AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1296830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1296830 MtrunA17_Chr4g0053811 98.750 80 1 0 1 80 1 80 1.76e-54 163
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1296830 AT2G23090.1 81.818 77 14 0 1 77 1 77 1.45e-43 135

Find 45 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTCCGATAAAGAAATT+AGG 0.147345 8_3:-56546767 Msa1296830:five_prime_UTR
TGCTTCCCACTTCATGCTTC+TGG 0.237957 8_3:+56544934 None:intergenic
GTCAAAGTGTAACTGTTTAA+TGG 0.239196 8_3:-56544763 Msa1296830:three_prime_UTR
CCAAATCACAGTTGCTTCAT+AGG 0.255940 8_3:+56544602 None:intergenic
CAAAACCCTAATTTCTTTAT+CGG 0.268738 8_3:+56546761 None:intergenic
GATACATCAATTTATATATT+CGG 0.281395 8_3:+56546839 None:intergenic
ATACATTATATCATATTATA+TGG 0.295545 8_3:-56544906 Msa1296830:three_prime_UTR
CAAGTGAAGAGATCAGATTT+TGG 0.307415 8_3:+56544973 None:intergenic
TTCCTATGTGTTTGTCTTGT+TGG 0.312116 8_3:-56544856 Msa1296830:three_prime_UTR
ATGTGTTTGTCTTGTTGGTT+AGG 0.319757 8_3:-56544851 Msa1296830:three_prime_UTR
CTCCGAAAGCAACCTAAAAT+TGG 0.328459 8_3:-56544659 Msa1296830:three_prime_UTR
TTCTTCCGATAAAGAAATTA+GGG 0.339605 8_3:-56546766 Msa1296830:five_prime_UTR
AAAATTGGTAAATTATTCAT+TGG 0.362826 8_3:-56544644 Msa1296830:three_prime_UTR
TTCATGCTTCTGGTTTAAGA+TGG 0.414107 8_3:+56544944 None:intergenic
TTGAGGGTCTCTCTCAGCCA+TGG 0.415376 8_3:-56546741 Msa1296830:exon
CAACAGTTTCTCACACTTGA+GGG 0.433341 8_3:+56544796 None:intergenic
TGTGTTTGTCTTGTTGGTTA+GGG 0.470163 8_3:-56544850 Msa1296830:three_prime_UTR
ATTGGTAAATTATTCATTGG+TGG 0.472091 8_3:-56544641 Msa1296830:three_prime_UTR
CCTATGAAGCAACTGTGATT+TGG 0.475024 8_3:-56544602 Msa1296830:three_prime_UTR
TGAGGGTCTCTCTCAGCCAT+GGG 0.480356 8_3:-56546740 Msa1296830:exon
TGTGCGCAAAACGAAAATAA+TGG 0.480751 8_3:+56546799 None:intergenic
TCATGCTTCTGGTTTAAGAT+GGG 0.486977 8_3:+56544945 None:intergenic
AGCAACTGTGATTTGGTGTA+TGG 0.488541 8_3:-56544595 Msa1296830:three_prime_UTR
CTCGAGAAGCAGAAGAATGC+TGG 0.496068 8_3:-56546674 Msa1296830:CDS
CTTAAACCAGAAGCATGAAG+TGG 0.532280 8_3:-56544940 Msa1296830:exon
CAGCATTCTTCTGCTTCTCG+AGG 0.532542 8_3:+56546675 None:intergenic
TCTCTCTCAGCCATGGGTGG+AGG 0.540024 8_3:-56546734 Msa1296830:exon
CTTGCACTTCACTTCTGATG+TGG 0.540448 8_3:+56545017 None:intergenic
TCAACAGTTTCTCACACTTG+AGG 0.541675 8_3:+56544795 None:intergenic
TTGACCGTTACCTCCACCCA+TGG 0.542711 8_3:+56546724 None:intergenic
TCAGCCATGGGTGGAGGTAA+CGG 0.548723 8_3:-56546728 Msa1296830:exon
GGGTCTCTCTCAGCCATGGG+TGG 0.552601 8_3:-56546737 Msa1296830:exon
ATCTTATACCAACGTTAGCA+TGG 0.554816 8_3:+56544560 None:intergenic
CATGCTTCTGGTTTAAGATG+GGG 0.555513 8_3:+56544946 None:intergenic
GGTAAATTATTCATTGGTGG+TGG 0.564852 8_3:-56544638 Msa1296830:three_prime_UTR
AAGCAGAAGAATGCTGGCAA+AGG 0.595797 8_3:-56546668 Msa1296830:intron
AAGCTAAGATGGCTCGCGAG+AGG 0.616608 8_3:-56546700 Msa1296830:CDS
GTTGGTTAGGGAAAGACACA+AGG 0.618351 8_3:-56544838 Msa1296830:three_prime_UTR
TTAAACCAGAAGCATGAAGT+GGG 0.633169 8_3:-56544939 Msa1296830:exon
CACATCAGAAGTGAAGTGCA+AGG 0.659147 8_3:-56545016 Msa1296830:CDS
GAAGTGCAAGGAGCATGCTG+AGG 0.671964 8_3:-56545004 Msa1296830:CDS
AACCAACAAGACAAACACAT+AGG 0.675032 8_3:+56544854 None:intergenic
TTGGTTAGGGAAAGACACAA+GGG 0.689879 8_3:-56544837 Msa1296830:three_prime_UTR
ACTGTTAGCCATGCTAACGT+TGG 0.709511 8_3:-56544568 Msa1296830:three_prime_UTR
