AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0183850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0183850 MtrunA17_Chr1g0210571 98.489 331 5 0 1 331 1 331 0.0 671
Msa0183850 MtrunA17_Chr1g0171071 59.483 348 125 2 1 332 1 348 6.67e-151 427
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0183850 AT3G54290.1 48.603 358 139 5 1 327 1 344 2.64e-112 330

Find 139 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAAACGACACCGTAATT+TGG 0.148058 1_4:+72825378 None:intergenic
GGAGGCGCGGTTTCCGAATT+TGG 0.161837 1_4:-72824972 Msa0183850:CDS
CATCAAATCTGTTGGTGTTT+TGG 0.169536 1_4:-72823924 Msa0183850:CDS
GGAGAAGGTGTTGCGGTTTA+TGG 0.195686 1_4:-72824993 Msa0183850:CDS
TATCCAACCGTCCGTTTATA+CGG 0.262754 1_4:-72825181 Msa0183850:CDS
CCCTTTACCTCGTGATAGTT+TGG 0.283681 1_4:-72823006 Msa0183850:three_prime_UTR
TACAAGGCCTCTTGAAAATC+AGG 0.294709 1_4:+72823890 None:intergenic
TTGGTGACGGTGGGCGGCGG+TGG 0.301202 1_4:-72824953 Msa0183850:CDS
CGGCGGTGGTGGTGTGGAGG+AGG 0.308518 1_4:-72824939 Msa0183850:CDS
ACTTCACTGCAACACTCTAA+TGG 0.311284 1_4:-72825269 Msa0183850:exon
GTAATGTACATCCAAGTATA+TGG 0.327079 1_4:-72822956 Msa0183850:three_prime_UTR
TCAAAAGTACATGAGTTTAC+TGG 0.328780 1_4:-72822921 Msa0183850:three_prime_UTR
TCTTTCACTTAACTATCATT+TGG 0.331758 1_4:+72823251 None:intergenic
CCGCCCACCGTCACCAAATT+CGG 0.342200 1_4:+72824959 None:intergenic
TCTTCACAAATCCGTTTCAT+TGG 0.345315 1_4:-72825116 Msa0183850:CDS
GAAGCACCCAGCACATGATA+TGG 0.352920 1_4:-72823129 Msa0183850:three_prime_UTR
TGCTCGCCTCAAGTTATTGC+TGG 0.359822 1_4:-72823858 Msa0183850:intron
GGTGGGCGGCGGTGGTGGTG+TGG 0.365661 1_4:-72824945 Msa0183850:CDS
TGTGAAACGTGGAGGGAAAA+AGG 0.368154 1_4:-72824825 Msa0183850:CDS
TTAAAGTGAGAGAAGAGATT+TGG 0.372753 1_4:+72825426 None:intergenic
AGTGGATTTACTTCCACTAA+TGG 0.378349 1_4:-72823455 Msa0183850:CDS
GTGTTGCAGTGAAGTTGTTT+TGG 0.381585 1_4:+72825277 None:intergenic
GTGACGGTGGGCGGCGGTGG+TGG 0.381919 1_4:-72824950 Msa0183850:CDS
ACCTCGTGATAGTTTGGATA+AGG 0.386961 1_4:-72823000 Msa0183850:three_prime_UTR
AACTCCAATGCCTCCATTAG+TGG 0.389254 1_4:+72823442 None:intergenic
CTTCACTGCAACACTCTAAT+GGG 0.389648 1_4:-72825268 Msa0183850:exon
CCAAACTATCACGAGGTAAA+GGG 0.394335 1_4:+72823006 None:intergenic
GGGCGGCGGTGGTGGTGTGG+AGG 0.415226 1_4:-72824942 Msa0183850:CDS
GAAATTCGCGAGAAGCTATT+CGG 0.416829 1_4:-72824762 Msa0183850:CDS
GTTTGTTATATTGCATGTGT+TGG 0.417783 1_4:-72822899 Msa0183850:three_prime_UTR
GTTGGATCCGAAAGTGTTAC+GGG 0.417848 1_4:-72825022 Msa0183850:CDS
CCGCGAACCCGTAACACTTT+CGG 0.423723 1_4:+72825015 None:intergenic
TCCAAACTATCACGAGGTAA+AGG 0.431302 1_4:+72823005 None:intergenic
GTGAGAGAAGAGATTTGGTT+TGG 0.436332 1_4:+72825431 None:intergenic
AATTTCCTTATCTCCATCTT+CGG 0.441143 1_4:+72824779 None:intergenic
GGGATATCATTTGGAAGAGT+AGG 0.443139 1_4:-72823050 Msa0183850:three_prime_UTR
AGTTGGATCCGAAAGTGTTA+CGG 0.443569 1_4:-72825023 Msa0183850:CDS
TGAAGAGTGACGTGTCCATC+CGG 0.447849 1_4:+72825046 None:intergenic
GATAGTTAAGTGAAAGATGC+AGG 0.450570 1_4:-72823245 Msa0183850:exon
ATTGGAGATTAGTGAATGAA+TGG 0.454384 1_4:+72825305 None:intergenic
CCGAATTTGGTGACGGTGGG+CGG 0.455678 1_4:-72824959 Msa0183850:CDS
GGAGTTGTTGGAGGTTATGA+TGG 0.459395 1_4:-72824741 Msa0183850:CDS
TGTGAAGTCGGAGAAATTAA+CGG 0.460050 1_4:-72825236 Msa0183850:CDS
GAAACTCTACGAGATCATTT+CGG 0.461175 1_4:-72825076 Msa0183850:CDS
GAAATGATCTCGTAGAGTTT+CGG 0.461770 1_4:+72825078 None:intergenic
ACTTCCACTAATGGAGGCAT+TGG 0.465464 1_4:-72823446 Msa0183850:CDS
TGTGGAGGAGGGAAAATTGC+CGG 0.467382 1_4:-72824927 Msa0183850:CDS
TAAATCTGGGTCCATATACT+TGG 0.467765 1_4:+72822945 None:intergenic
