Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0592820 | XP_003605108.2 | 89.597 | 298 | 31 | 0 | 1 | 298 | 1 | 298 | 0.0 | 516 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0126370 | Msa0592820 | 0.804974 | 1.669381e-49 | -8.615850e-47 |
| Msa0592820 | Msa0671590 | 0.967624 | 1.553317e-127 | -8.615850e-47 |
| Msa0592820 | Msa0685750 | 0.807791 | 4.253383e-50 | -8.615850e-47 |
| Msa0592820 | Msa0795250 | 0.819893 | 9.144541e-53 | -8.615850e-47 |
| Msa0592820 | Msa0832340 | 0.810707 | 1.008492e-50 | -8.615850e-47 |
| Msa0592820 | Msa0969520 | 0.815958 | 7.080129e-52 | -8.615850e-47 |
| Msa0592820 | Msa1240510 | 0.800062 | 1.718936e-48 | -8.615850e-47 |
| Msa0592820 | Msa1428390 | 0.978659 | 2.727851e-146 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0592820 | MtrunA17_Chr4g0011061 | 89.597 | 298 | 31 | 0 | 1 | 298 | 1 | 298 | 0.0 | 516 |
| Msa0592820 | MtrunA17_Chr4g0056861 | 50.556 | 180 | 81 | 3 | 71 | 242 | 129 | 308 | 2.81e-47 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0592820 | AT2G45380.3 | 51.460 | 274 | 112 | 7 | 33 | 298 | 15 | 275 | 3.52e-74 | 229 |
| Msa0592820 | AT2G45380.4 | 51.460 | 274 | 112 | 7 | 33 | 298 | 55 | 315 | 1.06e-73 | 229 |
| Msa0592820 | AT2G45380.1 | 51.460 | 274 | 112 | 6 | 33 | 298 | 234 | 494 | 1.40e-71 | 229 |
| Msa0592820 | AT2G45380.2 | 54.255 | 188 | 72 | 4 | 112 | 298 | 12 | 186 | 8.74e-51 | 166 |
| Msa0592820 | AT4G22740.1 | 42.353 | 255 | 92 | 7 | 31 | 233 | 47 | 298 | 2.47e-50 | 170 |
| Msa0592820 | AT4G22740.2 | 42.353 | 255 | 92 | 7 | 31 | 233 | 47 | 298 | 2.47e-50 | 170 |
Find 73 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGAGGGTTTGGAGATTT+TGG | 0.152777 | 4_2:+18319131 | Msa0592820:CDS |
| AACAATGCACCCGTTAATTA+AGG | 0.239691 | 4_2:-18317887 | None:intergenic |
| CCAGACGATGATGATGTTAA+TGG | 0.273519 | 4_2:+18319410 | Msa0592820:CDS |
| GGTTTGGTCACTTTCATCTT+TGG | 0.293434 | 4_2:+18321274 | Msa0592820:CDS |
| CCCGTCAGTCCCCATCCTTC+TGG | 0.315780 | 4_2:-18319796 | None:intergenic |
| TTCCTTTGTATATCATAATC+AGG | 0.321016 | 4_2:-18320856 | None:intergenic |
| GCTTGGAAAGGCACTAATCT+AGG | 0.344675 | 4_2:+18320826 | Msa0592820:CDS |
| GAGAACACAAGCAGGGAAAA+AGG | 0.346279 | 4_2:+18319293 | Msa0592820:CDS |
| AAACCTCAACTCGATTTGAT+TGG | 0.358053 | 4_2:-18321623 | None:intergenic |
| TAACAAAATCCTTAATTAAC+GGG | 0.374288 | 4_2:+18317878 | Msa0592820:five_prime_UTR |
| AACCCTCGAAGGACCGTAAT+CGG | 0.374410 | 4_2:+18319703 | Msa0592820:CDS |
| GTAACATATGGTGGTATAGA+TGG | 0.416298 | 4_2:+18319750 | Msa0592820:CDS |
| AGTCCCCATCCTTCTGGTTC+TGG | 0.416906 | 4_2:-18319790 | None:intergenic |
| GAGCAAGATAGAAGAGAAAG+AGG | 0.419817 | 4_2:+18321296 | Msa0592820:CDS |
| GAAAAGACAAATTCCGATTA+CGG | 0.422754 | 4_2:-18319716 | None:intergenic |
| CAGACTAGCAAAGTAACATA+TGG | 0.425363 | 4_2:+18319738 | Msa0592820:CDS |
| GAAGAACAAAGAAAGTTGTT+AGG | 0.437376 | 4_2:+18321357 | Msa0592820:CDS |
| TATCGTTACAAACCTTATCA+TGG | 0.443589 | 4_2:-18319983 | None:intergenic |
| TTAACAAAATCCTTAATTAA+CGG | 0.444215 | 4_2:+18317877 | Msa0592820:five_prime_UTR |
| AAAGAAGCTGACACGACAAC+AGG | 0.446251 | 4_2:+18319930 | Msa0592820:CDS |
| GGATTCCTCAAGCTGTCAAA+CGG | 0.446584 | 4_2:-18319236 | None:intergenic |
| CCAGAAGGATGGGGACTGAC+GGG | 0.454236 | 4_2:+18319796 | Msa0592820:CDS |
| AATATTGCAGATTCTAGAGT+TGG | 0.476430 | 4_2:+18321233 | Msa0592820:intron |
| GATTCCTCAAGCTGTCAAAC+GGG | 0.487934 | 4_2:-18319235 | None:intergenic |
| CCATTAACATCATCATCGTC+TGG | 0.487955 | 4_2:-18319410 | None:intergenic |
| ATTCCGATTACGGTCCTTCG+AGG | 0.488138 | 4_2:-18319706 | None:intergenic |
