AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0756530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0756530 MtrunA17_Chr5g0401661 93.158 190 8 1 1 190 122 306 4.66e-119 352
Msa0756530 MtrunA17_Chr5g0401671 84.343 198 22 1 2 190 21 218 1.14e-101 305
Msa0756530 MtrunA17_Chr4g0053651 61.257 191 62 4 2 190 21 201 5.26e-67 215
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0756530 AT5G67320.1 57.143 119 42 1 2 111 21 139 6.76e-38 138

Find 36 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCACCTGTTCAATGGATT+TGG 0.300570 5_2:+10851901 Msa0756530:CDS
TCAGAAGGGACTACAGTTCT+TGG 0.325341 5_2:+10851315 Msa0756530:CDS
ATGCCCCATTGATGGAAATA+TGG 0.327468 5_2:+10851264 Msa0756530:CDS
GATCAAGAGGATAAGGTTAA+TGG 0.328518 5_2:+10851763 Msa0756530:CDS
CATGAGGAGGATGGAGCATT+TGG 0.337617 5_2:+10851874 Msa0756530:CDS
TGGTACCATATTTCCATCAA+TGG 0.444036 5_2:-10851269 None:intergenic
GGAGGTAACCACCTGTTCAA+TGG 0.448820 5_2:+10851895 Msa0756530:CDS
GTAAACCAAATCCATTGAAC+AGG 0.451434 5_2:-10851906 None:intergenic
GGTCTCAGATCAAGAGGATA+AGG 0.468270 5_2:+10851756 Msa0756530:CDS
ATTAACAAATGCCCCATTGA+TGG 0.468955 5_2:+10851256 Msa0756530:CDS
GGTACCATATTTCCATCAAT+GGG 0.470825 5_2:-10851268 None:intergenic
AAATCAGATAAGTAGAGAAA+TGG 0.476182 5_2:+10851735 Msa0756530:CDS
AGAAAAGGAAACACATGAAA+GGG 0.500923 5_2:+10851648 Msa0756530:CDS
AAGGGAGAAAGAATGTGAAA+AGG 0.516470 5_2:+10851666 Msa0756530:CDS
TCTTGTTACATTTGTTCAGA+AGG 0.525010 5_2:+10851300 Msa0756530:CDS
CTTGTTACATTTGTTCAGAA+GGG 0.539198 5_2:+10851301 Msa0756530:CDS
GGGACTACAGTTCTTGGAGA+TGG 0.540425 5_2:+10851321 Msa0756530:CDS
GAGGAGGATGGAGCATTTGG+AGG 0.547619 5_2:+10851877 Msa0756530:CDS
TAGAAAAGGAAACACATGAA+AGG 0.554994 5_2:+10851647 Msa0756530:CDS
GCGTGGACTGACAATAGAAA+AGG 0.559883 5_2:+10851633 Msa0756530:CDS
AAGAAGAAGAAAACTACAGA+AGG 0.560530 5_2:+10851573 Msa0756530:CDS
AAGGTAAAGCATGAGGAGGA+TGG 0.574568 5_2:+10851865 Msa0756530:CDS
ATGTGAAAAGGATAAAGAGA+AGG 0.584673 5_2:+10851678 Msa0756530:CDS
TGGAAATATGGTACCACCAG+GGG 0.585884 5_2:+10851276 Msa0756530:CDS
AACCAAATCCATTGAACAGG+TGG 0.590080 5_2:-10851903 None:intergenic
AGAAATGGTCTCAGATCAAG+AGG 0.591903 5_2:+10851750 Msa0756530:CDS
TAAGGTTAAGGTAAAGCATG+AGG 0.592605 5_2:+10851858 Msa0756530:CDS
ACAAATGTAACAAGAGCCCC+TGG 0.608820 5_2:-10851292 None:intergenic
GATGGAAATATGGTACCACC+AGG 0.611394 5_2:+10851274 Msa0756530:CDS
TTTGTGTTTGGGAATGAGGG+TGG 0.611504 5_2:+10851232 Msa0756530:CDS
GGTTAAGGTAAAGCATGAGG+AGG 0.615307 5_2:+10851861 Msa0756530:CDS
AAAGAGCATGATGGTGAGCG+TGG 0.634501 5_2:+10851616 Msa0756530:CDS
AGAAGAAGAAAACTACAGAA+GGG 0.645406 5_2:+10851574 Msa0756530:CDS
ATGGAAATATGGTACCACCA+GGG 0.696196 5_2:+10851275 Msa0756530:CDS
GTACCATATTTCCATCAATG+GGG 0.758288 5_2:-10851267 None:intergenic
AATGTAACAAGAGCCCCTGG+TGG 0.782169 5_2:-10851289 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GGTTATTATTATATTTTTAA+TGG + chr5_2:10847483-10847502 Msa0756530:intron 10.0%
!!! ATTATATTTTTAATGGAAAA+TGG + chr5_2:10847490-10847509 Msa0756530:intron 10.0%
!!! TTTTTTTATAAAAAAATGGA+GGG - chr5_2:10847634-10847653 None:intergenic 10.0%
!!! TTTTTTTTATAAAAAAATGG+AGG - chr5_2:10847635-10847654 None:intergenic 10.0%
!!! GCATTTTTTTTATAAAAAAA+TGG - chr5_2:10847638-10847657 None:intergenic 10.0%