TTCTGTGGGGAGTCCGAAGA+TGG 0.470996 1_4:-72824792 Msa0183850:CDS
CGATCAGCACGATCAAAGAA+AGG 0.475367 1_4:+72824686 None:intergenic
AGGGACCTACCTCTCATGAA+TGG 0.475641 1_4:-72823959 Msa0183850:CDS
TCTTGTTGAACATGTTAGCC+TGG 0.476391 1_4:-72823101 Msa0183850:three_prime_UTR
ACATTTCAAGGAAGAGGAAG+TGG 0.480483 1_4:-72823473 Msa0183850:CDS
ATCACGAGGTAAAGGGGAAA+AGG 0.480917 1_4:+72823013 None:intergenic
ATAGTTAGTAGTTGATGTAA+AGG 0.483860 1_4:+72825338 None:intergenic
GAGAAGCTATTCGGAGTTGT+TGG 0.486257 1_4:-72824753 Msa0183850:CDS
TTGGTTTGGTGTTAGCTTCG+AGG 0.488775 1_4:+72825445 None:intergenic
ATGTTGATTTATGCGTGGTT+TGG 0.490192 1_4:+72825492 None:intergenic
TTTGTTATATTGCATGTGTT+GGG 0.494290 1_4:-72822898 Msa0183850:three_prime_UTR
CAAACAACATTTCAAGGAAG+AGG 0.495491 1_4:-72823479 Msa0183850:CDS
TTCTCTCACTTTAACACGGT+CGG 0.496702 1_4:-72825417 Msa0183850:five_prime_UTR
CTTCGAGGTCAAGCTCTGAA+TGG 0.505137 1_4:+72825460 None:intergenic
AATTTGGTGACGGTGGGCGG+CGG 0.505401 1_4:-72824956 Msa0183850:CDS
ACTCTCTAAAGCTGCAAAAG+AGG 0.507660 1_4:-72823990 Msa0183850:CDS
TACCTATGTCTACCAGGTAG+TGG 0.509294 1_4:-72822845 Msa0183850:three_prime_UTR
GGGACCTACCTCTCATGAAT+GGG 0.511931 1_4:-72823958 Msa0183850:CDS
CCGAAAGTGTTACGGGTTCG+CGG 0.512674 1_4:-72825015 Msa0183850:CDS
GAATGTCCCATATCATGTGC+TGG 0.513454 1_4:+72823122 None:intergenic
TTTCCGAATTTGGTGACGGT+GGG 0.517929 1_4:-72824962 Msa0183850:CDS
GCAGTGCAAACAACATTTCA+AGG 0.524181 1_4:-72823485 Msa0183850:CDS
CTCGTCACCGTCACCATCAC+CGG 0.526092 1_4:+72824908 None:intergenic
TCTCGTAGAGTTTCGGATGA+AGG 0.530435 1_4:+72825085 None:intergenic
GTGCTGTATAATCCAAATTA+CGG 0.530603 1_4:-72825390 Msa0183850:five_prime_UTR
GGCGGTGGTGGTGTGGAGGA+GGG 0.536524 1_4:-72824938 Msa0183850:CDS
CGAAAGTGTTACGGGTTCGC+GGG 0.537233 1_4:-72825014 Msa0183850:CDS
TATGTTGTGGCATGTGGAGA+GGG 0.538481 1_4:-72824870 Msa0183850:CDS
AAAGAAATCATCAAATCTGT+TGG 0.539406 1_4:-72823932 Msa0183850:CDS
TTCTTTGATCGTGCTGATCG+AGG 0.540804 1_4:-72824683 Msa0183850:intron
CTGCAAAAGAGGAACATGCT+AGG 0.545050 1_4:-72823979 Msa0183850:CDS
AAGCACCCAGCACATGATAT+GGG 0.547676 1_4:-72823128 Msa0183850:three_prime_UTR
GGAGGGAAAATTGCCGGTGA+TGG 0.548850 1_4:-72824921 Msa0183850:CDS
TCGTGATGCTATGAAGTACT+TGG 0.552466 1_4:-72823320 Msa0183850:CDS
TGCAAAAGAGGAACATGCTA+GGG 0.553726 1_4:-72823978 Msa0183850:CDS
AGGAACGAAATCCAATGAAA+CGG 0.556095 1_4:+72825105 None:intergenic
TGTTACGGGTTCGCGGGAGA+AGG 0.558314 1_4:-72825008 Msa0183850:CDS
AAGCTATTCGGAGTTGTTGG+AGG 0.559085 1_4:-72824750 Msa0183850:CDS
AAGGCTGTTGATCCTTCTGT+GGG 0.559583 1_4:-72824806 Msa0183850:CDS
GGAGTCCGAAGATGGAGATA+AGG 0.561789 1_4:-72824784 Msa0183850:CDS
AAAGGCTGTTGATCCTTCTG+TGG 0.562005 1_4:-72824807 Msa0183850:CDS
GTTCCCCTAATCAAAAGGCC+AGG 0.564032 1_4:+72823083 None:intergenic
GGATATCATTTGGAAGAGTA+GGG 0.564366 1_4:-72823049 Msa0183850:three_prime_UTR
AGATCATTTCGGATCCGACC+CGG 0.564462 1_4:-72825065 Msa0183850:CDS
TTATATTGCATGTGTTGGGT+AGG 0.565276 1_4:-72822894 Msa0183850:three_prime_UTR
ATTTCTTACCTATGTCTACC+AGG 0.567823 1_4:-72822851 Msa0183850:three_prime_UTR
ACAAGGCCTCTTGAAAATCA+GGG 0.569588 1_4:+72823891 None:intergenic
GCGGTTTCCGAATTTGGTGA+CGG 0.571307 1_4:-72824966 Msa0183850:CDS
GTTTCCGAATTTGGTGACGG+TGG 0.573026 1_4:-72824963 Msa0183850:CDS
GAAGAGTGACGTGTCCATCC+GGG 0.576363 1_4:+72825047 None:intergenic
TGATCCCATTCATGAGAGGT+AGG 0.576581 1_4:+72823954 None:intergenic
GATCAGCACGATCAAAGAAA+GGG 0.577300 1_4:+72824687 None:intergenic
GAACCGTATAAACGGACGGT+TGG 0.580668 1_4:+72825178 None:intergenic
ATCTTCGGACTCCCCACAGA+AGG 0.580779 1_4:+72824794 None:intergenic
GAAGGTGTTGCGGTTTATGG+AGG 0.583239 1_4:-72824990 Msa0183850:CDS
