCAACGGCGAAACAGAGAAATATTCTGGTGTGTTGTATGGATTAGGTGTTGAGAAAACAGACTAA

Protein sequence

>Msa0432160

MLTTDINFYFFEGLTTDILLSHTKNYHTPGPIVNDVIFNQNDPTFSPSTNPDSTLAPQPSFFSLSSISQSLCFVDSKIDLRRGSVILQPSFSSLQDLSGFDLDLDLDFAVCEMTDLTKDLQKGDSIQIREVWNDNLEEEFVLIREIVDKYNYVAMDTEFPGVVLRPVGNFKHINDFNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSPCIWQFNFREFNVSEDIFAADSIELLRQCGIDFKKNSEQGIDVNRFGELLMSSGIVLNDNVHWVTFHSGYDFGYLLKLLTCRALPDTQAGFFDLIGIYFPIVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTACTFRKLRETFFNGETEKYSGVLYGLGVEKTD*