!! TAATTAAATATGATAAAAGT+TGG + chr5_2:10848196-10848215 Msa0756530:intron 10.0%
!! TAAAATTACAAAAAAATTCA+AGG - chr5_2:10848377-10848396 None:intergenic 10.0%
!! AGAAAAATATATAAATAAAG+GGG + chr5_2:10848765-10848784 Msa0756530:intron 10.0%
!!! TATAATGAATTTATTTTTAG+TGG + chr5_2:10849642-10849661 Msa0756530:intron 10.0%
!!! ATAATGAATTTATTTTTAGT+GGG + chr5_2:10849643-10849662 Msa0756530:intron 10.0%
!!! TATAATATGTACTATAATTT+TGG - chr5_2:10850582-10850601 None:intergenic 10.0%
!!! TAGACTAAATTTTTTAACAA+AGG + chr5_2:10847221-10847240 Msa0756530:intron 15.0%
!!! AGTATTTTAACATAAGAAAA+AGG + chr5_2:10847383-10847402 Msa0756530:intron 15.0%
!!! AAATTAATTTGTTTTCTCAT+TGG + chr5_2:10847462-10847481 Msa0756530:intron 15.0%
!! ATTCTATTTAAAGATTAATC+AGG - chr5_2:10847811-10847830 None:intergenic 15.0%
!!! GATGTTAAAATAATTTTCAT+TGG + chr5_2:10848082-10848101 Msa0756530:intron 15.0%
!!! ATTTACATTTAATTTCTCTT+TGG + chr5_2:10848149-10848168 Msa0756530:intron 15.0%
!! CGATGTATAAATATTAATTA+TGG + chr5_2:10848560-10848579 Msa0756530:intron 15.0%
!! AAAATTGTGTCAATTAAATT+GGG - chr5_2:10848728-10848747 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr5_2:10848831-10848850 Msa0756530:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + chr5_2:10848832-10848851 Msa0756530:intron 15.0%
!!! TAATGAATTTATTTTTAGTG+GGG + chr5_2:10849644-10849663 Msa0756530:intron 15.0%
!! ATATGATAATTAGTCAAAAT+TGG + chr5_2:10849885-10849904 Msa0756530:intron 15.0%
!! TATGATAATTAGTCAAAATT+GGG + chr5_2:10849886-10849905 Msa0756530:intron 15.0%
!! TATCATATATAAAATTAGAG+TGG - chr5_2:10850477-10850496 None:intergenic 15.0%
!! ATATTATATAGTAAATAGCT+AGG + chr5_2:10850594-10850613 Msa0756530:intron 15.0%
!!! GTATTTTTATTTTACTACAA+AGG + chr5_2:10851101-10851120 Msa0756530:intron 15.0%
!!! TATTTTCCATATTTATAAGA+AGG + chr5_2:10851130-10851149 Msa0756530:intron 15.0%
!! ACAGTATAGAATAAAAATCT+TGG - chr5_2:10847119-10847138 None:intergenic 20.0%
!!! TTTTTCCGTAGTTTATATTA+AGG + chr5_2:10847141-10847160 Msa0756530:intron 20.0%
!! CAATACCTTAATATAAACTA+CGG - chr5_2:10847149-10847168 None:intergenic 20.0%
!!! AGATAAAATATATTCTGAAG+AGG + chr5_2:10847272-10847291 Msa0756530:intron 20.0%
!! TAATTTAAACATATATTGGG+AGG + chr5_2:10847411-10847430 Msa0756530:intron 20.0%
!!! TTTTAAACGATATTGCATAA+TGG + chr5_2:10847700-10847719 Msa0756530:intron 20.0%
!!! GTATGTTTTGCTTATAATTT+GGG + chr5_2:10848218-10848237 Msa0756530:intron 20.0%
!!! CTTTTACTTATAATTTGAGA+CGG + chr5_2:10848259-10848278 Msa0756530:intron 20.0%
!! TCCTATATCTATTCTTATTA+GGG - chr5_2:10848504-10848523 None:intergenic 20.0%
!! TTCCTATATCTATTCTTATT+AGG - chr5_2:10848505-10848524 None:intergenic 20.0%
!! AAAATAGTACTATAGAGTAT+TGG + chr5_2:10848650-10848669 Msa0756530:intron 20.0%
!! CAAAATTGTGTCAATTAAAT+TGG - chr5_2:10848729-10848748 None:intergenic 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + chr5_2:10848864-10848883 Msa0756530:intron 20.0%
!! GTTGTATTGAAAATTGAAAT+GGG + chr5_2:10848865-10848884 Msa0756530:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr5_2:10848901-10848920 Msa0756530:intron 20.0%
!! ATATAAAACACAATGATGTT+TGG - chr5_2:10850063-10850082 None:intergenic 20.0%
