AlfalfaGEDB | Msa0598390

M. sativa cultivar zhongmu-4 / Msa0598390

KEGG: K17541|K20177
GO: GO:0002090 GO:0002092 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0006810 GO:0006897 GO:0006898 GO:0007034 GO:0007041 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0008150 GO:0008152 GO:0008333 GO:0009893 GO:0009966 GO:0009968 GO:0009987 GO:0010604 GO:0010646 GO:0010648 GO:0016055 GO:0016192 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0030100 GO:0030111 GO:0030178 GO:0031323 GO:0031325 GO:0031623 GO:0032879 GO:0043112 GO:0043170 GO:0044237 GO:0044260 GO:0045807 GO:0046907 GO:0048259 GO:0048260 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060070 GO:0060255 GO:0060627 GO:0060828 GO:0065007 GO:0071704 GO:0090090 GO:0098657 GO:0198738 GO:1905114 GO:2000286 GO:2000369 GO:2000370
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0598390	XP_003605398.2	97.198	928	26	0	1	928	1	928	0.0	1861

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0598390	sp\|F4I313\|SCY2A_ARATH	65.576	947	272	11	1	927	1	913	0.0	1222

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0034560	Msa0598390	0.806997	6.267575e-50	-8.615850e-47
Msa0172180	Msa0598390	0.813942	1.982829e-51	-8.615850e-47
Msa0218530	Msa0598390	0.846990	1.534740e-59	-8.615850e-47
Msa0218650	Msa0598390	0.820704	5.960063e-53	-8.615850e-47
Msa0258220	Msa0598390	0.838622	2.577795e-57	-8.615850e-47
Msa0258700	Msa0598390	0.838816	2.296782e-57	-8.615850e-47
Msa0335890	Msa0598390	0.828069	1.103369e-54	-8.615850e-47
Msa0487490	Msa0598390	-0.805757	1.144069e-49	-8.615850e-47
Msa0598390	Msa0634510	0.821956	3.064969e-53	-8.615850e-47
Msa0598390	Msa0645740	0.803792	2.944050e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0598390	MtrunA17_Chr4g0013741	97.094	929	26	1	1	928	1	929	0.0	1858
Msa0598390	MtrunA17_Chr6g0485441	22.491	578	372	15	27	585	5	525	2.40e-23	106

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0598390	AT1G22870.1	65.576	947	272	11	1	927	1	913	0.0	1222
Msa0598390	AT1G71410.1	64.637	936	295	12	1	927	1	909	0.0	1191
Msa0598390	AT1G71410.2	64.637	936	295	12	1	927	1	909	0.0	1191
Msa0598390	AT1G22870.4	68.100	837	229	6	1	827	1	809	0.0	1174
Msa0598390	AT1G22870.3	62.788	782	237	11	166	927	1	748	0.0	944
Msa0598390	AT1G22870.2	61.560	718	222	11	230	927	9	692	0.0	833
Msa0598390	AT2G40730.1	22.042	617	397	16	40	630	18	576	4.08e-20	96.7

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Find 268 sgRNAs with CRISPR-Local