TGGTTAGGGAAAGACACAAG+GGG 0.716480 8_3:-56544836 Msa1296830:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATGAAAATTAGAAATTA+GGG - chr8_3:56544832-56544851 Msa1296830:three_prime_UTR 10.0%
!!! CTATGTTTTATAAATTTTTA+AGG + chr8_3:56545791-56545810 None:intergenic 10.0%
!! TATAAAATTTATCATTACAA+CGG - chr8_3:56546296-56546315 Msa1296830:intron 10.0%
!! ATACATTATATCATATTATA+TGG - chr8_3:56546546-56546565 Msa1296830:intron 10.0%
!! AATATGAAAATTAGAAATTA+GGG - chr8_3:56544832-56544851 Msa1296830:three_prime_UTR 10.0%
!!! CTATGTTTTATAAATTTTTA+AGG + chr8_3:56545791-56545810 None:intergenic 10.0%
!! TATAAAATTTATCATTACAA+CGG - chr8_3:56546296-56546315 Msa1296830:intron 10.0%
!! ATACATTATATCATATTATA+TGG - chr8_3:56546546-56546565 Msa1296830:intron 10.0%
!! GATACATCAATTTATATATT+CGG + chr8_3:56544616-56544635 None:intergenic 15.0%
!!! CTAATTTCTAATTTTCATAT+TGG + chr8_3:56544833-56544852 None:intergenic 15.0%
!! CAATATGAAAATTAGAAATT+AGG - chr8_3:56544831-56544850 Msa1296830:three_prime_UTR 15.0%
!! AAAGAAATTGATGAAATTAT+TGG + chr8_3:56545077-56545096 None:intergenic 15.0%
!!! CTTTTTTTTTTTTGTTTCAA+AGG - chr8_3:56545093-56545112 Msa1296830:intron 15.0%
!!! AATGAAAATTTACTTTTCAA+GGG + chr8_3:56545280-56545299 None:intergenic 15.0%
!! ATGAAATTGAATAATATCAA+TGG - chr8_3:56545590-56545609 Msa1296830:intron 15.0%
!! TAATATTGTGTTAAAAATCA+TGG - chr8_3:56546722-56546741 Msa1296830:CDS 15.0%
!!! ATGAATAATTTACCAATTTT+AGG + chr8_3:56546808-56546827 None:intergenic 15.0%
!! AAAATTGGTAAATTATTCAT+TGG - chr8_3:56546808-56546827 Msa1296830:five_prime_UTR 15.0%
!! GATACATCAATTTATATATT+CGG + chr8_3:56544616-56544635 None:intergenic 15.0%
!!! CTAATTTCTAATTTTCATAT+TGG + chr8_3:56544833-56544852 None:intergenic 15.0%
!! CAATATGAAAATTAGAAATT+AGG - chr8_3:56544831-56544850 Msa1296830:three_prime_UTR 15.0%
!! AAAGAAATTGATGAAATTAT+TGG + chr8_3:56545077-56545096 None:intergenic 15.0%
!!! CTTTTTTTTTTTTGTTTCAA+AGG - chr8_3:56545093-56545112 Msa1296830:intron 15.0%
!!! AATGAAAATTTACTTTTCAA+GGG + chr8_3:56545280-56545299 None:intergenic 15.0%
!! ATGAAATTGAATAATATCAA+TGG - chr8_3:56545590-56545609 Msa1296830:intron 15.0%
!! TAATATTGTGTTAAAAATCA+TGG - chr8_3:56546722-56546741 Msa1296830:CDS 15.0%
!!! ATGAATAATTTACCAATTTT+AGG + chr8_3:56546808-56546827 None:intergenic 15.0%
!! AAAATTGGTAAATTATTCAT+TGG - chr8_3:56546808-56546827 Msa1296830:five_prime_UTR 15.0%
!!! TGATTTTTTCGTTGAAAAAT+TGG - chr8_3:56544857-56544876 Msa1296830:three_prime_UTR 20.0%
!!! GATTTTTTCGTTGAAAAATT+GGG - chr8_3:56544858-56544877 Msa1296830:three_prime_UTR 20.0%
!!! AATTTTTGTTTTGTATATGC+AGG - chr8_3:56544930-56544949 Msa1296830:exon 20.0%
!!! GATTATTAACAGAAGTTTTA+AGG - chr8_3:56545238-56545257 Msa1296830:intron 20.0%
!!! CAATGAAAATTTACTTTTCA+AGG + chr8_3:56545281-56545300 None:intergenic 20.0%
!!! CTTGAAAAGTAAATTTTCAT+TGG - chr8_3:56545279-56545298 Msa1296830:intron 20.0%
!!! TTTTCATTGGTTAAACATTT+TGG - chr8_3:56545292-56545311 Msa1296830:intron 20.0%
!!! TTTCATTGGTTAAACATTTT+GGG - chr8_3:56545293-56545312 Msa1296830:intron 20.0%
!! AATATCAATGGTACTTAATT+TGG - chr8_3:56545602-56545621 Msa1296830:intron 20.0%
!! TTGAATATTAAACCCAAAAA+TGG - chr8_3:56545675-56545694 Msa1296830:intron 20.0%
!!! ACACAAAATTATCCATTTTT+GGG + chr8_3:56545690-56545709 None:intergenic 20.0%
!! CAATAATGAATACTAATGTA+AGG + chr8_3:56545834-56545853 None:intergenic 20.0%
!!! CATATTGAAGAAAACTTTTT+GGG + chr8_3:56546124-56546143 None:intergenic 20.0%