!!! TCAATATTTTCTGCTATATT+TGG + chr5_2:10850424-10850443 Msa0756530:intron 20.0%
!!! CAATATTTTCTGCTATATTT+GGG + chr5_2:10850425-10850444 Msa0756530:intron 20.0%
!! TACAAACAGTAAATAAGTTA+AGG - chr5_2:10850880-10850899 None:intergenic 20.0%
!!! TTAACCTTATCTTCTTTTTT+AGG - chr5_2:10851805-10851824 None:intergenic 20.0%
!! AAAAAAGAAGATAAGGTTAA+TGG + chr5_2:10851805-10851824 Msa0756530:CDS 20.0%
!! TAAAAAAGAAGATAAGGTTA+AGG + chr5_2:10851804-10851823 Msa0756530:CDS 20.0%
!!! ATGTAACCTTTGAGATAAAA+AGG + chr5_2:10847543-10847562 Msa0756530:intron 25.0%
! GAGATTGATGTGATATAAAA+AGG + chr5_2:10847572-10847591 Msa0756530:intron 25.0%
! TGATATAAAAAGGAAGATGA+AGG + chr5_2:10847582-10847601 Msa0756530:intron 25.0%
!!! TATTGCATAATGGTCTTTTT+TGG + chr5_2:10847710-10847729 Msa0756530:intron 25.0%
! AAGTGTATGAAGATGAATTT+AGG - chr5_2:10847940-10847959 None:intergenic 25.0%
! TTTCTATGAAACTTATTCCA+AGG - chr5_2:10848062-10848081 None:intergenic 25.0%
!! GGTATGTTTTGCTTATAATT+TGG + chr5_2:10848217-10848236 Msa0756530:intron 25.0%
! AGGATATAAGAAAGATAAGA+AGG - chr5_2:10848357-10848376 None:intergenic 25.0%
! TCCCTAATAAGAATAGATAT+AGG + chr5_2:10848500-10848519 Msa0756530:intron 25.0%
!!! TTTGAAATTTTACACCCAAA+TGG + chr5_2:10848588-10848607 Msa0756530:intron 25.0%
! TATATAAATAAAGGGGAAAG+TGG + chr5_2:10848772-10848791 Msa0756530:intron 25.0%
! GAAAGTGGAATATATTGTAT+TGG + chr5_2:10848787-10848806 Msa0756530:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr5_2:10848900-10848919 Msa0756530:intron 25.0%
!!! CTTTTTTTTAGAAAATGGGT+CGG + chr5_2:10848905-10848924 Msa0756530:intron 25.0%
! TTAAAAATATACCTAGTGCA+AGG + chr5_2:10849023-10849042 Msa0756530:intron 25.0%
! AAGGATGTGAATTAAAAATC+TGG + chr5_2:10849050-10849069 Msa0756530:intron 25.0%
! AAAAATCTGGATTATAGAAG+TGG + chr5_2:10849063-10849082 Msa0756530:intron 25.0%
! AAATACTACCCCAATATATT+AGG - chr5_2:10849096-10849115 None:intergenic 25.0%
! TAAGTATTTAACGTTTGATC+AGG + chr5_2:10849120-10849139 Msa0756530:intron 25.0%
! GTAACAACAATAAGATAAAC+AGG + chr5_2:10849229-10849248 Msa0756530:intron 25.0%
! TTAGTTTCTGATATGAATTG+AGG + chr5_2:10849322-10849341 Msa0756530:intron 25.0%
! ATTCTCAATACAGATTCAAT+AGG - chr5_2:10849475-10849494 None:intergenic 25.0%
! AGAAAATAAGGAAAGAAACA+CGG + chr5_2:10849602-10849621 Msa0756530:intron 25.0%
!!! TTTTTTTTATGCCCATACAT+TGG + chr5_2:10849696-10849715 Msa0756530:intron 25.0%
! ATATTAGGTCAATCTAAACT+TGG - chr5_2:10850165-10850184 None:intergenic 25.0%
!! TTTGGGATATATTGTAACTT+AGG + chr5_2:10850442-10850461 Msa0756530:intron 25.0%
! CATTTGTAAGCTTGAATTTA+CGG + chr5_2:10850937-10850956 Msa0756530:intron 25.0%
! TTTAACACAACTTCAACAAT+GGG - chr5_2:10851008-10851027 None:intergenic 25.0%
! ATTGTTGAAGTTGTGTTAAA+GGG + chr5_2:10851008-10851027 Msa0756530:intron 25.0%
! TTATGGCCTTCTTATAAATA+TGG - chr5_2:10851139-10851158 None:intergenic 25.0%
! GTATGAAAAGCTTAAAAAGA+CGG - chr5_2:10851427-10851446 None:intergenic 25.0%
!!! TTTTTAAGCTTTTCATACCT+GGG + chr5_2:10851429-10851448 Msa0756530:intron 25.0%
!! CTACTTATCTGATTTTCATT+TGG - chr5_2:10851730-10851749 None:intergenic 25.0%
! AAATCAGATAAGTAGAGAAA+TGG + chr5_2:10851735-10851754 Msa0756530:CDS 25.0%
! AGATCCTAAAAAAGAAGATA+AGG + chr5_2:10851798-10851817 Msa0756530:CDS 25.0%
