Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165010 | ABN09020.1 | 87.889 | 578 | 44 | 6 | 20 | 585 | 1 | 564 | 0.0 | 1015 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165010 | sp|O23732|GSHB_BRAJU | 67.546 | 493 | 144 | 2 | 92 | 584 | 53 | 529 | 0.0 | 728 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165010 | A2Q600 | 87.889 | 578 | 44 | 6 | 20 | 585 | 1 | 564 | 0.0 | 1015 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037720 | Msa1165010 | 0.806513 | 7.932212e-50 | -8.615850e-47 |
| Msa0083240 | Msa1165010 | 0.812671 | 3.770985e-51 | -8.615850e-47 |
| Msa0609270 | Msa1165010 | 0.821740 | 3.437751e-53 | -8.615850e-47 |
| Msa0652700 | Msa1165010 | 0.825291 | 5.078610e-54 | -8.615850e-47 |
| Msa0708600 | Msa1165010 | 0.801219 | 9.981214e-49 | -8.615850e-47 |
| Msa0815650 | Msa1165010 | 0.810492 | 1.122098e-50 | -8.615850e-47 |
| Msa0129640 | Msa1165010 | 0.814983 | 1.166564e-51 | -8.615850e-47 |
| Msa0132430 | Msa1165010 | 0.814334 | 1.624625e-51 | -8.615850e-47 |
| Msa0480770 | Msa1165010 | 0.821592 | 3.720304e-53 | -8.615850e-47 |
| Msa1038940 | Msa1165010 | 0.942125 | 1.248877e-101 | -8.615850e-47 |
| Msa0267230 | Msa1165010 | 0.946301 | 5.996967e-105 | -8.615850e-47 |
| Msa1128720 | Msa1165010 | 0.981260 | 3.694730e-152 | -8.615850e-47 |
| Msa1165010 | Msa1172720 | 0.812192 | 4.797462e-51 | -8.615850e-47 |
| Msa1165010 | Msa1214780 | 0.801588 | 8.389842e-49 | -8.615850e-47 |
| Msa1165010 | Msa1265670 | -0.823034 | 1.721383e-53 | -8.615850e-47 |
| Msa1165010 | Msa1300730 | 0.807837 | 4.158972e-50 | -8.615850e-47 |
| Msa1165010 | Msa1393930 | 0.983437 | 9.690555e-158 | -8.615850e-47 |
| Msa1165010 | Msa1412410 | 0.809868 | 1.529239e-50 | -8.615850e-47 |
| Msa1165010 | Msa1427860 | 0.811307 | 7.473416e-51 | -8.615850e-47 |
| Msa0945230 | Msa1165010 | 0.819257 | 1.277237e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165010 | MtrunA17_Chr7g0273151 | 79.532 | 342 | 50 | 5 | 21 | 350 | 3 | 336 | 0.0 | 529 |
| Msa1165010 | MtrunA17_Chr7g0273161 | 96.414 | 251 | 9 | 0 | 335 | 585 | 2 | 252 | 3.70e-178 | 503 |
| Msa1165010 | MtrunA17_Chr7g0273131 | 63.958 | 283 | 93 | 4 | 69 | 348 | 45 | 321 | 5.71e-117 | 350 |
| Msa1165010 | MtrunA17_Chr7g0273141 | 79.213 | 178 | 37 | 0 | 368 | 545 | 5 | 182 | 1.94e-104 | 312 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165010 | AT5G27380.1 | 68.033 | 488 | 140 | 2 | 97 | 584 | 67 | 538 | 0.0 | 713 |
Find 136 sgRNAs with CRISPR-Local