GGACACGTCACTCTTCAAGT+TGG 0.588350 1_4:-72825040 Msa0183850:CDS
TAAGAGTATGTTGTGGCATG+TGG 0.595830 1_4:-72824876 Msa0183850:CDS
TATGATGGAACATGCTCGGA+TGG 0.599363 1_4:-72824726 Msa0183850:CDS
GGATTTACTTCCACTAATGG+AGG 0.600208 1_4:-72823452 Msa0183850:CDS
GCGAGCAGAAAGATTATACA+AGG 0.601678 1_4:+72823874 None:intergenic
ACATCACATGAGCCACTACC+TGG 0.608065 1_4:+72822833 None:intergenic
GATCTGATGCATGGAACACA+CGG 0.611566 1_4:-72823379 Msa0183850:CDS
CAAACTATCACGAGGTAAAG+GGG 0.619054 1_4:+72823007 None:intergenic
CATTTCGGATCCGACCCGGA+TGG 0.625020 1_4:-72825061 Msa0183850:CDS
TCACTTTAACACGGTCGGTG+TGG 0.629253 1_4:-72825412 Msa0183850:five_prime_UTR
AGCCACTACCTGGTAGACAT+AGG 0.631630 1_4:+72822843 None:intergenic
AGGATCTTGTGAAACGTGGA+GGG 0.632842 1_4:-72824832 Msa0183850:CDS
ACATCCACATGGATGAGCTG+TGG 0.639096 1_4:-72823211 Msa0183850:three_prime_UTR
GAGGATCTTGTGAAACGTGG+AGG 0.639878 1_4:-72824833 Msa0183850:CDS
CGGTGATGGTGACGGTGACG+AGG 0.640427 1_4:-72824907 Msa0183850:CDS
GTATGTTGTGGCATGTGGAG+AGG 0.640566 1_4:-72824871 Msa0183850:CDS
TCTTTGATCCCATTCATGAG+AGG 0.644723 1_4:+72823950 None:intergenic
TAGACTTTAGCTACGTCGCG+AGG 0.645767 1_4:+72825202 None:intergenic
TGGTGAACCGTATAAACGGA+CGG 0.648385 1_4:+72825174 None:intergenic
AACTTACCAGCAATAACTTG+AGG 0.649400 1_4:+72823852 None:intergenic
AGGTTATGATGGAACATGCT+CGG 0.651869 1_4:-72824730 Msa0183850:CDS
AATGTCCCATATCATGTGCT+GGG 0.652891 1_4:+72823123 None:intergenic
AAAATTGCCGGTGATGGTGA+CGG 0.654372 1_4:-72824915 Msa0183850:CDS
GTTCGCGGGAGAAGGTGTTG+CGG 0.658726 1_4:-72825000 Msa0183850:CDS
GCGGAGGATCTTGTGAAACG+TGG 0.670820 1_4:-72824836 Msa0183850:CDS
TCTCTTCTCTCACTTTAACA+CGG 0.673752 1_4:-72825421 Msa0183850:five_prime_UTR
TGCAGCATAAGAGTATGTTG+TGG 0.678190 1_4:-72824883 Msa0183850:CDS
AAGTCCACAGCTCATCCATG+TGG 0.678878 1_4:+72823207 None:intergenic
TGTTGATGTTGATTTATGCG+TGG 0.686496 1_4:+72825487 None:intergenic
AGTGACGTGTCCATCCGGGT+CGG 0.687526 1_4:+72825051 None:intergenic
TGTTGCGGTTTATGGAGGCG+CGG 0.691904 1_4:-72824985 Msa0183850:CDS
TACTTGGATGTACATTACAG+AGG 0.703147 1_4:+72822961 None:intergenic
AGGCTGTTGATCCTTCTGTG+GGG 0.744546 1_4:-72824805 Msa0183850:CDS
AAGTACTTCATAGCATCACG+AGG 0.752222 1_4:+72823322 None:intergenic
GCCTTATCCAAACTATCACG+AGG 0.755117 1_4:+72822999 None:intergenic
GAAGTCGGAGAAATTAACGG+CGG 0.794619 1_4:-72825233 Msa0183850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAATAAATCTTTTTTTTTTT+TGG + chr1_4:72823978-72823997 None:intergenic 10.0%
!!! CATTAATTAATTTTAATTTC+AGG - chr1_4:72824089-72824108 Msa0183850:intron 10.0%
!!! TTAAGTAATTTTTTCATTTT+GGG - chr1_4:72824214-72824233 Msa0183850:intron 10.0%
!!! AATTTTATGTGTTTTTTAAA+TGG - chr1_4:72824794-72824813 Msa0183850:CDS 10.0%
!!! ATTTTATGTGTTTTTTAAAT+GGG - chr1_4:72824795-72824814 Msa0183850:CDS 10.0%
!!! TTTTTTAGTCTATTTATTTT+TGG - chr1_4:72825180-72825199 Msa0183850:CDS 10.0%
!! TTATTAGTAAAAAGAAGAAA+TGG + chr1_4:72823680-72823699 None:intergenic 15.0%
!! AAACACTTATTTGAAAATTA+AGG + chr1_4:72824191-72824210 None:intergenic 15.0%
!!! GTTAAGTAATTTTTTCATTT+TGG - chr1_4:72824213-72824232 Msa0183850:intron 15.0%
!!! TTATTAAAGTTTTTTCTTGA+AGG - chr1_4:72824982-72825001 Msa0183850:CDS 15.0%
!!! TATTAAAGTTTTTTCTTGAA+GGG - chr1_4:72824983-72825002 Msa0183850:CDS 15.0%
!! CAATTTCATATAGTTCATTT+AGG + chr1_4:72823717-72823736 None:intergenic 20.0%
!!! ATCTTTTTTTTTTTTGGTAG+TGG + chr1_4:72823972-72823991 None:intergenic 20.0%
!!! TGTATGTGTTATGTTTTAAT+TGG - chr1_4:72824025-72824044 Msa0183850:intron 20.0%
!! TTGTATTTATGTAAAAGAGA+TGG - chr1_4:72824054-72824073 Msa0183850:intron 20.0%