! AGATGCTAAAAAAGAAGATA+AGG + chr5_2:10851840-10851859 Msa0756530:CDS 25.0%
GAAAATGTCACAAACTGATT+TGG + chr5_2:10846977-10846996 Msa0756530:intron 30.0%
!! GGTACTATTTCTGTTAAGAT+TGG + chr5_2:10846998-10847017 Msa0756530:intron 30.0%
CTGTTAAGATTGGATTTGAT+TGG + chr5_2:10847008-10847027 Msa0756530:intron 30.0%
!! TGTGATCTATTTTTCACACA+AGG + chr5_2:10847353-10847372 Msa0756530:intron 30.0%
!! GTGATCTATTTTTCACACAA+GGG + chr5_2:10847354-10847373 Msa0756530:intron 30.0%
! TGCATACCTTTTTATCTCAA+AGG - chr5_2:10847552-10847571 None:intergenic 30.0%
! TTACTTATAATTTGAGACGG+AGG + chr5_2:10848262-10848281 Msa0756530:intron 30.0%
! TACTTATAATTTGAGACGGA+GGG + chr5_2:10848263-10848282 Msa0756530:intron 30.0%
TGAAGTCACAAATTAGGTTT+AGG - chr5_2:10848480-10848499 None:intergenic 30.0%
! CTTTTGTAAACACACCATTT+GGG - chr5_2:10848605-10848624 None:intergenic 30.0%
! TCTTTTGTAAACACACCATT+TGG - chr5_2:10848606-10848625 None:intergenic 30.0%
TTGTGTCAATTAAATTGGGA+CGG - chr5_2:10848724-10848743 None:intergenic 30.0%
!! GAGGGAGTATTTAAGAAAAT+AGG + chr5_2:10848941-10848960 Msa0756530:intron 30.0%
TATTTAAGAAAATAGGCTCG+TGG + chr5_2:10848948-10848967 Msa0756530:intron 30.0%
GAATCTGTATTGAGAATCTA+TGG + chr5_2:10849478-10849497 Msa0756530:intron 30.0%
GAGAAGAGAGAAAGAAAATA+AGG + chr5_2:10849590-10849609 Msa0756530:intron 30.0%
TTCGCAACATACAACATATT+AGG - chr5_2:10850180-10850199 None:intergenic 30.0%
!!! GTGTCTTAATTGGTTAGTTT+TGG + chr5_2:10850688-10850707 Msa0756530:intron 30.0%
ATAGATCAAATACGCCATAA+TGG + chr5_2:10850762-10850781 Msa0756530:intron 30.0%
TGGTATATGATAGACCATTA+TGG - chr5_2:10850779-10850798 None:intergenic 30.0%
CTTTAACACAACTTCAACAA+TGG - chr5_2:10851009-10851028 None:intergenic 30.0%
CATTGTTGAAGTTGTGTTAA+AGG + chr5_2:10851007-10851026 Msa0756530:intron 30.0%
! TTAAAGGGATCATATTGACT+AGG + chr5_2:10851023-10851042 Msa0756530:intron 30.0%
TCTTGTTACATTTGTTCAGA+AGG + chr5_2:10851300-10851319 Msa0756530:CDS 30.0%
CTTGTTACATTTGTTCAGAA+GGG + chr5_2:10851301-10851320 Msa0756530:CDS 30.0%
!! CTTTTTAAGCTTTTCATACC+TGG + chr5_2:10851428-10851447 Msa0756530:intron 30.0%
! GGTTTCATGTTGATAAATGT+TGG + chr5_2:10851450-10851469 Msa0756530:intron 30.0%
! TTTTTCGTTCTTACAACCTT+TGG + chr5_2:10851504-10851523 Msa0756530:CDS 30.0%
! TCTTTTGTGATAAGATCCAA+AGG - chr5_2:10851523-10851542 None:intergenic 30.0%
AAGAAGAAGAAAACTACAGA+AGG + chr5_2:10851573-10851592 Msa0756530:CDS 30.0%
AGAAGAAGAAAACTACAGAA+GGG + chr5_2:10851574-10851593 Msa0756530:CDS 30.0%
ACTACAGAAGGGTAAAAATA+AGG + chr5_2:10851585-10851604 Msa0756530:CDS 30.0%
TAGAAAAGGAAACACATGAA+AGG + chr5_2:10851647-10851666 Msa0756530:CDS 30.0%
AGAAAAGGAAACACATGAAA+GGG + chr5_2:10851648-10851667 Msa0756530:CDS 30.0%
ATGTGAAAAGGATAAAGAGA+AGG + chr5_2:10851678-10851697 Msa0756530:CDS 30.0%
!! TCTATTTTTCACACAAGGGA+AGG + chr5_2:10847358-10847377 Msa0756530:intron 35.0%
!! ATGGAAAATGGTTGATAGAC+TGG + chr5_2:10847502-10847521 Msa0756530:intron 35.0%
AATTAAACGACATTGCAACG+TGG - chr5_2:10847848-10847867 None:intergenic 35.0%
! TGAATCACTGTCTGCAATTT+TGG + chr5_2:10847877-10847896 Msa0756530:intron 35.0%
ATAGTTTCTTGTGTCATCCT+TGG + chr5_2:10848042-10848061 Msa0756530:intron 35.0%
! GGATTGAAGTATCTAAAGTG+AGG - chr5_2:10848336-10848355 None:intergenic 35.0%