!!! ACATATTGAAGAAAACTTTT+TGG + chr8_3:56546125-56546144 None:intergenic 20.0%
!!! CATATTGAATGAAACTTTTT+GGG + chr8_3:56546225-56546244 None:intergenic 20.0%
!!! ACATATTGAATGAAACTTTT+TGG + chr8_3:56546226-56546245 None:intergenic 20.0%
!! ACAACATTATAATCAGTAAA+GGG + chr8_3:56546369-56546388 None:intergenic 20.0%
!!! TGATTTTTTCGTTGAAAAAT+TGG - chr8_3:56544857-56544876 Msa1296830:three_prime_UTR 20.0%
!!! GATTTTTTCGTTGAAAAATT+GGG - chr8_3:56544858-56544877 Msa1296830:three_prime_UTR 20.0%
!!! AATTTTTGTTTTGTATATGC+AGG - chr8_3:56544930-56544949 Msa1296830:exon 20.0%
!!! GATTATTAACAGAAGTTTTA+AGG - chr8_3:56545238-56545257 Msa1296830:intron 20.0%
!!! CAATGAAAATTTACTTTTCA+AGG + chr8_3:56545281-56545300 None:intergenic 20.0%
!!! CTTGAAAAGTAAATTTTCAT+TGG - chr8_3:56545279-56545298 Msa1296830:intron 20.0%
!!! TTTTCATTGGTTAAACATTT+TGG - chr8_3:56545292-56545311 Msa1296830:intron 20.0%
!!! TTTCATTGGTTAAACATTTT+GGG - chr8_3:56545293-56545312 Msa1296830:intron 20.0%
!! AATATCAATGGTACTTAATT+TGG - chr8_3:56545602-56545621 Msa1296830:intron 20.0%
!! TTGAATATTAAACCCAAAAA+TGG - chr8_3:56545675-56545694 Msa1296830:intron 20.0%
!!! ACACAAAATTATCCATTTTT+GGG + chr8_3:56545690-56545709 None:intergenic 20.0%
!! CAATAATGAATACTAATGTA+AGG + chr8_3:56545834-56545853 None:intergenic 20.0%
!!! CATATTGAAGAAAACTTTTT+GGG + chr8_3:56546124-56546143 None:intergenic 20.0%
!!! ACATATTGAAGAAAACTTTT+TGG + chr8_3:56546125-56546144 None:intergenic 20.0%
!!! CATATTGAATGAAACTTTTT+GGG + chr8_3:56546225-56546244 None:intergenic 20.0%
!!! ACATATTGAATGAAACTTTT+TGG + chr8_3:56546226-56546245 None:intergenic 20.0%
!! ACAACATTATAATCAGTAAA+GGG + chr8_3:56546369-56546388 None:intergenic 20.0%
! TTCTTCCGATAAAGAAATTA+GGG - chr8_3:56544686-56544705 Msa1296830:three_prime_UTR 25.0%
! CAAAACCCTAATTTCTTTAT+CGG + chr8_3:56544694-56544713 None:intergenic 25.0%
!! ATAAAGAAATTAGGGTTTTG+AGG - chr8_3:56544694-56544713 Msa1296830:three_prime_UTR 25.0%
!!! TAAAGAAATTAGGGTTTTGA+GGG - chr8_3:56544695-56544714 Msa1296830:three_prime_UTR 25.0%
! TTAATTATACGTGTTAGATC+TGG - chr8_3:56544896-56544915 Msa1296830:three_prime_UTR 25.0%
!!! CTTTTTTGTTTTTTTCAAGC+TGG + chr8_3:56544959-56544978 None:intergenic 25.0%
!! TTATAGATCTGAAGTATATG+TGG - chr8_3:56545010-56545029 Msa1296830:CDS 25.0%
! CAGAACTATGATTGTAAAAT+TGG - chr8_3:56545201-56545220 Msa1296830:intron 25.0%
!!! ATTAACAGAAGTTTTAAGGA+TGG - chr8_3:56545242-56545261 Msa1296830:intron 25.0%
!!! TATTTTGATTCCATGATGTT+TGG - chr8_3:56545331-56545350 Msa1296830:intron 25.0%
! TACTTGAAATTCGTTATGTT+AGG - chr8_3:56545407-56545426 Msa1296830:intron 25.0%
! ACTTGAAATTCGTTATGTTA+GGG - chr8_3:56545408-56545427 Msa1296830:intron 25.0%
! GAACAAGTTAAAGAATTTGA+GGG - chr8_3:56545492-56545511 Msa1296830:intron 25.0%
!! CACACAAAATTATCCATTTT+TGG + chr8_3:56545691-56545710 None:intergenic 25.0%
!! CAAAAATGGATAATTTTGTG+TGG - chr8_3:56545689-56545708 Msa1296830:intron 25.0%
! TTAAGAAATTCTGACTTCTT+TGG - chr8_3:56545727-56545746 Msa1296830:intron 25.0%
! TTCCCAAACATATTGATATT+TGG - chr8_3:56545860-56545879 Msa1296830:intron 25.0%
! TGCCAAATATCAATATGTTT+GGG + chr8_3:56545865-56545884 None:intergenic 25.0%
! AAGTTTCATTCAATATGTCT+TGG - chr8_3:56546228-56546247 Msa1296830:intron 25.0%
!! TTATCATTACAACGGTTTTA+AGG - chr8_3:56546304-56546323 Msa1296830:intron 25.0%
! CACAACATTATAATCAGTAA+AGG + chr8_3:56546370-56546389 None:intergenic 25.0%
! ATTGGTAAATTATTCATTGG+TGG - chr8_3:56546811-56546830 Msa1296830:five_prime_UTR 25.0%