| CTTGATTCAGACGGCAAGGT+TGG | 0.488695 | 4_2:+18320653 | Msa0592820:CDS |
| CACTAGAGGAATCCATGATA+AGG | 0.488735 | 4_2:+18319971 | Msa0592820:CDS |
| ACTGAATCAGGTGGCGATTG+AGG | 0.489439 | 4_2:+18319902 | Msa0592820:intron |
| AGATGAGCTTACACACTTTG+AGG | 0.492378 | 4_2:+18320801 | Msa0592820:intron |
| TTACACACTTTGAGGAAGCT+TGG | 0.497309 | 4_2:+18320809 | Msa0592820:CDS |
| TGTATATCATAATCAGGTAC+TGG | 0.499045 | 4_2:-18320850 | None:intergenic |
| TATGATATACAAAGGAAGAA+AGG | 0.501569 | 4_2:+18320862 | Msa0592820:CDS |
| TAATATGAATTTCAAATCGA+GGG | 0.502613 | 4_2:-18321590 | None:intergenic |
| TCTTCATCATCATCTATCTC+AGG | 0.504641 | 4_2:+18317930 | Msa0592820:five_prime_UTR |
| CTCACCCGTTTGACAGCTTG+AGG | 0.506393 | 4_2:+18319231 | Msa0592820:CDS |
| GATCTAGATGAAGTAGAACT+TGG | 0.510217 | 4_2:-18319257 | None:intergenic |
| ACGCTGCACAATCTTAATGA+AGG | 0.518496 | 4_2:+18320686 | Msa0592820:CDS |
| TTAGATAAAGAATATGCAGA+AGG | 0.529750 | 4_2:+18319079 | Msa0592820:exon |
| TAGATAAAGAATATGCAGAA+GGG | 0.534133 | 4_2:+18319080 | Msa0592820:exon |
| ACCAGAAGGATGGGGACTGA+CGG | 0.534899 | 4_2:+18319795 | Msa0592820:CDS |
| TTCCGATTACGGTCCTTCGA+GGG | 0.541657 | 4_2:-18319705 | None:intergenic |
| CTAATATGAATTTCAAATCG+AGG | 0.543324 | 4_2:-18321591 | None:intergenic |
| CTTGGAAAGGCACTAATCTA+GGG | 0.548298 | 4_2:+18320827 | Msa0592820:CDS |
| TCTACCAGAACCAGAAGGAT+GGG | 0.564337 | 4_2:+18319786 | Msa0592820:CDS |
| AATCCAATCAAATCGAGTTG+AGG | 0.566824 | 4_2:+18321620 | Msa0592820:three_prime_UTR |
| TTGAGGAAGCTTGATTCAGA+CGG | 0.567117 | 4_2:+18320644 | Msa0592820:CDS |
| AACGTATTTATGTTTGACAC+AGG | 0.572604 | 4_2:-18317834 | None:intergenic |
| TTCTACCAGAACCAGAAGGA+TGG | 0.573020 | 4_2:+18319785 | Msa0592820:CDS |
| CACTTTGAGGAAGCTTGGAA+AGG | 0.574132 | 4_2:+18320814 | Msa0592820:CDS |
| AGAAGACTGAGAACACAAGC+AGG | 0.574200 | 4_2:+18319285 | Msa0592820:CDS |
| TCGTCTGGATGCTCAACAGA+TGG | 0.576041 | 4_2:-18319395 | None:intergenic |
| AGTATGTAAAATGTAGAATG+AGG | 0.580460 | 4_2:+18321430 | Msa0592820:three_prime_UTR |
| TATGAAAGTCGAAACAAATG+TGG | 0.593107 | 4_2:+18321332 | Msa0592820:CDS |
| CAATATTGAGTGAATTGTGT+AGG | 0.597629 | 4_2:+18321382 | Msa0592820:exon |
| AGAATTAGACTCTGATGATG+AGG | 0.598339 | 4_2:+18319328 | Msa0592820:CDS |
| CTAGCAGAGAGGAAAGGCAG+TGG | 0.608241 | 4_2:+18319645 | Msa0592820:intron |
| CAGAAGGATGGGGACTGACG+GGG | 0.612887 | 4_2:+18319797 | Msa0592820:CDS |
| GAAGCTTGATTCAGACGGCA+AGG | 0.613499 | 4_2:+18320649 | Msa0592820:CDS |
| TGAGTACTAGCAGAGAGGAA+AGG | 0.624923 | 4_2:+18319639 | Msa0592820:intron |
| AGCTGACACGACAACAGGCG+AGG | 0.627903 | 4_2:+18319935 | Msa0592820:CDS |
| GAATGAGGTGTATTGTTGTG+CGG | 0.631430 | 4_2:+18321445 | Msa0592820:three_prime_UTR |
| GAAAGTCGAAACAAATGTGG+AGG | 0.633362 | 4_2:+18321335 | Msa0592820:CDS |
| GACACAGAGAGAACGACACG+TGG | 0.635431 | 4_2:-18317812 | None:intergenic |
| CTACCAGAACCAGAAGGATG+GGG | 0.636130 | 4_2:+18319787 | Msa0592820:CDS |
| TACCTGATTATGATATACAA+AGG | 0.642517 | 4_2:+18320854 | Msa0592820:CDS |
| ACTAGCAAAGTAACATATGG+TGG | 0.655228 | 4_2:+18319741 | Msa0592820:CDS |
| ATACTTCTACCAGAACCAGA+AGG | 0.666727 | 4_2:+18319781 | Msa0592820:CDS |
| GAAGACTGAGAACACAAGCA+GGG | 0.671813 | 4_2:+18319286 | Msa0592820:CDS |
| CAAATCAGAAGAACCCTCGA+AGG | 0.686390 | 4_2:+18319692 | Msa0592820:CDS |
| GCAACACATAGAATCACTAG+AGG | 0.698772 | 4_2:+18319957 | Msa0592820:CDS |
| TGAGTGAATTGTGTAGGACA+TGG | 0.729356 | 4_2:+18321388 | Msa0592820:exon |
| ACACAGAGAGAACGACACGT+GGG | 0.740151 | 4_2:-18317811 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTATTAAAAATTTA+AGG | - | chr4_2:18318882-18318901 | None:intergenic | 0.0% |