ACTAAATCACACCTTCAACT+TGG + chr5_2:10848449-10848468 Msa0756530:intron 35.0%
TAGGGATGAAGTCACAAATT+AGG - chr5_2:10848486-10848505 None:intergenic 35.0%
TTGAAATGGGTCAGTTACTT+TGG + chr5_2:10848878-10848897 Msa0756530:intron 35.0%
! TGAAATGGGTCAGTTACTTT+GGG + chr5_2:10848879-10848898 Msa0756530:intron 35.0%
ATCTGGATTATAGAAGTGGA+AGG + chr5_2:10849067-10849086 Msa0756530:intron 35.0%
TCTGGATTATAGAAGTGGAA+GGG + chr5_2:10849068-10849087 Msa0756530:intron 35.0%
!! ATTAAAGGCACCAATGATTG+AGG + chr5_2:10849158-10849177 Msa0756530:intron 35.0%
!! TTAAAGGCACCAATGATTGA+GGG + chr5_2:10849159-10849178 Msa0756530:intron 35.0%
TTCTGATATGAATTGAGGTC+AGG + chr5_2:10849327-10849346 Msa0756530:intron 35.0%
TCTGATATGAATTGAGGTCA+GGG + chr5_2:10849328-10849347 Msa0756530:intron 35.0%
TCGATTCTGTAAGTGAAAAG+AGG + chr5_2:10849373-10849392 Msa0756530:intron 35.0%
AAATAAGGAAAGAAACACGG+TGG + chr5_2:10849605-10849624 Msa0756530:intron 35.0%
! ACAAAGTGTTCAATGGAACT+GGG - chr5_2:10849727-10849746 None:intergenic 35.0%
! TACAAAGTGTTCAATGGAAC+TGG - chr5_2:10849728-10849747 None:intergenic 35.0%
ATATGTGCTTCACAGCTATT+TGG + chr5_2:10849861-10849880 Msa0756530:intron 35.0%
TAGTCAAAATTGGGTTCAAG+TGG + chr5_2:10849895-10849914 Msa0756530:intron 35.0%
AGAACCTAAGTTCGATTTCT+GGG + chr5_2:10849951-10849970 Msa0756530:intron 35.0%
AGGTTACCACAAAAAAGCTT+AGG + chr5_2:10850033-10850052 Msa0756530:intron 35.0%
TGTTGTATGTTGCGAAACTT+TGG + chr5_2:10850184-10850203 Msa0756530:intron 35.0%
!!! TTGTGTTGTGTTTTAGTCAG+AGG + chr5_2:10850656-10850675 Msa0756530:intron 35.0%
TACCATTAAACTTTGAGCCA+CGG + chr5_2:10850794-10850813 Msa0756530:intron 35.0%
! GTTTGAGGCAATGAATGAAA+TGG + chr5_2:10850818-10850837 Msa0756530:intron 35.0%
! ATCATATTGACTAGGTCACT+AGG + chr5_2:10851031-10851050 Msa0756530:intron 35.0%
! TGAATTGGTTTACATGCTAC+TGG + chr5_2:10851178-10851197 Msa0756530:intron 35.0%
!! TCTCATTCTGCTTTTGTGTT+TGG + chr5_2:10851220-10851239 Msa0756530:CDS 35.0%
!! CTCATTCTGCTTTTGTGTTT+GGG + chr5_2:10851221-10851240 Msa0756530:CDS 35.0%
ATTAACAAATGCCCCATTGA+TGG + chr5_2:10851256-10851275 Msa0756530:CDS 35.0%
GTACCATATTTCCATCAATG+GGG - chr5_2:10851270-10851289 None:intergenic 35.0%
GGTACCATATTTCCATCAAT+GGG - chr5_2:10851271-10851290 None:intergenic 35.0%
TGGTACCATATTTCCATCAA+TGG - chr5_2:10851272-10851291 None:intergenic 35.0%
CATTTATCAACATGAAACCC+AGG - chr5_2:10851449-10851468 None:intergenic 35.0%
! GAATCTGAAAAAGAGCATGA+TGG + chr5_2:10851607-10851626 Msa0756530:CDS 35.0%
AAGGGAGAAAGAATGTGAAA+AGG + chr5_2:10851666-10851685 Msa0756530:CDS 35.0%
GATCAAGAGGATAAGGTTAA+TGG + chr5_2:10851763-10851782 Msa0756530:CDS 35.0%
TAAGGTTAAGGTAAAGCATG+AGG + chr5_2:10851858-10851877 Msa0756530:CDS 35.0%
GTAAACCAAATCCATTGAAC+AGG - chr5_2:10851909-10851928 None:intergenic 35.0%
GGCTAAAGATCTTAGTCTCT+CGG - chr5_2:10847048-10847067 None:intergenic 40.0%
AAGGAAGATGAAGGTAGAAG+CGG + chr5_2:10847591-10847610 Msa0756530:intron 40.0%
TAAAAAAATGGAGGGAACCG+TGG - chr5_2:10847626-10847645 None:intergenic 40.0%
AATCACGACCAATCAATCGT+TGG - chr5_2:10847913-10847932 None:intergenic 40.0%
! TTTAGGTGAGACCAAGTTGA+AGG - chr5_2:10848463-10848482 None:intergenic 40.0%
TGTCAATTAAATTGGGACGG+AGG - chr5_2:10848721-10848740 None:intergenic 40.0%