! TTCTTCCGATAAAGAAATTA+GGG - chr8_3:56544686-56544705 Msa1296830:three_prime_UTR 25.0%
! CAAAACCCTAATTTCTTTAT+CGG + chr8_3:56544694-56544713 None:intergenic 25.0%
!! ATAAAGAAATTAGGGTTTTG+AGG - chr8_3:56544694-56544713 Msa1296830:three_prime_UTR 25.0%
!!! TAAAGAAATTAGGGTTTTGA+GGG - chr8_3:56544695-56544714 Msa1296830:three_prime_UTR 25.0%
! TTAATTATACGTGTTAGATC+TGG - chr8_3:56544896-56544915 Msa1296830:three_prime_UTR 25.0%
!!! CTTTTTTGTTTTTTTCAAGC+TGG + chr8_3:56544959-56544978 None:intergenic 25.0%
!! TTATAGATCTGAAGTATATG+TGG - chr8_3:56545010-56545029 Msa1296830:CDS 25.0%
! CAGAACTATGATTGTAAAAT+TGG - chr8_3:56545201-56545220 Msa1296830:intron 25.0%
!!! ATTAACAGAAGTTTTAAGGA+TGG - chr8_3:56545242-56545261 Msa1296830:intron 25.0%
!!! TATTTTGATTCCATGATGTT+TGG - chr8_3:56545331-56545350 Msa1296830:intron 25.0%
! TACTTGAAATTCGTTATGTT+AGG - chr8_3:56545407-56545426 Msa1296830:intron 25.0%
! ACTTGAAATTCGTTATGTTA+GGG - chr8_3:56545408-56545427 Msa1296830:intron 25.0%
! GAACAAGTTAAAGAATTTGA+GGG - chr8_3:56545492-56545511 Msa1296830:intron 25.0%
!! CACACAAAATTATCCATTTT+TGG + chr8_3:56545691-56545710 None:intergenic 25.0%
!! CAAAAATGGATAATTTTGTG+TGG - chr8_3:56545689-56545708 Msa1296830:intron 25.0%
! TTAAGAAATTCTGACTTCTT+TGG - chr8_3:56545727-56545746 Msa1296830:intron 25.0%
! TTCCCAAACATATTGATATT+TGG - chr8_3:56545860-56545879 Msa1296830:intron 25.0%
! TGCCAAATATCAATATGTTT+GGG + chr8_3:56545865-56545884 None:intergenic 25.0%
! AAGTTTCATTCAATATGTCT+TGG - chr8_3:56546228-56546247 Msa1296830:intron 25.0%
!! TTATCATTACAACGGTTTTA+AGG - chr8_3:56546304-56546323 Msa1296830:intron 25.0%
! CACAACATTATAATCAGTAA+AGG + chr8_3:56546370-56546389 None:intergenic 25.0%
! ATTGGTAAATTATTCATTGG+TGG - chr8_3:56546811-56546830 Msa1296830:five_prime_UTR 25.0%
CTTCTTCCGATAAAGAAATT+AGG - chr8_3:56544685-56544704 Msa1296830:three_prime_UTR 30.0%
TTTCATATTGGAATTGTCGA+GGG + chr8_3:56544821-56544840 None:intergenic 30.0%
! TTTTCATATTGGAATTGTCG+AGG + chr8_3:56544822-56544841 None:intergenic 30.0%
AAAGCAATCTTGATTATACC+TGG + chr8_3:56544992-56545011 None:intergenic 30.0%
! TTGGCTTATGAGCATTTTAA+CGG - chr8_3:56545350-56545369 Msa1296830:intron 30.0%
ATAAAGGGAAAGGAATCTAA+TGG - chr8_3:56545450-56545469 Msa1296830:intron 30.0%
TAAAGGGAAAGGAATCTAAT+GGG - chr8_3:56545451-56545470 Msa1296830:intron 30.0%
CGAACAAGTTAAAGAATTTG+AGG - chr8_3:56545491-56545510 Msa1296830:intron 30.0%
GATCAAACTGCAAAAATGTA+TGG + chr8_3:56545542-56545561 None:intergenic 30.0%
CTATTGTTAAGTTTCTACAG+AGG + chr8_3:56545651-56545670 None:intergenic 30.0%
GTGCCAAATATCAATATGTT+TGG + chr8_3:56545866-56545885 None:intergenic 30.0%
ACATATTGATATTTGGCACT+TGG - chr8_3:56545867-56545886 Msa1296830:intron 30.0%
TGTAAGTTCATTACGAGTAT+TGG - chr8_3:56545969-56545988 Msa1296830:intron 30.0%
TAGTCATTGAATATGCACAT+AGG - chr8_3:56546263-56546282 Msa1296830:intron 30.0%
! AAGTGAAGAGATCAGATTTT+GGG + chr8_3:56546481-56546500 None:intergenic 30.0%
GTCAAAGTGTAACTGTTTAA+TGG - chr8_3:56546689-56546708 Msa1296830:CDS 30.0%
!!! TACCAATTTTAGGTTGCTTT+CGG + chr8_3:56546798-56546817 None:intergenic 30.0%
CTTCTTCCGATAAAGAAATT+AGG - chr8_3:56544685-56544704 Msa1296830:three_prime_UTR 30.0%
TTTCATATTGGAATTGTCGA+GGG + chr8_3:56544821-56544840 None:intergenic 30.0%
! TTTTCATATTGGAATTGTCG+AGG + chr8_3:56544822-56544841 None:intergenic 30.0%
AAAGCAATCTTGATTATACC+TGG + chr8_3:56544992-56545011 None:intergenic 30.0%