| !! | TAAAAAAAACAAAAAAACAG+AGG | - | chr4_2:18317860-18317879 | None:intergenic | 15.0% |
| !! | TTAACAAAATCCTTAATTAA+CGG | + | chr4_2:18317877-18317896 | Msa0592820:five_prime_UTR | 15.0% |
| !! | ATAAATTGATATTTACGTAT+AGG | - | chr4_2:18318079-18318098 | None:intergenic | 15.0% |
| !!! | GATTTTTATATCTAGTATTA+AGG | - | chr4_2:18318132-18318151 | None:intergenic | 15.0% |
| !! | TTAAATAAAGATTGCAATAA+TGG | + | chr4_2:18318226-18318245 | Msa0592820:intron | 15.0% |
| !!! | ACATTTTTTTGACAATTTTA+AGG | - | chr4_2:18318709-18318728 | None:intergenic | 15.0% |
| !!! | ATCTTATCATTATACTATTT+TGG | + | chr4_2:18319481-18319500 | Msa0592820:intron | 15.0% |
| !! | TTGAACTTATTTATTTAGTT+TGG | + | chr4_2:18319590-18319609 | Msa0592820:intron | 15.0% |
| !! | AAAAAATGTCAAATTATGTA+TGG | + | chr4_2:18320095-18320114 | Msa0592820:intron | 15.0% |
| !! | TTAAATGAAGTAAACAATTT+GGG | - | chr4_2:18320981-18321000 | None:intergenic | 15.0% |
| !! | TTTAAATGAAGTAAACAATT+TGG | - | chr4_2:18320982-18321001 | None:intergenic | 15.0% |
| !! | AATTGTTTACTTCATTTAAA+TGG | + | chr4_2:18320982-18321001 | Msa0592820:intron | 15.0% |
| !! | ATTGTTTACTTCATTTAAAT+GGG | + | chr4_2:18320983-18321002 | Msa0592820:intron | 15.0% |
| !! | TAACAAAATCCTTAATTAAC+GGG | + | chr4_2:18317878-18317897 | Msa0592820:five_prime_UTR | 20.0% |
| !! | ATATCAAATATCTTGGATAA+AGG | - | chr4_2:18318001-18318020 | None:intergenic | 20.0% |
| !! | GAATTTGATATCAAATATCT+TGG | - | chr4_2:18318008-18318027 | None:intergenic | 20.0% |
| !!! | AATTCTTATTTTCTTTCACT+TGG | + | chr4_2:18318023-18318042 | Msa0592820:intron | 20.0% |
| !! | ACCTTCATAAAATAAAACTT+TGG | + | chr4_2:18318788-18318807 | Msa0592820:intron | 20.0% |
| !!! | TCCAAAGTTTTATTTTATGA+AGG | - | chr4_2:18318792-18318811 | None:intergenic | 20.0% |
| !! | TTAGTGTTTAAATACTTCAT+AGG | + | chr4_2:18318957-18318976 | Msa0592820:intron | 20.0% |
| !!! | CAATAGAAGTTTTTTTATCA+CGG | + | chr4_2:18319446-18319465 | Msa0592820:intron | 20.0% |
| !!! | TATTTAGTTTGGTTCATATA+TGG | + | chr4_2:18319601-18319620 | Msa0592820:intron | 20.0% |
| !! | GTTAATATTTAAGGAAATGA+AGG | + | chr4_2:18320416-18320435 | Msa0592820:intron | 20.0% |
| !! | TTAGTTAGTTGATTAGAAAA+GGG | + | chr4_2:18320457-18320476 | Msa0592820:intron | 20.0% |
| !!! | GATAACAATGTCTTATTTAT+AGG | - | chr4_2:18320521-18320540 | None:intergenic | 20.0% |
| !! | TTCTCTGTTATTGTATAATA+AGG | + | chr4_2:18320549-18320568 | Msa0592820:intron | 20.0% |
| !! | AACAAAAAAATGATAGGAAT+CGG | - | chr4_2:18320577-18320596 | None:intergenic | 20.0% |
| !!! | TCCTATCATTTTTTTGTTTT+AGG | + | chr4_2:18320579-18320598 | Msa0592820:intron | 20.0% |
| !! | ACCTAAAACAAAAAAATGAT+AGG | - | chr4_2:18320583-18320602 | None:intergenic | 20.0% |
| !!! | TTTTTTTGTTTTAGGTATTG+AGG | + | chr4_2:18320587-18320606 | Msa0592820:intron | 20.0% |
| !! | ATTGTACGATTTCAAAATAA+TGG | + | chr4_2:18320955-18320974 | Msa0592820:intron | 20.0% |
| !! | ATTGTGTTACAAATTAAGTT+AGG | - | chr4_2:18321014-18321033 | None:intergenic | 20.0% |
| !!! | TATACACTATCTTCATTTTT+TGG | + | chr4_2:18321091-18321110 | Msa0592820:intron | 20.0% |
| !!! | ATACACTATCTTCATTTTTT+GGG | + | chr4_2:18321092-18321111 | Msa0592820:intron | 20.0% |
| !!! | CTATTATATGTTTGTTTTCT+TGG | + | chr4_2:18321504-18321523 | Msa0592820:three_prime_UTR | 20.0% |
| !! | TAATATGAATTTCAAATCGA+GGG | - | chr4_2:18321593-18321612 | None:intergenic | 20.0% |
| !! | TGAAGATGAATTTTGAATAC+AGG | + | chr4_2:18318099-18318118 | Msa0592820:intron | 25.0% |
| !! | TTGCAAACATAAAGCTTTTA+AGG | - | chr4_2:18318159-18318178 | None:intergenic | 25.0% |
| ! | AAATAAAACTTTGGATGATG+TGG | + | chr4_2:18318797-18318816 | Msa0592820:intron | 25.0% |
