AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0669720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0669720 MtrunA17_Chr4g0008801 98.788 165 2 0 1 165 1 165 2.75e-119 333
Msa0669720 MtrunA17_Chr7g0240701 70.701 157 46 0 1 157 1 157 1.95e-83 243
Msa0669720 MtrunA17_Chr4g0032261 65.409 159 55 0 1 159 1 159 4.91e-75 221
Msa0669720 MtrunA17_Chr5g0433951 55.758 165 73 0 1 165 1 165 5.60e-62 188
Msa0669720 MtrunA17_Chr2g0294421 47.500 160 84 0 1 160 1 160 1.36e-48 154
Msa0669720 MtrunA17_Chr5g0427291 37.654 162 85 5 9 157 12 170 1.37e-21 86.3
Msa0669720 MtrunA17_Chr1g0194801 33.742 163 90 6 3 157 4 156 1.00e-17 75.5
Msa0669720 MtrunA17_Chr1g0192651 32.716 162 99 4 5 164 9 162 6.66e-17 73.6
Msa0669720 MtrunA17_Chr4g0001641 48.387 62 32 0 100 161 8 69 1.13e-15 67.8
Msa0669720 MtrunA17_Chr6g0464761 73.171 41 11 0 95 135 12 52 1.15e-15 68.2
Msa0669720 MtrunA17_Chr1g0176321 30.120 166 95 4 9 157 7 168 3.38e-15 69.3
Msa0669720 MtrunA17_Chr1g0176311 29.375 160 98 3 9 157 26 181 2.10e-14 67.4
Msa0669720 MtrunA17_Chr2g0323291 26.994 163 109 4 2 157 22 181 1.87e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0669720 AT3G53990.1 75.472 159 39 0 1 159 1 159 2.43e-88 255
Msa0669720 AT3G03270.2 60.377 159 63 0 1 159 1 159 4.56e-63 191
Msa0669720 AT3G17020.1 50.000 154 76 1 5 157 7 160 1.12e-54 170
Msa0669720 AT3G53990.2 74.490 98 25 0 1 98 1 98 2.08e-47 150
Msa0669720 AT3G03270.1 57.037 135 58 0 1 135 1 135 7.60e-47 151
Msa0669720 AT3G17020.2 47.253 91 47 1 5 94 7 97 6.84e-25 93.2
Msa0669720 AT1G09740.2 32.530 166 96 3 9 164 12 171 4.20e-20 82.4
Msa0669720 AT1G09740.1 32.530 166 96 3 9 164 12 171 4.20e-20 82.4
Msa0669720 AT3G62550.1 33.939 165 92 4 3 160 5 159 1.59e-18 78.2
Msa0669720 AT3G58450.1 30.682 176 93 5 9 165 34 199 6.65e-18 77.4
Msa0669720 AT3G58450.2 30.233 172 92 5 9 165 34 192 2.08e-17 75.9
Msa0669720 AT1G68300.1 31.169 154 99 3 5 157 10 157 1.60e-15 70.1
Msa0669720 AT3G11930.2 30.247 162 95 3 9 157 37 193 2.33e-15 70.5
Msa0669720 AT3G11930.1 30.435 161 95 3 9 157 37 192 6.86e-15 69.3
Msa0669720 AT3G11930.4 30.061 163 95 3 9 157 37 194 1.00e-14 68.9
Msa0669720 AT1G11360.2 30.435 161 99 6 5 157 38 193 3.23e-13 65.5
Msa0669720 AT1G11360.1 30.435 161 99 6 5 157 38 193 3.23e-13 65.5
Msa0669720 AT1G11360.4 30.435 161 99 6 5 157 38 193 3.23e-13 65.5
Msa0669720 AT1G11360.3 30.435 161 99 6 5 157 38 193 3.23e-13 65.5
Msa0669720 AT5G54430.2 31.333 150 86 5 5 144 48 190 4.80e-11 59.7
Msa0669720 AT5G54430.5 31.333 150 86 5 5 144 48 190 4.80e-11 59.7