! TTGGCTTATGAGCATTTTAA+CGG - chr8_3:56545350-56545369 Msa1296830:intron 30.0%
ATAAAGGGAAAGGAATCTAA+TGG - chr8_3:56545450-56545469 Msa1296830:intron 30.0%
TAAAGGGAAAGGAATCTAAT+GGG - chr8_3:56545451-56545470 Msa1296830:intron 30.0%
CGAACAAGTTAAAGAATTTG+AGG - chr8_3:56545491-56545510 Msa1296830:intron 30.0%
GATCAAACTGCAAAAATGTA+TGG + chr8_3:56545542-56545561 None:intergenic 30.0%
CTATTGTTAAGTTTCTACAG+AGG + chr8_3:56545651-56545670 None:intergenic 30.0%
GTGCCAAATATCAATATGTT+TGG + chr8_3:56545866-56545885 None:intergenic 30.0%
ACATATTGATATTTGGCACT+TGG - chr8_3:56545867-56545886 Msa1296830:intron 30.0%
TGTAAGTTCATTACGAGTAT+TGG - chr8_3:56545969-56545988 Msa1296830:intron 30.0%
TAGTCATTGAATATGCACAT+AGG - chr8_3:56546263-56546282 Msa1296830:intron 30.0%
! AAGTGAAGAGATCAGATTTT+GGG + chr8_3:56546481-56546500 None:intergenic 30.0%
GTCAAAGTGTAACTGTTTAA+TGG - chr8_3:56546689-56546708 Msa1296830:CDS 30.0%
!!! TACCAATTTTAGGTTGCTTT+CGG + chr8_3:56546798-56546817 None:intergenic 30.0%
TGTGCGCAAAACGAAAATAA+TGG + chr8_3:56544656-56544675 None:intergenic 35.0%
TAACGGTCAAAAAGCTAAGA+TGG - chr8_3:56544741-56544760 Msa1296830:three_prime_UTR 35.0%
CAAAAAAGCTATGTCAATCC+AGG - chr8_3:56544971-56544990 Msa1296830:CDS 35.0%
TGTTTCAAAGGTTCACTGTT+TGG - chr8_3:56545105-56545124 Msa1296830:intron 35.0%
!! ACAATCATAGTTCTGAACAG+AGG + chr8_3:56545196-56545215 None:intergenic 35.0%
AATTCGTTATGTTAGGGAGT+TGG - chr8_3:56545414-56545433 Msa1296830:intron 35.0%
ATTCGTTATGTTAGGGAGTT+GGG - chr8_3:56545415-56545434 Msa1296830:intron 35.0%
! TGGGTTGGGAGAAAATATAA+AGG - chr8_3:56545434-56545453 Msa1296830:intron 35.0%
GGGTTGGGAGAAAATATAAA+GGG - chr8_3:56545435-56545454 Msa1296830:intron 35.0%
GGGAGAAAATATAAAGGGAA+AGG - chr8_3:56545440-56545459 Msa1296830:intron 35.0%
! TAAGTTTCTACAGAGGCTTT+TGG + chr8_3:56545644-56545663 None:intergenic 35.0%
GAAATTCTGACTTCTTTGGT+TGG - chr8_3:56545731-56545750 Msa1296830:intron 35.0%
CACAGTATGTAAGTTCCTTT+CGG - chr8_3:56545920-56545939 Msa1296830:intron 35.0%
! GTTTGACAAGTTCTGTTTTG+AGG - chr8_3:56546046-56546065 Msa1296830:intron 35.0%
TTGGGTTATGATGTACTATG+CGG + chr8_3:56546207-56546226 None:intergenic 35.0%
! TGCATTGCTGTAGTATTGAA+TGG - chr8_3:56546341-56546360 Msa1296830:intron 35.0%
! CAAGTGAAGAGATCAGATTT+TGG + chr8_3:56546482-56546501 None:intergenic 35.0%
!! TCATGCTTCTGGTTTAAGAT+GGG + chr8_3:56546510-56546529 None:intergenic 35.0%
!! TTCATGCTTCTGGTTTAAGA+TGG + chr8_3:56546511-56546530 None:intergenic 35.0%
! TTAAACCAGAAGCATGAAGT+GGG - chr8_3:56546513-56546532 Msa1296830:intron 35.0%
TTCCTATGTGTTTGTCTTGT+TGG - chr8_3:56546596-56546615 Msa1296830:intron 35.0%
AACCAACAAGACAAACACAT+AGG + chr8_3:56546601-56546620 None:intergenic 35.0%
! ATGTGTTTGTCTTGTTGGTT+AGG - chr8_3:56546601-56546620 Msa1296830:intron 35.0%
! TGTGTTTGTCTTGTTGGTTA+GGG - chr8_3:56546602-56546621 Msa1296830:intron 35.0%
GGTAAATTATTCATTGGTGG+TGG - chr8_3:56546814-56546833 Msa1296830:five_prime_UTR 35.0%
ATCTTATACCAACGTTAGCA+TGG + chr8_3:56546895-56546914 None:intergenic 35.0%
TGTGCGCAAAACGAAAATAA+TGG + chr8_3:56544656-56544675 None:intergenic 35.0%
TAACGGTCAAAAAGCTAAGA+TGG - chr8_3:56544741-56544760 Msa1296830:three_prime_UTR 35.0%
CAAAAAAGCTATGTCAATCC+AGG - chr8_3:56544971-56544990 Msa1296830:CDS 35.0%
TGTTTCAAAGGTTCACTGTT+TGG - chr8_3:56545105-56545124 Msa1296830:intron 35.0%
!! ACAATCATAGTTCTGAACAG+AGG + chr8_3:56545196-56545215 None:intergenic 35.0%
