AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0795250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0795250 MtrunA17_Chr5g0397881 92.877 365 20 2 1 365 1 359 0.0 605
Msa0795250 MtrunA17_Chr6g0472421 45.333 375 122 14 5 353 7 324 4.43e-80 248
Msa0795250 MtrunA17_Chr1g0203601 45.773 343 117 11 6 347 5 279 2.58e-74 232
Msa0795250 MtrunA17_Chr3g0134031 46.087 230 113 4 1 219 1 230 6.16e-60 197
Msa0795250 MtrunA17_Chr5g0402291 50.495 202 83 4 17 215 2 189 1.37e-59 194
Msa0795250 MtrunA17_Chr5g0441531 44.248 226 101 4 14 239 15 215 8.82e-58 188
Msa0795250 MtrunA17_Chr7g0257331 44.724 199 75 3 18 216 16 179 3.37e-48 162
Msa0795250 MtrunA17_Chr5g0410881 72.000 100 26 1 22 121 30 127 7.79e-46 163
Msa0795250 MtrunA17_Chr8g0375041 42.211 199 85 3 17 215 2 170 8.75e-45 154
Msa0795250 MtrunA17_Chr6g0467041 60.952 105 41 0 24 128 22 126 9.00e-43 151
Msa0795250 MtrunA17_Chr7g0260331 65.957 94 32 0 22 115 47 140 3.34e-42 150
Msa0795250 MtrunA17_Chr1g0185131 67.021 94 31 0 22 115 30 123 5.51e-42 149
Msa0795250 MtrunA17_Chr8g0379701 64.356 101 35 1 15 115 4 103 1.74e-41 150
Msa0795250 MtrunA17_Chr4g0039891 63.265 98 36 0 24 121 12 109 1.59e-40 149
Msa0795250 MtrunA17_Chr4g0047421 37.624 202 89 3 21 218 30 198 3.60e-40 141
Msa0795250 MtrunA17_Chr8g0378061 60.577 104 41 0 25 128 23 126 7.01e-40 147
Msa0795250 MtrunA17_Chr3g0135831 62.500 96 36 0 22 117 44 139 3.22e-38 140
Msa0795250 MtrunA17_Chr4g0071051 63.441 93 34 0 22 114 99 191 5.48e-38 140
Msa0795250 MtrunA17_Chr1g0204741 63.830 94 34 0 22 115 38 131 1.33e-37 137
Msa0795250 MtrunA17_Chr6g0485571 59.184 98 40 0 18 115 5 102 4.51e-37 137
Msa0795250 MtrunA17_Chr2g0330821 52.137 117 56 0 12 128 67 183 7.93e-37 136
Msa0795250 MtrunA17_Chr2g0284481 51.240 121 58 1 11 131 3 122 1.36e-36 136
Msa0795250 MtrunA17_Chr8g0392001 59.140 93 37 1 24 115 22 114 2.76e-32 124
Msa0795250 MtrunA17_Chr1g0179321 63.636 66 24 0 18 83 43 108 2.97e-24 95.9
Msa0795250 MtrunA17_Chr4g0023771 54.054 74 32 2 11 83 3 75 3.10e-19 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0795250 AT4G11660.1 49.288 351 135 7 16 355 51 369 2.30e-90 276
Msa0795250 AT5G62020.1 46.302 311 116 8 1 305 1 266 3.16e-81 250
Msa0795250 AT4G36990.1 50.242 207 86 3 12 218 2 191 9.76e-62 199
Msa0795250 AT1G46264.1 46.341 205 105 3 19 219 29 232 9.09e-59 194
Msa0795250 AT2G41690.1 40.930 215 110 2 4 218 20 217 1.38e-48 164
Msa0795250 AT1G32330.1 65.289 121 38 2 1 121 16 132 8.72e-47 166
Msa0795250 AT1G32330.2 65.289 121 38 2 1 121 16 132 9.27e-47 166
Msa0795250 AT4G17750.1 61.667 120 46 0 2 121 30 149 1.81e-46 165
Msa0795250 AT3G02990.1 66.355 107 34 2 9 115 10 114 1.06e-42 155
Msa0795250 AT3G22830.1 67.347 98 32 0 18 115 55 152 6.78e-42 151
Msa0795250 AT4G13980.1 60.000 110 38 1 25 128 24 133 3.07e-40 148
Msa0795250 AT5G16820.1 67.708 96 30 1 20 115 24 118 8.25e-40 147
Msa0795250 AT5G16820.2 67.708 96 30 1 20 115 24 118 8.25e-40 147
Msa0795250 AT5G43840.1 63.830 94 34 0 22 115 17 110 2.54e-39 141
Msa0795250 AT2G26150.1 61.702 94 36 0 22 115 42 135 5.64e-39 142
Msa0795250 AT2G26150.4 61.702 94 36 0 22 115 42 135 5.64e-39 142
Msa0795250 AT3G63350.1 58.763 97 40 0 18 114 22 118 1.56e-38 139
Msa0795250 AT5G03720.2 64.211 95 33 1 21 115 53 146 5.24e-38 141
Msa0795250 AT5G03720.1 64.211 95 33 1 21 115 53 146 5.24e-38 141
Msa0795250 AT5G54070.1 60.638 94 37 0 21 114 68 161 1.12e-37 138
Msa0795250 AT3G51910.1 60.215 93 37 0 22 114 27 119 1.13e-37 137
Msa0795250 AT3G24520.1 65.217 92 32 0 24 115 17 108 1.31e-36 135
Msa0795250 AT4G18880.1 58.824 119 46 2 17 135 9 124 4.41e-35 133
Msa0795250 AT5G45710.3 58.621 116 44 3 20 135 10 121 1.49e-34 130
Msa0795250 AT5G45710.1 58.621 116 44 3 20 135 10 121 1.49e-34 130
Msa0795250 AT1G67970.1 60.215 93 36 1 24 115 19 111 1.14e-33 128
Msa0795250 AT4G18870.1 45.263 95 49 1 20 111 139 233 1.27e-22 96.7
Msa0795250 AT4G18870.1 47.191 89 42 3 25 111 14 99 3.50e-20 90.1
Msa0795250 AT1G77570.1 39.326 89 49 3 25 109 27 114 2.76e-13 67.4

Find 133 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATGTTCCTAAGCTGTTT+GGG 0.204418 5_3:-7187389 Msa0795250:CDS
TCTTCTTCCGACTCCGTTTC+CGG 0.215561 5_3:-7188634 Msa0795250:five_prime_UTR
TGTAACAGAAGGGAAAATTT+TGG 0.225929 5_3:-7187532 Msa0795250:CDS
TAAAGGCCGTGTTTGGAATT+TGG 0.236573 5_3:-7187147 Msa0795250:three_prime_UTR
GTGTTTATTTCTAGGGATTT+CGG 0.268121 5_3:-7188013 Msa0795250:intron
AAGCTGTTTGGGGTTTCAAT+TGG 0.272470 5_3:-7187378 Msa0795250:CDS
CCTCATGTTCCTAAGCTGTT+TGG 0.281935 5_3:-7187390 Msa0795250:CDS
GGTAATGAAACATTCCTTAT+AGG 0.295244 5_3:+7187501 None:intergenic
ATGATGAGTAATTATGCTTC+TGG 0.326687 5_3:-7187609 Msa0795250:CDS
TCCCACAAGCATGTCTAAAA+AGG 0.327270 5_3:+7186792 None:intergenic
ATGGAACAAGCTTCATAGTT+TGG 0.332696 5_3:-7188207 Msa0795250:CDS
CCGTTGATGATTTGGTTTCA+TGG 0.341139 5_3:-7188237 Msa0795250:CDS