Msa0669720 AT5G54430.1 31.333 150 86 5 5 144 48 190 4.90e-11 59.7
Msa0669720 AT5G54430.4 31.333 150 86 5 5 144 48 190 4.90e-11 59.7
Msa0669720 AT5G54430.3 31.333 150 86 5 5 144 48 190 5.54e-11 59.7
Msa0669720 AT5G54430.6 31.333 150 86 5 5 144 48 190 5.54e-11 59.7

Find 43 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGTTTCTTGCATTGTATT+TGG 0.126929 4_4:-11590390 Msa0669720:three_prime_UTR
ATTGGATAAGTAATAAATTT+TGG 0.148958 4_4:+11590256 None:intergenic
CTGTTTCTTGCATTGTATTT+GGG 0.239381 4_4:-11590389 Msa0669720:three_prime_UTR
AGATGAATAGCATTTAAATT+TGG 0.260690 4_4:-11590420 Msa0669720:three_prime_UTR
AGCATGTGAAACTAATAAAT+TGG 0.262668 4_4:+11590238 None:intergenic
GATTATAAATTCCGACTATC+TGG 0.299506 4_4:-11590333 Msa0669720:three_prime_UTR
CAGAGCATTCTTGCTGCTCT+TGG 0.307367 4_4:+11592677 None:intergenic
GAAGCTGGATTCTCTTGTTA+TGG 0.310746 4_4:-11591745 Msa0669720:CDS
TAGAACTATTGGTGTGGCTT+TGG 0.330939 4_4:-11592706 Msa0669720:CDS
TATTGTTACAAAAGTGTATT+GGG 0.331126 4_4:-11591808 Msa0669720:CDS
AAGCTGGATTCTCTTGTTAT+GGG 0.360643 4_4:-11591744 Msa0669720:CDS
GCAGCAAGAATGCTCTGAAA+TGG 0.370068 4_4:-11592671 Msa0669720:CDS
TCTCATGAACAGGATATTAC+TGG 0.374010 4_4:-11590526 Msa0669720:intron
ATTCTCTTGTTATGGGTAGC+AGG 0.383547 4_4:-11591737 Msa0669720:CDS
CCATACTTCTTCATTATCTC+TGG 0.389368 4_4:+11591996 None:intergenic
ATGGCAAAAGATAGAACTAT+TGG 0.392250 4_4:-11592717 Msa0669720:CDS
GTACTTACGAGAACCATCTT+TGG 0.412789 4_4:+11592557 None:intergenic
ATGAAGCTCGTAATCAGTTA+TGG 0.420885 4_4:-11592581 Msa0669720:CDS
TTCTCTTGTTATGGGTAGCA+GGG 0.424515 4_4:-11591736 Msa0669720:CDS
ATATTGTTACAAAAGTGTAT+TGG 0.434652 4_4:-11591809 Msa0669720:CDS
ATTGTGCCATAAATTATTCA+AGG 0.435758 4_4:-11590183 Msa0669720:three_prime_UTR
CCAGAGATAATGAAGAAGTA+TGG 0.442632 4_4:-11591996 Msa0669720:CDS
TGGTGTTCAGATTGATATTG+AGG 0.444872 4_4:-11591976 Msa0669720:CDS
CAGCAAGAATGCTCTGAAAT+GGG 0.466495 4_4:-11592670 Msa0669720:CDS
TGAAGCTCGTAATCAGTTAT+GGG 0.466658 4_4:-11592580 Msa0669720:CDS
TGATGCAAGAGAGAAACTTA+TGG 0.472999 4_4:-11591784 Msa0669720:CDS
TGCTGTTGAAGATCTGAAGC+TGG 0.501707 4_4:-11591760 Msa0669720:CDS
GGTTCTCTGAATTCTTTCAA+AGG 0.511562 4_4:+11592017 None:intergenic
CTGAGAAAAGAAGAATAAGA+AGG 0.512711 4_4:+11592773 None:intergenic
AGTCACAGGGCAAGGAGCAT+TGG 0.516295 4_4:+11590479 None:intergenic
TGAATAACAATCTATGTGTC+TGG 0.522408 4_4:+11590207 None:intergenic
TTATCCTTGACAATAGTCAC+AGG 0.547714 4_4:+11590465 None:intergenic
GGGGTCTCAGCACAATTCAA+AGG 0.550843 4_4:-11591716 Msa0669720:intron
CTCATGAACAGGATATTACT+GGG 0.555261 4_4:-11590525 Msa0669720:intron