Find 935 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCATTGGTAGAATCAT+CGG	0.526198	4_2:+33196774	None:intergenic
AAAACTTTCCTCAGCCGCCT+TGG	0.460360	4_2:+33204871	None:intergenic
AAAATGGCGAAGTAAGGTTG+GGG	0.578899	4_2:-33205385	Msa0598390:five_prime_UTR
AAACTATCTCCTGCAGTTAA+CGG	0.459043	4_2:-33192977	Msa0598390:CDS
AAAGCTTCCAGGCTAAAGCG+GGG	0.727661	4_2:+33205002	None:intergenic
AAAGTCCTGATTACTGCAAC+TGG	0.357430	4_2:-33191824	Msa0598390:three_prime_UTR
AAATAGAATTTGCAACCCCA+AGG	0.546112	4_2:+33193425	None:intergenic
AAATGGCGAAGTAAGGTTGG+GGG	0.681062	4_2:-33205384	Msa0598390:five_prime_UTR
AACACCCAAACACAAACAAC+CGG	0.467481	4_2:+33204938	None:intergenic
AACAGCCAAATCATACATAA+TGG	0.392905	4_2:+33191759	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAATTTCATCTGTAGTAACA+AGG	+	chr4_2:33193086-33193105	None:intergenic	30.0%
AAGAAAATTACGCAAAACAG+TGG	-	chr4_2:33193185-33193204	Msa0598390:intron	30.0%
CAATTTAGTCTGTTGTAACA+AGG	+	chr4_2:33193281-33193300	None:intergenic	30.0%
TATAGCTCGATGAATAAGAT+GGG	+	chr4_2:33193673-33193692	None:intergenic	30.0%
AATGAAAAAAGTTGTCACCT+CGG	+	chr4_2:33193700-33193719	None:intergenic	30.0%
AGTACAATTGTAGTTAGAGA+TGG	-	chr4_2:33193823-33193842	Msa0598390:intron	30.0%
ATCTCCAAATTCAAAAACAC+AGG	+	chr4_2:33193863-33193882	None:intergenic	30.0%
GTGGAACATTTGATAAGATT+AGG	-	chr4_2:33194065-33194084	Msa0598390:intron	30.0%
CAATAATGATGCAGAGAATA+TGG	-	chr4_2:33194148-33194167	Msa0598390:intron	30.0%
GCAATATATCTGCTATATCT+AGG	-	chr4_2:33194193-33194212	Msa0598390:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	33191729	33205420	33191729	ID=Msa0598390;Name=Msa0598390
chr4_2	mRNA	33191729	33205420	33191729	ID=Msa0598390-mRNA-1;Parent=Msa0598390;Name=Msa0598390-mRNA-1;_AED=0.09;_eAED=0.09;_QI=250\|1\|1\|1\|0.92\|1\|14\|377\|928
chr4_2	exon	33191729	33193054	33191729	ID=Msa0598390-mRNA-1:exon:8015;Parent=Msa0598390-mRNA-1
chr4_2	exon	33193188	33193306	33193188	ID=Msa0598390-mRNA-1:exon:8014;Parent=Msa0598390-mRNA-1
chr4_2	exon	33193417	33193578	33193417	ID=Msa0598390-mRNA-1:exon:8013;Parent=Msa0598390-mRNA-1
chr4_2	exon	33194728	33194790	33194728	ID=Msa0598390-mRNA-1:exon:8012;Parent=Msa0598390-mRNA-1
chr4_2	exon	33195780	33195908	33195780	ID=Msa0598390-mRNA-1:exon:8011;Parent=Msa0598390-mRNA-1
chr4_2	exon	33196010	33196123	33196010	ID=Msa0598390-mRNA-1:exon:8010;Parent=Msa0598390-mRNA-1
chr4_2	exon	33196755	33196841	33196755	ID=Msa0598390-mRNA-1:exon:8009;Parent=Msa0598390-mRNA-1
chr4_2	exon	33197645	33197731	33197645	ID=Msa0598390-mRNA-1:exon:8008;Parent=Msa0598390-mRNA-1
chr4_2	exon	33197828	33197889	33197828	ID=Msa0598390-mRNA-1:exon:8007;Parent=Msa0598390-mRNA-1
chr4_2	exon	33199800	33199926	33199800	ID=Msa0598390-mRNA-1:exon:8006;Parent=Msa0598390-mRNA-1
chr4_2	exon	33200556	33200738	33200556	ID=Msa0598390-mRNA-1:exon:8005;Parent=Msa0598390-mRNA-1
chr4_2	exon	33203089	33203196	33203089	ID=Msa0598390-mRNA-1:exon:8004;Parent=Msa0598390-mRNA-1
chr4_2	exon	33203448	33203552	33203448	ID=Msa0598390-mRNA-1:exon:8003;Parent=Msa0598390-mRNA-1
chr4_2	exon	33204679	33205420	33204679	ID=Msa0598390-mRNA-1:exon:8002;Parent=Msa0598390-mRNA-1
chr4_2	five_prime_UTR	33205171	33205420	33205171	ID=Msa0598390-mRNA-1:five_prime_utr;Parent=Msa0598390-mRNA-1
chr4_2	CDS	33204679	33205170	33204679	ID=Msa0598390-mRNA-1:cds;Parent=Msa0598390-mRNA-1
chr4_2	CDS	33203448	33203552	33203448	ID=Msa0598390-mRNA-1:cds;Parent=Msa0598390-mRNA-1
chr4_2	CDS	33203089	33203196	33203089	ID=Msa0598390-mRNA-1:cds;Parent=Msa0598390-mRNA-1
chr4_2	CDS	33200556	33200738	33200556	ID=Msa0598390-mRNA-1:cds;Parent=Msa0598390-mRNA-1
chr4_2	CDS	33199800	33199926	33199800	ID=Msa0598390-mRNA-1:cds;Parent=Msa0598390-mRNA-1
chr4_2	CDS	33197828	33197889	33197828	ID=Msa0598390-mRNA-1:cds;Parent=Msa0598390-mRNA-1
chr4_2	CDS	33197645	33197731	33197645	ID=Msa0598390-mRNA-1:cds;Parent=Msa0598390-mRNA-1
chr4_2	CDS	33196755	33196841	33196755	ID=Msa0598390-mRNA-1:cds;Parent=Msa0598390-mRNA-1
chr4_2	CDS	33196010	33196123	33196010	ID=Msa0598390-mRNA-1:cds;Parent=Msa0598390-mRNA-1
chr4_2	CDS	33195780	33195908	33195780	ID=Msa0598390-mRNA-1:cds;Parent=Msa0598390-mRNA-1
chr4_2	CDS	33194728	33194790	33194728	ID=Msa0598390-mRNA-1:cds;Parent=Msa0598390-mRNA-1
chr4_2	CDS	33193417	33193578	33193417	ID=Msa0598390-mRNA-1:cds;Parent=Msa0598390-mRNA-1
chr4_2	CDS	33193188	33193306	33193188	ID=Msa0598390-mRNA-1:cds;Parent=Msa0598390-mRNA-1
chr4_2	CDS	33192106	33193054	33192106	ID=Msa0598390-mRNA-1:cds;Parent=Msa0598390-mRNA-1
chr4_2	three_prime_UTR	33191729	33192105	33191729	ID=Msa0598390-mRNA-1:three_prime_utr;Parent=Msa0598390-mRNA-1