AACGTATTCTATCTCTTTCA+AGG 0.350975 5_3:-7188599 Msa0795250:intron
ATTGAGTTGACGAACGAAAC+TGG 0.358502 5_3:+7188126 None:intergenic
ATGGTGTCTCCAGCAACTTC+TGG 0.358649 5_3:-7187819 Msa0795250:CDS
TGATTCTTCCGTTGATGATT+TGG 0.364300 5_3:-7188245 Msa0795250:CDS
AGGAGAGGATAGGAATAAAA+AGG 0.370793 5_3:+7188717 None:intergenic
GAAGTTGATGGCGACATTAC+CGG 0.375837 5_3:-7188353 Msa0795250:exon
AGCTGTTTGGGGTTTCAATT+GGG 0.377393 5_3:-7187377 Msa0795250:CDS
AGCAACTTCTGGTGATGAAC+AGG 0.397317 5_3:-7187808 Msa0795250:CDS
TTATTGTGTTTGAAATACTT+TGG 0.401377 5_3:+7188154 None:intergenic
AATACTATAATTATGTTACT+TGG 0.403069 5_3:+7186651 None:intergenic
CAGACACTAGCTGGTGTCAT+TGG 0.404857 5_3:-7187068 Msa0795250:three_prime_UTR
TGCTGCGACGGCACGGGGCG+TGG 0.405775 5_3:-7187556 Msa0795250:CDS
CTTAATGTGGGTGGAGCTGC+TGG 0.418056 5_3:-7187462 Msa0795250:CDS
TCTAATTTGATACATGTACT+AGG 0.423269 5_3:-7186704 Msa0795250:three_prime_UTR
ATAGTGGTAAAGGCCGTGTT+TGG 0.429939 5_3:-7187154 Msa0795250:exon
CTACCACCGGCGACGGCGTT+AGG 0.435384 5_3:+7188659 None:intergenic
TACGAGTGCTGCGACGGCAC+GGG 0.438079 5_3:-7187562 Msa0795250:CDS
GACGGAGAATGAGGTTGAAC+CGG 0.444512 5_3:-7187340 Msa0795250:CDS
TTTGGAATTTGGATTATGTC+GGG 0.453154 5_3:-7187136 Msa0795250:three_prime_UTR
ATACGTTGAAATATTCTAAC+CGG 0.455917 5_3:+7188615 None:intergenic
CGGATGATCAAGAGCGTCGT+TGG 0.460641 5_3:-7187188 Msa0795250:CDS
GCCATAGCTGTTCCTGCTGC+CGG 0.467534 5_3:+7187897 None:intergenic
GTTTGGAATTTGGATTATGT+CGG 0.467678 5_3:-7187137 Msa0795250:three_prime_UTR
TTGGTTTCATGGAATGAAGA+TGG 0.472004 5_3:-7188226 Msa0795250:CDS
TGTTCATCACCAGAAGTTGC+TGG 0.476217 5_3:+7187810 None:intergenic
GGTGTAATTAGGAACAGATC+TGG 0.477002 5_3:-7188380 Msa0795250:five_prime_UTR
AGAGATTCTAGAAGTTTCGA+AGG 0.477691 5_3:+7188697 None:intergenic
GCACCATTGTTCACCGCAAT+CGG 0.477786 5_3:+7187765 None:intergenic
CGCTAACCTAACGCCGTCGC+CGG 0.479775 5_3:-7188665 Msa0795250:five_prime_UTR
ACATGAGGAGCCTCAACCTC+TGG 0.480477 5_3:+7187405 None:intergenic
TGAAATATTCTAACCGGAAA+CGG 0.485093 5_3:+7188621 None:intergenic
AGATCTGGAAAAGAAGTTGA+TGG 0.487529 5_3:-7188365 Msa0795250:exon
ATGTGAGATGACGAGTTTGA+TGG 0.490539 5_3:-7187430 Msa0795250:CDS
GATTCACCTGTTTGCTCCAC+CGG 0.494684 5_3:+7188334 None:intergenic
ACATTACCGGTGGAGCAAAC+AGG 0.498008 5_3:-7188340 Msa0795250:CDS
TGAACCGGAGAGAGAGGAAC+GGG 0.498202 5_3:-7187325 Msa0795250:CDS
CATGGCTAACAGACACTAGC+TGG 0.498441 5_3:-7187077 Msa0795250:three_prime_UTR
ATGTTACTTGGAAACAAAGT+TGG 0.498921 5_3:+7186663 None:intergenic
GCTGGAGACACCATTCTAAC+CGG 0.500615 5_3:+7187828 None:intergenic
ACTAGGATGCTTCCACCCTA+TGG 0.501720 5_3:-7186687 Msa0795250:three_prime_UTR
GTTGGAAATTGACGAAATAG+TGG 0.503816 5_3:-7187170 Msa0795250:exon
GTCGAATTCATCTCCGATTG+CGG 0.505685 5_3:-7187778 Msa0795250:CDS
ATTGAAACCCCAAACAGCTT+AGG 0.506033 5_3:+7187381 None:intergenic
CAATTGGGCTTAAACGATGT+AGG 0.509913 5_3:-7187362 Msa0795250:CDS
TTAGCAAATTCCCACCGGTC+AGG 0.510367 5_3:+7187981 None:intergenic
TCATTCTCTTCAACTAACTC+CGG 0.512986 5_3:+7187708 None:intergenic
TTCGGAAAGTTGTACCTGAC+CGG 0.514506 5_3:-7187995 Msa0795250:CDS
CTACGAGTGCTGCGACGGCA+CGG 0.515613 5_3:-7187563 Msa0795250:CDS
TTCTAGAAGTTTCGAAGGAG+AGG 0.516926 5_3:+7188702 None:intergenic
ATCTTCTACGAGTGCTGCGA+CGG 0.517274 5_3:-7187568 Msa0795250:CDS
TGTTCCCGTTCCTCTCTCTC+CGG 0.518493 5_3:+7187321 None:intergenic
ATTCTAACCGGAAACGGAGT+CGG 0.518554 5_3:+7188627 None:intergenic
TGGAAACAAAGTTGGTCCAT+AGG 0.519124 5_3:+7186671 None:intergenic
GGAAACAAAGTTGGTCCATA+GGG 0.527244 5_3:+7186672 None:intergenic
CTGTTAGCCATGTTCAAACA+TGG 0.530720 5_3:+7187088 None:intergenic
TATGGCGGCACCGGTTAGAA+TGG 0.532149 5_3:-7187838 Msa0795250:CDS
AATTGACGAAATAGTGGTAA+AGG 0.534223 5_3:-7187164 Msa0795250:exon
AAAAGGAGCGTGTGTGTTGG+TGG 0.534804 5_3:+7188734 None:intergenic
TCATGTTCCTAAGCTGTTTG+GGG 0.536796 5_3:-7187388 Msa0795250:CDS
AACAGTAGCTATGGCGGCAC+CGG 0.542259 5_3:-7187847 Msa0795250:CDS
TGAGGTTGAACCGGAGAGAG+AGG 0.546548 5_3:-7187331 Msa0795250:CDS
CATGAGTTGCACCACTGCGC+CGG 0.546633 5_3:-7187727 Msa0795250:CDS
CGGTGGGAATTTGCTAATGA+CGG 0.547176 5_3:-7187975 Msa0795250:CDS
GGTGGAGCAAACAGGTGAAT+CGG 0.547365 5_3:-7188332 Msa0795250:CDS
GCCGGCAGCAGGAACAGCTA+TGG 0.547975 5_3:-7187898 Msa0795250:CDS
TAATACTGTAACAGTAGCTA+TGG 0.548334 5_3:-7187856 Msa0795250:CDS
TCTTTCTCTAAGCAAAATTG+TGG 0.554230 5_3:+7186887 None:intergenic
ACGATGTAGGACGGAGAATG+AGG 0.556638 5_3:-7187349 Msa0795250:CDS
TTTGATGGAACCAGAGGTTG+AGG 0.559905 5_3:-7187415 Msa0795250:CDS
ACGAGTGCTGCGACGGCACG+GGG 0.561173 5_3:-7187561 Msa0795250:CDS
CTAGCTGGTGTCATTGGACA+AGG 0.568184 5_3:-7187062 Msa0795250:three_prime_UTR
AAATCTCTAGCAAATTCAGC+AGG 0.569125 5_3:+7188181 None:intergenic
ACGCTTGCTTGAGCAAAGCA+TGG 0.569500 5_3:+7186942 None:intergenic
TGGTGATGGTGATGGTGACT+CGG 0.574712 5_3:-7187208 Msa0795250:CDS
TCTCCGATTGCGGTGAACAA+TGG 0.579507 5_3:-7187768 Msa0795250:CDS
