AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0476680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0476680 MtrunA17_Chr3g0137081 99.273 275 2 0 98 372 1 275 0.0 564
Msa0476680 MtrunA17_Chr4g0001271 81.887 265 47 1 106 369 7 271 2.21e-162 456
Msa0476680 MtrunA17_Chr7g0267081 54.851 268 112 5 110 369 22 288 4.68e-94 283
Msa0476680 MtrunA17_Chr8g0386691 50.752 266 127 4 107 368 5 270 3.71e-89 270
Msa0476680 MtrunA17_Chr8g0386681 50.746 268 124 5 107 368 5 270 4.04e-87 264
Msa0476680 MtrunA17_Chr1g0177961 46.497 314 111 5 110 366 15 328 4.25e-85 261
Msa0476680 MtrunA17_Chr5g0418281 49.281 278 131 6 101 370 7 282 1.32e-81 250
Msa0476680 MtrunA17_Chr5g0447661 48.276 261 131 4 111 368 13 272 2.05e-80 247
Msa0476680 MtrunA17_Chr2g0321651 48.592 284 128 10 98 368 1 279 2.40e-74 232
Msa0476680 MtrunA17_Chr3g0144801 42.491 273 122 6 101 369 6 247 1.02e-67 214
Msa0476680 MtrunA17_Chr7g0228321 76.786 56 13 0 221 276 10 65 5.43e-25 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0476680 AT2G32070.1 78.030 264 57 1 107 369 6 269 1.20e-153 434
Msa0476680 AT1G80780.1 77.567 263 59 0 107 369 6 268 1.80e-152 431
Msa0476680 AT1G80780.2 77.567 263 59 0 107 369 6 268 1.80e-152 431
Msa0476680 AT1G80780.3 77.567 263 59 0 107 369 6 268 1.82e-152 431
Msa0476680 AT5G10960.1 76.806 263 61 0 107 369 6 268 2.21e-152 431
Msa0476680 AT1G15920.2 62.547 267 94 1 106 366 9 275 1.83e-118 345
Msa0476680 AT1G15920.1 62.547 267 94 1 106 366 9 275 1.83e-118 345
Msa0476680 AT3G44260.1 53.846 273 118 7 103 368 8 279 4.09e-91 275
Msa0476680 AT5G22250.1 52.985 268 118 7 109 368 10 277 3.95e-88 267
Msa0476680 AT1G06450.1 36.680 259 146 7 114 367 10 255 9.71e-45 158
Msa0476680 AT1G61470.1 35.743 249 140 6 115 357 4 238 3.35e-36 133
Msa0476680 AT3G44240.1 37.719 228 128 6 127 351 3 219 5.15e-35 129
Msa0476680 AT1G27820.1 34.034 238 141 6 115 347 8 234 4.35e-30 117
Msa0476680 AT1G27890.1 34.454 238 140 6 115 347 3 229 1.56e-27 110

Find 78 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCACAGTGGTTATGATTT+TGG 0.162019 3_3:+80512745 Msa0476680:CDS
TCCTCGACGAAGATCGATTT+TGG 0.237909 3_3:-80511824 None:intergenic
AAGAAAGAACAAAGTATAAT+TGG 0.288547 3_3:+80513087 Msa0476680:three_prime_UTR
TACTCACAGCTTGTACATTT+AGG 0.316594 3_3:+80512974 Msa0476680:CDS
CACTTCTGCCAGAAAGAAAA+TGG 0.325996 3_3:+80513160 Msa0476680:three_prime_UTR
AAAATGACGTCGTTTACAAT+TGG 0.327114 3_3:-80511688 None:intergenic
GGAATCGACGTGAACAGATT+TGG 0.350401 3_3:+80512667 Msa0476680:CDS
GAGAGAGAAGAACGAAGGTT+GGG 0.357475 3_3:-80511767 None:intergenic
GAACAAGCTTGCGGAATTGC+TGG 0.383855 3_3:+80512906 Msa0476680:CDS
AGAGAGAGAAGAACGAAGGT+TGG 0.387895 3_3:-80511768 None:intergenic
AGAGGTATGGAACGATAATC+TGG 0.393193 3_3:+80512303 Msa0476680:CDS
TTTGACGTGCAGGGCTTTGC+CGG 0.395764 3_3:+80512783 Msa0476680:CDS
AGTTTCCTGGTGTTGTTCTT+CGG 0.398208 3_3:+80512389 Msa0476680:CDS
GGCGAAACAGAGAAATATTC+TGG 0.400040 3_3:+80513021 Msa0476680:CDS
CGTCGTTTACAATTGGGCCT+GGG 0.407925 3_3:-80511681 None:intergenic
TGGGGTGCGAGGGTTGAGTC+TGG 0.408850 3_3:-80511748 None:intergenic
TATACTTATCAACAATTTCA+CGG 0.412664 3_3:-80512345 None:intergenic
AACTATCCGATCCAGCTTGA+TGG 0.415822 3_3:-80512951 None:intergenic
