AlfalfaGEDB | Msa0601410

M. sativa cultivar zhongmu-4 / Msa0601410

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0601410	XP_013455827.1	95.670	1224	46	2	20	1243	20	1236	0.0	2397

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0160670	Msa0601410	0.805119	1.557224e-49	-8.615850e-47
Msa0191250	Msa0601410	0.811555	6.602014e-51	-8.615850e-47
Msa0197810	Msa0601410	0.807105	5.945343e-50	-8.615850e-47
Msa0272730	Msa0601410	0.801075	1.068345e-48	-8.615850e-47
Msa0315490	Msa0601410	0.802798	4.729229e-49	-8.615850e-47
Msa0351380	Msa0601410	0.805594	1.238000e-49	-8.615850e-47
Msa0398240	Msa0601410	0.818556	1.842729e-52	-8.615850e-47
Msa0452920	Msa0601410	0.803201	3.902517e-49	-8.615850e-47
Msa0521020	Msa0601410	0.801775	7.678129e-49	-8.615850e-47
Msa0601410	Msa0626280	0.801918	7.178431e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0601410	MtrunA17_Chr4g0026411	95.670	1224	46	2	20	1243	20	1236	0.0	2397
Msa0601410	MtrunA17_Chr2g0299971	29.456	1341	735	51	1	1243	45	1272	1.73e-105	362
Msa0601410	MtrunA17_Chr1g0210751	29.877	1302	653	40	1	1237	48	1154	8.97e-102	350
Msa0601410	MtrunA17_Chr4g0070881	28.670	1301	765	40	25	1243	75	1294	1.99e-91	322

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0601410	AT5G22450.3	41.647	1263	598	37	1	1237	1	1150	0.0	742
Msa0601410	AT5G22450.1	41.647	1263	598	37	1	1237	1	1150	0.0	742
Msa0601410	AT5G22450.2	41.647	1263	598	37	1	1237	1	1150	0.0	742
Msa0601410	AT2G19390.1	29.666	1318	685	57	12	1243	50	1211	9.17e-94	328
Msa0601410	AT2G19390.2	29.666	1318	685	57	12	1243	50	1211	9.17e-94	328
Msa0601410	AT4G29790.1	29.514	1318	686	52	12	1243	51	1211	3.91e-92	323

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Find 356 sgRNAs with CRISPR-Local