!! TGTATTTATGTAAAAGAGAT+GGG - chr1_4:72824055-72824074 Msa0183850:intron 20.0%
!!! TGTGCATTTATTTATCTTTT+GGG - chr1_4:72824307-72824326 Msa0183850:intron 20.0%
!!! AATAGTTACTTTATTCATGT+CGG + chr1_4:72824627-72824646 None:intergenic 20.0%
!! ATTAACTGTAAATATGCTAT+TGG + chr1_4:72824761-72824780 None:intergenic 20.0%
!!! TTTAGTCTATTTATTTTTGG+TGG - chr1_4:72825183-72825202 Msa0183850:CDS 20.0%
!!! ATGTACTTTTGAATAAATCT+GGG + chr1_4:72825405-72825424 None:intergenic 20.0%
!! ATAGTTAGTAGTTGATGTAA+AGG + chr1_4:72822999-72823018 None:intergenic 25.0%
!! TAAGTAGTGAGAATACTTTT+TGG + chr1_4:72823183-72823202 None:intergenic 25.0%
!! TTCATTTAGGACTTAATTGA+TGG + chr1_4:72823704-72823723 None:intergenic 25.0%
! ACAATGCATAAAAATATGCA+AGG - chr1_4:72823927-72823946 Msa0183850:CDS 25.0%
!!! TTTTTTTTTTTGGTAGTGGT+CGG + chr1_4:72823968-72823987 None:intergenic 25.0%
!! GTGTGCATTTATTTATCTTT+TGG - chr1_4:72824306-72824325 Msa0183850:intron 25.0%
! AAAGAAATCATCAAATCTGT+TGG - chr1_4:72824402-72824421 Msa0183850:intron 25.0%
! TCTCACTTAACTCAATTTAT+AGG - chr1_4:72824652-72824671 Msa0183850:intron 25.0%
! ACAGATTAACAAAGAAATCA+AGG + chr1_4:72824821-72824840 None:intergenic 25.0%
! TCTTTCACTTAACTATCATT+TGG + chr1_4:72825086-72825105 None:intergenic 25.0%
! AAAAAAGTAGGGATATCATT+TGG - chr1_4:72825275-72825294 Msa0183850:five_prime_UTR 25.0%
!! CATGTACTTTTGAATAAATC+TGG + chr1_4:72825406-72825425 None:intergenic 25.0%
!! TTTGTTATATTGCATGTGTT+GGG - chr1_4:72825436-72825455 Msa0183850:five_prime_UTR 25.0%
TTAAAGTGAGAGAAGAGATT+TGG + chr1_4:72822911-72822930 None:intergenic 30.0%
GTGCTGTATAATCCAAATTA+CGG - chr1_4:72822944-72822963 Msa0183850:three_prime_UTR 30.0%
ATTGGAGATTAGTGAATGAA+TGG + chr1_4:72823032-72823051 None:intergenic 30.0%
!! TTTTTGGTGAACCGTATAAA+CGG + chr1_4:72823167-72823186 None:intergenic 30.0%
AATTTCCTTATCTCCATCTT+CGG + chr1_4:72823558-72823577 None:intergenic 30.0%
!!! TTTTTTTTTTGGTAGTGGTC+GGG + chr1_4:72823967-72823986 None:intergenic 30.0%
! TAACCGTGCTAGAAAATTTT+AGG - chr1_4:72824119-72824138 Msa0183850:intron 30.0%
! AACCGTGCTAGAAAATTTTA+GGG - chr1_4:72824120-72824139 Msa0183850:intron 30.0%
!!! TTCATTTTGGGTAACTTGTT+TGG - chr1_4:72824226-72824245 Msa0183850:intron 30.0%
!! TTGTCTTTGAAGTAATGCTA+CGG - chr1_4:72824281-72824300 Msa0183850:intron 30.0%
!! TCTTTTGGGAAAAAAAATGC+AGG - chr1_4:72824321-72824340 Msa0183850:intron 30.0%
TTCTTTGTTAATCTGTCATC+AGG - chr1_4:72824825-72824844 Msa0183850:CDS 30.0%
TCTTTGTTAATCTGTCATCA+GGG - chr1_4:72824826-72824845 Msa0183850:CDS 30.0%
!!! GCATCGATTCTATTTTATCT+TGG + chr1_4:72825062-72825081 None:intergenic 30.0%
! TTTTAATCATCACATCCACA+TGG - chr1_4:72825112-72825131 Msa0183850:CDS 30.0%
! TTTTTGTTCCCCTAATCAAA+AGG + chr1_4:72825259-72825278 None:intergenic 30.0%
ATTAGGGGAACAAAAAAAGT+AGG - chr1_4:72825263-72825282 Msa0183850:exon 30.0%
TTAGGGGAACAAAAAAAGTA+GGG - chr1_4:72825264-72825283 Msa0183850:exon 30.0%
GTAATGTACATCCAAGTATA+TGG - chr1_4:72825378-72825397 Msa0183850:five_prime_UTR 30.0%
! TCAAAAGTACATGAGTTTAC+TGG - chr1_4:72825413-72825432 Msa0183850:five_prime_UTR 30.0%
!! GTTTGTTATATTGCATGTGT+TGG - chr1_4:72825435-72825454 Msa0183850:five_prime_UTR 30.0%
!! TGTTGATGTTGATTTATGCG+TGG + chr1_4:72822850-72822869 None:intergenic 35.0%
TCTCTTCTCTCACTTTAACA+CGG - chr1_4:72822913-72822932 Msa0183850:three_prime_UTR 35.0%
TTGAAAACGACACCGTAATT+TGG + chr1_4:72822959-72822978 None:intergenic 35.0%
TGTGAAGTCGGAGAAATTAA+CGG - chr1_4:72823098-72823117 Msa0183850:three_prime_UTR 35.0%
TCTTCACAAATCCGTTTCAT+TGG - chr1_4:72823218-72823237 Msa0183850:three_prime_UTR 35.0%
AGGAACGAAATCCAATGAAA+CGG + chr1_4:72823232-72823251 None:intergenic 35.0%