Gene Sequence

>Msa0598390

ATGTCCCTTAACATGAAAACCCTAACCCAAGCCTTCGCAAAAACCGCAACCCTAATAGAAAAAACCGTTTCAACAACCGTTCAAGAAGTAACCGGTCCAAAGCCTCTTCAAGACTACGACCTTCTCCACCAGATCGGTTCGGCCGGCCCCGCTTTAGCCTGGAAGCTTTACTCCGCCAAATCACGCGATCCGTCTCGGCAGCATCAGTATCCGGTTGTTTGTGTTTGGGTGTTGGATAAAAAGGCGTTGTCGGAGGCGAGATTGAAGGCTGGATTGACCAAGGCGGCTGAGGAAAGTTTTTTGGATTTGATTAGGATGGATGCTGGGAAGATGGTTAGGTTGAGACATCCGGGGATTGTGCATGTTGTTCAAGGGTTGGATGAGAGTAAGAATGCGATGGCGATGGTTACTGAACCGTTGTTTGCTTCCGTTGCGAATACTCTTGGGAAGCTTGATAATGTTTCTAGTGTTCCTAAGGATCTTAAGGGAATGGAAATGGGATTGTTGGAGGTGAAGCATGGTTTACTTCAGATTGCGGAGTCGTTGGATTTTCTCCACAACCATGCCCATCTTATTCATCGAGCTATAGCACCCGAGAATGTTTTTATCACATTGAGTGGAGCCTGGAAACTTGGTGGATTTGGTTTTGCAATTTCTTCTCAGAACCCTGGTGACTCATCTAATCTGCATGCTTTCCATTATGCTGAATATGATGTTGAAGACTCTGTTTTGCCACTTCAGCCATCCATTAATTACACTGCTCCTGAGATGGTGAGGAGCACCACTTCTTCAGCTGGGTGCTATTCTGATATTTTCAGTTTTGGATGTCTTGCCTACCATTTAATTGCTCGCAAGCCTTTGTTTGACTGCAACAACAATGTCAAGATGTACATGAATACATTGACTTACTTATCCAGTGATGCTTTCTCATCTATCCCATCGGATCTGGTTCCTGACTTGCAAAGGATGCTCTCTTCAAATGAATCTTTCAGGCCAAGTGCAATGGATTTTACAGGCTCACCATTTTTTCGGAATGACACTAGGTTACGTGCTCTGCGTTTCCTGGACCACATGCTTGAAAGAGATAACATGCAGAAGTCAGAGTTCTTAAAAGCATTGTCAGATATGTGGAAAGATTTTGATTCCCGTGTATTACGATACAAGGTCCTTCCACCACTTTGTGCAGAACTTAGGAATGTCGTTATACAACCGATGATTCTACCAATGGTTTTAACCATTGCAGAGTCTCAGGACAAGAATGACTTTGAGCAATCAACACTTCCAGCCCTTGTCCCTGTCTTAAGCACTGCTTCTGGTGATACAATGCTACTGCTTCTGAAGCACGCCGAGCTAATAATAAACAAGACTAGTCAAGACCATTTAATTTCACATGTTCTTCCAATGATTGTTCGAGCCTATGATGATAATGATTCACGTTTACAAGAAGAGGTGTTGAAAAAGTCGGTATCCCTTGCCAAAGAACTTGATACCCAGCTGGTGAAACAAGTGATTTTACCACGTGTTCATGGACTAGCACTGAAAACAACAGTTGCTGCGGTTAGAGTCAATGCTTTGCTTTGCCTAGGAGACATGGTCAACCGACTTGATAAACATGCTGTCCTGGAAATCTTGCAAACTATTCAGCGTTGCACTGCTGTTGACCGCTCTCCTCCAACCCTTATGTGTACCCTTGGGGTTGCAAATTCTATTTTTAAGCAGTACGGAGTAGAATTTGTTGCTGAGCATGTTCTTCCATTGCTTATGCCACTCCTGACTGCTCAACAGCTGAATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGAATATCCTCCATAAGATAGAAGAGAAGCGAGGAGTTGCTGTGACTGATTCTGGAATCCCAGAGGTAAAACTATCTCCTGCAGTTAACGGCCTTCAGGTGGAAGCTCCAAGGACAACCAGCAGCACCGTTGCTTCAACAAAAAGCAGCTTCTCTTGGGATGCAGATTGGGGTCCTAAAGCAACGGGCCCCGCCAATTCTGTCCAGAATTCTATTAATACATCTAATAAATCTGTGATAGGAAACCCTGTGGGTCAAGTAACATCCATACAAAATAATTTGCCCTTATCTGGTGTATCTAATCAGCAAACATCCAATTCTTGTCCTTCAGTAGATATAGAGTGGCCGCCTCGTGCATCTTCTGGTCTTATCTCACAATTTGGTGATACTGAAAGGAAAACAGTTGCAGCTGGAACCTCATCCACATCCAATCTTGAAGATGATGATCCTTTTGCTGATTGGCCCCCACGCCCTAGTGGTTCATTATCCAGTGCATCTGGAAATTCCAACAATGGTATTTCAGGAATGGCATTAAACAAGATAGGGCATAATTCAATGACAAGCAATTCAAGCAATCTTGGTCTCCAGGCCAGCAACAATTGGTCTGCCAAGTCCCAAAATTCTGTGGAGTCTATCGGTTTGAACCCAAGGAATGCTAGCTCATCTATCAGTAACCTGAACAATGGCTTTGAACCTCAGAGTTCTCTTGGGTTCTTGAAACAAAGTCAGGCTTTTCCGGCATCAAATGTTGTTTCATCATCATATAATAATGTTAAATCAACTGATCTTGGATCAATATTTTCTTCCAACAAGAATGAACAACTTGCACCTAGACTCGCACCACCCCCTTCAACCACAGTGGGTAGAGGGCGAGGAAGAGGCAGAGGAGCGACTTCATCCAGACAGCACTCTCATACCAAGTCAAGCACTGAGCAGCCACCCCTTTTGGATTTGTTGGGGTAA