Find 816 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAATAAAAGAGAAA+GGG	0.477037	4_2:-44018611	Msa0601410:CDS
AAAACATGCAGATTACCTGC+TGG	0.551629	4_2:-44021206	Msa0601410:CDS
AAAACCACTCAAGGTTCACA+GGG	0.640738	4_2:-44017117	Msa0601410:CDS
AAAATATATCTAAATTGGAT+GGG	0.562372	4_2:-44021936	Msa0601410:CDS
AAAATGCCAAGAGATGAATC+AGG	0.515846	4_2:-44018519	Msa0601410:CDS
AAACAAAATAAAAGAGAAAG+GGG	0.571656	4_2:-44018610	Msa0601410:CDS
AAACGAGCTACCCTTCCAAA+TGG	0.486000	4_2:-44021098	Msa0601410:CDS
AAACTAGGATTATATAATTC+AGG	0.282481	4_2:+44016643	None:intergenic
AAAGAAGTCTTTGGAATAAT+GGG	0.282055	4_2:+44017028	None:intergenic
AAAGACGGGGCATCATTATC+TGG	0.395145	4_2:-44013726	Msa0601410:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTCAACACTCTACTATCT+AGG	-	chr4_2:44012910-44012929	Msa0601410:three_prime_UTR	30.0%
ATTCAACACTCTACTATCTA+GGG	-	chr4_2:44012911-44012930	Msa0601410:three_prime_UTR	30.0%
ACTTAAACTACTAAATCGGT+TGG	+	chr4_2:44013402-44013421	None:intergenic	30.0%
CAATTGTTTGGAGATACATA+TGG	-	chr4_2:44013479-44013498	Msa0601410:three_prime_UTR	30.0%
TACCTAATCATATGATGTGT+TGG	-	chr4_2:44013568-44013587	Msa0601410:CDS	30.0%
CCAAGTGTGTAAGAAAAAAT+GGG	+	chr4_2:44013626-44013645	None:intergenic	30.0%
TCCAAGTGTGTAAGAAAAAA+TGG	+	chr4_2:44013627-44013646	None:intergenic	30.0%
TCAATTCACTGCAAAATTTG+TGG	-	chr4_2:44013700-44013719	Msa0601410:CDS	30.0%
TAGATCACATTGTGAAATTG+TGG	+	chr4_2:44013747-44013766	None:intergenic	30.0%
AGTTCTGTGAGTAACTTAAA+CGG	-	chr4_2:44013996-44014015	Msa0601410:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	44012906	44023839	44012906	ID=Msa0601410;Name=Msa0601410
chr4_2	mRNA	44012906	44023839	44012906	ID=Msa0601410-mRNA-1;Parent=Msa0601410;Name=Msa0601410-mRNA-1;_AED=0.06;_eAED=0.06;_QI=171\|1\|1\|1\|0.87\|0.94\|17\|597\|1243
chr4_2	exon	44012906	44014221	44012906	ID=Msa0601410-mRNA-1:exon:9690;Parent=Msa0601410-mRNA-1
chr4_2	exon	44014453	44014717	44014453	ID=Msa0601410-mRNA-1:exon:9689;Parent=Msa0601410-mRNA-1
chr4_2	exon	44015968	44016025	44015968	ID=Msa0601410-mRNA-1:exon:9688;Parent=Msa0601410-mRNA-1
chr4_2	exon	44016205	44016275	44016205	ID=Msa0601410-mRNA-1:exon:9687;Parent=Msa0601410-mRNA-1
chr4_2	exon	44016382	44016453	44016382	ID=Msa0601410-mRNA-1:exon:9686;Parent=Msa0601410-mRNA-1
chr4_2	exon	44016552	44017157	44016552	ID=Msa0601410-mRNA-1:exon:9685;Parent=Msa0601410-mRNA-1
chr4_2	exon	44017355	44017420	44017355	ID=Msa0601410-mRNA-1:exon:9684;Parent=Msa0601410-mRNA-1
chr4_2	exon	44017540	44017625	44017540	ID=Msa0601410-mRNA-1:exon:9683;Parent=Msa0601410-mRNA-1