CGGGGCGTGGTTGTAACAGA+AGG 0.579523 5_3:-7187543 Msa0795250:CDS
GAAGTTTCGAAGGAGAGGAT+AGG 0.579811 5_3:+7188707 None:intergenic
AACAGGTGAATCGGCGACGG+CGG 0.583900 5_3:-7188323 Msa0795250:CDS
AATGAGCTAAGTCAATTGAA+AGG 0.584859 5_3:-7187654 Msa0795250:CDS
CCTCGTGATGGTGATGGTGA+TGG 0.588325 5_3:-7187216 Msa0795250:CDS
ATCAAACTCGTCATCTCACA+TGG 0.596646 5_3:+7187432 None:intergenic
GAAGAAACTACCACCGGCGA+CGG 0.600474 5_3:+7188652 None:intergenic
AAAGGAGCGTGTGTGTTGGT+GGG 0.603469 5_3:+7188735 None:intergenic
AACAAAGTTGGTCCATAGGG+TGG 0.604166 5_3:+7186675 None:intergenic
GCAAACAGGTGAATCGGCGA+CGG 0.608757 5_3:-7188326 Msa0795250:CDS
AACTTCTGGTGATGAACAGG+TGG 0.612326 5_3:-7187805 Msa0795250:CDS
AGTTAGTTGAAGAGAATGAA+AGG 0.612844 5_3:-7187704 Msa0795250:CDS
CCATGAAACCAAATCATCAA+CGG 0.613347 5_3:+7188237 None:intergenic
AAGGAATGTTTCATTACCTG+AGG 0.613712 5_3:-7187496 Msa0795250:CDS
GGAAAGTTGTACCTGACCGG+TGG 0.614886 5_3:-7187992 Msa0795250:CDS
TCTGAACCTCGTGATGGTGA+TGG 0.617342 5_3:-7187222 Msa0795250:CDS
ATTTGCTTCGAGATATTCAG+CGG 0.621869 5_3:-7187932 Msa0795250:CDS
TTCAACTAACTCCGGCGCAG+TGG 0.622278 5_3:+7187716 None:intergenic
GATGCAAACACAATCCTCGC+AGG 0.623759 5_3:-7187271 Msa0795250:CDS
GCAGGAGACTGATCGAGGAT+CGG 0.626303 5_3:-7187253 Msa0795250:CDS
GACGAGTTTGATGGAACCAG+AGG 0.628378 5_3:-7187421 Msa0795250:CDS
TCCTCGCAGGAGACTGATCG+AGG 0.628520 5_3:-7187258 Msa0795250:CDS
GAAAGTTGTACCTGACCGGT+GGG 0.631205 5_3:-7187991 Msa0795250:CDS
TACTGTAACAGTAGCTATGG+CGG 0.634074 5_3:-7187853 Msa0795250:CDS
AATGTGGGTGGAGCTGCTGG+CGG 0.634893 5_3:-7187459 Msa0795250:CDS
GGAAAATGTAGTGCTTAATG+TGG 0.635559 5_3:-7187475 Msa0795250:CDS
TTGAACCGGAGAGAGAGGAA+CGG 0.637385 5_3:-7187326 Msa0795250:CDS
AATGTAGTGCTTAATGTGGG+TGG 0.639772 5_3:-7187471 Msa0795250:CDS
ATGACACCCATGTTTGAACA+TGG 0.639922 5_3:-7187095 Msa0795250:three_prime_UTR
CCAAACAGCTTAGGAACATG+AGG 0.642433 5_3:+7187390 None:intergenic
GAAAATGTAGTGCTTAATGT+GGG 0.644997 5_3:-7187474 Msa0795250:CDS
CGTCATTAGCAAATTCCCAC+CGG 0.646656 5_3:+7187976 None:intergenic
CATAATCCAAATTCCAAACA+CGG 0.652013 5_3:+7187141 None:intergenic
TAACCTAACGCCGTCGCCGG+TGG 0.652771 5_3:-7188662 Msa0795250:five_prime_UTR
TGGGCTTAAACGATGTAGGA+CGG 0.657843 5_3:-7187358 Msa0795250:CDS
TCCTCGATCAGTCTCCTGCG+AGG 0.667916 5_3:+7187257 None:intergenic
AGGAACAGCTATGGCGACAG+CGG 0.668564 5_3:-7187889 Msa0795250:CDS
GGGGCGTGGTTGTAACAGAA+GGG 0.668865 5_3:-7187542 Msa0795250:CDS
AAGGAGCGTGTGTGTTGGTG+GGG 0.675490 5_3:+7188736 None:intergenic
GTTGATGGCGACATTACCGG+TGG 0.679162 5_3:-7188350 Msa0795250:exon
GCTAATGACGGATTTCGACG+AGG 0.685443 5_3:-7187963 Msa0795250:CDS
TCGGAAGAAGAAACTACCAC+CGG 0.692996 5_3:+7188646 None:intergenic
TGTTAGCCATGTTCAAACAT+GGG 0.695320 5_3:+7187089 None:intergenic
GTGAAATCTGAACCTCGTGA+TGG 0.700758 5_3:-7187228 Msa0795250:CDS
CCATCACCATCACCATCACG+AGG 0.701913 5_3:+7187216 None:intergenic
TAGCTGGTGTCATTGGACAA+GGG 0.714141 5_3:-7187061 Msa0795250:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATTATGATGTTAAATA+TGG + chr5_3:7186927-7186946 None:intergenic 10.0%
!! AATTATTATGATGTTAAATA+TGG + chr5_3:7186927-7186946 None:intergenic 10.0%
!! ATAGATTATTAGATTAGAAT+AGG - chr5_3:7186897-7186916 Msa0795250:three_prime_UTR 15.0%
!!! CATAATAATTTTGTTTGATT+AGG - chr5_3:7186937-7186956 Msa0795250:three_prime_UTR 15.0%
!! AAAAAAGAAAGTAAAACAAA+AGG + chr5_3:7187311-7187330 None:intergenic 15.0%
!!! TTTGTTTTACTTTCTTTTTT+AGG - chr5_3:7187311-7187330 Msa0795250:CDS 15.0%
!!! TAAATTTTGTGTTTATTTCT+AGG - chr5_3:7187349-7187368 Msa0795250:CDS 15.0%
!!! AAATTTTGTGTTTATTTCTA+GGG - chr5_3:7187350-7187369 Msa0795250:CDS 15.0%
!! AATACTATAATTATGTTACT+TGG + chr5_3:7188722-7188741 None:intergenic 15.0%
!! ATAGATTATTAGATTAGAAT+AGG - chr5_3:7186897-7186916 Msa0795250:three_prime_UTR 15.0%
!!! CATAATAATTTTGTTTGATT+AGG - chr5_3:7186937-7186956 Msa0795250:three_prime_UTR 15.0%
!! AAAAAAGAAAGTAAAACAAA+AGG + chr5_3:7187311-7187330 None:intergenic 15.0%
!!! TTTGTTTTACTTTCTTTTTT+AGG - chr5_3:7187311-7187330 Msa0795250:CDS 15.0%
!!! TAAATTTTGTGTTTATTTCT+AGG - chr5_3:7187349-7187368 Msa0795250:CDS 15.0%
!!! AAATTTTGTGTTTATTTCTA+GGG - chr5_3:7187350-7187369 Msa0795250:CDS 15.0%
!! AATACTATAATTATGTTACT+TGG + chr5_3:7188722-7188741 None:intergenic 15.0%
!! ACAAAGTATGATATTAACTA+AGG + chr5_3:7186838-7186857 None:intergenic 20.0%
!! ATGAACTAGATACAAAAATT+AGG - chr5_3:7186968-7186987 Msa0795250:three_prime_UTR 20.0%
!! TGAACTAGATACAAAAATTA+GGG - chr5_3:7186969-7186988 Msa0795250:three_prime_UTR 20.0%
!!! TTATTGTGTTTGAAATACTT+TGG + chr5_3:7187219-7187238 None:intergenic 20.0%
!! ACAAAGTATGATATTAACTA+AGG + chr5_3:7186838-7186857 None:intergenic 20.0%
!! ATGAACTAGATACAAAAATT+AGG - chr5_3:7186968-7186987 Msa0795250:three_prime_UTR 20.0%
!! TGAACTAGATACAAAAATTA+GGG - chr5_3:7186969-7186988 Msa0795250:three_prime_UTR 20.0%