AATTCGTTATGTTAGGGAGT+TGG - chr8_3:56545414-56545433 Msa1296830:intron 35.0%
ATTCGTTATGTTAGGGAGTT+GGG - chr8_3:56545415-56545434 Msa1296830:intron 35.0%
! TGGGTTGGGAGAAAATATAA+AGG - chr8_3:56545434-56545453 Msa1296830:intron 35.0%
GGGTTGGGAGAAAATATAAA+GGG - chr8_3:56545435-56545454 Msa1296830:intron 35.0%
GGGAGAAAATATAAAGGGAA+AGG - chr8_3:56545440-56545459 Msa1296830:intron 35.0%
! TAAGTTTCTACAGAGGCTTT+TGG + chr8_3:56545644-56545663 None:intergenic 35.0%
GAAATTCTGACTTCTTTGGT+TGG - chr8_3:56545731-56545750 Msa1296830:intron 35.0%
CACAGTATGTAAGTTCCTTT+CGG - chr8_3:56545920-56545939 Msa1296830:intron 35.0%
! GTTTGACAAGTTCTGTTTTG+AGG - chr8_3:56546046-56546065 Msa1296830:intron 35.0%
TTGGGTTATGATGTACTATG+CGG + chr8_3:56546207-56546226 None:intergenic 35.0%
! TGCATTGCTGTAGTATTGAA+TGG - chr8_3:56546341-56546360 Msa1296830:intron 35.0%
! CAAGTGAAGAGATCAGATTT+TGG + chr8_3:56546482-56546501 None:intergenic 35.0%
!! TCATGCTTCTGGTTTAAGAT+GGG + chr8_3:56546510-56546529 None:intergenic 35.0%
!! TTCATGCTTCTGGTTTAAGA+TGG + chr8_3:56546511-56546530 None:intergenic 35.0%
! TTAAACCAGAAGCATGAAGT+GGG - chr8_3:56546513-56546532 Msa1296830:intron 35.0%
TTCCTATGTGTTTGTCTTGT+TGG - chr8_3:56546596-56546615 Msa1296830:intron 35.0%
AACCAACAAGACAAACACAT+AGG + chr8_3:56546601-56546620 None:intergenic 35.0%
! ATGTGTTTGTCTTGTTGGTT+AGG - chr8_3:56546601-56546620 Msa1296830:intron 35.0%
! TGTGTTTGTCTTGTTGGTTA+GGG - chr8_3:56546602-56546621 Msa1296830:intron 35.0%
GGTAAATTATTCATTGGTGG+TGG - chr8_3:56546814-56546833 Msa1296830:five_prime_UTR 35.0%
ATCTTATACCAACGTTAGCA+TGG + chr8_3:56546895-56546914 None:intergenic 35.0%
TATTGGAATTGTCGAGGGAA+TGG + chr8_3:56544816-56544835 None:intergenic 40.0%
TGTTTGGATCCCCTTGATTT+GGG - chr8_3:56545121-56545140 Msa1296830:intron 40.0%
AAAACTGAGCCCCAAATCAA+GGG + chr8_3:56545134-56545153 None:intergenic 40.0%
TAAAACTGAGCCCCAAATCA+AGG + chr8_3:56545135-56545154 None:intergenic 40.0%
TGCTCATAAGCCAAACATCA+TGG + chr8_3:56545344-56545363 None:intergenic 40.0%
!! GCTTATGAGCATTTTAACGG+AGG - chr8_3:56545353-56545372 Msa1296830:intron 40.0%
TTATGTTAGGGAGTTGGGTT+GGG - chr8_3:56545420-56545439 Msa1296830:intron 40.0%
! CTTCTTTGGTTGGCGTATTT+TGG - chr8_3:56545741-56545760 Msa1296830:intron 40.0%
AGCAACATACAGACTGTAGT+TGG - chr8_3:56546024-56546043 Msa1296830:intron 40.0%
GCATTATGCAGTTTACACGA+TGG + chr8_3:56546091-56546110 None:intergenic 40.0%
! TGATTGATGATTGCAGTGCA+AGG - chr8_3:56546388-56546407 Msa1296830:intron 40.0%
!! CATGCTTCTGGTTTAAGATG+GGG + chr8_3:56546509-56546528 None:intergenic 40.0%
! CTTAAACCAGAAGCATGAAG+TGG - chr8_3:56546512-56546531 Msa1296830:intron 40.0%
TTGGTTAGGGAAAGACACAA+GGG - chr8_3:56546615-56546634 Msa1296830:intron 40.0%
CAACAGTTTCTCACACTTGA+GGG + chr8_3:56546659-56546678 None:intergenic 40.0%
TCAACAGTTTCTCACACTTG+AGG + chr8_3:56546660-56546679 None:intergenic 40.0%
CTCCGAAAGCAACCTAAAAT+TGG - chr8_3:56546793-56546812 Msa1296830:five_prime_UTR 40.0%
CCAAATCACAGTTGCTTCAT+AGG + chr8_3:56546853-56546872 None:intergenic 40.0%
CCTATGAAGCAACTGTGATT+TGG - chr8_3:56546850-56546869 Msa1296830:five_prime_UTR 40.0%
!! AGCAACTGTGATTTGGTGTA+TGG - chr8_3:56546857-56546876 Msa1296830:five_prime_UTR 40.0%
TATTGGAATTGTCGAGGGAA+TGG + chr8_3:56544816-56544835 None:intergenic 40.0%
TGTTTGGATCCCCTTGATTT+GGG - chr8_3:56545121-56545140 Msa1296830:intron 40.0%
AAAACTGAGCCCCAAATCAA+GGG + chr8_3:56545134-56545153 None:intergenic 40.0%
TAAAACTGAGCCCCAAATCA+AGG + chr8_3:56545135-56545154 None:intergenic 40.0%