AGAAAATGGGTCGGTTATTC+CGG + chr5_2:10848914-10848933 Msa0756530:intron 40.0%
CTGGATTATAGAAGTGGAAG+GGG + chr5_2:10849069-10849088 Msa0756530:intron 40.0%
TGGAAGGGGACCTAATATAT+TGG + chr5_2:10849083-10849102 Msa0756530:intron 40.0%
GGAAGGGGACCTAATATATT+GGG + chr5_2:10849084-10849103 Msa0756530:intron 40.0%
GAAGGGGACCTAATATATTG+GGG + chr5_2:10849085-10849104 Msa0756530:intron 40.0%
AGAATCTATGGTAGCATAGC+TGG + chr5_2:10849490-10849509 Msa0756530:intron 40.0%
! NGGGTGTACAAAGTGTTCAA+TGG - chr5_2:10849734-10849753 None:intergenic 40.0%
TCACCAAGGATGAATTGTTC+AGG + chr5_2:10849928-10849947 Msa0756530:intron 40.0%
TCTCCTGAACAATTCATCCT+TGG - chr5_2:10849934-10849953 None:intergenic 40.0%
GAGAACCTAAGTTCGATTTC+TGG + chr5_2:10849950-10849969 Msa0756530:intron 40.0%
! TCCTTTCTCTGAAAACTGGA+AGG + chr5_2:10850013-10850032 Msa0756530:intron 40.0%
! ACCTTCCAGTTTTCAGAGAA+AGG - chr5_2:10850017-10850036 None:intergenic 40.0%
!!! GGTACACCTAAGCTTTTTTG+TGG - chr5_2:10850042-10850061 None:intergenic 40.0%
GCGAAGCTATGTGTCTTAAT+TGG + chr5_2:10850678-10850697 Msa0756530:intron 40.0%
! AAGCCTTATCGCACTAAGTA+GGG + chr5_2:10850731-10850750 Msa0756530:intron 40.0%
! AGAAGCTTTTCTCACTCTAC+TGG - chr5_2:10851062-10851081 None:intergenic 40.0%
TGCTTTGCACGTTCATGTTA+TGG - chr5_2:10851156-10851175 None:intergenic 40.0%
AACGTGCAAAGCAACTGAAT+TGG + chr5_2:10851163-10851182 Msa0756530:intron 40.0%
! TGCTTTTGTGTTTGGGAATG+AGG + chr5_2:10851228-10851247 Msa0756530:CDS 40.0%
! GCTTTTGTGTTTGGGAATGA+GGG + chr5_2:10851229-10851248 Msa0756530:CDS 40.0%
ATGCCCCATTGATGGAAATA+TGG + chr5_2:10851264-10851283 Msa0756530:CDS 40.0%
ATGGAAATATGGTACCACCA+GGG + chr5_2:10851275-10851294 Msa0756530:CDS 40.0%
AGAAATGGTCTCAGATCAAG+AGG + chr5_2:10851750-10851769 Msa0756530:CDS 40.0%
! AACCACCTGTTCAATGGATT+TGG + chr5_2:10851901-10851920 Msa0756530:CDS 40.0%
AACCAAATCCATTGAACAGG+TGG - chr5_2:10851906-10851925 None:intergenic 40.0%
GAAAATGGGTCGGTTATTCC+GGG + chr5_2:10848915-10848934 Msa0756530:intron 45.0%
GCTATTACGACGACTTCGAA+TGG + chr5_2:10848977-10848996 Msa0756530:intron 45.0%
ATACCTAGTGCAAGGCTGTA+AGG + chr5_2:10849031-10849050 Msa0756530:intron 45.0%
TGCACAAAGCCCTCAATCAT+TGG - chr5_2:10849171-10849190 None:intergenic 45.0%
TCTATGGTAGCATAGCTGGT+CGG + chr5_2:10849494-10849513 Msa0756530:intron 45.0%
TAGCTGGTCGGAAATCGAAT+CGG + chr5_2:10849506-10849525 Msa0756530:intron 45.0%
TCGAATCGGGGAAGAAGAAA+AGG + chr5_2:10849520-10849539 Msa0756530:intron 45.0%
CGAATCGGGGAAGAAGAAAA+GGG + chr5_2:10849521-10849540 Msa0756530:intron 45.0%
AGAAGAAAAGGGAAGTCCGA+TGG + chr5_2:10849532-10849551 Msa0756530:intron 45.0%
ACTGGGTCTCTCCAATGTAT+GGG - chr5_2:10849710-10849729 None:intergenic 45.0%
AACTGGGTCTCTCCAATGTA+TGG - chr5_2:10849711-10849730 None:intergenic 45.0%
GTGGTTAATGAGCTTCACCA+AGG + chr5_2:10849914-10849933 Msa0756530:intron 45.0%
! ACCTAAGTTCGATTTCTGGG+TGG + chr5_2:10849954-10849973 Msa0756530:intron 45.0%
TCCACCCAGAAATCGAACTT+AGG - chr5_2:10849958-10849977 None:intergenic 45.0%
GACCGAACTTCAGATTACCA+GGG + chr5_2:10849990-10850009 Msa0756530:intron 45.0%
! GACCCTGGTAATCTGAAGTT+CGG - chr5_2:10849995-10850014 None:intergenic 45.0%
! AGTTTTCAGAGAAAGGACCC+TGG - chr5_2:10850010-10850029 None:intergenic 45.0%