TCTGGTGTGTTGTATGGATT+AGG 0.418411 3_3:+80513039 Msa0476680:CDS
AAGTTCTGTAACAGTCTTCA+TGG 0.419529 3_3:+80512877 Msa0476680:CDS
GGTGTTGTTCTTCGGCCTGT+TGG 0.419609 3_3:+80512397 Msa0476680:CDS
AAATGACGTCGTTTACAATT+GGG 0.420982 3_3:-80511687 None:intergenic
AAATATTCTGGTGTGTTGTA+TGG 0.424598 3_3:+80513033 Msa0476680:CDS
GGAGAACTTCTGATGTCATC+CGG 0.426593 3_3:+80512688 Msa0476680:CDS
GTGTTGTTCTTCGGCCTGTT+GGG 0.429390 3_3:+80512398 Msa0476680:CDS
ACGTCGTTTACAATTGGGCC+TGG 0.432005 3_3:-80511682 None:intergenic
CGGAATTGCTGGAAGTTGAG+AGG 0.432657 3_3:+80512917 Msa0476680:CDS
GTCAACGAAGCAAAGGGATT+GGG 0.433233 3_3:-80511800 None:intergenic
ATGTTGAAGCTGATTCAGTT+AGG 0.437086 3_3:+80512475 Msa0476680:CDS
TGTTGAATGATAATGTTCAT+TGG 0.444197 3_3:+80512716 Msa0476680:CDS
GAAGCAAAGGGATTGGGAAA+TGG 0.457781 3_3:-80511794 None:intergenic
ATATGCTTAAAATTCCCAAC+AGG 0.468744 3_3:-80512412 None:intergenic
TGTTTGATATCATACACAAT+CGG 0.482779 3_3:-80512847 None:intergenic
TTGTACATTTAGGAAGTTGA+GGG 0.486839 3_3:+80512984 Msa0476680:CDS
TTAACGAAGGATTTACAGAA+AGG 0.493060 3_3:+80512262 Msa0476680:CDS
GTTGAATGATAATGTTCATT+GGG 0.498652 3_3:+80512717 Msa0476680:CDS
GTTTGATATCATACACAATC+GGG 0.509746 3_3:-80512846 None:intergenic
GCACTGATAGTCCTTGCATC+TGG 0.511115 3_3:+80512539 Msa0476680:CDS
CGATTCAAATCAGAGAGGTA+TGG 0.516845 3_3:+80512290 Msa0476680:CDS
GTTGGTGTGTGCCATCAAGC+TGG 0.516903 3_3:+80512940 Msa0476680:CDS
TTTGGAGTCAACGAAGCAAA+GGG 0.519348 3_3:-80511806 None:intergenic
TCTTAAAATCAATTCCGCAT+TGG 0.519845 3_3:-80512630 None:intergenic
GCGATGGATACAGAGTTTCC+TGG 0.522554 3_3:+80512376 Msa0476680:CDS
AGAACGAAGGTTGGGGTGCG+AGG 0.534010 3_3:-80511759 None:intergenic
GTCGTTTACAATTGGGCCTG+GGG 0.534292 3_3:-80511680 None:intergenic
AGTCAACGAAGCAAAGGGAT+TGG 0.535953 3_3:-80511801 None:intergenic
AGAGAGAAGAACGAAGGTTG+GGG 0.537636 3_3:-80511766 None:intergenic
CAAGCTAACAAAACAAGCTA+AGG 0.539782 3_3:-80513238 None:intergenic
GAGAACTTCTGATGTCATCC+GGG 0.551352 3_3:+80512689 Msa0476680:CDS
TTTAAGAAGAACAGCGAGCA+AGG 0.554251 3_3:+80512646 Msa0476680:CDS
ATTTGTACTCGGTGAGAACG+TGG 0.555563 3_3:-80511725 None:intergenic
CTTGTACATTTAGGAAGTTG+AGG 0.555789 3_3:+80512983 Msa0476680:CDS
AATCGATCTTCGTCGAGGAT+CGG 0.557321 3_3:+80511828 Msa0476680:CDS
GCTTTGCCGGATACACAAGC+TGG 0.557400 3_3:+80512796 Msa0476680:CDS
ATGGAACGATAATCTGGAAG+AGG 0.557973 3_3:+80512309 Msa0476680:CDS
GCAAGGACTATCAGTGCCAC+AGG 0.564639 3_3:-80512533 None:intergenic
TGGTGGTTTGAACAAGCTTG+CGG 0.579595 3_3:+80512897 Msa0476680:CDS
TTTGTACTCGGTGAGAACGT+GGG 0.579728 3_3:-80511724 None:intergenic
GAAGAGAGAGAGAAGAACGA+AGG 0.584387 3_3:-80511772 None:intergenic
GAACGAAGGTTGGGGTGCGA+GGG 0.586799 3_3:-80511758 None:intergenic
GTTGAGTCTGGATTTGTACT+CGG 0.590132 3_3:-80511736 None:intergenic
AAATTGAATTGCCAGATGCA+AGG 0.592828 3_3:-80512550 None:intergenic
TAAGTATAACTATGTTGCGA+TGG 0.597473 3_3:+80512360 Msa0476680:CDS
TTGCTGGAAGTTGAGAGGGT+TGG 0.602040 3_3:+80512922 Msa0476680:CDS
ATTATCATTCAACACAATCC+CGG 0.602210 3_3:-80512707 None:intergenic
TTGAGGGAAACATTCTTCAA+CGG 0.604445 3_3:+80513000 Msa0476680:CDS
TTGTACTCGGTGAGAACGTG+GGG 0.612039 3_3:-80511723 None:intergenic