GAAATGATCTCGTAGAGTTT+CGG + chr1_4:72823259-72823278 None:intergenic 35.0%
GAAACTCTACGAGATCATTT+CGG - chr1_4:72823258-72823277 Msa0183850:CDS 35.0%
GCATAAAAATATGCAAGGTC+CGG - chr1_4:72823932-72823951 Msa0183850:CDS 35.0%
CATAAAAATATGCAAGGTCC+GGG - chr1_4:72823933-72823952 Msa0183850:CDS 35.0%
ATAAAAATATGCAAGGTCCG+GGG - chr1_4:72823934-72823953 Msa0183850:CDS 35.0%
!!! TTTTTTTTTGGTAGTGGTCG+GGG + chr1_4:72823966-72823985 None:intergenic 35.0%
!! GACCCTAAAATTTTCTAGCA+CGG + chr1_4:72824125-72824144 None:intergenic 35.0%
!!! TTTTGGGTAACTTGTTTGGT+AGG - chr1_4:72824230-72824249 Msa0183850:intron 35.0%
!! CATCAAATCTGTTGGTGTTT+TGG - chr1_4:72824410-72824429 Msa0183850:intron 35.0%
AACTTACCAGCAATAACTTG+AGG + chr1_4:72824485-72824504 None:intergenic 35.0%
! CTCTTAGGAATAGCTCATTT+TGG - chr1_4:72824508-72824527 Msa0183850:intron 35.0%
CTTTGTTAATCTGTCATCAG+GGG - chr1_4:72824827-72824846 Msa0183850:CDS 35.0%
CAAACAACATTTCAAGGAAG+AGG - chr1_4:72824855-72824874 Msa0183850:CDS 35.0%
! AGTGGATTTACTTCCACTAA+TGG - chr1_4:72824879-72824898 Msa0183850:CDS 35.0%
!!! CAATGTTTTGATCTGATGCA+TGG - chr1_4:72824946-72824965 Msa0183850:CDS 35.0%
GATAGTTAAGTGAAAGATGC+AGG - chr1_4:72825089-72825108 Msa0183850:CDS 35.0%
GGATATCATTTGGAAGAGTA+GGG - chr1_4:72825285-72825304 Msa0183850:five_prime_UTR 35.0%
TACTTGGATGTACATTACAG+AGG + chr1_4:72825376-72825395 None:intergenic 35.0%
TAAATCTGGGTCCATATACT+TGG + chr1_4:72825392-72825411 None:intergenic 35.0%
TTATATTGCATGTGTTGGGT+AGG - chr1_4:72825440-72825459 Msa0183850:five_prime_UTR 35.0%
ATTTCTTACCTATGTCTACC+AGG - chr1_4:72825483-72825502 Msa0183850:five_prime_UTR 35.0%
! GTGAGAGAAGAGATTTGGTT+TGG + chr1_4:72822906-72822925 None:intergenic 40.0%
TTCTCTCACTTTAACACGGT+CGG - chr1_4:72822917-72822936 Msa0183850:three_prime_UTR 40.0%
!!! GAAGTTGTTTTGGTTGGGAT+TGG + chr1_4:72823050-72823069 None:intergenic 40.0%
!!! GCAGTGAAGTTGTTTTGGTT+GGG + chr1_4:72823055-72823074 None:intergenic 40.0%
!!! TGCAGTGAAGTTGTTTTGGT+TGG + chr1_4:72823056-72823075 None:intergenic 40.0%
! GTGTTGCAGTGAAGTTGTTT+TGG + chr1_4:72823060-72823079 None:intergenic 40.0%
ACTTCACTGCAACACTCTAA+TGG - chr1_4:72823065-72823084 Msa0183850:three_prime_UTR 40.0%
CTTCACTGCAACACTCTAAT+GGG - chr1_4:72823066-72823085 Msa0183850:three_prime_UTR 40.0%
! GGGAAACTGTTTTGTGAAGT+CGG - chr1_4:72823086-72823105 Msa0183850:three_prime_UTR 40.0%
TATCCAACCGTCCGTTTATA+CGG - chr1_4:72823153-72823172 Msa0183850:three_prime_UTR 40.0%
!! AGTTGGATCCGAAAGTGTTA+CGG - chr1_4:72823311-72823330 Msa0183850:CDS 40.0%
! TGCAGCATAAGAGTATGTTG+TGG - chr1_4:72823451-72823470 Msa0183850:CDS 40.0%
! TAAGAGTATGTTGTGGCATG+TGG - chr1_4:72823458-72823477 Msa0183850:CDS 40.0%
GAAATTCGCGAGAAGCTATT+CGG - chr1_4:72823572-72823591 Msa0183850:intron 40.0%
! AGGTTATGATGGAACATGCT+CGG - chr1_4:72823604-72823623 Msa0183850:intron 40.0%
GATCAGCACGATCAAAGAAA+GGG + chr1_4:72823650-72823669 None:intergenic 40.0%
AATGCTAAACAGTGCCTTGA+GGG + chr1_4:72824166-72824185 None:intergenic 40.0%
!! ACTCTCTAAAGCTGCAAAAG+AGG - chr1_4:72824344-72824363 Msa0183850:intron 40.0%
TGCAAAAGAGGAACATGCTA+GGG - chr1_4:72824356-72824375 Msa0183850:intron 40.0%
TCTTTGATCCCATTCATGAG+AGG + chr1_4:72824387-72824406 None:intergenic 40.0%
ACAAGGCCTCTTGAAAATCA+GGG + chr1_4:72824446-72824465 None:intergenic 40.0%
TACAAGGCCTCTTGAAAATC+AGG + chr1_4:72824447-72824466 None:intergenic 40.0%
GCGAGCAGAAAGATTATACA+AGG + chr1_4:72824463-72824482 None:intergenic 40.0%
TCTAAGAGCGGTTCAAATCA+AGG + chr1_4:72824729-72824748 None:intergenic 40.0%
!! TGGCAGTAATGTTCTAAGAG+CGG + chr1_4:72824741-72824760 None:intergenic 40.0%