!!! TTATTGTGTTTGAAATACTT+TGG + chr5_3:7187219-7187238 None:intergenic 20.0%
! ATACGTTGAAATATTCTAAC+CGG + chr5_3:7186758-7186777 None:intergenic 25.0%
! TATACTAAGCATGCATAATA+CGG + chr5_3:7186874-7186893 None:intergenic 25.0%
! ACAAAAATTAGGGTGTAATT+AGG - chr5_3:7186979-7186998 Msa0795250:three_prime_UTR 25.0%
! TCTAATTTGATACATGTACT+AGG - chr5_3:7188666-7188685 Msa0795250:five_prime_UTR 25.0%
! ATACGTTGAAATATTCTAAC+CGG + chr5_3:7186758-7186777 None:intergenic 25.0%
! TATACTAAGCATGCATAATA+CGG + chr5_3:7186874-7186893 None:intergenic 25.0%
! ACAAAAATTAGGGTGTAATT+AGG - chr5_3:7186979-7186998 Msa0795250:three_prime_UTR 25.0%
! TCTAATTTGATACATGTACT+AGG - chr5_3:7188666-7188685 Msa0795250:five_prime_UTR 25.0%
TGAAATATTCTAACCGGAAA+CGG + chr5_3:7186752-7186771 None:intergenic 30.0%
AACGTATTCTATCTCTTTCA+AGG - chr5_3:7186771-7186790 Msa0795250:three_prime_UTR 30.0%
!! GTGTTTATTTCTAGGGATTT+CGG - chr5_3:7187357-7187376 Msa0795250:CDS 30.0%
TAATACTGTAACAGTAGCTA+TGG - chr5_3:7187514-7187533 Msa0795250:CDS 30.0%
AGTTAGTTGAAGAGAATGAA+AGG - chr5_3:7187666-7187685 Msa0795250:CDS 30.0%
AATGAGCTAAGTCAATTGAA+AGG - chr5_3:7187716-7187735 Msa0795250:CDS 30.0%
ATGATGAGTAATTATGCTTC+TGG - chr5_3:7187761-7187780 Msa0795250:CDS 30.0%
! TGTAACAGAAGGGAAAATTT+TGG - chr5_3:7187838-7187857 Msa0795250:CDS 30.0%
! TTTTGGATCTTTTGCCTATA+AGG - chr5_3:7187855-7187874 Msa0795250:CDS 30.0%
GGTAATGAAACATTCCTTAT+AGG + chr5_3:7187872-7187891 None:intergenic 30.0%
GAAAATGTAGTGCTTAATGT+GGG - chr5_3:7187896-7187915 Msa0795250:CDS 30.0%
AATTGACGAAATAGTGGTAA+AGG - chr5_3:7188206-7188225 Msa0795250:CDS 30.0%
CATAATCCAAATTCCAAACA+CGG + chr5_3:7188232-7188251 None:intergenic 30.0%
! GTTTGGAATTTGGATTATGT+CGG - chr5_3:7188233-7188252 Msa0795250:CDS 30.0%
! TTTGGAATTTGGATTATGTC+GGG - chr5_3:7188234-7188253 Msa0795250:CDS 30.0%
!! GGTGTCATGTTTCAAATTTT+AGG + chr5_3:7188263-7188282 None:intergenic 30.0%
TCTTTCTCTAAGCAAAATTG+TGG + chr5_3:7188486-7188505 None:intergenic 30.0%
! ATGTTACTTGGAAACAAAGT+TGG + chr5_3:7188710-7188729 None:intergenic 30.0%
TGAAATATTCTAACCGGAAA+CGG + chr5_3:7186752-7186771 None:intergenic 30.0%
AACGTATTCTATCTCTTTCA+AGG - chr5_3:7186771-7186790 Msa0795250:three_prime_UTR 30.0%
!! GTGTTTATTTCTAGGGATTT+CGG - chr5_3:7187357-7187376 Msa0795250:CDS 30.0%
TAATACTGTAACAGTAGCTA+TGG - chr5_3:7187514-7187533 Msa0795250:CDS 30.0%
AGTTAGTTGAAGAGAATGAA+AGG - chr5_3:7187666-7187685 Msa0795250:CDS 30.0%
AATGAGCTAAGTCAATTGAA+AGG - chr5_3:7187716-7187735 Msa0795250:CDS 30.0%
ATGATGAGTAATTATGCTTC+TGG - chr5_3:7187761-7187780 Msa0795250:CDS 30.0%
! TGTAACAGAAGGGAAAATTT+TGG - chr5_3:7187838-7187857 Msa0795250:CDS 30.0%
! TTTTGGATCTTTTGCCTATA+AGG - chr5_3:7187855-7187874 Msa0795250:CDS 30.0%
GGTAATGAAACATTCCTTAT+AGG + chr5_3:7187872-7187891 None:intergenic 30.0%
GAAAATGTAGTGCTTAATGT+GGG - chr5_3:7187896-7187915 Msa0795250:CDS 30.0%
AATTGACGAAATAGTGGTAA+AGG - chr5_3:7188206-7188225 Msa0795250:CDS 30.0%
CATAATCCAAATTCCAAACA+CGG + chr5_3:7188232-7188251 None:intergenic 30.0%
! GTTTGGAATTTGGATTATGT+CGG - chr5_3:7188233-7188252 Msa0795250:CDS 30.0%
! TTTGGAATTTGGATTATGTC+GGG - chr5_3:7188234-7188253 Msa0795250:CDS 30.0%
!! GGTGTCATGTTTCAAATTTT+AGG + chr5_3:7188263-7188282 None:intergenic 30.0%
TCTTTCTCTAAGCAAAATTG+TGG + chr5_3:7188486-7188505 None:intergenic 30.0%
! ATGTTACTTGGAAACAAAGT+TGG + chr5_3:7188710-7188729 None:intergenic 30.0%
AGGAGAGGATAGGAATAAAA+AGG + chr5_3:7186656-7186675 None:intergenic 35.0%
! AGAGATTCTAGAAGTTTCGA+AGG + chr5_3:7186676-7186695 None:intergenic 35.0%
AGATCTGGAAAAGAAGTTGA+TGG - chr5_3:7187005-7187024 Msa0795250:three_prime_UTR 35.0%
! TGATACGTTTTCGTCAGAAA+CGG + chr5_3:7187096-7187115 None:intergenic 35.0%
!! TGATTCTTCCGTTGATGATT+TGG - chr5_3:7187125-7187144 Msa0795250:three_prime_UTR 35.0%
CCATGAAACCAAATCATCAA+CGG + chr5_3:7187136-7187155 None:intergenic 35.0%
TTGGTTTCATGGAATGAAGA+TGG - chr5_3:7187144-7187163 Msa0795250:three_prime_UTR 35.0%
ATGGAACAAGCTTCATAGTT+TGG - chr5_3:7187163-7187182 Msa0795250:exon 35.0%
AAATCTCTAGCAAATTCAGC+AGG + chr5_3:7187192-7187211 None:intergenic 35.0%
ATTTGCTTCGAGATATTCAG+CGG - chr5_3:7187438-7187457 Msa0795250:CDS 35.0%
TCATTCTCTTCAACTAACTC+CGG + chr5_3:7187665-7187684 None:intergenic 35.0%
AAGGAATGTTTCATTACCTG+AGG - chr5_3:7187874-7187893 Msa0795250:CDS 35.0%
! TTAAGCACTACATTTTCCTC+AGG + chr5_3:7187893-7187912 None:intergenic 35.0%
GGAAAATGTAGTGCTTAATG+TGG - chr5_3:7187895-7187914 Msa0795250:CDS 35.0%
GTTGGAAATTGACGAAATAG+TGG - chr5_3:7188200-7188219 Msa0795250:CDS 35.0%
TGTTAGCCATGTTCAAACAT+GGG + chr5_3:7188284-7188303 None:intergenic 35.0%
! TCCTTTTTAGACATGCTTGT+GGG - chr5_3:7188577-7188596 Msa0795250:intron 35.0%
AGGAGAGGATAGGAATAAAA+AGG + chr5_3:7186656-7186675 None:intergenic 35.0%
! AGAGATTCTAGAAGTTTCGA+AGG + chr5_3:7186676-7186695 None:intergenic 35.0%
AGATCTGGAAAAGAAGTTGA+TGG - chr5_3:7187005-7187024 Msa0795250:three_prime_UTR 35.0%