ACAGGCCGAAGAACAACACC+AGG 0.618032 3_3:-80512394 None:intergenic
GGAATTGCTGGAAGTTGAGA+GGG 0.625969 3_3:+80512918 Msa0476680:CDS
GGACTATCAGTGCCACAGGT+AGG 0.632411 3_3:-80512529 None:intergenic
TGAAATGACGGATTTAACGA+AGG 0.651784 3_3:+80512249 Msa0476680:CDS
TGTGTGCCATCAAGCTGGAT+CGG 0.653723 3_3:+80512945 Msa0476680:CDS
TTCTGTAACAGTCTTCATGG+TGG 0.661335 3_3:+80512880 Msa0476680:CDS
TCCAAAATCGATCTTCGTCG+AGG 0.661811 3_3:+80511823 Msa0476680:CDS
AATGGAAATTTACCTACCTG+TGG 0.695151 3_3:+80512517 Msa0476680:CDS
CCTTGTAGTGAAGAAAACGA+AGG 0.744080 3_3:-80511862 None:intergenic
AGATTCGATTCAAATCAGAG+AGG 0.775869 3_3:+80512285 Msa0476680:CDS
GATTTGATAACAGATCTGAG+TGG 0.798204 3_3:+80512196 Msa0476680:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATACTTATCAACAATTTCA+CGG - chr3_3:80512348-80512367 None:intergenic 20.0%
!! AAGAAAGAACAAAGTATAAT+TGG + chr3_3:80513087-80513106 Msa0476680:three_prime_UTR 20.0%
!! TATACTTATCAACAATTTCA+CGG - chr3_3:80512348-80512367 None:intergenic 20.0%
!! AAGAAAGAACAAAGTATAAT+TGG + chr3_3:80513087-80513106 Msa0476680:three_prime_UTR 20.0%
! AGTTAATAGAGTGAAGAAAA+CGG - chr3_3:80511898-80511917 None:intergenic 25.0%
!!! TTTTAACTATCAGACTTTGA+AGG + chr3_3:80512441-80512460 Msa0476680:CDS 25.0%
!!! TTAACTTTTTCTGATGAGAA+TGG + chr3_3:80512499-80512518 Msa0476680:CDS 25.0%
!! TGTTGAATGATAATGTTCAT+TGG + chr3_3:80512716-80512735 Msa0476680:CDS 25.0%
!! GTTGAATGATAATGTTCATT+GGG + chr3_3:80512717-80512736 Msa0476680:CDS 25.0%
! TGTTTGATATCATACACAAT+CGG - chr3_3:80512850-80512869 None:intergenic 25.0%
! AGTTAATAGAGTGAAGAAAA+CGG - chr3_3:80511898-80511917 None:intergenic 25.0%
!!! TTTTAACTATCAGACTTTGA+AGG + chr3_3:80512441-80512460 Msa0476680:CDS 25.0%
!!! TTAACTTTTTCTGATGAGAA+TGG + chr3_3:80512499-80512518 Msa0476680:CDS 25.0%
!! TGTTGAATGATAATGTTCAT+TGG + chr3_3:80512716-80512735 Msa0476680:CDS 25.0%
!! GTTGAATGATAATGTTCATT+GGG + chr3_3:80512717-80512736 Msa0476680:CDS 25.0%
! TGTTTGATATCATACACAAT+CGG - chr3_3:80512850-80512869 None:intergenic 25.0%
AAATGACGTCGTTTACAATT+GGG - chr3_3:80511690-80511709 None:intergenic 30.0%
AAAATGACGTCGTTTACAAT+TGG - chr3_3:80511691-80511710 None:intergenic 30.0%
AATCGAATTGAAGTGAACTA+GGG - chr3_3:80511961-80511980 None:intergenic 30.0%
AAATCGAATTGAAGTGAACT+AGG - chr3_3:80511962-80511981 None:intergenic 30.0%
! TTTGTTGCTGTAGATTTGTT+AGG + chr3_3:80512145-80512164 Msa0476680:intron 30.0%
TTAACGAAGGATTTACAGAA+AGG + chr3_3:80512262-80512281 Msa0476680:CDS 30.0%
TAAGTATAACTATGTTGCGA+TGG + chr3_3:80512360-80512379 Msa0476680:CDS 30.0%
ATATGCTTAAAATTCCCAAC+AGG - chr3_3:80512415-80512434 None:intergenic 30.0%
TCTTAAAATCAATTCCGCAT+TGG - chr3_3:80512633-80512652 None:intergenic 30.0%
ATTATCATTCAACACAATCC+CGG - chr3_3:80512710-80512729 None:intergenic 30.0%
! TTTCACAGTGGTTATGATTT+TGG + chr3_3:80512745-80512764 Msa0476680:CDS 30.0%
GTTTGATATCATACACAATC+GGG - chr3_3:80512849-80512868 None:intergenic 30.0%
TTGTACATTTAGGAAGTTGA+GGG + chr3_3:80512984-80513003 Msa0476680:CDS 30.0%
AAATATTCTGGTGTGTTGTA+TGG + chr3_3:80513033-80513052 Msa0476680:CDS 30.0%
! AACAACAACCATTTTCTTTC+TGG - chr3_3:80513171-80513190 None:intergenic 30.0%
AAATGACGTCGTTTACAATT+GGG - chr3_3:80511690-80511709 None:intergenic 30.0%