GCAGTGCAAACAACATTTCA+AGG - chr1_4:72824849-72824868 Msa0183850:CDS 40.0%
ACATTTCAAGGAAGAGGAAG+TGG - chr1_4:72824861-72824880 Msa0183850:CDS 40.0%
GGATTTACTTCCACTAATGG+AGG - chr1_4:72824882-72824901 Msa0183850:CDS 40.0%
AAGTACTTCATAGCATCACG+AGG + chr1_4:72825015-72825034 None:intergenic 40.0%
! TCGTGATGCTATGAAGTACT+TGG - chr1_4:72825014-72825033 Msa0183850:CDS 40.0%
AATGTCCCATATCATGTGCT+GGG + chr1_4:72825214-72825233 None:intergenic 40.0%
TCTTGTTGAACATGTTAGCC+TGG - chr1_4:72825233-72825252 Msa0183850:CDS 40.0%
!! TTAGCCTGGCCTTTTGATTA+GGG - chr1_4:72825247-72825266 Msa0183850:CDS 40.0%
GGGATATCATTTGGAAGAGT+AGG - chr1_4:72825284-72825303 Msa0183850:five_prime_UTR 40.0%
CAAACTATCACGAGGTAAAG+GGG + chr1_4:72825330-72825349 None:intergenic 40.0%
CCAAACTATCACGAGGTAAA+GGG + chr1_4:72825331-72825350 None:intergenic 40.0%
TCCAAACTATCACGAGGTAA+AGG + chr1_4:72825332-72825351 None:intergenic 40.0%
ACCTCGTGATAGTTTGGATA+AGG - chr1_4:72825334-72825353 Msa0183850:five_prime_UTR 40.0%
!! TTGGTTTGGTGTTAGCTTCG+AGG + chr1_4:72822892-72822911 None:intergenic 45.0%
GAAGTCGGAGAAATTAACGG+CGG - chr1_4:72823101-72823120 Msa0183850:three_prime_UTR 45.0%
TGGTGAACCGTATAAACGGA+CGG + chr1_4:72823163-72823182 None:intergenic 45.0%
TCTCGTAGAGTTTCGGATGA+AGG + chr1_4:72823252-72823271 None:intergenic 45.0%
!! GTTGGATCCGAAAGTGTTAC+GGG - chr1_4:72823312-72823331 Msa0183850:CDS 45.0%
!! TTTCCGAATTTGGTGACGGT+GGG - chr1_4:72823372-72823391 Msa0183850:CDS 45.0%
! AAAATTGCCGGTGATGGTGA+CGG - chr1_4:72823419-72823438 Msa0183850:CDS 45.0%
TATGTTGTGGCATGTGGAGA+GGG - chr1_4:72823464-72823483 Msa0183850:CDS 45.0%
AGGATCTTGTGAAACGTGGA+GGG - chr1_4:72823502-72823521 Msa0183850:intron 45.0%
TGTGAAACGTGGAGGGAAAA+AGG - chr1_4:72823509-72823528 Msa0183850:intron 45.0%
AAAGGCTGTTGATCCTTCTG+TGG - chr1_4:72823527-72823546 Msa0183850:intron 45.0%
AAGGCTGTTGATCCTTCTGT+GGG - chr1_4:72823528-72823547 Msa0183850:intron 45.0%
GAGAAGCTATTCGGAGTTGT+TGG - chr1_4:72823581-72823600 Msa0183850:intron 45.0%
AAGCTATTCGGAGTTGTTGG+AGG - chr1_4:72823584-72823603 Msa0183850:intron 45.0%
GGAGTTGTTGGAGGTTATGA+TGG - chr1_4:72823593-72823612 Msa0183850:intron 45.0%
! TATGATGGAACATGCTCGGA+TGG - chr1_4:72823608-72823627 Msa0183850:intron 45.0%
CGATCAGCACGATCAAAGAA+AGG + chr1_4:72823651-72823670 None:intergenic 45.0%
! TTCTTTGATCGTGCTGATCG+AGG - chr1_4:72823651-72823670 Msa0183850:intron 45.0%
AACTCTGAGCTTAGCTCAGA+TGG - chr1_4:72823900-72823919 Msa0183850:CDS 45.0%
TAACAAGTGTCATGCCCTCA+AGG - chr1_4:72824149-72824168 Msa0183850:intron 45.0%
GAATGCTAAACAGTGCCTTG+AGG + chr1_4:72824167-72824186 None:intergenic 45.0%
! AACTTGTTTGGTAGGCCACT+AGG - chr1_4:72824238-72824257 Msa0183850:intron 45.0%
CTTCCTTTCTCAAAGCCTAG+TGG + chr1_4:72824256-72824275 None:intergenic 45.0%
CTGCAAAAGAGGAACATGCT+AGG - chr1_4:72824355-72824374 Msa0183850:intron 45.0%
TGATCCCATTCATGAGAGGT+AGG + chr1_4:72824383-72824402 None:intergenic 45.0%
!! TCTGTTGGTGTTTTGGACTC+TGG - chr1_4:72824417-72824436 Msa0183850:intron 45.0%
!! TGGAAGCCCTGATTTTCAAG+AGG - chr1_4:72824437-72824456 Msa0183850:intron 45.0%
TGCTGGTAAGTTCAGCTCTT+AGG - chr1_4:72824493-72824512 Msa0183850:intron 45.0%
AAGAGCGGTTCAAATCAAGG+AGG + chr1_4:72824726-72824745 None:intergenic 45.0%
! ACTTCCACTAATGGAGGCAT+TGG - chr1_4:72824888-72824907 Msa0183850:CDS 45.0%
AACTCCAATGCCTCCATTAG+TGG + chr1_4:72824895-72824914 None:intergenic 45.0%
GATCTGATGCATGGAACACA+CGG - chr1_4:72824955-72824974 Msa0183850:CDS 45.0%
AAGCACCCAGCACATGATAT+GGG - chr1_4:72825206-72825225 Msa0183850:CDS 45.0%
GAATGTCCCATATCATGTGC+TGG + chr1_4:72825215-72825234 None:intergenic 45.0%
!! GTTAGCCTGGCCTTTTGATT+AGG - chr1_4:72825246-72825265 Msa0183850:CDS 45.0%