Protein sequence

>Msa0598390

MSLNMKTLTQAFAKTATLIEKTVSTTVQEVTGPKPLQDYDLLHQIGSAGPALAWKLYSAKSRDPSRQHQYPVVCVWVLDKKALSEARLKAGLTKAAEESFLDLIRMDAGKMVRLRHPGIVHVVQGLDESKNAMAMVTEPLFASVANTLGKLDNVSSVPKDLKGMEMGLLEVKHGLLQIAESLDFLHNHAHLIHRAIAPENVFITLSGAWKLGGFGFAISSQNPGDSSNLHAFHYAEYDVEDSVLPLQPSINYTAPEMVRSTTSSAGCYSDIFSFGCLAYHLIARKPLFDCNNNVKMYMNTLTYLSSDAFSSIPSDLVPDLQRMLSSNESFRPSAMDFTGSPFFRNDTRLRALRFLDHMLERDNMQKSEFLKALSDMWKDFDSRVLRYKVLPPLCAELRNVVIQPMILPMVLTIAESQDKNDFEQSTLPALVPVLSTASGDTMLLLLKHAELIINKTSQDHLISHVLPMIVRAYDDNDSRLQEEVLKKSVSLAKELDTQLVKQVILPRVHGLALKTTVAAVRVNALLCLGDMVNRLDKHAVLEILQTIQRCTAVDRSPPTLMCTLGVANSIFKQYGVEFVAEHVLPLLMPLLTAQQLNVQQFAKYMLFVKNILHKIEEKRGVAVTDSGIPEVKLSPAVNGLQVEAPRTTSSTVASTKSSFSWDADWGPKATGPANSVQNSINTSNKSVIGNPVGQVTSIQNNLPLSGVSNQQTSNSCPSVDIEWPPRASSGLISQFGDTERKTVAAGTSSTSNLEDDDPFADWPPRPSGSLSSASGNSNNGISGMALNKIGHNSMTSNSSNLGLQASNNWSAKSQNSVESIGLNPRNASSSISNLNNGFEPQSSLGFLKQSQAFPASNVVSSSYNNVKSTDLGSIFSSNKNEQLAPRLAPPPSTTVGRGRGRGRGATSSRQHSHTKSSTEQPPLLDLLG*