AAAATGACGTCGTTTACAAT+TGG - chr3_3:80511691-80511710 None:intergenic 30.0%
AATCGAATTGAAGTGAACTA+GGG - chr3_3:80511961-80511980 None:intergenic 30.0%
AAATCGAATTGAAGTGAACT+AGG - chr3_3:80511962-80511981 None:intergenic 30.0%
! TTTGTTGCTGTAGATTTGTT+AGG + chr3_3:80512145-80512164 Msa0476680:intron 30.0%
TTAACGAAGGATTTACAGAA+AGG + chr3_3:80512262-80512281 Msa0476680:CDS 30.0%
TAAGTATAACTATGTTGCGA+TGG + chr3_3:80512360-80512379 Msa0476680:CDS 30.0%
ATATGCTTAAAATTCCCAAC+AGG - chr3_3:80512415-80512434 None:intergenic 30.0%
TCTTAAAATCAATTCCGCAT+TGG - chr3_3:80512633-80512652 None:intergenic 30.0%
ATTATCATTCAACACAATCC+CGG - chr3_3:80512710-80512729 None:intergenic 30.0%
! TTTCACAGTGGTTATGATTT+TGG + chr3_3:80512745-80512764 Msa0476680:CDS 30.0%
GTTTGATATCATACACAATC+GGG - chr3_3:80512849-80512868 None:intergenic 30.0%
TTGTACATTTAGGAAGTTGA+GGG + chr3_3:80512984-80513003 Msa0476680:CDS 30.0%
AAATATTCTGGTGTGTTGTA+TGG + chr3_3:80513033-80513052 Msa0476680:CDS 30.0%
! AACAACAACCATTTTCTTTC+TGG - chr3_3:80513171-80513190 None:intergenic 30.0%
! TAACTACTACTTCGTTTTCC+AGG + chr3_3:80511913-80511932 Msa0476680:intron 35.0%
! AACTACTACTTCGTTTTCCA+GGG + chr3_3:80511914-80511933 Msa0476680:intron 35.0%
ACTGAATTTGAAGATTCTGC+AGG + chr3_3:80512085-80512104 Msa0476680:intron 35.0%
!!! GTTAGGTTTTGAGATCTGAA+TGG + chr3_3:80512162-80512181 Msa0476680:intron 35.0%
! GATTTGATAACAGATCTGAG+TGG + chr3_3:80512196-80512215 Msa0476680:intron 35.0%
!!! AGATCTGAGTGGTTTTGATT+TGG + chr3_3:80512207-80512226 Msa0476680:intron 35.0%
!!! GAGTGGTTTTGATTTGGATT+TGG + chr3_3:80512213-80512232 Msa0476680:CDS 35.0%
!! TTTTGCTGTGTGTGAAATGA+CGG + chr3_3:80512237-80512256 Msa0476680:CDS 35.0%
!! TGAAATGACGGATTTAACGA+AGG + chr3_3:80512249-80512268 Msa0476680:CDS 35.0%
AGATTCGATTCAAATCAGAG+AGG + chr3_3:80512285-80512304 Msa0476680:CDS 35.0%
! ATGTTGAAGCTGATTCAGTT+AGG + chr3_3:80512475-80512494 Msa0476680:CDS 35.0%
AATGGAAATTTACCTACCTG+TGG + chr3_3:80512517-80512536 Msa0476680:CDS 35.0%
AAATTGAATTGCCAGATGCA+AGG - chr3_3:80512553-80512572 None:intergenic 35.0%
AAAAATCCAGCTTGTGTATC+CGG - chr3_3:80512805-80512824 None:intergenic 35.0%
!! GCTGGATTTTTCGATTTGAT+CGG + chr3_3:80512814-80512833 Msa0476680:CDS 35.0%
!! CTGGATTTTTCGATTTGATC+GGG + chr3_3:80512815-80512834 Msa0476680:CDS 35.0%
AAGTTCTGTAACAGTCTTCA+TGG + chr3_3:80512877-80512896 Msa0476680:CDS 35.0%
TACTCACAGCTTGTACATTT+AGG + chr3_3:80512974-80512993 Msa0476680:CDS 35.0%
CTTGTACATTTAGGAAGTTG+AGG + chr3_3:80512983-80513002 Msa0476680:CDS 35.0%
TTGAGGGAAACATTCTTCAA+CGG + chr3_3:80513000-80513019 Msa0476680:CDS 35.0%
CAAGCTAACAAAACAAGCTA+AGG - chr3_3:80513241-80513260 None:intergenic 35.0%
! TAACTACTACTTCGTTTTCC+AGG + chr3_3:80511913-80511932 Msa0476680:intron 35.0%
! AACTACTACTTCGTTTTCCA+GGG + chr3_3:80511914-80511933 Msa0476680:intron 35.0%
ACTGAATTTGAAGATTCTGC+AGG + chr3_3:80512085-80512104 Msa0476680:intron 35.0%
!!! GTTAGGTTTTGAGATCTGAA+TGG + chr3_3:80512162-80512181 Msa0476680:intron 35.0%
! GATTTGATAACAGATCTGAG+TGG + chr3_3:80512196-80512215 Msa0476680:intron 35.0%
!!! AGATCTGAGTGGTTTTGATT+TGG + chr3_3:80512207-80512226 Msa0476680:intron 35.0%
!!! GAGTGGTTTTGATTTGGATT+TGG + chr3_3:80512213-80512232 Msa0476680:CDS 35.0%