| !!! | TTCTAAGTTTTTTGACATGA+TGG | + | chr4_2:18319013-18319032 | Msa0592820:intron | 25.0% |
| !!! | ATGGTTTGTTGTGTTTTATT+TGG | + | chr4_2:18319032-18319051 | Msa0592820:intron | 25.0% |
| ! | TTAGATAAAGAATATGCAGA+AGG | + | chr4_2:18319079-18319098 | Msa0592820:exon | 25.0% |
| ! | TAGATAAAGAATATGCAGAA+GGG | + | chr4_2:18319080-18319099 | Msa0592820:exon | 25.0% |
| !! | ACAATGTTTTCAAATCAAGA+GGG | + | chr4_2:18319117-18319136 | Msa0592820:CDS | 25.0% |
| ! | CTATATGATATAACTGAATC+AGG | + | chr4_2:18319890-18319909 | Msa0592820:intron | 25.0% |
| ! | TGTTAAGTGTAGATGAAATA+AGG | + | chr4_2:18320046-18320065 | Msa0592820:intron | 25.0% |
| ! | AAAGAAAAACCTTCTACATT+AGG | + | chr4_2:18320072-18320091 | Msa0592820:intron | 25.0% |
| !!! | ACATTTTTTCCTAATGTAGA+AGG | - | chr4_2:18320084-18320103 | None:intergenic | 25.0% |
| ! | AACCAGGTTGTTAATATTTA+AGG | + | chr4_2:18320407-18320426 | Msa0592820:intron | 25.0% |
| ! | TTCCTTAAATATTAACAACC+TGG | - | chr4_2:18320412-18320431 | None:intergenic | 25.0% |
| ! | CTTAGTTAGTTGATTAGAAA+AGG | + | chr4_2:18320456-18320475 | Msa0592820:intron | 25.0% |
| ! | TGATTAGAAAAGGGTTAATT+AGG | + | chr4_2:18320466-18320485 | Msa0592820:intron | 25.0% |
| ! | TTAAGTTTCTATATGTATGC+AGG | + | chr4_2:18320610-18320629 | Msa0592820:intron | 25.0% |
| ! | TAAGTTTCTATATGTATGCA+GGG | + | chr4_2:18320611-18320630 | Msa0592820:intron | 25.0% |
| ! | GTGGTAAAAAGAAATAATGA+TGG | + | chr4_2:18320755-18320774 | Msa0592820:intron | 25.0% |
| ! | TACCTGATTATGATATACAA+AGG | + | chr4_2:18320854-18320873 | Msa0592820:CDS | 25.0% |
| ! | TTCCTTTGTATATCATAATC+AGG | - | chr4_2:18320859-18320878 | None:intergenic | 25.0% |
| ! | TATGATATACAAAGGAAGAA+AGG | + | chr4_2:18320862-18320881 | Msa0592820:CDS | 25.0% |
| ! | ACAATAAGAAACTCAAATTG+AGG | - | chr4_2:18320940-18320959 | None:intergenic | 25.0% |
| ! | GATTCTACATTAAACAAACA+TGG | - | chr4_2:18321157-18321176 | None:intergenic | 25.0% |
| ! | AATGTAGAATCATCATTCTT+CGG | + | chr4_2:18321166-18321185 | Msa0592820:intron | 25.0% |
| ! | AGTATGTAAAATGTAGAATG+AGG | + | chr4_2:18321430-18321449 | Msa0592820:three_prime_UTR | 25.0% |
| ! | CTAATATGAATTTCAAATCG+AGG | - | chr4_2:18321594-18321613 | None:intergenic | 25.0% |
| AACGTATTTATGTTTGACAC+AGG | - | chr4_2:18317837-18317856 | None:intergenic | 30.0% | |
| CATGTATGAAGATGATGAAA+TGG | - | chr4_2:18317965-18317984 | None:intergenic | 30.0% | |
| ! | TGGACTTGAAATTTTGCAAT+TGG | + | chr4_2:18318043-18318062 | Msa0592820:intron | 30.0% |
| ATAGAGATTGCAATATACGA+TGG | + | chr4_2:18318187-18318206 | Msa0592820:intron | 30.0% | |
| ACGCTTTCAATATGAAATGT+TGG | - | chr4_2:18318274-18318293 | None:intergenic | 30.0% | |
| ACAATTAAATGTAACGTGTG+TGG | - | chr4_2:18318321-18318340 | None:intergenic | 30.0% | |
| GTTCAAAAGCTGTCATAAAA+TGG | - | chr4_2:18318435-18318454 | None:intergenic | 30.0% | |
| GAGCAATATATATAAGTGAG+TGG | + | chr4_2:18318550-18318569 | Msa0592820:intron | 30.0% | |
| TAAATACTTCATAGGCTCAT+AGG | + | chr4_2:18318965-18318984 | Msa0592820:intron | 30.0% | |
| TCATAGGCTGAATATCAAAA+GGG | + | chr4_2:18318981-18319000 | Msa0592820:intron | 30.0% | |
| ! | GACAATGTTTTCAAATCAAG+AGG | + | chr4_2:18319116-18319135 | Msa0592820:CDS | 30.0% |
| ! | GTCTTGATGAGAAAATTTTG+AGG | + | chr4_2:18319360-18319379 | Msa0592820:CDS | 30.0% |
| !!! | GAAAATTTTGAGGTCATCAA+TGG | + | chr4_2:18319370-18319389 | Msa0592820:CDS | 30.0% |
| ! | TTTGTTTGACAAGTTCTGAT+TGG | + | chr4_2:18319526-18319545 | Msa0592820:intron | 30.0% |
| GAAAAGACAAATTCCGATTA+CGG | - | chr4_2:18319719-18319738 | None:intergenic | 30.0% | |