!! TAGCCTGGCCTTTTGATTAG+GGG - chr1_4:72825248-72825267 Msa0183850:CDS 45.0%
ATCACGAGGTAAAGGGGAAA+AGG + chr1_4:72825324-72825343 None:intergenic 45.0%
CCCTTTACCTCGTGATAGTT+TGG - chr1_4:72825328-72825347 Msa0183850:five_prime_UTR 45.0%
GCCTTATCCAAACTATCACG+AGG + chr1_4:72825338-72825357 None:intergenic 45.0%
TACCTATGTCTACCAGGTAG+TGG - chr1_4:72825489-72825508 Msa0183850:five_prime_UTR 45.0%
!!! ATTAATTAATTTTAATTTCA+GGG - chr1_4:72824090-72824109 Msa0183850:intron 5.0%
!! CTTCGAGGTCAAGCTCTGAA+TGG + chr1_4:72822877-72822896 None:intergenic 50.0%
TCACTTTAACACGGTCGGTG+TGG - chr1_4:72822922-72822941 Msa0183850:three_prime_UTR 50.0%
TAGACTTTAGCTACGTCGCG+AGG + chr1_4:72823135-72823154 None:intergenic 50.0%
GAACCGTATAAACGGACGGT+TGG + chr1_4:72823159-72823178 None:intergenic 50.0%
AGATCATTTCGGATCCGACC+CGG - chr1_4:72823269-72823288 Msa0183850:CDS 50.0%
TGAAGAGTGACGTGTCCATC+CGG + chr1_4:72823291-72823310 None:intergenic 50.0%
GGACACGTCACTCTTCAAGT+TGG - chr1_4:72823294-72823313 Msa0183850:CDS 50.0%
!! GGAGAAGGTGTTGCGGTTTA+TGG - chr1_4:72823341-72823360 Msa0183850:CDS 50.0%
!! GAAGGTGTTGCGGTTTATGG+AGG - chr1_4:72823344-72823363 Msa0183850:CDS 50.0%
! GCGGTTTCCGAATTTGGTGA+CGG - chr1_4:72823368-72823387 Msa0183850:CDS 50.0%
!! GTTTCCGAATTTGGTGACGG+TGG - chr1_4:72823371-72823390 Msa0183850:CDS 50.0%
TGTGGAGGAGGGAAAATTGC+CGG - chr1_4:72823407-72823426 Msa0183850:CDS 50.0%
GTATGTTGTGGCATGTGGAG+AGG - chr1_4:72823463-72823482 Msa0183850:CDS 50.0%
!!! ATGTGGAGAGGGTTTTGAGG+TGG - chr1_4:72823475-72823494 Msa0183850:CDS 50.0%
!!! TGTGGAGAGGGTTTTGAGGT+GGG - chr1_4:72823476-72823495 Msa0183850:CDS 50.0%
GAGGATCTTGTGAAACGTGG+AGG - chr1_4:72823501-72823520 Msa0183850:intron 50.0%
AGGCTGTTGATCCTTCTGTG+GGG - chr1_4:72823529-72823548 Msa0183850:intron 50.0%
GGAGTCCGAAGATGGAGATA+AGG - chr1_4:72823550-72823569 Msa0183850:intron 50.0%
CTGAGCTTAGCTCAGATGGT+TGG - chr1_4:72823904-72823923 Msa0183850:CDS 50.0%
!! AGGCCACTAGGCTTTGAGAA+AGG - chr1_4:72824250-72824269 Msa0183850:intron 50.0%
AGGGACCTACCTCTCATGAA+TGG - chr1_4:72824375-72824394 Msa0183850:intron 50.0%
GGGACCTACCTCTCATGAAT+GGG - chr1_4:72824376-72824395 Msa0183850:intron 50.0%
TGCTCGCCTCAAGTTATTGC+TGG - chr1_4:72824476-72824495 Msa0183850:intron 50.0%
ACATCCACATGGATGAGCTG+TGG - chr1_4:72825123-72825142 Msa0183850:CDS 50.0%
AAGTCCACAGCTCATCCATG+TGG + chr1_4:72825130-72825149 None:intergenic 50.0%
! GAAGCACCCAGCACATGATA+TGG - chr1_4:72825205-72825224 Msa0183850:CDS 50.0%
GTTCCCCTAATCAAAAGGCC+AGG + chr1_4:72825254-72825273 None:intergenic 50.0%
GAAGAGTGACGTGTCCATCC+GGG + chr1_4:72823290-72823309 None:intergenic 55.0%
CCGCGAACCCGTAACACTTT+CGG + chr1_4:72823322-72823341 None:intergenic 55.0%
!! CCGAAAGTGTTACGGGTTCG+CGG - chr1_4:72823319-72823338 Msa0183850:CDS 55.0%
!! CGAAAGTGTTACGGGTTCGC+GGG - chr1_4:72823320-72823339 Msa0183850:CDS 55.0%
TGTTGCGGTTTATGGAGGCG+CGG - chr1_4:72823349-72823368 Msa0183850:CDS 55.0%
GGAGGGAAAATTGCCGGTGA+TGG - chr1_4:72823413-72823432 Msa0183850:CDS 55.0%
! GGCATGTGGAGAGGGTTTTG+AGG - chr1_4:72823472-72823491 Msa0183850:CDS 55.0%
GCGGAGGATCTTGTGAAACG+TGG - chr1_4:72823498-72823517 Msa0183850:intron 55.0%
ATCTTCGGACTCCCCACAGA+AGG + chr1_4:72823543-72823562 None:intergenic 55.0%
TTCTGTGGGGAGTCCGAAGA+TGG - chr1_4:72823542-72823561 Msa0183850:intron 55.0%
CATTTCGGATCCGACCCGGA+TGG - chr1_4:72823273-72823292 Msa0183850:CDS 60.0%
AGTGACGTGTCCATCCGGGT+CGG + chr1_4:72823286-72823305 None:intergenic 60.0%
TGTTACGGGTTCGCGGGAGA+AGG - chr1_4:72823326-72823345 Msa0183850:CDS 60.0%
!! GTTCGCGGGAGAAGGTGTTG+CGG - chr1_4:72823334-72823353 Msa0183850:CDS 60.0%