!! TTTTGCTGTGTGTGAAATGA+CGG + chr3_3:80512237-80512256 Msa0476680:CDS 35.0%
!! TGAAATGACGGATTTAACGA+AGG + chr3_3:80512249-80512268 Msa0476680:CDS 35.0%
AGATTCGATTCAAATCAGAG+AGG + chr3_3:80512285-80512304 Msa0476680:CDS 35.0%
! ATGTTGAAGCTGATTCAGTT+AGG + chr3_3:80512475-80512494 Msa0476680:CDS 35.0%
AATGGAAATTTACCTACCTG+TGG + chr3_3:80512517-80512536 Msa0476680:CDS 35.0%
AAATTGAATTGCCAGATGCA+AGG - chr3_3:80512553-80512572 None:intergenic 35.0%
AAAAATCCAGCTTGTGTATC+CGG - chr3_3:80512805-80512824 None:intergenic 35.0%
!! GCTGGATTTTTCGATTTGAT+CGG + chr3_3:80512814-80512833 Msa0476680:CDS 35.0%
!! CTGGATTTTTCGATTTGATC+GGG + chr3_3:80512815-80512834 Msa0476680:CDS 35.0%
AAGTTCTGTAACAGTCTTCA+TGG + chr3_3:80512877-80512896 Msa0476680:CDS 35.0%
TACTCACAGCTTGTACATTT+AGG + chr3_3:80512974-80512993 Msa0476680:CDS 35.0%
CTTGTACATTTAGGAAGTTG+AGG + chr3_3:80512983-80513002 Msa0476680:CDS 35.0%
TTGAGGGAAACATTCTTCAA+CGG + chr3_3:80513000-80513019 Msa0476680:CDS 35.0%
CAAGCTAACAAAACAAGCTA+AGG - chr3_3:80513241-80513260 None:intergenic 35.0%
ACCAAAAATTATCACACCCC+AGG + chr3_3:80511664-80511683 Msa0476680:CDS 40.0%
GTTGAGTCTGGATTTGTACT+CGG - chr3_3:80511739-80511758 None:intergenic 40.0%
! TTTGGAGTCAACGAAGCAAA+GGG - chr3_3:80511809-80511828 None:intergenic 40.0%
!!! TTTTGGAGTCAACGAAGCAA+AGG - chr3_3:80511810-80511829 None:intergenic 40.0%
CCTTGTAGTGAAGAAAACGA+AGG - chr3_3:80511865-80511884 None:intergenic 40.0%
! CCTTCGTTTTCTTCACTACA+AGG + chr3_3:80511862-80511881 Msa0476680:CDS 40.0%
TTGAAGTGAACTAGGGTTTG+AGG - chr3_3:80511954-80511973 None:intergenic 40.0%
AGCTTCGAATCAAACGTATG+AGG - chr3_3:80512059-80512078 None:intergenic 40.0%
CGATTCAAATCAGAGAGGTA+TGG + chr3_3:80512290-80512309 Msa0476680:CDS 40.0%
! AGAGGTATGGAACGATAATC+TGG + chr3_3:80512303-80512322 Msa0476680:CDS 40.0%
ATGGAACGATAATCTGGAAG+AGG + chr3_3:80512309-80512328 Msa0476680:CDS 40.0%
!! AGTTTCCTGGTGTTGTTCTT+CGG + chr3_3:80512389-80512408 Msa0476680:CDS 40.0%
TTTAAGAAGAACAGCGAGCA+AGG + chr3_3:80512646-80512665 Msa0476680:CDS 40.0%
!!! CATTGGGTTACTTTTCACAG+TGG + chr3_3:80512733-80512752 Msa0476680:CDS 40.0%
!!! TTTTGAAGCTTTTGACGTGC+AGG + chr3_3:80512773-80512792 Msa0476680:CDS 40.0%
!! TTTGAAGCTTTTGACGTGCA+GGG + chr3_3:80512774-80512793 Msa0476680:CDS 40.0%
TTCTGTAACAGTCTTCATGG+TGG + chr3_3:80512880-80512899 Msa0476680:CDS 40.0%
GGCGAAACAGAGAAATATTC+TGG + chr3_3:80513021-80513040 Msa0476680:CDS 40.0%
TCTGGTGTGTTGTATGGATT+AGG + chr3_3:80513039-80513058 Msa0476680:CDS 40.0%
CACTTCTGCCAGAAAGAAAA+TGG + chr3_3:80513160-80513179 Msa0476680:three_prime_UTR 40.0%
ACCAAAAATTATCACACCCC+AGG + chr3_3:80511664-80511683 Msa0476680:CDS 40.0%
GTTGAGTCTGGATTTGTACT+CGG - chr3_3:80511739-80511758 None:intergenic 40.0%
! TTTGGAGTCAACGAAGCAAA+GGG - chr3_3:80511809-80511828 None:intergenic 40.0%
!!! TTTTGGAGTCAACGAAGCAA+AGG - chr3_3:80511810-80511829 None:intergenic 40.0%
CCTTGTAGTGAAGAAAACGA+AGG - chr3_3:80511865-80511884 None:intergenic 40.0%
! CCTTCGTTTTCTTCACTACA+AGG + chr3_3:80511862-80511881 Msa0476680:CDS 40.0%
TTGAAGTGAACTAGGGTTTG+AGG - chr3_3:80511954-80511973 None:intergenic 40.0%
AGCTTCGAATCAAACGTATG+AGG - chr3_3:80512059-80512078 None:intergenic 40.0%