| TTGAGACAATTAACACAAAG+AGG | - | chr4_2:18319845-18319864 | None:intergenic | 30.0% | |
| TATGATATAACTGAATCAGG+TGG | + | chr4_2:18319893-18319912 | Msa0592820:intron | 30.0% | |
| TATCGTTACAAACCTTATCA+TGG | - | chr4_2:18319986-18320005 | None:intergenic | 30.0% | |
| GATAAGGTTTGTAACGATAT+AGG | + | chr4_2:18319987-18320006 | Msa0592820:intron | 30.0% | |
| ! | TTTTCATATGCTCTCCAAAA+CGG | + | chr4_2:18320338-18320357 | Msa0592820:intron | 30.0% |
| TCAAATAAGCTAATTCAACC+AGG | + | chr4_2:18320391-18320410 | Msa0592820:intron | 30.0% | |
| TGTATATCATAATCAGGTAC+TGG | - | chr4_2:18320853-18320872 | None:intergenic | 30.0% | |
| CACAAAGGGAACAAAAAAAA+AGG | - | chr4_2:18320892-18320911 | None:intergenic | 30.0% | |
| AGCATCAATATTCACACAAA+GGG | - | chr4_2:18320906-18320925 | None:intergenic | 30.0% | |
| AAGCATCAATATTCACACAA+AGG | - | chr4_2:18320907-18320926 | None:intergenic | 30.0% | |
| TAAGAAACTCAAATTGAGGA+AGG | - | chr4_2:18320936-18320955 | None:intergenic | 30.0% | |
| !! | AATATTGCAGATTCTAGAGT+TGG | + | chr4_2:18321233-18321252 | Msa0592820:intron | 30.0% |
| AGCTAAACAAAAACAAGGTT+TGG | + | chr4_2:18321258-18321277 | Msa0592820:CDS | 30.0% | |
| TATGAAAGTCGAAACAAATG+TGG | + | chr4_2:18321332-18321351 | Msa0592820:CDS | 30.0% | |
| GAAGAACAAAGAAAGTTGTT+AGG | + | chr4_2:18321357-18321376 | Msa0592820:CDS | 30.0% | |
| CAATATTGAGTGAATTGTGT+AGG | + | chr4_2:18321382-18321401 | Msa0592820:exon | 30.0% | |
| AACAATGCACCCGTTAATTA+AGG | - | chr4_2:18317890-18317909 | None:intergenic | 35.0% | |
| TCTTCATCATCATCTATCTC+AGG | + | chr4_2:18317930-18317949 | Msa0592820:five_prime_UTR | 35.0% | |
| ATTGCAATATACGATGGTTG+TGG | + | chr4_2:18318193-18318212 | Msa0592820:intron | 35.0% | |
| TAATGGTTGTGTCCATAGTT+AGG | + | chr4_2:18318243-18318262 | Msa0592820:intron | 35.0% | |
| TAGGGTTGTTATAAGAGAAG+TGG | + | chr4_2:18318398-18318417 | Msa0592820:intron | 35.0% | |
| ! | AGGTAGAAGTATAACATGTG+TGG | + | chr4_2:18318525-18318544 | Msa0592820:intron | 35.0% |
| ! | CCTTAAGGCATTAGGTTTAT+GGG | - | chr4_2:18318581-18318600 | None:intergenic | 35.0% |
| ! | ACCTTAAGGCATTAGGTTTA+TGG | - | chr4_2:18318582-18318601 | None:intergenic | 35.0% |
| ! | AACCTAATGCCTTAAGGTTT+TGG | + | chr4_2:18318584-18318603 | Msa0592820:intron | 35.0% |
| AGATCTTCACCAAAACCTTA+AGG | - | chr4_2:18318596-18318615 | None:intergenic | 35.0% | |
| !! | TTAAGGTTTTGGTGAAGATC+TGG | + | chr4_2:18318595-18318614 | Msa0592820:intron | 35.0% |
| ACTAGATTGGATCATCACTT+CGG | - | chr4_2:18318652-18318671 | None:intergenic | 35.0% | |
| CTCATAGGCTGAATATCAAA+AGG | + | chr4_2:18318980-18318999 | Msa0592820:intron | 35.0% | |
| ! | GTTTTCAAATCAAGAGGGTT+TGG | + | chr4_2:18319122-18319141 | Msa0592820:CDS | 35.0% |
| !!! | TTTGGAGATTTTGGTGGATT+TGG | + | chr4_2:18319140-18319159 | Msa0592820:CDS | 35.0% |
| GTGAAAAAAGGATCGTCAAA+TGG | - | chr4_2:18319212-18319231 | None:intergenic | 35.0% | |
| GATCTAGATGAAGTAGAACT+TGG | - | chr4_2:18319260-18319279 | None:intergenic | 35.0% | |
| ! | AGAATTAGACTCTGATGATG+AGG | + | chr4_2:18319328-18319347 | Msa0592820:CDS | 35.0% |
| ! | TTTTATCACGGTGAATCGAT+CGG | + | chr4_2:18319458-18319477 | Msa0592820:intron | 35.0% |
| CAGACTAGCAAAGTAACATA+TGG | + | chr4_2:18319738-18319757 | Msa0592820:CDS | 35.0% | |
| ACTAGCAAAGTAACATATGG+TGG | + | chr4_2:18319741-18319760 | Msa0592820:CDS | 35.0% | |
| GTAACATATGGTGGTATAGA+TGG | + | chr4_2:18319750-18319769 | Msa0592820:CDS | 35.0% | |
| TATATGTTCAACAGTTGCTC+AGG | + | chr4_2:18320132-18320151 | Msa0592820:intron | 35.0% | |
| TCACTAGTGGTTATGTAAGT+AGG | + | chr4_2:18320363-18320382 | Msa0592820:intron | 35.0% | |