TTGACAATAGTCACAGGGCA+AGG 0.568600 4_4:+11590471 None:intergenic
AATCAGTTATGGGCCAAAGA+TGG 0.569005 4_4:-11592570 Msa0669720:CDS
AATAAAGTTAACCAGATAGT+CGG 0.578098 4_4:+11590322 None:intergenic
TCTCTTGTTATGGGTAGCAG+GGG 0.589338 4_4:-11591735 Msa0669720:CDS
CTTGAGAATTTAGCTGACAA+AGG 0.596595 4_4:-11592645 Msa0669720:CDS
TTGCCCTGTGACTATTGTCA+AGG 0.603225 4_4:-11590469 Msa0669720:CDS
ATTGTTACAAAAGTGTATTG+GGG 0.627971 4_4:-11591807 Msa0669720:CDS
AAAAGATAGAACTATTGGTG+TGG 0.655375 4_4:-11592712 Msa0669720:CDS
TATCCTTGACAATAGTCACA+GGG 0.701905 4_4:+11590466 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTGATTATTGATTTTT+AGG - chr4_4:11591080-11591099 Msa0669720:intron 10.0%
!! AAAAATTAACGAAAAATGAA+TGG + chr4_4:11590383-11590402 None:intergenic 15.0%
!! TCAAATTAACAATATAAGAT+CGG + chr4_4:11590438-11590457 None:intergenic 15.0%
!!! AACATACTTTATTTATCTTT+TGG - chr4_4:11590579-11590598 Msa0669720:intron 15.0%
!! TTTGATTCATACATTTATAT+CGG - chr4_4:11590699-11590718 Msa0669720:intron 15.0%
!!! AAATATTTTGATGTATTCAT+AGG + chr4_4:11592327-11592346 None:intergenic 15.0%
!!! ATTGGATAAGTAATAAATTT+TGG + chr4_4:11592662-11592681 None:intergenic 15.0%
!! AAAAATCCTTGAATAATTTA+TGG + chr4_4:11592741-11592760 None:intergenic 15.0%
!!! GATCAAACTTTATTTATCTT+TGG - chr4_4:11590490-11590509 Msa0669720:CDS 20.0%
!!! GACTCTAATAATCTAAAATT+CGG + chr4_4:11590517-11590536 None:intergenic 20.0%
!!! ATATTGTTACAAAAGTGTAT+TGG - chr4_4:11591106-11591125 Msa0669720:intron 20.0%
!!! TATTGTTACAAAAGTGTATT+GGG - chr4_4:11591107-11591126 Msa0669720:intron 20.0%
!! AACACAAGATTAAGAAATTA+GGG + chr4_4:11591235-11591254 None:intergenic 20.0%
!! AAACACAAGATTAAGAAATT+AGG + chr4_4:11591236-11591255 None:intergenic 20.0%
!!! AATCTTGTGTTTAATGTTTT+TGG - chr4_4:11591244-11591263 Msa0669720:intron 20.0%
!!! ATCTTGTGTTTAATGTTTTT+GGG - chr4_4:11591245-11591264 Msa0669720:intron 20.0%
!! AGAAAATTAATTAGATCATG+TGG - chr4_4:11591304-11591323 Msa0669720:intron 20.0%
!! GAAAATTAATTAGATCATGT+GGG - chr4_4:11591305-11591324 Msa0669720:intron 20.0%
!! AAAATTAATTAGATCATGTG+GGG - chr4_4:11591306-11591325 Msa0669720:intron 20.0%
!!! TTTTAGTGACATGATATAAT+TGG - chr4_4:11591419-11591438 Msa0669720:intron 20.0%
!!! TTTGTAGCTTTACAAAATAA+GGG - chr4_4:11591562-11591581 Msa0669720:intron 20.0%
!! ATTTAGATAGAATTGAGATT+GGG + chr4_4:11591862-11591881 None:intergenic 20.0%
!! TATTTAGATAGAATTGAGAT+TGG + chr4_4:11591863-11591882 None:intergenic 20.0%
!!! TTCTCAAATCAATGTTATTT+TGG - chr4_4:11591919-11591938 Msa0669720:intron 20.0%