CGATTCAAATCAGAGAGGTA+TGG + chr3_3:80512290-80512309 Msa0476680:CDS 40.0%
! AGAGGTATGGAACGATAATC+TGG + chr3_3:80512303-80512322 Msa0476680:CDS 40.0%
ATGGAACGATAATCTGGAAG+AGG + chr3_3:80512309-80512328 Msa0476680:CDS 40.0%
!! AGTTTCCTGGTGTTGTTCTT+CGG + chr3_3:80512389-80512408 Msa0476680:CDS 40.0%
TTTAAGAAGAACAGCGAGCA+AGG + chr3_3:80512646-80512665 Msa0476680:CDS 40.0%
!!! CATTGGGTTACTTTTCACAG+TGG + chr3_3:80512733-80512752 Msa0476680:CDS 40.0%
!!! TTTTGAAGCTTTTGACGTGC+AGG + chr3_3:80512773-80512792 Msa0476680:CDS 40.0%
!! TTTGAAGCTTTTGACGTGCA+GGG + chr3_3:80512774-80512793 Msa0476680:CDS 40.0%
TTCTGTAACAGTCTTCATGG+TGG + chr3_3:80512880-80512899 Msa0476680:CDS 40.0%
GGCGAAACAGAGAAATATTC+TGG + chr3_3:80513021-80513040 Msa0476680:CDS 40.0%
TCTGGTGTGTTGTATGGATT+AGG + chr3_3:80513039-80513058 Msa0476680:CDS 40.0%
CACTTCTGCCAGAAAGAAAA+TGG + chr3_3:80513160-80513179 Msa0476680:three_prime_UTR 40.0%
! GCCTGGGGTGTGATAATTTT+TGG - chr3_3:80511668-80511687 None:intergenic 45.0%
! TTTGTACTCGGTGAGAACGT+GGG - chr3_3:80511727-80511746 None:intergenic 45.0%
! ATTTGTACTCGGTGAGAACG+TGG - chr3_3:80511728-80511747 None:intergenic 45.0%
AGAGAGAAGAACGAAGGTTG+GGG - chr3_3:80511769-80511788 None:intergenic 45.0%
GAGAGAGAAGAACGAAGGTT+GGG - chr3_3:80511770-80511789 None:intergenic 45.0%
AGAGAGAGAAGAACGAAGGT+TGG - chr3_3:80511771-80511790 None:intergenic 45.0%
GAAGAGAGAGAGAAGAACGA+AGG - chr3_3:80511775-80511794 None:intergenic 45.0%
GAAGCAAAGGGATTGGGAAA+TGG - chr3_3:80511797-80511816 None:intergenic 45.0%
GTCAACGAAGCAAAGGGATT+GGG - chr3_3:80511803-80511822 None:intergenic 45.0%
AGTCAACGAAGCAAAGGGAT+TGG - chr3_3:80511804-80511823 None:intergenic 45.0%
TCCAAAATCGATCTTCGTCG+AGG + chr3_3:80511823-80511842 Msa0476680:CDS 45.0%
!! TCCTCGACGAAGATCGATTT+TGG - chr3_3:80511827-80511846 None:intergenic 45.0%
AATCGATCTTCGTCGAGGAT+CGG + chr3_3:80511828-80511847 Msa0476680:CDS 45.0%
! AGGTTTGAAGTGAGAAACCC+TGG - chr3_3:80511934-80511953 None:intergenic 45.0%
GGAATCGACGTGAACAGATT+TGG + chr3_3:80512667-80512686 Msa0476680:CDS 45.0%
GGAGAACTTCTGATGTCATC+CGG + chr3_3:80512688-80512707 Msa0476680:CDS 45.0%
GAGAACTTCTGATGTCATCC+GGG + chr3_3:80512689-80512708 Msa0476680:CDS 45.0%
TGGTGGTTTGAACAAGCTTG+CGG + chr3_3:80512897-80512916 Msa0476680:CDS 45.0%
GGAATTGCTGGAAGTTGAGA+GGG + chr3_3:80512918-80512937 Msa0476680:CDS 45.0%
AACTATCCGATCCAGCTTGA+TGG - chr3_3:80512954-80512973 None:intergenic 45.0%
! GCCTGGGGTGTGATAATTTT+TGG - chr3_3:80511668-80511687 None:intergenic 45.0%
! TTTGTACTCGGTGAGAACGT+GGG - chr3_3:80511727-80511746 None:intergenic 45.0%
! ATTTGTACTCGGTGAGAACG+TGG - chr3_3:80511728-80511747 None:intergenic 45.0%
AGAGAGAAGAACGAAGGTTG+GGG - chr3_3:80511769-80511788 None:intergenic 45.0%
GAGAGAGAAGAACGAAGGTT+GGG - chr3_3:80511770-80511789 None:intergenic 45.0%
AGAGAGAGAAGAACGAAGGT+TGG - chr3_3:80511771-80511790 None:intergenic 45.0%
GAAGAGAGAGAGAAGAACGA+AGG - chr3_3:80511775-80511794 None:intergenic 45.0%
GAAGCAAAGGGATTGGGAAA+TGG - chr3_3:80511797-80511816 None:intergenic 45.0%
GTCAACGAAGCAAAGGGATT+GGG - chr3_3:80511803-80511822 None:intergenic 45.0%
AGTCAACGAAGCAAAGGGAT+TGG - chr3_3:80511804-80511823 None:intergenic 45.0%