! AGGGTCCTTTCTCTGAAAAC+TGG + chr5_2:10850009-10850028 Msa0756530:intron 45.0%
!! TGCGAAACTTTGGCTCGTTT+TGG + chr5_2:10850194-10850213 Msa0756530:intron 45.0%
!! GAAACTTTGGCTCGTTTTGG+AGG + chr5_2:10850197-10850216 Msa0756530:intron 45.0%
CTACTTAGTGCGATAAGGCT+TGG - chr5_2:10850732-10850751 None:intergenic 45.0%
! CAAGCCTTATCGCACTAAGT+AGG + chr5_2:10850730-10850749 Msa0756530:intron 45.0%
CTTATCGCACTAAGTAGGGT+CGG + chr5_2:10850735-10850754 Msa0756530:intron 45.0%
CTCCGTGGCTCAAAGTTTAA+TGG - chr5_2:10850799-10850818 None:intergenic 45.0%
ATTCATTGCCTCAAACTCCG+TGG - chr5_2:10850814-10850833 None:intergenic 45.0%
!!! GCTACTGGTTTTATGACTGC+AGG + chr5_2:10851193-10851212 Msa0756530:intron 45.0%
TTTGTGTTTGGGAATGAGGG+TGG + chr5_2:10851232-10851251 Msa0756530:CDS 45.0%
GATGGAAATATGGTACCACC+AGG + chr5_2:10851274-10851293 Msa0756530:CDS 45.0%
TGGAAATATGGTACCACCAG+GGG + chr5_2:10851276-10851295 Msa0756530:CDS 45.0%
ACAAATGTAACAAGAGCCCC+TGG - chr5_2:10851295-10851314 None:intergenic 45.0%
TCAGAAGGGACTACAGTTCT+TGG + chr5_2:10851315-10851334 Msa0756530:CDS 45.0%
GAAGTCTGCATCACACTGAT+AGG - chr5_2:10851476-10851495 None:intergenic 45.0%
! GCGTGGACTGACAATAGAAA+AGG + chr5_2:10851633-10851652 Msa0756530:CDS 45.0%
GGTCTCAGATCAAGAGGATA+AGG + chr5_2:10851756-10851775 Msa0756530:CDS 45.0%
GGTTAAGGTAAAGCATGAGG+AGG + chr5_2:10851861-10851880 Msa0756530:CDS 45.0%
AAGGTAAAGCATGAGGAGGA+TGG + chr5_2:10851865-10851884 Msa0756530:CDS 45.0%
!!! AATTTAAAATAAAAATTAAC+TGG - chr5_2:10847069-10847088 None:intergenic 5.0%
!! ATTATAATTTAAACATATAT+TGG + chr5_2:10847407-10847426 Msa0756530:intron 5.0%
!! TTATAATTTAAACATATATT+GGG + chr5_2:10847408-10847427 Msa0756530:intron 5.0%
!! TAAGAAAAATATATAAATAA+AGG + chr5_2:10848763-10848782 Msa0756530:intron 5.0%
!! AAGAAAAATATATAAATAAA+GGG + chr5_2:10848764-10848783 Msa0756530:intron 5.0%
!!! AAAAAAAAGTATTTAATTAA+AGG + chr5_2:10849143-10849162 Msa0756530:intron 5.0%
!!! AATACATATTTATTTTATTA+CGG - chr5_2:10849400-10849419 None:intergenic 5.0%
GAAGGTAGAAGCGGAACCAA+AGG + chr5_2:10847600-10847619 Msa0756530:intron 50.0%
GCGCACTTCCAACGATTGAT+TGG + chr5_2:10847902-10847921 Msa0756530:intron 50.0%
CTTAAATACTCCCTCCGTCC+CGG - chr5_2:10848936-10848955 None:intergenic 50.0%
CATCCTTACAGCCTTGCACT+AGG - chr5_2:10849037-10849056 None:intergenic 50.0%
TGTGCATGCAATGCAGGATC+AGG + chr5_2:10849185-10849204 Msa0756530:intron 50.0%
TGTTAGCGTACGTAGCAGTC+TGG + chr5_2:10849262-10849281 Msa0756530:intron 50.0%
AGCCTCCAGATTCGTAAGCA+CGG - chr5_2:10849354-10849373 None:intergenic 50.0%
AGCTGGTCGGAAATCGAATC+GGG + chr5_2:10849507-10849526 Msa0756530:intron 50.0%
AGAAAAGGGAAGTCCGATGG+AGG + chr5_2:10849535-10849554 Msa0756530:intron 50.0%
CGACCGAACTTCAGATTACC+AGG + chr5_2:10849989-10850008 Msa0756530:intron 50.0%
CGACCCTACTTAGTGCGATA+AGG - chr5_2:10850737-10850756 None:intergenic 50.0%
ACTTTGAGCCACGGAGTTTG+AGG + chr5_2:10850803-10850822 Msa0756530:intron 50.0%
AATGTAACAAGAGCCCCTGG+TGG - chr5_2:10851292-10851311 None:intergenic 50.0%
GGGACTACAGTTCTTGGAGA+TGG + chr5_2:10851321-10851340 Msa0756530:CDS 50.0%
! AAAGAGCATGATGGTGAGCG+TGG + chr5_2:10851616-10851635 Msa0756530:CDS 50.0%
! CATGAGGAGGATGGAGCATT+TGG + chr5_2:10851874-10851893 Msa0756530:CDS 50.0%