! TGATACGTTTTCGTCAGAAA+CGG + chr5_3:7187096-7187115 None:intergenic 35.0%
!! TGATTCTTCCGTTGATGATT+TGG - chr5_3:7187125-7187144 Msa0795250:three_prime_UTR 35.0%
CCATGAAACCAAATCATCAA+CGG + chr5_3:7187136-7187155 None:intergenic 35.0%
TTGGTTTCATGGAATGAAGA+TGG - chr5_3:7187144-7187163 Msa0795250:three_prime_UTR 35.0%
ATGGAACAAGCTTCATAGTT+TGG - chr5_3:7187163-7187182 Msa0795250:exon 35.0%
AAATCTCTAGCAAATTCAGC+AGG + chr5_3:7187192-7187211 None:intergenic 35.0%
ATTTGCTTCGAGATATTCAG+CGG - chr5_3:7187438-7187457 Msa0795250:CDS 35.0%
TCATTCTCTTCAACTAACTC+CGG + chr5_3:7187665-7187684 None:intergenic 35.0%
AAGGAATGTTTCATTACCTG+AGG - chr5_3:7187874-7187893 Msa0795250:CDS 35.0%
! TTAAGCACTACATTTTCCTC+AGG + chr5_3:7187893-7187912 None:intergenic 35.0%
GGAAAATGTAGTGCTTAATG+TGG - chr5_3:7187895-7187914 Msa0795250:CDS 35.0%
GTTGGAAATTGACGAAATAG+TGG - chr5_3:7188200-7188219 Msa0795250:CDS 35.0%
TGTTAGCCATGTTCAAACAT+GGG + chr5_3:7188284-7188303 None:intergenic 35.0%
! TCCTTTTTAGACATGCTTGT+GGG - chr5_3:7188577-7188596 Msa0795250:intron 35.0%
! ATAAAAAGGAGCGTGTGTGT+TGG + chr5_3:7186642-7186661 None:intergenic 40.0%
! TTCTAGAAGTTTCGAAGGAG+AGG + chr5_3:7186671-7186690 None:intergenic 40.0%
GGTGTAATTAGGAACAGATC+TGG - chr5_3:7186990-7187009 Msa0795250:three_prime_UTR 40.0%
!! CCGTTGATGATTTGGTTTCA+TGG - chr5_3:7187133-7187152 Msa0795250:three_prime_UTR 40.0%
!! ATTGAGTTGACGAACGAAAC+TGG + chr5_3:7187247-7187266 None:intergenic 40.0%
TCAGCGGAGAAAAATATTGC+CGG - chr5_3:7187454-7187473 Msa0795250:CDS 40.0%
TACTGTAACAGTAGCTATGG+CGG - chr5_3:7187517-7187536 Msa0795250:CDS 40.0%
AATGTAGTGCTTAATGTGGG+TGG - chr5_3:7187899-7187918 Msa0795250:CDS 40.0%
ATCAAACTCGTCATCTCACA+TGG + chr5_3:7187941-7187960 None:intergenic 40.0%
ATGTGAGATGACGAGTTTGA+TGG - chr5_3:7187940-7187959 Msa0795250:CDS 40.0%
CTCATGTTCCTAAGCTGTTT+GGG - chr5_3:7187981-7188000 Msa0795250:CDS 40.0%
TCATGTTCCTAAGCTGTTTG+GGG - chr5_3:7187982-7188001 Msa0795250:CDS 40.0%
ATTGAAACCCCAAACAGCTT+AGG + chr5_3:7187992-7188011 None:intergenic 40.0%
! AAGCTGTTTGGGGTTTCAAT+TGG - chr5_3:7187992-7188011 Msa0795250:CDS 40.0%
! AGCTGTTTGGGGTTTCAATT+GGG - chr5_3:7187993-7188012 Msa0795250:CDS 40.0%
CAATTGGGCTTAAACGATGT+AGG - chr5_3:7188008-7188027 Msa0795250:intron 40.0%
! TAAAGGCCGTGTTTGGAATT+TGG - chr5_3:7188223-7188242 Msa0795250:CDS 40.0%
ATGACACCCATGTTTGAACA+TGG - chr5_3:7188275-7188294 Msa0795250:CDS 40.0%
CTGTTAGCCATGTTCAAACA+TGG + chr5_3:7188285-7188304 None:intergenic 40.0%
! GTCCTTTTTAGACATGCTTG+TGG - chr5_3:7188576-7188595 Msa0795250:intron 40.0%
TCCCACAAGCATGTCTAAAA+AGG + chr5_3:7188581-7188600 None:intergenic 40.0%
! GGAAACAAAGTTGGTCCATA+GGG + chr5_3:7188701-7188720 None:intergenic 40.0%
! TGGAAACAAAGTTGGTCCAT+AGG + chr5_3:7188702-7188721 None:intergenic 40.0%
! ATAAAAAGGAGCGTGTGTGT+TGG + chr5_3:7186642-7186661 None:intergenic 40.0%
! TTCTAGAAGTTTCGAAGGAG+AGG + chr5_3:7186671-7186690 None:intergenic 40.0%
GGTGTAATTAGGAACAGATC+TGG - chr5_3:7186990-7187009 Msa0795250:three_prime_UTR 40.0%
!! CCGTTGATGATTTGGTTTCA+TGG - chr5_3:7187133-7187152 Msa0795250:three_prime_UTR 40.0%
!! ATTGAGTTGACGAACGAAAC+TGG + chr5_3:7187247-7187266 None:intergenic 40.0%
TCAGCGGAGAAAAATATTGC+CGG - chr5_3:7187454-7187473 Msa0795250:CDS 40.0%
TACTGTAACAGTAGCTATGG+CGG - chr5_3:7187517-7187536 Msa0795250:CDS 40.0%
AATGTAGTGCTTAATGTGGG+TGG - chr5_3:7187899-7187918 Msa0795250:CDS 40.0%
ATCAAACTCGTCATCTCACA+TGG + chr5_3:7187941-7187960 None:intergenic 40.0%
ATGTGAGATGACGAGTTTGA+TGG - chr5_3:7187940-7187959 Msa0795250:CDS 40.0%
CTCATGTTCCTAAGCTGTTT+GGG - chr5_3:7187981-7188000 Msa0795250:CDS 40.0%
TCATGTTCCTAAGCTGTTTG+GGG - chr5_3:7187982-7188001 Msa0795250:CDS 40.0%
ATTGAAACCCCAAACAGCTT+AGG + chr5_3:7187992-7188011 None:intergenic 40.0%
! AAGCTGTTTGGGGTTTCAAT+TGG - chr5_3:7187992-7188011 Msa0795250:CDS 40.0%
! AGCTGTTTGGGGTTTCAATT+GGG - chr5_3:7187993-7188012 Msa0795250:CDS 40.0%
CAATTGGGCTTAAACGATGT+AGG - chr5_3:7188008-7188027 Msa0795250:intron 40.0%
! TAAAGGCCGTGTTTGGAATT+TGG - chr5_3:7188223-7188242 Msa0795250:CDS 40.0%
ATGACACCCATGTTTGAACA+TGG - chr5_3:7188275-7188294 Msa0795250:CDS 40.0%
CTGTTAGCCATGTTCAAACA+TGG + chr5_3:7188285-7188304 None:intergenic 40.0%
! GTCCTTTTTAGACATGCTTG+TGG - chr5_3:7188576-7188595 Msa0795250:intron 40.0%
TCCCACAAGCATGTCTAAAA+AGG + chr5_3:7188581-7188600 None:intergenic 40.0%
! GGAAACAAAGTTGGTCCATA+GGG + chr5_3:7188701-7188720 None:intergenic 40.0%
! TGGAAACAAAGTTGGTCCAT+AGG + chr5_3:7188702-7188721 None:intergenic 40.0%
GAAGTTTCGAAGGAGAGGAT+AGG + chr5_3:7186666-7186685 None:intergenic 45.0%
TCGGAAGAAGAAACTACCAC+CGG + chr5_3:7186727-7186746 None:intergenic 45.0%
ATTCTAACCGGAAACGGAGT+CGG + chr5_3:7186746-7186765 None:intergenic 45.0%
!! GAAGTTGATGGCGACATTAC+CGG - chr5_3:7187017-7187036 Msa0795250:three_prime_UTR 45.0%