!! AGATGAATAGCATTTAAATT+TGG - chr4_4:11592495-11592514 Msa0669720:intron 20.0%
!!! TCTGCATTTTAATTTAGACA+AGG - chr4_4:11591026-11591045 Msa0669720:intron 25.0%
!! ATTGTTACAAAAGTGTATTG+GGG - chr4_4:11591108-11591127 Msa0669720:intron 25.0%
! AATTCTATAAACTTAAGCTC+TGG + chr4_4:11591365-11591384 None:intergenic 25.0%
!! GTTTGTAGCTTTACAAAATA+AGG - chr4_4:11591561-11591580 Msa0669720:intron 25.0%
! CTACTAGAAACTACAATATA+CGG + chr4_4:11591756-11591775 None:intergenic 25.0%
! ACTATAATCAATTATAGGAC+TGG + chr4_4:11591839-11591858 None:intergenic 25.0%
! TTGGGACTATAATCAATTAT+AGG + chr4_4:11591844-11591863 None:intergenic 25.0%
!!! AATATCTATCTAAGTACTGA+AGG - chr4_4:11592264-11592283 Msa0669720:intron 25.0%
!!! CATCAAAATATTTGTTGTGA+TGG - chr4_4:11592334-11592353 Msa0669720:intron 25.0%
! AATAAAGTTAACCAGATAGT+CGG + chr4_4:11592596-11592615 None:intergenic 25.0%
! AGCATGTGAAACTAATAAAT+TGG + chr4_4:11592680-11592699 None:intergenic 25.0%
! ATTGTGCCATAAATTATTCA+AGG - chr4_4:11592732-11592751 Msa0669720:exon 25.0%
CTGAGAAAAGAAGAATAAGA+AGG + chr4_4:11590145-11590164 None:intergenic 30.0%
ACATCACTCACAAACAAAAA+TGG - chr4_4:11590179-11590198 Msa0669720:three_prime_UTR 30.0%
ATGGCAAAAGATAGAACTAT+TGG - chr4_4:11590198-11590217 Msa0669720:three_prime_UTR 30.0%
AAAAGATAGAACTATTGGTG+TGG - chr4_4:11590203-11590222 Msa0669720:three_prime_UTR 30.0%
!!! AATTAGACTGGATTTTGACT+CGG - chr4_4:11590545-11590564 Msa0669720:intron 30.0%
!! TTCGATTTTGATACGATATC+TGG - chr4_4:11590732-11590751 Msa0669720:intron 30.0%
!!! ACATGACAGGATATTGATTT+TGG - chr4_4:11590805-11590824 Msa0669720:intron 30.0%
!!! CAGGATATTGATTTTGGTTT+TGG - chr4_4:11590811-11590830 Msa0669720:intron 30.0%
!!! ATTTGCTTGACACTTTTTCA+AGG - chr4_4:11590968-11590987 Msa0669720:intron 30.0%
ATAGTGAGATCGAATAATCA+CGG + chr4_4:11591595-11591614 None:intergenic 30.0%
ACTATACAAACATGTACGTT+TGG - chr4_4:11591610-11591629 Msa0669720:intron 30.0%
! CCAACGTAAATGTGATTTTT+GGG + chr4_4:11591644-11591663 None:intergenic 30.0%
! ACCAACGTAAATGTGATTTT+TGG + chr4_4:11591645-11591664 None:intergenic 30.0%
! CAAATCAAAATAACTTGTGC+CGG + chr4_4:11591679-11591698 None:intergenic 30.0%
! TGATTTTATGTCACTGCAAA+AGG + chr4_4:11591898-11591917 None:intergenic 30.0%
ACTTTGTTGAATTGAAAGTG+TGG - chr4_4:11591952-11591971 Msa0669720:CDS 30.0%
GATTCTTGTAAAACTGATCT+TGG + chr4_4:11592115-11592134 None:intergenic 30.0%
! TATTTGACGATTTAGTTCAG+CGG + chr4_4:11592164-11592183 None:intergenic 30.0%
! GTCAAATAATCTGATGATGA+GGG - chr4_4:11592176-11592195 Msa0669720:intron 30.0%