GGAGGTAACCACCTGTTCAA+TGG + chr5_2:10851895-10851914 Msa0756530:CDS 50.0%
AGAAGCGGAACCAAAGGCCA+CGG + chr5_2:10847606-10847625 Msa0756530:intron 55.0%
ATGGGTCGGTTATTCCGGGA+CGG + chr5_2:10848919-10848938 Msa0756530:intron 55.0%
! GGGCTTTGTGCATGCAATGC+AGG + chr5_2:10849179-10849198 Msa0756530:intron 55.0%
CAGGATCAGGAAACACGAGC+AGG + chr5_2:10849198-10849217 Msa0756530:intron 55.0%
GCTGGTCGGAAATCGAATCG+GGG + chr5_2:10849508-10849527 Msa0756530:intron 55.0%
CATCACCACCACTCCTCCAT+CGG - chr5_2:10849551-10849570 None:intergenic 55.0%
! ACCGCGGGTTACTGCTATCT+AGG + chr5_2:10850628-10850647 Msa0756530:intron 55.0%
CCCTAGATAGCAGTAACCCG+CGG - chr5_2:10850632-10850651 None:intergenic 55.0%
! CCGCGGGTTACTGCTATCTA+GGG + chr5_2:10850629-10850648 Msa0756530:intron 55.0%
! GAGGAGGATGGAGCATTTGG+AGG + chr5_2:10851877-10851896 Msa0756530:CDS 55.0%
ATGGAGGGAACCGTGGCCTT+TGG - chr5_2:10847619-10847638 None:intergenic 60.0%
GTCGGTTATTCCGGGACGGA+GGG + chr5_2:10848923-10848942 Msa0756530:intron 60.0%
CAGGGCCGTGCTTACGAATC+TGG + chr5_2:10849346-10849365 Msa0756530:intron 60.0%
GGCCGTGCTTACGAATCTGG+AGG + chr5_2:10849349-10849368 Msa0756530:intron 60.0%
AGGGAAGTCCGATGGAGGAG+TGG + chr5_2:10849540-10849559 Msa0756530:intron 60.0%
GAAGTCCGATGGAGGAGTGG+TGG + chr5_2:10849543-10849562 Msa0756530:intron 60.0%
!! CTAGGTTTGCTGCGTCACCG+CGG + chr5_2:10850612-10850631 Msa0756530:intron 60.0%
!! TAGGTTTGCTGCGTCACCGC+GGG + chr5_2:10850613-10850632 Msa0756530:intron 60.0%
GGTCGGTTATTCCGGGACGG+AGG + chr5_2:10848922-10848941 Msa0756530:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 10846954 10851942 10846954 ID=Msa0756530;Name=Msa0756530
chr5_2 mRNA 10846954 10851942 10846954 ID=Msa0756530-mRNA-1;Parent=Msa0756530;Name=Msa0756530-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.5|0|0.66|1|1|3|0|203
chr5_2 exon 10846954 10846957 10846954 ID=Msa0756530-mRNA-1:exon:4891;Parent=Msa0756530-mRNA-1
chr5_2 exon 10851215 10851360 10851215 ID=Msa0756530-mRNA-1:exon:4892;Parent=Msa0756530-mRNA-1
chr5_2 exon 10851481 10851942 10851481 ID=Msa0756530-mRNA-1:exon:4893;Parent=Msa0756530-mRNA-1
chr5_2 CDS 10846954 10846957 10846954 ID=Msa0756530-mRNA-1:cds;Parent=Msa0756530-mRNA-1
chr5_2 CDS 10851215 10851360 10851215 ID=Msa0756530-mRNA-1:cds;Parent=Msa0756530-mRNA-1
chr5_2 CDS 10851481 10851942 10851481 ID=Msa0756530-mRNA-1:cds;Parent=Msa0756530-mRNA-1
Gene Sequence

>Msa0756530

ATGGGTTTCTCTCATTCTGCTTTTGTGTTTGGGAATGAGGGTGGCATTAACAAATGCCCCATTGATGGAAATATGGTACCACCAGGGGCTCTTGTTACATTTGTTCAGAAGGGACTACAGTTCTTGGAGATGGAAGCTAACTTGAATAATTGTGATGCAGACTTCGATGAAGATTTTTCGTTCTTACAACCTTTGGATCTTATCACAAAAGACGTGCATGAACTTAAGAAAATGATTAATGAAAGAAGAAGAAAACTACAGAAGGGTAAAAATAAGGAATCTGAAAAAGAGCATGATGGTGAGCGTGGACTGACAATAGAAAAGGAAACACATGAAAGGGAGAAAGAATGTGAAAAGGATAAAGAGAAGGTCGAAAATCATAAAGAGCAAGAACTGCCAAATGAAAATCAGATAAGTAGAGAAATGGTCTCAGATCAAGAGGATAAGGTTAATGGTGCTAAAAAAGAAGATCCTAAAAAAGAAGATAAGGTTAATGGTACTAAAAAAGAAGATGCTAAAAAAGAAGATAAGGTTAAGGTAAAGCATGAGGAGGATGGAGCATTTGGAGGTAACCACCTGTTCAATGGATTTGGTTTACATTGTCTTCTATAA

Protein sequence

>Msa0756530

MGFSHSAFVFGNEGGINKCPIDGNMVPPGALVTFVQKGLQFLEMEANLNNCDADFDEDFSFLQPLDLITKDVHELKKMINERRRKLQKGKNKESEKEHDGERGLTIEKETHEREKECEKDKEKVENHKEQELPNENQISREMVSDQEDKVNGAKKEDPKKEDKVNGTKKEDAKKEDKVKVKHEEDGAFGGNHLFNGFGLHCLL*