chr4_2	exon	44017741	44017803	44017741	ID=Msa0601410-mRNA-1:exon:9682;Parent=Msa0601410-mRNA-1
chr4_2	exon	44018196	44018296	44018196	ID=Msa0601410-mRNA-1:exon:9681;Parent=Msa0601410-mRNA-1
chr4_2	exon	44018378	44018918	44018378	ID=Msa0601410-mRNA-1:exon:9680;Parent=Msa0601410-mRNA-1
chr4_2	exon	44018997	44019130	44018997	ID=Msa0601410-mRNA-1:exon:9679;Parent=Msa0601410-mRNA-1
chr4_2	exon	44019312	44019470	44019312	ID=Msa0601410-mRNA-1:exon:9678;Parent=Msa0601410-mRNA-1
chr4_2	exon	44021053	44021330	44021053	ID=Msa0601410-mRNA-1:exon:9677;Parent=Msa0601410-mRNA-1
chr4_2	exon	44021744	44021981	44021744	ID=Msa0601410-mRNA-1:exon:9676;Parent=Msa0601410-mRNA-1
chr4_2	exon	44022481	44022845	44022481	ID=Msa0601410-mRNA-1:exon:9675;Parent=Msa0601410-mRNA-1
chr4_2	exon	44023759	44023839	44023759	ID=Msa0601410-mRNA-1:exon:9674;Parent=Msa0601410-mRNA-1
chr4_2	five_prime_UTR	44023759	44023839	44023759	ID=Msa0601410-mRNA-1:five_prime_utr;Parent=Msa0601410-mRNA-1
chr4_2	five_prime_UTR	44022756	44022845	44022756	ID=Msa0601410-mRNA-1:five_prime_utr;Parent=Msa0601410-mRNA-1
chr4_2	CDS	44022481	44022755	44022481	ID=Msa0601410-mRNA-1:cds;Parent=Msa0601410-mRNA-1
chr4_2	CDS	44021744	44021981	44021744	ID=Msa0601410-mRNA-1:cds;Parent=Msa0601410-mRNA-1
chr4_2	CDS	44021053	44021330	44021053	ID=Msa0601410-mRNA-1:cds;Parent=Msa0601410-mRNA-1
chr4_2	CDS	44019312	44019470	44019312	ID=Msa0601410-mRNA-1:cds;Parent=Msa0601410-mRNA-1
chr4_2	CDS	44018997	44019130	44018997	ID=Msa0601410-mRNA-1:cds;Parent=Msa0601410-mRNA-1
chr4_2	CDS	44018378	44018918	44018378	ID=Msa0601410-mRNA-1:cds;Parent=Msa0601410-mRNA-1
chr4_2	CDS	44018196	44018296	44018196	ID=Msa0601410-mRNA-1:cds;Parent=Msa0601410-mRNA-1
chr4_2	CDS	44017741	44017803	44017741	ID=Msa0601410-mRNA-1:cds;Parent=Msa0601410-mRNA-1
chr4_2	CDS	44017540	44017625	44017540	ID=Msa0601410-mRNA-1:cds;Parent=Msa0601410-mRNA-1
chr4_2	CDS	44017355	44017420	44017355	ID=Msa0601410-mRNA-1:cds;Parent=Msa0601410-mRNA-1
chr4_2	CDS	44016552	44017157	44016552	ID=Msa0601410-mRNA-1:cds;Parent=Msa0601410-mRNA-1
chr4_2	CDS	44016382	44016453	44016382	ID=Msa0601410-mRNA-1:cds;Parent=Msa0601410-mRNA-1
chr4_2	CDS	44016205	44016275	44016205	ID=Msa0601410-mRNA-1:cds;Parent=Msa0601410-mRNA-1
chr4_2	CDS	44015968	44016025	44015968	ID=Msa0601410-mRNA-1:cds;Parent=Msa0601410-mRNA-1
chr4_2	CDS	44014453	44014717	44014453	ID=Msa0601410-mRNA-1:cds;Parent=Msa0601410-mRNA-1
chr4_2	CDS	44013503	44014221	44013503	ID=Msa0601410-mRNA-1:cds;Parent=Msa0601410-mRNA-1
chr4_2	three_prime_UTR	44012906	44013502	44012906	ID=Msa0601410-mRNA-1:three_prime_utr;Parent=Msa0601410-mRNA-1