TCCAAAATCGATCTTCGTCG+AGG + chr3_3:80511823-80511842 Msa0476680:CDS 45.0%
!! TCCTCGACGAAGATCGATTT+TGG - chr3_3:80511827-80511846 None:intergenic 45.0%
AATCGATCTTCGTCGAGGAT+CGG + chr3_3:80511828-80511847 Msa0476680:CDS 45.0%
! AGGTTTGAAGTGAGAAACCC+TGG - chr3_3:80511934-80511953 None:intergenic 45.0%
GGAATCGACGTGAACAGATT+TGG + chr3_3:80512667-80512686 Msa0476680:CDS 45.0%
GGAGAACTTCTGATGTCATC+CGG + chr3_3:80512688-80512707 Msa0476680:CDS 45.0%
GAGAACTTCTGATGTCATCC+GGG + chr3_3:80512689-80512708 Msa0476680:CDS 45.0%
TGGTGGTTTGAACAAGCTTG+CGG + chr3_3:80512897-80512916 Msa0476680:CDS 45.0%
GGAATTGCTGGAAGTTGAGA+GGG + chr3_3:80512918-80512937 Msa0476680:CDS 45.0%
AACTATCCGATCCAGCTTGA+TGG - chr3_3:80512954-80512973 None:intergenic 45.0%
GTCGTTTACAATTGGGCCTG+GGG - chr3_3:80511683-80511702 None:intergenic 50.0%
CGTCGTTTACAATTGGGCCT+GGG - chr3_3:80511684-80511703 None:intergenic 50.0%
ACGTCGTTTACAATTGGGCC+TGG - chr3_3:80511685-80511704 None:intergenic 50.0%
! TTGTACTCGGTGAGAACGTG+GGG - chr3_3:80511726-80511745 None:intergenic 50.0%
GCGATGGATACAGAGTTTCC+TGG + chr3_3:80512376-80512395 Msa0476680:CDS 50.0%
! GTGTTGTTCTTCGGCCTGTT+GGG + chr3_3:80512398-80512417 Msa0476680:CDS 50.0%
! GCACTGATAGTCCTTGCATC+TGG + chr3_3:80512539-80512558 Msa0476680:CDS 50.0%
! ATCGAGCTTTTGCGCCAATG+CGG + chr3_3:80512616-80512635 Msa0476680:CDS 50.0%
GAACAAGCTTGCGGAATTGC+TGG + chr3_3:80512906-80512925 Msa0476680:CDS 50.0%
CGGAATTGCTGGAAGTTGAG+AGG + chr3_3:80512917-80512936 Msa0476680:CDS 50.0%
TTGCTGGAAGTTGAGAGGGT+TGG + chr3_3:80512922-80512941 Msa0476680:CDS 50.0%
TGTGTGCCATCAAGCTGGAT+CGG + chr3_3:80512945-80512964 Msa0476680:CDS 50.0%
GTCGTTTACAATTGGGCCTG+GGG - chr3_3:80511683-80511702 None:intergenic 50.0%
CGTCGTTTACAATTGGGCCT+GGG - chr3_3:80511684-80511703 None:intergenic 50.0%
ACGTCGTTTACAATTGGGCC+TGG - chr3_3:80511685-80511704 None:intergenic 50.0%
! TTGTACTCGGTGAGAACGTG+GGG - chr3_3:80511726-80511745 None:intergenic 50.0%
GCGATGGATACAGAGTTTCC+TGG + chr3_3:80512376-80512395 Msa0476680:CDS 50.0%
! GTGTTGTTCTTCGGCCTGTT+GGG + chr3_3:80512398-80512417 Msa0476680:CDS 50.0%
! GCACTGATAGTCCTTGCATC+TGG + chr3_3:80512539-80512558 Msa0476680:CDS 50.0%
! ATCGAGCTTTTGCGCCAATG+CGG + chr3_3:80512616-80512635 Msa0476680:CDS 50.0%
GAACAAGCTTGCGGAATTGC+TGG + chr3_3:80512906-80512925 Msa0476680:CDS 50.0%
CGGAATTGCTGGAAGTTGAG+AGG + chr3_3:80512917-80512936 Msa0476680:CDS 50.0%
TTGCTGGAAGTTGAGAGGGT+TGG + chr3_3:80512922-80512941 Msa0476680:CDS 50.0%
TGTGTGCCATCAAGCTGGAT+CGG + chr3_3:80512945-80512964 Msa0476680:CDS 50.0%
ACAGGCCGAAGAACAACACC+AGG - chr3_3:80512397-80512416 None:intergenic 55.0%
!! GGTGTTGTTCTTCGGCCTGT+TGG + chr3_3:80512397-80512416 Msa0476680:CDS 55.0%
GGACTATCAGTGCCACAGGT+AGG - chr3_3:80512532-80512551 None:intergenic 55.0%
GCAAGGACTATCAGTGCCAC+AGG - chr3_3:80512536-80512555 None:intergenic 55.0%
TTTGACGTGCAGGGCTTTGC+CGG + chr3_3:80512783-80512802 Msa0476680:CDS 55.0%
GCTTTGCCGGATACACAAGC+TGG + chr3_3:80512796-80512815 Msa0476680:CDS 55.0%
GTTGGTGTGTGCCATCAAGC+TGG + chr3_3:80512940-80512959 Msa0476680:CDS 55.0%
ACAGGCCGAAGAACAACACC+AGG - chr3_3:80512397-80512416 None:intergenic 55.0%
!! GGTGTTGTTCTTCGGCCTGT+TGG + chr3_3:80512397-80512416 Msa0476680:CDS 55.0%