TTCGGAAAGTTGTACCTGAC+CGG - chr5_3:7187375-7187394 Msa0795250:CDS 45.0%
CGTCATTAGCAAATTCCCAC+CGG + chr5_3:7187397-7187416 None:intergenic 45.0%
!! CGGTGGGAATTTGCTAATGA+CGG - chr5_3:7187395-7187414 Msa0795250:CDS 45.0%
AGAAAAATATTGCCGGCAGC+AGG - chr5_3:7187461-7187480 Msa0795250:CDS 45.0%
TGTTCATCACCAGAAGTTGC+TGG + chr5_3:7187563-7187582 None:intergenic 45.0%
! AGCAACTTCTGGTGATGAAC+AGG - chr5_3:7187562-7187581 Msa0795250:CDS 45.0%
! AACTTCTGGTGATGAACAGG+TGG - chr5_3:7187565-7187584 Msa0795250:CDS 45.0%
GTCGAATTCATCTCCGATTG+CGG - chr5_3:7187592-7187611 Msa0795250:CDS 45.0%
TTTGATGGAACCAGAGGTTG+AGG - chr5_3:7187955-7187974 Msa0795250:CDS 45.0%
CCAAACAGCTTAGGAACATG+AGG + chr5_3:7187983-7188002 None:intergenic 45.0%
CCTCATGTTCCTAAGCTGTT+TGG - chr5_3:7187980-7187999 Msa0795250:CDS 45.0%
TGGGCTTAAACGATGTAGGA+CGG - chr5_3:7188012-7188031 Msa0795250:intron 45.0%
GTGAAATCTGAACCTCGTGA+TGG - chr5_3:7188142-7188161 Msa0795250:CDS 45.0%
ATAGTGGTAAAGGCCGTGTT+TGG - chr5_3:7188216-7188235 Msa0795250:CDS 45.0%
!! TAGCTGGTGTCATTGGACAA+GGG - chr5_3:7188309-7188328 Msa0795250:CDS 45.0%
! AACAAAGTTGGTCCATAGGG+TGG + chr5_3:7188698-7188717 None:intergenic 45.0%
GAAGTTTCGAAGGAGAGGAT+AGG + chr5_3:7186666-7186685 None:intergenic 45.0%
TCGGAAGAAGAAACTACCAC+CGG + chr5_3:7186727-7186746 None:intergenic 45.0%
ATTCTAACCGGAAACGGAGT+CGG + chr5_3:7186746-7186765 None:intergenic 45.0%
!! GAAGTTGATGGCGACATTAC+CGG - chr5_3:7187017-7187036 Msa0795250:three_prime_UTR 45.0%
TTCGGAAAGTTGTACCTGAC+CGG - chr5_3:7187375-7187394 Msa0795250:CDS 45.0%
CGTCATTAGCAAATTCCCAC+CGG + chr5_3:7187397-7187416 None:intergenic 45.0%
!! CGGTGGGAATTTGCTAATGA+CGG - chr5_3:7187395-7187414 Msa0795250:CDS 45.0%
AGAAAAATATTGCCGGCAGC+AGG - chr5_3:7187461-7187480 Msa0795250:CDS 45.0%
TGTTCATCACCAGAAGTTGC+TGG + chr5_3:7187563-7187582 None:intergenic 45.0%
! AGCAACTTCTGGTGATGAAC+AGG - chr5_3:7187562-7187581 Msa0795250:CDS 45.0%
! AACTTCTGGTGATGAACAGG+TGG - chr5_3:7187565-7187584 Msa0795250:CDS 45.0%
GTCGAATTCATCTCCGATTG+CGG - chr5_3:7187592-7187611 Msa0795250:CDS 45.0%
TTTGATGGAACCAGAGGTTG+AGG - chr5_3:7187955-7187974 Msa0795250:CDS 45.0%
CCAAACAGCTTAGGAACATG+AGG + chr5_3:7187983-7188002 None:intergenic 45.0%
CCTCATGTTCCTAAGCTGTT+TGG - chr5_3:7187980-7187999 Msa0795250:CDS 45.0%
TGGGCTTAAACGATGTAGGA+CGG - chr5_3:7188012-7188031 Msa0795250:intron 45.0%
GTGAAATCTGAACCTCGTGA+TGG - chr5_3:7188142-7188161 Msa0795250:CDS 45.0%
ATAGTGGTAAAGGCCGTGTT+TGG - chr5_3:7188216-7188235 Msa0795250:CDS 45.0%
!! TAGCTGGTGTCATTGGACAA+GGG - chr5_3:7188309-7188328 Msa0795250:CDS 45.0%
! AACAAAGTTGGTCCATAGGG+TGG + chr5_3:7188698-7188717 None:intergenic 45.0%
!! AAAATTAATTAATTGATTAT+AGG + chr5_3:7186815-7186834 None:intergenic 5.0%
!! AAAATTAATTAATTGATTAT+AGG + chr5_3:7186815-7186834 None:intergenic 5.0%
! AAAGGAGCGTGTGTGTTGGT+GGG + chr5_3:7186638-7186657 None:intergenic 50.0%
! AAAAGGAGCGTGTGTGTTGG+TGG + chr5_3:7186639-7186658 None:intergenic 50.0%
TCTTCTTCCGACTCCGTTTC+CGG - chr5_3:7186736-7186755 Msa0795250:three_prime_UTR 50.0%
ACATTACCGGTGGAGCAAAC+AGG - chr5_3:7187030-7187049 Msa0795250:three_prime_UTR 50.0%
GATTCACCTGTTTGCTCCAC+CGG + chr5_3:7187039-7187058 None:intergenic 50.0%
GGTGGAGCAAACAGGTGAAT+CGG - chr5_3:7187038-7187057 Msa0795250:three_prime_UTR 50.0%
! GTTTTCGTCAGAAACGGCGT+CGG + chr5_3:7187090-7187109 None:intergenic 50.0%
GAAAGTTGTACCTGACCGGT+GGG - chr5_3:7187379-7187398 Msa0795250:CDS 50.0%
TTAGCAAATTCCCACCGGTC+AGG + chr5_3:7187392-7187411 None:intergenic 50.0%
!! GCTAATGACGGATTTCGACG+AGG - chr5_3:7187407-7187426 Msa0795250:CDS 50.0%
GCTGGAGACACCATTCTAAC+CGG + chr5_3:7187545-7187564 None:intergenic 50.0%
ATGGTGTCTCCAGCAACTTC+TGG - chr5_3:7187551-7187570 Msa0795250:CDS 50.0%
TCTCCGATTGCGGTGAACAA+TGG - chr5_3:7187602-7187621 Msa0795250:CDS 50.0%
GCACCATTGTTCACCGCAAT+CGG + chr5_3:7187608-7187627 None:intergenic 50.0%
! ATCTTCTACGAGTGCTGCGA+CGG - chr5_3:7187802-7187821 Msa0795250:CDS 50.0%
GACGAGTTTGATGGAACCAG+AGG - chr5_3:7187949-7187968 Msa0795250:CDS 50.0%
ACGATGTAGGACGGAGAATG+AGG - chr5_3:7188021-7188040 Msa0795250:intron 50.0%
GACGGAGAATGAGGTTGAAC+CGG - chr5_3:7188030-7188049 Msa0795250:intron 50.0%
TTGAACCGGAGAGAGAGGAA+CGG - chr5_3:7188044-7188063 Msa0795250:intron 50.0%
GATGCAAACACAATCCTCGC+AGG - chr5_3:7188099-7188118 Msa0795250:intron 50.0%
! TCTGAACCTCGTGATGGTGA+TGG - chr5_3:7188148-7188167 Msa0795250:CDS 50.0%
!! TGGTGATGGTGATGGTGACT+CGG - chr5_3:7188162-7188181 Msa0795250:CDS 50.0%
CATGGCTAACAGACACTAGC+TGG - chr5_3:7188293-7188312 Msa0795250:CDS 50.0%
!! CAGACACTAGCTGGTGTCAT+TGG - chr5_3:7188302-7188321 Msa0795250:CDS 50.0%
!! CTAGCTGGTGTCATTGGACA+AGG - chr5_3:7188308-7188327 Msa0795250:CDS 50.0%
ACGCTTGCTTGAGCAAAGCA+TGG + chr5_3:7188431-7188450 None:intergenic 50.0%
ACTAGGATGCTTCCACCCTA+TGG - chr5_3:7188683-7188702 Msa0795250:five_prime_UTR 50.0%
! AAAGGAGCGTGTGTGTTGGT+GGG + chr5_3:7186638-7186657 None:intergenic 50.0%