Gene Sequence

>Msa0601410

ATGTTGAGTTCTGTGAGTAACTTAAACGGCAGCAGCACAAGTGGGATAACTTCATCGGATATGCCACCTTTGCCCCAGTGTTTGCCGCTAGATTTGATCACTGTAGGAAATAAAAAATATACGGGAGAGCTAAAGAGGGTTCTGGGTGTTCCTCCTGGAAACACCTCAGAAGACCATTCTTTTGGAGTTCCACATCCTAAATCAATGGGCCCAGGAGCCTCAGGGGAGTTAAAACACATAAAGGAAAGTGTTCAAGATGCCTCCAAAAAGGCTAGGGATAGATCAAAAATGCTTGAGGAAAATATATCTAAATTGGATGGGTATACGGAGGCCTTAAACTCAAAGAAGCGACAAAGGAATGATTTATCAAGTGAAAGGGGGAGTGGAGTAAAGTTAACAAAGATGGGAAGCCAGATTCACAAAATCCCAAATGATAATATGACTCCAAGAGAAGTCAAGACCCCAAAATCAATGCTGAACAAGCGAATTCGTACCTCGGTGGCAGACATGCGGGAGGAAAGTAGGTCTGCTTCTATCGGAAGACAGCAGATGCTCACTGAGAAGGATGGAAATCTGATTCAGACACTTAGTGGGGGCTCTGTTCGAACTGAAGATAAAACATGCAGATTACCTGCTGGAGGTGAGGGATTAGATCAAAAAATAAAGAAGAGGAGGTCTGTCGGAACAGTAGGAAACAGAGTTATAACTGGTGAGAGGGACATAAAACGAGCTACCCTTCCAAATGGAAATGCTGATTTGAAGATGCGATTTAATGATGCTCAGGGTTTCAGATTGAAGTCAATTCCTGGATCTATTGGAATCAACAAATCTGAGGGCTCTTCAGAGCCTAATATCACAGGTGTGCGTGTGATGCTTACAGATGAGCAAGGTGCCTCTCTTCACAGGGAAAACATAGCTGACCAGAGCGTTGTAGCAAAAGGAAACAACAGAGCAAACACTCAAGAGGAGCCAACAAGCAGCCCTAGCCCAACAATTAAAAACAAGGTATCTCGGGCACCAAGAACGGGTTCAGTTAGTGCGCTAGAGTTGTCTAACATCCAGTCTCCTGCCGGAAGTTTCCCAGGTTCTTCTATACATCCAATGACCCAGTGGGGTGGACAAAGACCACCTAAAAATTCACGCACACGAAGAGTGAAAGTAGTTTCTCCTGCCTCACGCAACCTTGAAGTTCAGGTCTCATCTGAAGGCTGTCTAACTTCTGATTTCAATGTTAAAGCTTCTTCTGTTGGCAACGATGGGTTCCCACTAGCTAGCAGTGTAGACAACAGTACACCAAAATACAAAAGACCACCAGATGATATTTTTTCTCCCTTTGGATTATCTGAAAGTGAAGAATCTGGTGCTGGTGAAAACAAAATAAAAGAGAAAGGGGTGAATGCCAGTGACTTTGCTTTGGCTGCTGATAGGGATGGATCTCCTCTGTTACAAATGAGGAAGAATAAAATGCCAAGAGATGAATCAGGAGATGGTATGCAGAGACAAGGAAGACCTGGAAGGAATTTATCGTCAATAAGACCAGGCCTTCCATTAGGGAGGGAGAAGTCTGAGAATGTACCTATACTGAAGCCAGTTCAGGAAACAAGGCCTAATGATAAGAATAAAACCAAATATGGGCGTCCTCCTTCAAAAAACCAGAAAGAACGCAAGGTTTTGACTCGTGTAGGGAAGCGGCTGAACATTGGTTCTCCTGATTTTGGAGGTAGTGGGGTATCGGATGATGATCGTGAAGAATTGTATAAAGCTGCTAATGCTGCTCTTAATGCAAGCACTTTTGCTTCAGGTCCATTTTGGAGTAAAATGGAGTGTATTTTTACTCCCATCAGCTCGGATGATGCATCTTTTGTGAAGGAACAGCTCAATATTGCTGACGATTTGGAGAAAAGTTCATCTCATATGTTTGCCATTGATCATGATACGTTGGGTGTTGTTATAAATAATAAAACCACTCAAGGTTCACAGGGTAGAAGGAGAAGCCACTTTGATGAACCCAAGTCGGAGGCTGTAGGTGGGAGGAATGACAAGGTTACCCCATTATTCCAAAGACTTCTTTGTGCTCTAATTGAAGAAGACGAAAATGAAGAATCATACCAGCAAAGTGAAGCAAAGAATATATCTAGACAGTGTGCTAGTGATGATTCTCACTGTGGTTCTTGTAATCAAGTCGATTTTGAACCGAAAGACCGGGATAGAATGGAATCTGAAGTTGAATCGGAGGTGGATTTCCATATTCAGAAGAATTGCATATTGGACAGACTATCTTGCGATAAGAGTACTGCATCGAACACATTTAGGTACCCAGACACATCCAGTCCTTTACAAAGCACCGGAGTTTGGCAGGGAGATGAAGAATTGTCCATCTCTGATATCACTCACACCAGTGAAATATGTTCAAATGATCTTGATCAACTGCAACCTGAATTATATAATCCTAGTTTTCCTTCTCCTGATGGTGACTATCAGCTTATGTCTCTGGATGACAGACTGCTGCTTGAGTTGCAGAGCATTGGTTTATATCCAGAAATAATGCCTGATTTAGCAGAGCAAGATGAAGTTATAATTCAAGATATTGTGGAACTTGAGAAAGCTCTATATGAACAGAATGGAAGGAAGAAGAGAAACTTGGACAAAATTGATGGAGCTATTCTCACAGGGAGGGACATGGAAAAACGGAAGATTGAGCAAGCTGCATTTGACCAACTTACCGAAATGGCTTACAGAAAGAGATTGGCATGCCGTGAAAGCAGAAATTCAAAAAGCACTGTTCAGAAGGTTTCAACACAAGTTGCTTTGGCTTTTATTAAACGTACTCTTGCAAGATGTAGAAGATATGAAGAAGCTGGCGTTAGCTGCTTTAGTGAACCGACTCTCCAAAATATAATGTTTTCCCCTCATTCACGCGAGAATGGTGCACGACAGGCAGATTGCATTGTTTCTGGCACAGCCAGTAATACATGTAGCAAAGCTTTGCATCAAATTGAAGCGAGAAAATTAGGTGCTGTTTCGAGTGCTTCTGAGAAATATGATAGTCAGCTGGATTATGCAGACAGGGGACTGGTTGATTCTTTTCAAAGTTCAATCCACTCATCAGAACAATTGTTATCCCAGAATGGGTCTGTGATGATCAAGGGGAAGAAGAGGGAAATGCTGGTCAATGGTGTCGTCAATGGTGTCGTCAATGGTTCTTCAAGAACATCAAATCTTGACGGTGCTGTTCCTATTGGAGTCAAAGGAAAGAGAAGTGAGAGGGATAGAAATCAGACCCGGGATCAGTCCAGACCAAATTCTAATTCCAGAGCTGGTTGCCTGTCATTGGACAGTAACAAAAATGAGAACAAGCCAAAAGCTAAGCCAAAGCAAAAAAGTACTGCTGCTGGACATGATAGATTCATGGAAGCAAAGGAATCTGTGTGTATACCTATTTATGATTCTAGTCTATCTGTGGCTAATGCAAGCAACAATGGCAGTAAAGACGGGGCATCATTATCTGGTAACCAGGACACTTCTCAAGTAAAGGAATCCACTGACTTGGAGAATTTGCCACTACCTGATTTAAGTTCAATAGACGAATTTGGTGTATCTGGTGAACTTGACGGGCCACAAGATCTTGGTTCTTGGCTGAACTTTGATGACGATGGTTTGCAAGAACATGATTGTATTATGGGCCTTGAAATTCCAATGGACGACCTATCGGAATTGAATATGCTTATGTGA