GGACTATCAGTGCCACAGGT+AGG - chr3_3:80512532-80512551 None:intergenic 55.0%
GCAAGGACTATCAGTGCCAC+AGG - chr3_3:80512536-80512555 None:intergenic 55.0%
TTTGACGTGCAGGGCTTTGC+CGG + chr3_3:80512783-80512802 Msa0476680:CDS 55.0%
GCTTTGCCGGATACACAAGC+TGG + chr3_3:80512796-80512815 Msa0476680:CDS 55.0%
GTTGGTGTGTGCCATCAAGC+TGG + chr3_3:80512940-80512959 Msa0476680:CDS 55.0%
GAACGAAGGTTGGGGTGCGA+GGG - chr3_3:80511761-80511780 None:intergenic 60.0%
AGAACGAAGGTTGGGGTGCG+AGG - chr3_3:80511762-80511781 None:intergenic 60.0%
GAACGAAGGTTGGGGTGCGA+GGG - chr3_3:80511761-80511780 None:intergenic 60.0%
AGAACGAAGGTTGGGGTGCG+AGG - chr3_3:80511762-80511781 None:intergenic 60.0%
TGGGGTGCGAGGGTTGAGTC+TGG - chr3_3:80511751-80511770 None:intergenic 65.0%
TGGGGTGCGAGGGTTGAGTC+TGG - chr3_3:80511751-80511770 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 80511637 80513318 80511637 ID=Msa0476680;Name=Msa0476680
chr3_3 mRNA 80511637 80513318 80511637 ID=Msa0476680-mRNA-1;Parent=Msa0476680;Name=Msa0476680-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0.5|1|0|0|2|238|372
chr3_3 exon 80511637 80511883 80511637 ID=Msa0476680-mRNA-1:exon:22055;Parent=Msa0476680-mRNA-1
chr3_3 exon 80512209 80513318 80512209 ID=Msa0476680-mRNA-1:exon:22056;Parent=Msa0476680-mRNA-1
chr3_3 CDS 80511637 80511883 80511637 ID=Msa0476680-mRNA-1:cds;Parent=Msa0476680-mRNA-1
chr3_3 CDS 80512209 80513080 80512209 ID=Msa0476680-mRNA-1:cds;Parent=Msa0476680-mRNA-1
chr3_3 three_prime_UTR 80513081 80513318 80513081 ID=Msa0476680-mRNA-1:three_prime_utr;Parent=Msa0476680-mRNA-1
Gene Sequence

>Msa0476680

TTAACGACTGATATCTTATTGTCGCATACCAAAAATTATCACACCCCAGGCCCAATTGTAAACGACGTCATTTTTAATCAAAACGACCCCACGTTCTCACCGAGTACAAATCCAGACTCAACCCTCGCACCCCAACCTTCGTTCTTCTCTCTCTCTTCCATTTCCCAATCCCTTTGCTTCGTTGACTCCAAAATCGATCTTCGTCGAGGATCGGTGATACTTCAACCTTCGTTTTCTTCACTACAAGATCTGAGTGGTTTTGATTTGGATTTGGATTTTGCTGTGTGTGAAATGACGGATTTAACGAAGGATTTACAGAAAGGAGATTCGATTCAAATCAGAGAGGTATGGAACGATAATCTGGAAGAGGAATTTGTGTTGATCCGTGAAATTGTTGATAAGTATAACTATGTTGCGATGGATACAGAGTTTCCTGGTGTTGTTCTTCGGCCTGTTGGGAATTTTAAGCATATTAACGATTTTAACTATCAGACTTTGAAGGATAACGTTGATATGTTGAAGCTGATTCAGTTAGGTTTAACTTTTTCTGATGAGAATGGAAATTTACCTACCTGTGGCACTGATAGTCCTTGCATCTGGCAATTCAATTTTCGCGAGTTTAATGTTAGCGAAGATATTTTCGCTGCTGATTCGATCGAGCTTTTGCGCCAATGCGGAATTGATTTTAAGAAGAACAGCGAGCAAGGAATCGACGTGAACAGATTTGGAGAACTTCTGATGTCATCCGGGATTGTGTTGAATGATAATGTTCATTGGGTTACTTTTCACAGTGGTTATGATTTTGGTTATCTTTTGAAGCTTTTGACGTGCAGGGCTTTGCCGGATACACAAGCTGGATTTTTCGATTTGATCGGGATTTATTTCCCGATTGTGTATGATATCAAACATTTGATGAAGTTCTGTAACAGTCTTCATGGTGGTTTGAACAAGCTTGCGGAATTGCTGGAAGTTGAGAGGGTTGGTGTGTGCCATCAAGCTGGATCGGATAGTTTACTCACAGCTTGTACATTTAGGAAGTTGAGGGAAACATTCTTCAACGGCGAAACAGAGAAATATTCTGGTGTGTTGTATGGATTAGGTGTTGAGAAAACAGACTAA

Protein sequence

>Msa0476680

LTTDILLSHTKNYHTPGPIVNDVIFNQNDPTFSPSTNPDSTLAPQPSFFSLSSISQSLCFVDSKIDLRRGSVILQPSFSSLQDLSGFDLDLDFAVCEMTDLTKDLQKGDSIQIREVWNDNLEEEFVLIREIVDKYNYVAMDTEFPGVVLRPVGNFKHINDFNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSPCIWQFNFREFNVSEDIFAADSIELLRQCGIDFKKNSEQGIDVNRFGELLMSSGIVLNDNVHWVTFHSGYDFGYLLKLLTCRALPDTQAGFFDLIGIYFPIVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTACTFRKLRETFFNGETEKYSGVLYGLGVEKTD*