! AAAAGGAGCGTGTGTGTTGG+TGG + chr5_3:7186639-7186658 None:intergenic 50.0%
TCTTCTTCCGACTCCGTTTC+CGG - chr5_3:7186736-7186755 Msa0795250:three_prime_UTR 50.0%
ACATTACCGGTGGAGCAAAC+AGG - chr5_3:7187030-7187049 Msa0795250:three_prime_UTR 50.0%
GATTCACCTGTTTGCTCCAC+CGG + chr5_3:7187039-7187058 None:intergenic 50.0%
GGTGGAGCAAACAGGTGAAT+CGG - chr5_3:7187038-7187057 Msa0795250:three_prime_UTR 50.0%
! GTTTTCGTCAGAAACGGCGT+CGG + chr5_3:7187090-7187109 None:intergenic 50.0%
GAAAGTTGTACCTGACCGGT+GGG - chr5_3:7187379-7187398 Msa0795250:CDS 50.0%
TTAGCAAATTCCCACCGGTC+AGG + chr5_3:7187392-7187411 None:intergenic 50.0%
!! GCTAATGACGGATTTCGACG+AGG - chr5_3:7187407-7187426 Msa0795250:CDS 50.0%
GCTGGAGACACCATTCTAAC+CGG + chr5_3:7187545-7187564 None:intergenic 50.0%
ATGGTGTCTCCAGCAACTTC+TGG - chr5_3:7187551-7187570 Msa0795250:CDS 50.0%
TCTCCGATTGCGGTGAACAA+TGG - chr5_3:7187602-7187621 Msa0795250:CDS 50.0%
GCACCATTGTTCACCGCAAT+CGG + chr5_3:7187608-7187627 None:intergenic 50.0%
! ATCTTCTACGAGTGCTGCGA+CGG - chr5_3:7187802-7187821 Msa0795250:CDS 50.0%
GACGAGTTTGATGGAACCAG+AGG - chr5_3:7187949-7187968 Msa0795250:CDS 50.0%
ACGATGTAGGACGGAGAATG+AGG - chr5_3:7188021-7188040 Msa0795250:intron 50.0%
GACGGAGAATGAGGTTGAAC+CGG - chr5_3:7188030-7188049 Msa0795250:intron 50.0%
TTGAACCGGAGAGAGAGGAA+CGG - chr5_3:7188044-7188063 Msa0795250:intron 50.0%
GATGCAAACACAATCCTCGC+AGG - chr5_3:7188099-7188118 Msa0795250:intron 50.0%
! TCTGAACCTCGTGATGGTGA+TGG - chr5_3:7188148-7188167 Msa0795250:CDS 50.0%
!! TGGTGATGGTGATGGTGACT+CGG - chr5_3:7188162-7188181 Msa0795250:CDS 50.0%
CATGGCTAACAGACACTAGC+TGG - chr5_3:7188293-7188312 Msa0795250:CDS 50.0%
!! CAGACACTAGCTGGTGTCAT+TGG - chr5_3:7188302-7188321 Msa0795250:CDS 50.0%
!! CTAGCTGGTGTCATTGGACA+AGG - chr5_3:7188308-7188327 Msa0795250:CDS 50.0%
ACGCTTGCTTGAGCAAAGCA+TGG + chr5_3:7188431-7188450 None:intergenic 50.0%
ACTAGGATGCTTCCACCCTA+TGG - chr5_3:7188683-7188702 Msa0795250:five_prime_UTR 50.0%
! AAGGAGCGTGTGTGTTGGTG+GGG + chr5_3:7186637-7186656 None:intergenic 55.0%
GAAGAAACTACCACCGGCGA+CGG + chr5_3:7186721-7186740 None:intergenic 55.0%
!! GTTGATGGCGACATTACCGG+TGG - chr5_3:7187020-7187039 Msa0795250:three_prime_UTR 55.0%
GCAAACAGGTGAATCGGCGA+CGG - chr5_3:7187044-7187063 Msa0795250:three_prime_UTR 55.0%
GGAAAGTTGTACCTGACCGG+TGG - chr5_3:7187378-7187397 Msa0795250:CDS 55.0%
AGGAACAGCTATGGCGACAG+CGG - chr5_3:7187481-7187500 Msa0795250:CDS 55.0%
AACAGTAGCTATGGCGGCAC+CGG - chr5_3:7187523-7187542 Msa0795250:CDS 55.0%
!! TATGGCGGCACCGGTTAGAA+TGG - chr5_3:7187532-7187551 Msa0795250:CDS 55.0%
TTCAACTAACTCCGGCGCAG+TGG + chr5_3:7187657-7187676 None:intergenic 55.0%
GGGGCGTGGTTGTAACAGAA+GGG - chr5_3:7187828-7187847 Msa0795250:CDS 55.0%
CTTAATGTGGGTGGAGCTGC+TGG - chr5_3:7187908-7187927 Msa0795250:CDS 55.0%
ACATGAGGAGCCTCAACCTC+TGG + chr5_3:7187968-7187987 None:intergenic 55.0%
TGAGGTTGAACCGGAGAGAG+AGG - chr5_3:7188039-7188058 Msa0795250:intron 55.0%
TGAACCGGAGAGAGAGGAAC+GGG - chr5_3:7188045-7188064 Msa0795250:intron 55.0%
TGTTCCCGTTCCTCTCTCTC+CGG + chr5_3:7188052-7188071 None:intergenic 55.0%
GCAGGAGACTGATCGAGGAT+CGG - chr5_3:7188117-7188136 Msa0795250:intron 55.0%
CCATCACCATCACCATCACG+AGG + chr5_3:7188157-7188176 None:intergenic 55.0%
!! CCTCGTGATGGTGATGGTGA+TGG - chr5_3:7188154-7188173 Msa0795250:CDS 55.0%
!! CGGATGATCAAGAGCGTCGT+TGG - chr5_3:7188182-7188201 Msa0795250:CDS 55.0%
! AAGGAGCGTGTGTGTTGGTG+GGG + chr5_3:7186637-7186656 None:intergenic 55.0%
GAAGAAACTACCACCGGCGA+CGG + chr5_3:7186721-7186740 None:intergenic 55.0%
!! GTTGATGGCGACATTACCGG+TGG - chr5_3:7187020-7187039 Msa0795250:three_prime_UTR 55.0%
GCAAACAGGTGAATCGGCGA+CGG - chr5_3:7187044-7187063 Msa0795250:three_prime_UTR 55.0%
GGAAAGTTGTACCTGACCGG+TGG - chr5_3:7187378-7187397 Msa0795250:CDS 55.0%
AGGAACAGCTATGGCGACAG+CGG - chr5_3:7187481-7187500 Msa0795250:CDS 55.0%
AACAGTAGCTATGGCGGCAC+CGG - chr5_3:7187523-7187542 Msa0795250:CDS 55.0%
!! TATGGCGGCACCGGTTAGAA+TGG - chr5_3:7187532-7187551 Msa0795250:CDS 55.0%
TTCAACTAACTCCGGCGCAG+TGG + chr5_3:7187657-7187676 None:intergenic 55.0%
GGGGCGTGGTTGTAACAGAA+GGG - chr5_3:7187828-7187847 Msa0795250:CDS 55.0%
CTTAATGTGGGTGGAGCTGC+TGG - chr5_3:7187908-7187927 Msa0795250:CDS 55.0%
ACATGAGGAGCCTCAACCTC+TGG + chr5_3:7187968-7187987 None:intergenic 55.0%
TGAGGTTGAACCGGAGAGAG+AGG - chr5_3:7188039-7188058 Msa0795250:intron 55.0%
TGAACCGGAGAGAGAGGAAC+GGG - chr5_3:7188045-7188064 Msa0795250:intron 55.0%
TGTTCCCGTTCCTCTCTCTC+CGG + chr5_3:7188052-7188071 None:intergenic 55.0%
GCAGGAGACTGATCGAGGAT+CGG - chr5_3:7188117-7188136 Msa0795250:intron 55.0%
CCATCACCATCACCATCACG+AGG + chr5_3:7188157-7188176 None:intergenic 55.0%
!! CCTCGTGATGGTGATGGTGA+TGG - chr5_3:7188154-7188173 Msa0795250:CDS 55.0%
!! CGGATGATCAAGAGCGTCGT+TGG - chr5_3:7188182-7188201 Msa0795250:CDS 55.0%