GATTAAGATCTTGTAGTGAA+AGG + chr4_4:11592305-11592324 None:intergenic 30.0%
AAAATTTGAGTCTCATGAAC+AGG - chr4_4:11592379-11592398 Msa0669720:intron 30.0%
! TCTGTTTCTTGCATTGTATT+TGG - chr4_4:11592525-11592544 Msa0669720:intron 30.0%
! CTGTTTCTTGCATTGTATTT+GGG - chr4_4:11592526-11592545 Msa0669720:intron 30.0%
GATTATAAATTCCGACTATC+TGG - chr4_4:11592582-11592601 Msa0669720:CDS 30.0%
TGAATAACAATCTATGTGTC+TGG + chr4_4:11592711-11592730 None:intergenic 30.0%
CTTGAGAATTTAGCTGACAA+AGG - chr4_4:11590270-11590289 Msa0669720:three_prime_UTR 35.0%
ATGAAGCTCGTAATCAGTTA+TGG - chr4_4:11590334-11590353 Msa0669720:three_prime_UTR 35.0%
TGAAGCTCGTAATCAGTTAT+GGG - chr4_4:11590335-11590354 Msa0669720:three_prime_UTR 35.0%
!! TTCTTTTTGTTGTCACTCTC+CGG + chr4_4:11590642-11590661 None:intergenic 35.0%
ATAATCAAGAGAACATGCAC+TGG + chr4_4:11590773-11590792 None:intergenic 35.0%
GGTTCTCTGAATTCTTTCAA+AGG + chr4_4:11590901-11590920 None:intergenic 35.0%
CCATACTTCTTCATTATCTC+TGG + chr4_4:11590922-11590941 None:intergenic 35.0%
CCAGAGATAATGAAGAAGTA+TGG - chr4_4:11590919-11590938 Msa0669720:intron 35.0%
TGGTGTTCAGATTGATATTG+AGG - chr4_4:11590939-11590958 Msa0669720:intron 35.0%
!!! CACTTTTTCAAGGCAAAAAG+AGG - chr4_4:11590978-11590997 Msa0669720:intron 35.0%
TGATGCAAGAGAGAAACTTA+TGG - chr4_4:11591131-11591150 Msa0669720:intron 35.0%
! AAGCTGGATTCTCTTGTTAT+GGG - chr4_4:11591171-11591190 Msa0669720:intron 35.0%
!!! GTTTGTTTTGGAGTGTAAGT+TGG - chr4_4:11591328-11591347 Msa0669720:intron 35.0%
CGGTGAGATTGACAAAATTA+CGG - chr4_4:11591473-11591492 Msa0669720:intron 35.0%
TGAGATTGACAAAATTACGG+TGG - chr4_4:11591476-11591495 Msa0669720:intron 35.0%
GAGATTGACAAAATTACGGT+GGG - chr4_4:11591477-11591496 Msa0669720:intron 35.0%
! GTAGCTTTACAAAATAAGGG+TGG - chr4_4:11591565-11591584 Msa0669720:intron 35.0%
!!! TAAATGTGATTTTTGGGTGG+TGG + chr4_4:11591638-11591657 None:intergenic 35.0%
!! ACGTAAATGTGATTTTTGGG+TGG + chr4_4:11591641-11591660 None:intergenic 35.0%
CCCAAAAATCACATTTACGT+TGG - chr4_4:11591641-11591660 Msa0669720:intron 35.0%
!!! CGGCACAAGTTATTTTGATT+TGG - chr4_4:11591677-11591696 Msa0669720:intron 35.0%
TTCATAAGTTCACAGCAGAA+TGG + chr4_4:11591732-11591751 None:intergenic 35.0%
!! TGAATTGAAAGTGTGGCTTT+TGG - chr4_4:11591959-11591978 Msa0669720:CDS 35.0%
! CGTCAAATAATCTGATGATG+AGG - chr4_4:11592175-11592194 Msa0669720:intron 35.0%
!! CATATAGAAGAGCGTCTATT+TGG - chr4_4:11592215-11592234 Msa0669720:intron 35.0%
TCTCATGAACAGGATATTAC+TGG - chr4_4:11592389-11592408 Msa0669720:intron 35.0%
CTCATGAACAGGATATTACT+GGG - chr4_4:11592390-11592409 Msa0669720:intron 35.0%