Protein sequence

>Msa0601410

MLSSVSNLNGSSTSGITSSDMPPLPQCLPLDLITVGNKKYTGELKRVLGVPPGNTSEDHSFGVPHPKSMGPGASGELKHIKESVQDASKKARDRSKMLEENISKLDGYTEALNSKKRQRNDLSSERGSGVKLTKMGSQIHKIPNDNMTPREVKTPKSMLNKRIRTSVADMREESRSASIGRQQMLTEKDGNLIQTLSGGSVRTEDKTCRLPAGGEGLDQKIKKRRSVGTVGNRVITGERDIKRATLPNGNADLKMRFNDAQGFRLKSIPGSIGINKSEGSSEPNITGVRVMLTDEQGASLHRENIADQSVVAKGNNRANTQEEPTSSPSPTIKNKVSRAPRTGSVSALELSNIQSPAGSFPGSSIHPMTQWGGQRPPKNSRTRRVKVVSPASRNLEVQVSSEGCLTSDFNVKASSVGNDGFPLASSVDNSTPKYKRPPDDIFSPFGLSESEESGAGENKIKEKGVNASDFALAADRDGSPLLQMRKNKMPRDESGDGMQRQGRPGRNLSSIRPGLPLGREKSENVPILKPVQETRPNDKNKTKYGRPPSKNQKERKVLTRVGKRLNIGSPDFGGSGVSDDDREELYKAANAALNASTFASGPFWSKMECIFTPISSDDASFVKEQLNIADDLEKSSSHMFAIDHDTLGVVINNKTTQGSQGRRRSHFDEPKSEAVGGRNDKVTPLFQRLLCALIEEDENEESYQQSEAKNISRQCASDDSHCGSCNQVDFEPKDRDRMESEVESEVDFHIQKNCILDRLSCDKSTASNTFRYPDTSSPLQSTGVWQGDEELSISDITHTSEICSNDLDQLQPELYNPSFPSPDGDYQLMSLDDRLLLELQSIGLYPEIMPDLAEQDEVIIQDIVELEKALYEQNGRKKRNLDKIDGAILTGRDMEKRKIEQAAFDQLTEMAYRKRLACRESRNSKSTVQKVSTQVALAFIKRTLARCRRYEEAGVSCFSEPTLQNIMFSPHSRENGARQADCIVSGTASNTCSKALHQIEARKLGAVSSASEKYDSQLDYADRGLVDSFQSSIHSSEQLLSQNGSVMIKGKKREMLVNGVVNGVVNGSSRTSNLDGAVPIGVKGKRSERDRNQTRDQSRPNSNSRAGCLSLDSNKNENKPKAKPKQKSTAAGHDRFMEAKESVCIPIYDSSLSVANASNNGSKDGASLSGNQDTSQVKESTDLENLPLPDLSSIDEFGVSGELDGPQDLGSWLNFDDDGLQEHDCIMGLEIPMDDLSELNMLM*