AACAGGTGAATCGGCGACGG+CGG - chr5_3:7187047-7187066 Msa0795250:three_prime_UTR 60.0%
GCCATAGCTGTTCCTGCTGC+CGG + chr5_3:7187476-7187495 None:intergenic 60.0%
CATGAGTTGCACCACTGCGC+CGG - chr5_3:7187643-7187662 Msa0795250:CDS 60.0%
CGGGGCGTGGTTGTAACAGA+AGG - chr5_3:7187827-7187846 Msa0795250:CDS 60.0%
AATGTGGGTGGAGCTGCTGG+CGG - chr5_3:7187911-7187930 Msa0795250:CDS 60.0%
TCCTCGCAGGAGACTGATCG+AGG - chr5_3:7188112-7188131 Msa0795250:intron 60.0%
TCCTCGATCAGTCTCCTGCG+AGG + chr5_3:7188116-7188135 None:intergenic 60.0%
AACAGGTGAATCGGCGACGG+CGG - chr5_3:7187047-7187066 Msa0795250:three_prime_UTR 60.0%
GCCATAGCTGTTCCTGCTGC+CGG + chr5_3:7187476-7187495 None:intergenic 60.0%
CATGAGTTGCACCACTGCGC+CGG - chr5_3:7187643-7187662 Msa0795250:CDS 60.0%
CGGGGCGTGGTTGTAACAGA+AGG - chr5_3:7187827-7187846 Msa0795250:CDS 60.0%
AATGTGGGTGGAGCTGCTGG+CGG - chr5_3:7187911-7187930 Msa0795250:CDS 60.0%
TCCTCGCAGGAGACTGATCG+AGG - chr5_3:7188112-7188131 Msa0795250:intron 60.0%
TCCTCGATCAGTCTCCTGCG+AGG + chr5_3:7188116-7188135 None:intergenic 60.0%
CGCTAACCTAACGCCGTCGC+CGG - chr5_3:7186705-7186724 Msa0795250:three_prime_UTR 65.0%
TAACCTAACGCCGTCGCCGG+TGG - chr5_3:7186708-7186727 Msa0795250:three_prime_UTR 65.0%
GCCGGCAGCAGGAACAGCTA+TGG - chr5_3:7187472-7187491 Msa0795250:CDS 65.0%
! CTACGAGTGCTGCGACGGCA+CGG - chr5_3:7187807-7187826 Msa0795250:CDS 65.0%
! TACGAGTGCTGCGACGGCAC+GGG - chr5_3:7187808-7187827 Msa0795250:CDS 65.0%
CGCTAACCTAACGCCGTCGC+CGG - chr5_3:7186705-7186724 Msa0795250:three_prime_UTR 65.0%
TAACCTAACGCCGTCGCCGG+TGG - chr5_3:7186708-7186727 Msa0795250:three_prime_UTR 65.0%
GCCGGCAGCAGGAACAGCTA+TGG - chr5_3:7187472-7187491 Msa0795250:CDS 65.0%
! CTACGAGTGCTGCGACGGCA+CGG - chr5_3:7187807-7187826 Msa0795250:CDS 65.0%
! TACGAGTGCTGCGACGGCAC+GGG - chr5_3:7187808-7187827 Msa0795250:CDS 65.0%
CTACCACCGGCGACGGCGTT+AGG + chr5_3:7186714-7186733 None:intergenic 70.0%
! ACGAGTGCTGCGACGGCACG+GGG - chr5_3:7187809-7187828 Msa0795250:CDS 70.0%
CTACCACCGGCGACGGCGTT+AGG + chr5_3:7186714-7186733 None:intergenic 70.0%
! ACGAGTGCTGCGACGGCACG+GGG - chr5_3:7187809-7187828 Msa0795250:CDS 70.0%
! TGCTGCGACGGCACGGGGCG+TGG - chr5_3:7187814-7187833 Msa0795250:CDS 80.0%
! TGCTGCGACGGCACGGGGCG+TGG - chr5_3:7187814-7187833 Msa0795250:CDS 80.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 7186632 7188760 7186632 ID=Msa0795250;Name=Msa0795250
chr5_3 mRNA 7186632 7188760 7186632 ID=Msa0795250-mRNA-1;Parent=Msa0795250;Name=Msa0795250-mRNA-1;_AED=0.06;_eAED=0.06;_QI=226|1|1|1|0.5|0.33|3|541|365
chr5_3 exon 7186632 7188021 7186632 ID=Msa0795250-mRNA-1:exon:2943;Parent=Msa0795250-mRNA-1
chr5_3 exon 7188120 7188433 7188120 ID=Msa0795250-mRNA-1:exon:2942;Parent=Msa0795250-mRNA-1
chr5_3 exon 7188600 7188760 7188600 ID=Msa0795250-mRNA-1:exon:2941;Parent=Msa0795250-mRNA-1
chr5_3 five_prime_UTR 7188600 7188760 7188600 ID=Msa0795250-mRNA-1:five_prime_utr;Parent=Msa0795250-mRNA-1
chr5_3 five_prime_UTR 7188369 7188433 7188369 ID=Msa0795250-mRNA-1:five_prime_utr;Parent=Msa0795250-mRNA-1
chr5_3 CDS 7188120 7188368 7188120 ID=Msa0795250-mRNA-1:cds;Parent=Msa0795250-mRNA-1
chr5_3 CDS 7187173 7188021 7187173 ID=Msa0795250-mRNA-1:cds;Parent=Msa0795250-mRNA-1
chr5_3 three_prime_UTR 7186632 7187172 7186632 ID=Msa0795250-mRNA-1:three_prime_utr;Parent=Msa0795250-mRNA-1
Gene Sequence

>Msa0795250

ATGGCGACATTACCGGTGGAGCAAACAGGTGAATCGGCGACGGCGGAGTCGCAGAGATCGATTCCGACGCCGTTTCTGACGAAAACGTATCAACTTGTTGATGATTCTTCCGTTGATGATTTGGTTTCATGGAATGAAGATGGAACAAGCTTCATAGTTTGGAAGCCTGCTGAATTTGCTAGAGATTTGCTTCCAAAGTATTTCAAACACAATAATTTCTCCAGTTTCGTTCGTCAACTCAATACTTATGGATTTCGGAAAGTTGTACCTGACCGGTGGGAATTTGCTAATGACGGATTTCGACGAGGCGAGAAAAATTTGCTTCGAGATATTCAGCGGAGAAAAATATTGCCGGCAGCAGGAACAGCTATGGCGACAGCGGTAGCTGCAGCTAATACTGTAACAGTAGCTATGGCGGCACCGGTTAGAATGGTGTCTCCAGCAACTTCTGGTGATGAACAGGTGGTTTCGTCGAATTCATCTCCGATTGCGGTGAACAATGGTGCTACAGTGCAGCGTAGCATGAGTTGCACCACTGCGCCGGAGTTAGTTGAAGAGAATGAAAGGCTTAAGAAAGAGAATATGCAATTGAGTAATGAGCTAAGTCAATTGAAAGGTCTTTGTAATAATATACTTGCTATGATGAGTAATTATGCTTCTGGTTTTAGTAGACAGTTAGAATCTTCTACGAGTGCTGCGACGGCACGGGGCGTGGTTGTAACAGAAGGGAAAATTTTGGATCTTTTGCCTATAAGGAATGTTTCATTACCTGAGGAAAATGTAGTGCTTAATGTGGGTGGAGCTGCTGGCGGTGTGCCATGTGAGATGACGAGTTTGATGGAACCAGAGGTTGAGGCTCCTCATGTTCCTAAGCTGTTTGGGGTTTCAATTGGGCTTAAACGATGTAGGACGGAGAATGAGGTTGAACCGGAGAGAGAGGAACGGGAACAGCATCAACAAATTCAAATGCAAGTGCAGATGCAAACACAATCCTCGCAGGAGACTGATCGAGGATCGGATGTGAAATCTGAACCTCGTGATGGTGATGGTGATGGTGACTCGGATGATCAAGAGCGTCGTTGGAAATTGACGAAATAG

Protein sequence

>Msa0795250

MATLPVEQTGESATAESQRSIPTPFLTKTYQLVDDSSVDDLVSWNEDGTSFIVWKPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDGFRRGEKNLLRDIQRRKILPAAGTAMATAVAAANTVTVAMAAPVRMVSPATSGDEQVVSSNSSPIAVNNGATVQRSMSCTTAPELVEENERLKKENMQLSNELSQLKGLCNNILAMMSNYASGFSRQLESSTSAATARGVVVTEGKILDLLPIRNVSLPEENVVLNVGGAAGGVPCEMTSLMEPEVEAPHVPKLFGVSIGLKRCRTENEVEPEREEREQHQQIQMQVQMQTQSSQETDRGSDVKSEPRDGDGDGDSDDQERRWKLTK*