| TTGTTTAACAACATCTCGAG+TGG | + | chr4_2:18320736-18320755 | Msa0592820:intron | 35.0% | |
| !!! | TTTTTGGGTGCAACTTAGAT+TGG | + | chr4_2:18321107-18321126 | Msa0592820:intron | 35.0% |
| TGGTGAGCTAAACAAAAACA+AGG | + | chr4_2:18321253-18321272 | Msa0592820:CDS | 35.0% | |
| ! | AATCCAATCAAATCGAGTTG+AGG | + | chr4_2:18321620-18321639 | Msa0592820:three_prime_UTR | 35.0% |
| ! | AAACCTCAACTCGATTTGAT+TGG | - | chr4_2:18321626-18321645 | None:intergenic | 35.0% |
| ATGTTGGAGCTACCTAACTA+TGG | - | chr4_2:18318258-18318277 | None:intergenic | 40.0% | |
| ! | TATTGAAAGCGTATCGAGTG+TGG | + | chr4_2:18318282-18318301 | Msa0592820:intron | 40.0% |
| CCCATAAACCTAATGCCTTA+AGG | + | chr4_2:18318578-18318597 | Msa0592820:intron | 40.0% | |
| ! | CACCAAAACCTTAAGGCATT+AGG | - | chr4_2:18318589-18318608 | None:intergenic | 40.0% |
| ! | TGGTCTCTAACTTGCATATG+TGG | + | chr4_2:18318615-18318634 | Msa0592820:intron | 40.0% |
| AGTGATGATCCAATCTAGTG+AGG | + | chr4_2:18318653-18318672 | Msa0592820:intron | 40.0% | |
| TTAAGGATTGTGATCCTGCT+GGG | - | chr4_2:18318692-18318711 | None:intergenic | 40.0% | |
| TTTAAGGATTGTGATCCTGC+TGG | - | chr4_2:18318693-18318712 | None:intergenic | 40.0% | |
| CGTCAGTTGCACTTCAAATT+CGG | + | chr4_2:18318741-18318760 | Msa0592820:intron | 40.0% | |
| ! | TCAAGAGGGTTTGGAGATTT+TGG | + | chr4_2:18319131-18319150 | Msa0592820:CDS | 40.0% |
| !! | TAGGCATCGTCATACTTTTG+TGG | - | chr4_2:18319169-18319188 | None:intergenic | 40.0% |
| !! | ATGACGATGCCTAGTCTTTT+TGG | + | chr4_2:18319176-18319195 | Msa0592820:CDS | 40.0% |
| TCTCTTCCTCCAAAAAGACT+AGG | - | chr4_2:18319188-18319207 | None:intergenic | 40.0% | |
| TCAAACGGGTGAGTGAAAAA+AGG | - | chr4_2:18319224-18319243 | None:intergenic | 40.0% | |
| CCATTAACATCATCATCGTC+TGG | - | chr4_2:18319413-18319432 | None:intergenic | 40.0% | |
| ! | CCAGACGATGATGATGTTAA+TGG | + | chr4_2:18319410-18319429 | Msa0592820:CDS | 40.0% |
| ATACTTCTACCAGAACCAGA+AGG | + | chr4_2:18319781-18319800 | Msa0592820:CDS | 40.0% | |
| GCAACACATAGAATCACTAG+AGG | + | chr4_2:18319957-18319976 | Msa0592820:CDS | 40.0% | |
| CACTAGAGGAATCCATGATA+AGG | + | chr4_2:18319971-18319990 | Msa0592820:CDS | 40.0% | |
| TAACACACCAGTCAATCAAC+AGG | - | chr4_2:18320162-18320181 | None:intergenic | 40.0% | |
| ! | CTGGTGTGTTAGCTTCTATT+TGG | + | chr4_2:18320171-18320190 | Msa0592820:intron | 40.0% |
| AAGCTATCGTAGAGAGCTTA+TGG | + | chr4_2:18320300-18320319 | Msa0592820:intron | 40.0% | |
| GGAAATGAAGGATCTGTGAT+CGG | + | chr4_2:18320428-18320447 | Msa0592820:intron | 40.0% | |
| TTGAGGAAGCTTGATTCAGA+CGG | + | chr4_2:18320644-18320663 | Msa0592820:CDS | 40.0% | |
| ACGCTGCACAATCTTAATGA+AGG | + | chr4_2:18320686-18320705 | Msa0592820:CDS | 40.0% | |
| AGATGAGCTTACACACTTTG+AGG | + | chr4_2:18320801-18320820 | Msa0592820:intron | 40.0% | |
| ! | TTACACACTTTGAGGAAGCT+TGG | + | chr4_2:18320809-18320828 | Msa0592820:CDS | 40.0% |
| !! | CTTGGAAAGGCACTAATCTA+GGG | + | chr4_2:18320827-18320846 | Msa0592820:CDS | 40.0% |
| ! | GGTTTGGTCACTTTCATCTT+TGG | + | chr4_2:18321274-18321293 | Msa0592820:CDS | 40.0% |
| GAGCAAGATAGAAGAGAAAG+AGG | + | chr4_2:18321296-18321315 | Msa0592820:CDS | 40.0% | |
| GAAAGTCGAAACAAATGTGG+AGG | + | chr4_2:18321335-18321354 | Msa0592820:CDS | 40.0% | |
| TGAGTGAATTGTGTAGGACA+TGG | + | chr4_2:18321388-18321407 | Msa0592820:exon | 40.0% | |
| GAATGAGGTGTATTGTTGTG+CGG | + | chr4_2:18321445-18321464 | Msa0592820:three_prime_UTR | 40.0% | |
| ! | TCGGGGTGTCTATGTTTCAT+AGG | + | chr4_2:18318379-18318398 | Msa0592820:intron | 45.0% |
| ! | CGGGGTGTCTATGTTTCATA+GGG | + | chr4_2:18318380-18318399 | Msa0592820:intron | 45.0% |