TGCTCATAAGCCAAACATCA+TGG + chr8_3:56545344-56545363 None:intergenic 40.0%
!! GCTTATGAGCATTTTAACGG+AGG - chr8_3:56545353-56545372 Msa1296830:intron 40.0%
TTATGTTAGGGAGTTGGGTT+GGG - chr8_3:56545420-56545439 Msa1296830:intron 40.0%
! CTTCTTTGGTTGGCGTATTT+TGG - chr8_3:56545741-56545760 Msa1296830:intron 40.0%
AGCAACATACAGACTGTAGT+TGG - chr8_3:56546024-56546043 Msa1296830:intron 40.0%
GCATTATGCAGTTTACACGA+TGG + chr8_3:56546091-56546110 None:intergenic 40.0%
! TGATTGATGATTGCAGTGCA+AGG - chr8_3:56546388-56546407 Msa1296830:intron 40.0%
!! CATGCTTCTGGTTTAAGATG+GGG + chr8_3:56546509-56546528 None:intergenic 40.0%
! CTTAAACCAGAAGCATGAAG+TGG - chr8_3:56546512-56546531 Msa1296830:intron 40.0%
TTGGTTAGGGAAAGACACAA+GGG - chr8_3:56546615-56546634 Msa1296830:intron 40.0%
CAACAGTTTCTCACACTTGA+GGG + chr8_3:56546659-56546678 None:intergenic 40.0%
TCAACAGTTTCTCACACTTG+AGG + chr8_3:56546660-56546679 None:intergenic 40.0%
CTCCGAAAGCAACCTAAAAT+TGG - chr8_3:56546793-56546812 Msa1296830:five_prime_UTR 40.0%
CCAAATCACAGTTGCTTCAT+AGG + chr8_3:56546853-56546872 None:intergenic 40.0%
CCTATGAAGCAACTGTGATT+TGG - chr8_3:56546850-56546869 Msa1296830:five_prime_UTR 40.0%
!! AGCAACTGTGATTTGGTGTA+TGG - chr8_3:56546857-56546876 Msa1296830:five_prime_UTR 40.0%
AAGCAGAAGAATGCTGGCAA+AGG - chr8_3:56544784-56544803 Msa1296830:three_prime_UTR 45.0%
CTGTTTGGATCCCCTTGATT+TGG - chr8_3:56545120-56545139 Msa1296830:intron 45.0%
! GTTTGGATCCCCTTGATTTG+GGG - chr8_3:56545122-56545141 Msa1296830:intron 45.0%
AAACTGAGCCCCAAATCAAG+GGG + chr8_3:56545133-56545152 None:intergenic 45.0%
GTTATGTTAGGGAGTTGGGT+TGG - chr8_3:56545419-56545438 Msa1296830:intron 45.0%
TGTAAGTTCCTTTCGGTGAC+TGG - chr8_3:56545927-56545946 Msa1296830:intron 45.0%
ATAAAGAGCCAGTCACCGAA+AGG + chr8_3:56545938-56545957 None:intergenic 45.0%
GTACTATGCGGTTTACACAG+TGG + chr8_3:56546195-56546214 None:intergenic 45.0%
CTTGCACTTCACTTCTGATG+TGG + chr8_3:56546438-56546457 None:intergenic 45.0%
CACATCAGAAGTGAAGTGCA+AGG - chr8_3:56546436-56546455 Msa1296830:intron 45.0%
!! GAGATCAGATTTTGGGTGTC+TGG + chr8_3:56546474-56546493 None:intergenic 45.0%
GTTGGTTAGGGAAAGACACA+AGG - chr8_3:56546614-56546633 Msa1296830:intron 45.0%
TGGTTAGGGAAAGACACAAG+GGG - chr8_3:56546616-56546635 Msa1296830:intron 45.0%
ACTGTTAGCCATGCTAACGT+TGG - chr8_3:56546884-56546903 Msa1296830:five_prime_UTR 45.0%
AAGCAGAAGAATGCTGGCAA+AGG - chr8_3:56544784-56544803 Msa1296830:three_prime_UTR 45.0%
CTGTTTGGATCCCCTTGATT+TGG - chr8_3:56545120-56545139 Msa1296830:intron 45.0%
! GTTTGGATCCCCTTGATTTG+GGG - chr8_3:56545122-56545141 Msa1296830:intron 45.0%
AAACTGAGCCCCAAATCAAG+GGG + chr8_3:56545133-56545152 None:intergenic 45.0%
GTTATGTTAGGGAGTTGGGT+TGG - chr8_3:56545419-56545438 Msa1296830:intron 45.0%
TGTAAGTTCCTTTCGGTGAC+TGG - chr8_3:56545927-56545946 Msa1296830:intron 45.0%
ATAAAGAGCCAGTCACCGAA+AGG + chr8_3:56545938-56545957 None:intergenic 45.0%
GTACTATGCGGTTTACACAG+TGG + chr8_3:56546195-56546214 None:intergenic 45.0%
CTTGCACTTCACTTCTGATG+TGG + chr8_3:56546438-56546457 None:intergenic 45.0%
CACATCAGAAGTGAAGTGCA+AGG - chr8_3:56546436-56546455 Msa1296830:intron 45.0%
!! GAGATCAGATTTTGGGTGTC+TGG + chr8_3:56546474-56546493 None:intergenic 45.0%
GTTGGTTAGGGAAAGACACA+AGG - chr8_3:56546614-56546633 Msa1296830:intron 45.0%
TGGTTAGGGAAAGACACAAG+GGG - chr8_3:56546616-56546635 Msa1296830:intron 45.0%