TATCCTTGACAATAGTCACA+GGG + chr4_4:11592452-11592471 None:intergenic 35.0%
TTATCCTTGACAATAGTCAC+AGG + chr4_4:11592453-11592472 None:intergenic 35.0%
TAGAACTATTGGTGTGGCTT+TGG - chr4_4:11590209-11590228 Msa0669720:three_prime_UTR 40.0%
!! CAGCAAGAATGCTCTGAAAT+GGG - chr4_4:11590245-11590264 Msa0669720:three_prime_UTR 40.0%
AATCAGTTATGGGCCAAAGA+TGG - chr4_4:11590345-11590364 Msa0669720:three_prime_UTR 40.0%
GTACTTACGAGAACCATCTT+TGG + chr4_4:11590361-11590380 None:intergenic 40.0%
AGTCTCGAGTCTAATTAGAC+TGG - chr4_4:11590533-11590552 Msa0669720:intron 40.0%
TCAGTATGACATGACATGAC+AGG - chr4_4:11590792-11590811 Msa0669720:intron 40.0%
GAAGCTGGATTCTCTTGTTA+TGG - chr4_4:11591170-11591189 Msa0669720:intron 40.0%
! ATTCTCTTGTTATGGGTAGC+AGG - chr4_4:11591178-11591197 Msa0669720:intron 40.0%
! TTCTCTTGTTATGGGTAGCA+GGG - chr4_4:11591179-11591198 Msa0669720:intron 40.0%
!! AGATCATGTGGGGTTTGTTT+TGG - chr4_4:11591316-11591335 Msa0669720:intron 40.0%
! ACATTTACGTTGGTGAAACG+TGG - chr4_4:11591651-11591670 Msa0669720:intron 40.0%
GTTTGTTTCCACTGCAGAAT+GGG + chr4_4:11591793-11591812 None:intergenic 40.0%
TGTTTGTTTCCACTGCAGAA+TGG + chr4_4:11591794-11591813 None:intergenic 40.0%
AGACGCTCTTCTATATGCAT+CGG + chr4_4:11592212-11592231 None:intergenic 40.0%
!! GCAGCAAGAATGCTCTGAAA+TGG - chr4_4:11590244-11590263 Msa0669720:three_prime_UTR 45.0%
! TTTATCTTTTGGCCGAGCTC+TGG - chr4_4:11590590-11590609 Msa0669720:intron 45.0%
TCTCCGGTTCTTAGAGAAAC+CGG + chr4_4:11590626-11590645 None:intergenic 45.0%
TACGATATCTGGCCAAACTC+TGG - chr4_4:11590743-11590762 Msa0669720:intron 45.0%
! TGCACTGGTAATCCAGAGTT+TGG + chr4_4:11590758-11590777 None:intergenic 45.0%
! TGCTGTTGAAGATCTGAAGC+TGG - chr4_4:11591155-11591174 Msa0669720:intron 45.0%
! TCTCTTGTTATGGGTAGCAG+GGG - chr4_4:11591180-11591199 Msa0669720:intron 45.0%
ATGCTCAAGTCGCTCATGTT+TGG - chr4_4:11591445-11591464 Msa0669720:intron 45.0%
ACAATGATAGATGCGCGTCT+AGG - chr4_4:11591705-11591724 Msa0669720:intron 45.0%
CACTGCAGAATGGGTATAAG+AGG + chr4_4:11591784-11591803 None:intergenic 45.0%
CTCTTATACCCATTCTGCAG+TGG - chr4_4:11591782-11591801 Msa0669720:CDS 45.0%
TTGACAATAGTCACAGGGCA+AGG + chr4_4:11592447-11592466 None:intergenic 45.0%
TTGCCCTGTGACTATTGTCA+AGG - chr4_4:11592446-11592465 Msa0669720:intron 45.0%
!!! TTAATTTATGTTTTTTTTTT+TGG - chr4_4:11590859-11590878 Msa0669720:intron 5.0%
! CAGAGCATTCTTGCTGCTCT+TGG + chr4_4:11590241-11590260 None:intergenic 50.0%
GGTCCTGATAATCCAGAGCT+CGG + chr4_4:11590605-11590624 None:intergenic 50.0%