! GGAGGCGCGGTTTCCGAATT+TGG - chr1_4:72823362-72823381 Msa0183850:CDS 60.0%
CCGCCCACCGTCACCAAATT+CGG + chr1_4:72823378-72823397 None:intergenic 60.0%
!! CCGAATTTGGTGACGGTGGG+CGG - chr1_4:72823375-72823394 Msa0183850:CDS 60.0%
!! AATTTGGTGACGGTGGGCGG+CGG - chr1_4:72823378-72823397 Msa0183850:CDS 60.0%
CTCGTCACCGTCACCATCAC+CGG + chr1_4:72823429-72823448 None:intergenic 60.0%
!!! GGAGAGGGTTTTGAGGTGGG+CGG - chr1_4:72823479-72823498 Msa0183850:CDS 60.0%
AGTGGTCGGGGTTTGAACCC+CGG + chr1_4:72823954-72823973 None:intergenic 60.0%
!! CGGTGATGGTGACGGTGACG+AGG - chr1_4:72823427-72823446 Msa0183850:CDS 65.0%
!!! GAGGGTTTTGAGGTGGGCGG+AGG - chr1_4:72823482-72823501 Msa0183850:CDS 65.0%
! GGCGGTGGTGGTGTGGAGGA+GGG - chr1_4:72823396-72823415 Msa0183850:CDS 70.0%
!! TTGGTGACGGTGGGCGGCGG+TGG - chr1_4:72823381-72823400 Msa0183850:CDS 75.0%
! CGGCGGTGGTGGTGTGGAGG+AGG - chr1_4:72823395-72823414 Msa0183850:CDS 75.0%
! GTGACGGTGGGCGGCGGTGG+TGG - chr1_4:72823384-72823403 Msa0183850:CDS 80.0%
!! GGTGGGCGGCGGTGGTGGTG+TGG - chr1_4:72823389-72823408 Msa0183850:CDS 80.0%
!! GGGCGGCGGTGGTGGTGTGG+AGG - chr1_4:72823392-72823411 Msa0183850:CDS 80.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 72822844 72825512 72822844 ID=Msa0183850;Name=Msa0183850
chr1_4 mRNA 72822844 72825512 72822844 ID=Msa0183850-mRNA-1;Parent=Msa0183850;Name=Msa0183850-mRNA-1;_AED=0.02;_eAED=0.02;_QI=240|1|1|1|1|1|3|411|332
chr1_4 exon 72822844 72823509 72822844 ID=Msa0183850-mRNA-1:exon:24728;Parent=Msa0183850-mRNA-1
chr1_4 exon 72823859 72824013 72823859 ID=Msa0183850-mRNA-1:exon:24727;Parent=Msa0183850-mRNA-1
chr1_4 exon 72824684 72825512 72824684 ID=Msa0183850-mRNA-1:exon:24726;Parent=Msa0183850-mRNA-1
chr1_4 five_prime_UTR 72825273 72825512 72825273 ID=Msa0183850-mRNA-1:five_prime_utr;Parent=Msa0183850-mRNA-1
chr1_4 CDS 72824684 72825272 72824684 ID=Msa0183850-mRNA-1:cds;Parent=Msa0183850-mRNA-1
chr1_4 CDS 72823859 72824013 72823859 ID=Msa0183850-mRNA-1:cds;Parent=Msa0183850-mRNA-1
chr1_4 CDS 72823255 72823509 72823255 ID=Msa0183850-mRNA-1:cds;Parent=Msa0183850-mRNA-1
chr1_4 three_prime_UTR 72822844 72823254 72822844 ID=Msa0183850-mRNA-1:three_prime_utr;Parent=Msa0183850-mRNA-1
Gene Sequence

>Msa0183850

ATGGGAAACTGTTTTGTGAAGTCGGAGAAATTAACGGCGGAGATTATACCTCGCGACGTAGCTAAAGTCTATCCAACCGTCCGTTTATACGGTTCACCAAAAAGTATTCTCACTACTTACATTCGTTTCGCTCTTCTTCACAAATCCGTTTCATTGGATTTCGTTCCTTCATCCGAAACTCTACGAGATCATTTCGGATCCGACCCGGATGGACACGTCACTCTTCAAGTTGGATCCGAAAGTGTTACGGGTTCGCGGGAGAAGGTGTTGCGGTTTATGGAGGCGCGGTTTCCGAATTTGGTGACGGTGGGCGGCGGTGGTGGTGTGGAGGAGGGAAAATTGCCGGTGATGGTGACGGTGACGAGGTTGCAGCATAAGAGTATGTTGTGGCATGTGGAGAGGGTTTTGAGGTGGGCGGAGGATCTTGTGAAACGTGGAGGGAAAAAGGCTGTTGATCCTTCTGTGGGGAGTCCGAAGATGGAGATAAGGAAATTCGCGAGAAGCTATTCGGAGTTGTTGGAGGTTATGATGGAACATGCTCGGATGGAAGAGACTCTTCTCTTCCCTTTCTTTGATCGTGCTGATCGAGGACTCTCTAAAGCTGCAAAAGAGGAACATGCTAGGGACCTACCTCTCATGAATGGGATCAAAGAAATCATCAAATCTGTTGGTGTTTTGGACTCTGGAAGCCCTGATTTTCAAGAGGCCTTGTATAATCTTTCTGCTCGCCTCAAGTTATTGCTGGGGCAGTGCAAACAACATTTCAAGGAAGAGGAAGTGGATTTACTTCCACTAATGGAGGCATTGGAGTTAAGCAAAGATCAAGAAGAGACTGCACTAGATCAATGTTTTGATCTGATGCATGGAACACACGGTCGTTTATTAAAGTTTTTTCTTGAAGGGCTTCAACCTCGTGATGCTATGAAGTACTTGGACTTGATTAGCATGTGTAGTAACCAAGATAAAATAGAATCGATGCTCCAAATGATAGTTAAGTGA

Protein sequence

>Msa0183850

MGNCFVKSEKLTAEIIPRDVAKVYPTVRLYGSPKSILTTYIRFALLHKSVSLDFVPSSETLRDHFGSDPDGHVTLQVGSESVTGSREKVLRFMEARFPNLVTVGGGGGVEEGKLPVMVTVTRLQHKSMLWHVERVLRWAEDLVKRGGKKAVDPSVGSPKMEIRKFARSYSELLEVMMEHARMEETLLFPFFDRADRGLSKAAKEEHARDLPLMNGIKEIIKSVGVLDSGSPDFQEALYNLSARLKLLLGQCKQHFKEEEVDLLPLMEALELSKDQEETALDQCFDLMHGTHGRLLKFFLEGLQPRDAMKYLDLISMCSNQDKIESMLQMIVK*