ACTGTTAGCCATGCTAACGT+TGG - chr8_3:56546884-56546903 Msa1296830:five_prime_UTR 45.0%
!!! TATGTTTTATAAATTTTTAA+GGG + chr8_3:56545790-56545809 None:intergenic 5.0%
!!! TATGTTTTATAAATTTTTAA+GGG + chr8_3:56545790-56545809 None:intergenic 5.0%
CAGCATTCTTCTGCTTCTCG+AGG + chr8_3:56544780-56544799 None:intergenic 50.0%
CTCGAGAAGCAGAAGAATGC+TGG - chr8_3:56544778-56544797 Msa1296830:three_prime_UTR 50.0%
TGCTTCCCACTTCATGCTTC+TGG + chr8_3:56546521-56546540 None:intergenic 50.0%
CAGCATTCTTCTGCTTCTCG+AGG + chr8_3:56544780-56544799 None:intergenic 50.0%
CTCGAGAAGCAGAAGAATGC+TGG - chr8_3:56544778-56544797 Msa1296830:three_prime_UTR 50.0%
TGCTTCCCACTTCATGCTTC+TGG + chr8_3:56546521-56546540 None:intergenic 50.0%
TTGAGGGTCTCTCTCAGCCA+TGG - chr8_3:56544711-56544730 Msa1296830:three_prime_UTR 55.0%
TGAGGGTCTCTCTCAGCCAT+GGG - chr8_3:56544712-56544731 Msa1296830:three_prime_UTR 55.0%
TCAGCCATGGGTGGAGGTAA+CGG - chr8_3:56544724-56544743 Msa1296830:three_prime_UTR 55.0%
TTGACCGTTACCTCCACCCA+TGG + chr8_3:56544731-56544750 None:intergenic 55.0%
AAGCTAAGATGGCTCGCGAG+AGG - chr8_3:56544752-56544771 Msa1296830:three_prime_UTR 55.0%
! GAAGTGCAAGGAGCATGCTG+AGG - chr8_3:56546448-56546467 Msa1296830:intron 55.0%
TTGAGGGTCTCTCTCAGCCA+TGG - chr8_3:56544711-56544730 Msa1296830:three_prime_UTR 55.0%
TGAGGGTCTCTCTCAGCCAT+GGG - chr8_3:56544712-56544731 Msa1296830:three_prime_UTR 55.0%
TCAGCCATGGGTGGAGGTAA+CGG - chr8_3:56544724-56544743 Msa1296830:three_prime_UTR 55.0%
TTGACCGTTACCTCCACCCA+TGG + chr8_3:56544731-56544750 None:intergenic 55.0%
AAGCTAAGATGGCTCGCGAG+AGG - chr8_3:56544752-56544771 Msa1296830:three_prime_UTR 55.0%
! GAAGTGCAAGGAGCATGCTG+AGG - chr8_3:56546448-56546467 Msa1296830:intron 55.0%
TCTCTCTCAGCCATGGGTGG+AGG - chr8_3:56544718-56544737 Msa1296830:three_prime_UTR 60.0%
TCTCTCTCAGCCATGGGTGG+AGG - chr8_3:56544718-56544737 Msa1296830:three_prime_UTR 60.0%
GGGTCTCTCTCAGCCATGGG+TGG - chr8_3:56544715-56544734 Msa1296830:three_prime_UTR 65.0%
GGGTCTCTCTCAGCCATGGG+TGG - chr8_3:56544715-56544734 Msa1296830:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 56544545 56546929 56544545 ID=Msa1296830;Name=Msa1296830
chr8_3 mRNA 56544545 56546929 56544545 ID=Msa1296830-mRNA-1;Parent=Msa1296830;Name=Msa1296830-mRNA-1;_AED=0.00;_eAED=0.00;_QI=185|1|1|1|1|1|3|400|80
chr8_3 exon 56544545 56545070 56544545 ID=Msa1296830-mRNA-1:exon:16217;Parent=Msa1296830-mRNA-1
chr8_3 exon 56546482 56546522 56546482 ID=Msa1296830-mRNA-1:exon:16216;Parent=Msa1296830-mRNA-1
chr8_3 exon 56546669 56546929 56546669 ID=Msa1296830-mRNA-1:exon:16215;Parent=Msa1296830-mRNA-1
chr8_3 five_prime_UTR 56546745 56546929 56546745 ID=Msa1296830-mRNA-1:five_prime_utr;Parent=Msa1296830-mRNA-1
chr8_3 CDS 56546669 56546744 56546669 ID=Msa1296830-mRNA-1:cds;Parent=Msa1296830-mRNA-1
chr8_3 CDS 56546482 56546522 56546482 ID=Msa1296830-mRNA-1:cds;Parent=Msa1296830-mRNA-1
chr8_3 CDS 56544945 56545070 56544945 ID=Msa1296830-mRNA-1:cds;Parent=Msa1296830-mRNA-1
chr8_3 three_prime_UTR 56544545 56544944 56544545 ID=Msa1296830-mRNA-1:three_prime_utr;Parent=Msa1296830-mRNA-1
Gene Sequence

>Msa1296830

ATGGGTGGAGGTAACGGTCAAAAAGCTAAGATGGCTCGCGAGAGGAACCTCGAGAAGCAGAAGAATGCTGGCAAAGGAAGCCAGCTTGAAAAAAACAAAAAAGCTATGTCAATCCAGTGCAAGGTGTGCATGCAAACATTTATCTGCACCACATCAGAAGTGAAGTGCAAGGAGCATGCTGAGGCCAGACACCCAAAATCTGATCTCTTCACTTGTTTTCCCCATCTTAAACCAGAAGCATGA

Protein sequence

>Msa1296830

MGGGNGQKAKMARERNLEKQKNAGKGSQLEKNKKAMSIQCKVCMQTFICTTSEVKCKEHAEARHPKSDLFTCFPHLKPEA*