!! GAGCTCTGGATTATCAGGAC+CGG - chr4_4:11590604-11590623 Msa0669720:intron 50.0%
! GGACCGGTTTCTCTAAGAAC+CGG - chr4_4:11590620-11590639 Msa0669720:intron 50.0%
GGGGTCTCAGCACAATTCAA+AGG - chr4_4:11591199-11591218 Msa0669720:intron 50.0%
GTCGCTCATGTTTGGATGAG+CGG - chr4_4:11591453-11591472 Msa0669720:intron 50.0%
!!! ACGGTGGGTTAGCACGATTT+TGG - chr4_4:11591492-11591511 Msa0669720:intron 50.0%
! ACGTTGGTGAAACGTGGTTC+CGG - chr4_4:11591657-11591676 Msa0669720:intron 50.0%
!! TGGCCGAGCTCTGGATTATC+AGG - chr4_4:11590599-11590618 Msa0669720:intron 55.0%
! AGTCACAGGGCAAGGAGCAT+TGG + chr4_4:11592439-11592458 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 11590124 11592813 11590124 ID=Msa0669720;Name=Msa0669720
chr4_4 mRNA 11590124 11592813 11590124 ID=Msa0669720-mRNA-1;Parent=Msa0669720;Name=Msa0669720-mRNA-1;_AED=0.07;_eAED=0.07;_QI=74|1|1|1|1|1|4|319|165
chr4_4 exon 11590124 11590536 11590124 ID=Msa0669720-mRNA-1:exon:3540;Parent=Msa0669720-mRNA-1
chr4_4 exon 11591717 11591835 11591717 ID=Msa0669720-mRNA-1:exon:3539;Parent=Msa0669720-mRNA-1
chr4_4 exon 11591938 11592047 11591938 ID=Msa0669720-mRNA-1:exon:3538;Parent=Msa0669720-mRNA-1
chr4_4 exon 11592565 11592813 11592565 ID=Msa0669720-mRNA-1:exon:3537;Parent=Msa0669720-mRNA-1
chr4_4 five_prime_UTR 11592740 11592813 11592740 ID=Msa0669720-mRNA-1:five_prime_utr;Parent=Msa0669720-mRNA-1
chr4_4 CDS 11592565 11592739 11592565 ID=Msa0669720-mRNA-1:cds;Parent=Msa0669720-mRNA-1
chr4_4 CDS 11591938 11592047 11591938 ID=Msa0669720-mRNA-1:cds;Parent=Msa0669720-mRNA-1
chr4_4 CDS 11591717 11591835 11591717 ID=Msa0669720-mRNA-1:cds;Parent=Msa0669720-mRNA-1
chr4_4 CDS 11590443 11590536 11590443 ID=Msa0669720-mRNA-1:cds;Parent=Msa0669720-mRNA-1
chr4_4 three_prime_UTR 11590124 11590442 11590124 ID=Msa0669720-mRNA-1:three_prime_utr;Parent=Msa0669720-mRNA-1
Gene Sequence

>Msa0669720

ATGGCAAAAGATAGAACTATTGGTGTGGCTTTGGATTTCTCCAAGAGCAGCAAGAATGCTCTGAAATGGGCACTTGAGAATTTAGCTGACAAAGGTGACAACATTTACATCATTCACATCAGTCATGATTCTCTTGATGAAGCTCGTAATCAGTTATGGGCCAAAGATGGTTCTCCTCTTATTCCTTTGAAAGAATTCAGAGAACCAGAGATAATGAAGAAGTATGGTGTTCAGATTGATATTGAGGTTCTTGATTTGCTTGACACTTTTTCAAGGCAAAAAGAGGTGAATATTGTTACAAAAGTGTATTGGGGTGATGCAAGAGAGAAACTTATGGATGCTGTTGAAGATCTGAAGCTGGATTCTCTTGTTATGGGTAGCAGGGGTCTCAGCACAATTCAAAGGATATTACTGGGAAGTGTAAGCAATTTTGTGATGACCAATGCTCCTTGCCCTGTGACTATTGTCAAGGATAATAGCAGCAGCAGCAGCAAGTAA

Protein sequence

>Msa0669720

MAKDRTIGVALDFSKSSKNALKWALENLADKGDNIYIIHISHDSLDEARNQLWAKDGSPLIPLKEFREPEIMKKYGVQIDIEVLDLLDTFSRQKEVNIVTKVYWGDAREKLMDAVEDLKLDSLVMGSRGLSTIQRILLGSVSNFVMTNAPCPVTIVKDNSSSSSK*