| ! | AGAGGGTTTGGAGATTTTGG+TGG | + | chr4_2:18319134-18319153 | Msa0592820:CDS | 45.0% |
| !! | ACGATGCCTAGTCTTTTTGG+AGG | + | chr4_2:18319179-18319198 | Msa0592820:CDS | 45.0% |
| GATTCCTCAAGCTGTCAAAC+GGG | - | chr4_2:18319238-18319257 | None:intergenic | 45.0% | |
| GGATTCCTCAAGCTGTCAAA+CGG | - | chr4_2:18319239-18319258 | None:intergenic | 45.0% | |
| AGAAGACTGAGAACACAAGC+AGG | + | chr4_2:18319285-18319304 | Msa0592820:CDS | 45.0% | |
| GAAGACTGAGAACACAAGCA+GGG | + | chr4_2:18319286-18319305 | Msa0592820:CDS | 45.0% | |
| GAGAACACAAGCAGGGAAAA+AGG | + | chr4_2:18319293-18319312 | Msa0592820:CDS | 45.0% | |
| TGAGTACTAGCAGAGAGGAA+AGG | + | chr4_2:18319639-18319658 | Msa0592820:intron | 45.0% | |
| CAAATCAGAAGAACCCTCGA+AGG | + | chr4_2:18319692-18319711 | Msa0592820:CDS | 45.0% | |
| TTCTACCAGAACCAGAAGGA+TGG | + | chr4_2:18319785-18319804 | Msa0592820:CDS | 45.0% | |
| TCTACCAGAACCAGAAGGAT+GGG | + | chr4_2:18319786-18319805 | Msa0592820:CDS | 45.0% | |
| TAACACAAAGAGGAAGTCGC+AGG | - | chr4_2:18319835-18319854 | None:intergenic | 45.0% | |
| AAAGAAGCTGACACGACAAC+AGG | + | chr4_2:18319930-18319949 | Msa0592820:CDS | 45.0% | |
| CCACTGCAGAAATGCATTCT+TGG | - | chr4_2:18320014-18320033 | None:intergenic | 45.0% | |
| CCAAGAATGCATTTCTGCAG+TGG | + | chr4_2:18320011-18320030 | Msa0592820:intron | 45.0% | |
| ! | AGGTTCTCCTGTTGATTGAC+TGG | + | chr4_2:18320152-18320171 | Msa0592820:intron | 45.0% |
| ! | AACCACTAGTGAGACCGTTT+TGG | - | chr4_2:18320355-18320374 | None:intergenic | 45.0% |
| ! | TGCAGGGTCATTCAGTTTTG+AGG | + | chr4_2:18320627-18320646 | Msa0592820:intron | 45.0% |
| ! | CACTTTGAGGAAGCTTGGAA+AGG | + | chr4_2:18320814-18320833 | Msa0592820:CDS | 45.0% |
| !! | GCTTGGAAAGGCACTAATCT+AGG | + | chr4_2:18320826-18320845 | Msa0592820:CDS | 45.0% |
| !!! | ATTTTTTTTTTCAAATATTA+AGG | + | chr4_2:18318344-18318363 | Msa0592820:intron | 5.0% |
| !!! | TTTTTTTTTTCAAATATTAA+GGG | + | chr4_2:18318345-18318364 | Msa0592820:intron | 5.0% |
| !!! | TTTTTAATAAAAATATAATG+TGG | + | chr4_2:18318886-18318905 | Msa0592820:intron | 5.0% |
| ACACAGAGAGAACGACACGT+GGG | - | chr4_2:18317814-18317833 | None:intergenic | 50.0% | |
| AAAGCGTATCGAGTGTGGAG+TGG | + | chr4_2:18318287-18318306 | Msa0592820:intron | 50.0% | |
| ATTAAGGGCCCGTGTCATGT+CGG | + | chr4_2:18318360-18318379 | Msa0592820:intron | 50.0% | |
| ATAGACACCCCGACATGACA+CGG | - | chr4_2:18318372-18318391 | None:intergenic | 50.0% | |
| ACGACTGTGTAGCAAGTCTG+AGG | + | chr4_2:18318505-18318524 | Msa0592820:intron | 50.0% | |
| CACAAGCAGGGAAAAAGGAG+TGG | + | chr4_2:18319298-18319317 | Msa0592820:CDS | 50.0% | |
| TCGTCTGGATGCTCAACAGA+TGG | - | chr4_2:18319398-18319417 | None:intergenic | 50.0% | |
| TCGTGTGAGTACTAGCAGAG+AGG | + | chr4_2:18319634-18319653 | Msa0592820:intron | 50.0% | |
| AACCCTCGAAGGACCGTAAT+CGG | + | chr4_2:18319703-18319722 | Msa0592820:CDS | 50.0% | |
| TTCCGATTACGGTCCTTCGA+GGG | - | chr4_2:18319708-18319727 | None:intergenic | 50.0% | |
| ATTCCGATTACGGTCCTTCG+AGG | - | chr4_2:18319709-18319728 | None:intergenic | 50.0% | |
| CTACCAGAACCAGAAGGATG+GGG | + | chr4_2:18319787-18319806 | Msa0592820:CDS | 50.0% | |
| ACTGAATCAGGTGGCGATTG+AGG | + | chr4_2:18319902-18319921 | Msa0592820:intron | 50.0% | |
| CTCCAAAACGGTCTCACTAG+TGG | + | chr4_2:18320350-18320369 | Msa0592820:intron | 50.0% | |
| GAAGCTTGATTCAGACGGCA+AGG | + | chr4_2:18320649-18320668 | Msa0592820:CDS | 50.0% | |
| CTTGATTCAGACGGCAAGGT+TGG | + | chr4_2:18320653-18320672 | Msa0592820:CDS | 50.0% | |
| GACACAGAGAGAACGACACG+TGG | - | chr4_2:18317815-18317834 | None:intergenic | 55.0% | |
| TTAAGGGCCCGTGTCATGTC+GGG | + | chr4_2:18318361-18318380 | Msa0592820:intron | 55.0% | |
| TAGACACCCCGACATGACAC+GGG | - | chr4_2:18318371-18318390 | None:intergenic | 55.0% | |
| CTCACCCGTTTGACAGCTTG+AGG | + | chr4_2:18319231-18319250 | Msa0592820:CDS | 55.0% | |
| CTAGCAGAGAGGAAAGGCAG+TGG | + | chr4_2:18319645-18319664 | Msa0592820:intron | 55.0% | |
| !! | AGTCCCCATCCTTCTGGTTC+TGG | - | chr4_2:18319793-18319812 | None:intergenic | 55.0% |
| ACCAGAAGGATGGGGACTGA+CGG | + | chr4_2:18319795-18319814 | Msa0592820:CDS | 55.0% | |
| TAAGGGCCCGTGTCATGTCG+GGG | + | chr4_2:18318362-18318381 | Msa0592820:intron | 60.0% | |
| GAGGGGGAGCCTCACTAGAT+TGG | - | chr4_2:18318665-18318684 | None:intergenic | 60.0% | |
| TCTAGTGAGGCTCCCCCTCA+TGG | + | chr4_2:18318666-18318685 | Msa0592820:intron | 60.0% | |
| TGATCCTGCTGGGCCATGAG+GGG | - | chr4_2:18318682-18318701 | None:intergenic | 60.0% | |
| GTGATCCTGCTGGGCCATGA+GGG | - | chr4_2:18318683-18318702 | None:intergenic | 60.0% | |
| TGTGATCCTGCTGGGCCATG+AGG | - | chr4_2:18318684-18318703 | None:intergenic | 60.0% | |
| CCAGAAGGATGGGGACTGAC+GGG | + | chr4_2:18319796-18319815 | Msa0592820:CDS | 60.0% | |
| CAGAAGGATGGGGACTGACG+GGG | + | chr4_2:18319797-18319816 | Msa0592820:CDS | 60.0% | |
| AGCTGACACGACAACAGGCG+AGG | + | chr4_2:18319935-18319954 | Msa0592820:CDS | 60.0% | |
| GATCCTGCTGGGCCATGAGG+GGG | - | chr4_2:18318681-18318700 | None:intergenic | 65.0% | |
| CCCGTCAGTCCCCATCCTTC+TGG | - | chr4_2:18319799-18319818 | None:intergenic | 65.0% | |
| GCTCCCCCTCATGGCCCAGC+AGG | + | chr4_2:18318675-18318694 | Msa0592820:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 18317796 | 18321651 | 18317796 | ID=Msa0592820;Name=Msa0592820 |
| chr4_2 | mRNA | 18317796 | 18321651 | 18317796 | ID=Msa0592820-mRNA-1;Parent=Msa0592820;Name=Msa0592820-mRNA-1;_AED=0.21;_eAED=0.21;_QI=170|1|1|1|0.83|0.71|7|257|298 |
| chr4_2 | exon | 18317796 | 18317951 | 18317796 | ID=Msa0592820-mRNA-1:exon:5326;Parent=Msa0592820-mRNA-1 |
| chr4_2 | exon | 18319078 | 18319431 | 18319078 | ID=Msa0592820-mRNA-1:exon:5327;Parent=Msa0592820-mRNA-1 |
| chr4_2 | exon | 18319652 | 18319818 | 18319652 | ID=Msa0592820-mRNA-1:exon:5328;Parent=Msa0592820-mRNA-1 |
| chr4_2 | exon | 18319912 | 18319992 | 18319912 | ID=Msa0592820-mRNA-1:exon:5329;Parent=Msa0592820-mRNA-1 |
| chr4_2 | exon | 18320632 | 18320707 | 18320632 | ID=Msa0592820-mRNA-1:exon:5330;Parent=Msa0592820-mRNA-1 |
| chr4_2 | exon | 18320803 | 18320883 | 18320803 | ID=Msa0592820-mRNA-1:exon:5331;Parent=Msa0592820-mRNA-1 |
| chr4_2 | exon | 18321243 | 18321651 | 18321243 | ID=Msa0592820-mRNA-1:exon:5332;Parent=Msa0592820-mRNA-1 |
| chr4_2 | five_prime_UTR | 18317796 | 18317951 | 18317796 | ID=Msa0592820-mRNA-1:five_prime_utr;Parent=Msa0592820-mRNA-1 |
| chr4_2 | five_prime_UTR | 18319078 | 18319091 | 18319078 | ID=Msa0592820-mRNA-1:five_prime_utr;Parent=Msa0592820-mRNA-1 |
| chr4_2 | CDS | 18319092 | 18319431 | 18319092 | ID=Msa0592820-mRNA-1:cds;Parent=Msa0592820-mRNA-1 |
| chr4_2 | CDS | 18319652 | 18319818 | 18319652 | ID=Msa0592820-mRNA-1:cds;Parent=Msa0592820-mRNA-1 |
| chr4_2 | CDS | 18319912 | 18319992 | 18319912 | ID=Msa0592820-mRNA-1:cds;Parent=Msa0592820-mRNA-1 |
| chr4_2 | CDS | 18320632 | 18320707 | 18320632 | ID=Msa0592820-mRNA-1:cds;Parent=Msa0592820-mRNA-1 |
| chr4_2 | CDS | 18320803 | 18320883 | 18320803 | ID=Msa0592820-mRNA-1:cds;Parent=Msa0592820-mRNA-1 |
| chr4_2 | CDS | 18321243 | 18321394 | 18321243 | ID=Msa0592820-mRNA-1:cds;Parent=Msa0592820-mRNA-1 |
| chr4_2 | three_prime_UTR | 18321395 | 18321651 | 18321395 | ID=Msa0592820-mRNA-1:three_prime_utr;Parent=Msa0592820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