Find 316 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATATTTGGTACTTATTTA+AGG | 0.124901 | 7_4:+56861241 | Msa1165010:CDS |
| CTTGTAGAATTTCTCCTTCT+TGG | 0.158760 | 7_4:-56858926 | None:intergenic |
| GTCTCAGAACTTGGGATATT+TGG | 0.168043 | 7_4:+56861228 | Msa1165010:CDS |
| GCTTGCTTCCATTTACTTTC+TGG | 0.184316 | 7_4:-56857564 | None:intergenic |
| ACACCTGCCATCACCATTAA+TGG | 0.245975 | 7_4:+56856991 | Msa1165010:CDS |
| GCTGCTGCTGCTTCTGCTTC+TGG | 0.247053 | 7_4:+56856817 | Msa1165010:CDS |
| TAGAGCACCTCTAACTTATC+TGG | 0.247256 | 7_4:+56861491 | Msa1165010:three_prime_UTR |
| AAGTTCCTGTTGAATCTTCT+TGG | 0.247926 | 7_4:-56859818 | None:intergenic |
| TAGCCAAGGCCTCGGCATTC+TGG | 0.248762 | 7_4:-56858490 | None:intergenic |
| CGTCATTTCCAGAAAGTAAA+TGG | 0.257725 | 7_4:+56857556 | Msa1165010:CDS |
| AAAACTGCAGCAGAAGTATT+TGG | 0.268628 | 7_4:-56861171 | None:intergenic |
| ATTCTGGCTGACAGCATTAT+TGG | 0.283845 | 7_4:-56858474 | None:intergenic |
| AGCTTATGATGCTCTTGTTT+GGG | 0.286202 | 7_4:+56857098 | Msa1165010:CDS |
| CTCTATTTGCAAAAGGGATT+TGG | 0.292630 | 7_4:-56858134 | None:intergenic |
| TATCATTATGATTGTGGTTC+AGG | 0.293008 | 7_4:+56858633 | Msa1165010:CDS |
| AGGAGAAGGAGGAATGTATT+TGG | 0.308769 | 7_4:-56856872 | None:intergenic |
| GACTTGAATTTGCAGGAATA+AGG | 0.309020 | 7_4:+56861350 | Msa1165010:intron |
| CAGTTGCAGTCATTTACTTC+AGG | 0.313042 | 7_4:+56859074 | Msa1165010:CDS |
| CTTTGCAGGACTGTGGAGTT+TGG | 0.317810 | 7_4:+56860884 | Msa1165010:CDS |
| GGCTTCATTACAAATAATTC+AGG | 0.320071 | 7_4:-56860942 | None:intergenic |
| ACAGGAGGCTCAAATGATAA+TGG | 0.320779 | 7_4:-56861540 | None:intergenic |
| CCCTTCAATATCGTATCATT+TGG | 0.320965 | 7_4:+56859789 | Msa1165010:CDS |
| CCATGGAAAATTGCTTGGTC+TGG | 0.322664 | 7_4:+56858433 | Msa1165010:CDS |
| TAGTACCTCCTCCTTCTCTC+TGG | 0.326878 | 7_4:-56860965 | None:intergenic |
| ACTATTTCATCTTCATTTGC+TGG | 0.337912 | 7_4:+56858163 | Msa1165010:CDS |
| TAGCTTATGATGCTCTTGTT+TGG | 0.342114 | 7_4:+56857097 | Msa1165010:CDS |
| AACTTAATAGGAAATAAGAT+TGG | 0.357115 | 7_4:+56858075 | Msa1165010:intron |
| TCTTTCCAATTACAGAAATC+AGG | 0.362565 | 7_4:+56857483 | Msa1165010:intron |
| CTTGTTTGGGCCTCTCTTCA+CGG | 0.363437 | 7_4:+56857111 | Msa1165010:CDS |
| AAAATGCGTGAATGCTTTGC+AGG | 0.374193 | 7_4:+56860870 | Msa1165010:CDS |
| GTTGACCGTGTTAGTTTAGA+TGG | 0.384757 | 7_4:+56857618 | Msa1165010:CDS |
| CTCTCTTCACGGTCTCCTCA+TGG | 0.391323 | 7_4:+56857122 | Msa1165010:CDS |
| ATGGAAGCAAGCTTCTGATT+TGG | 0.394917 | 7_4:+56857575 | Msa1165010:CDS |
| CAGCCAGAATGCCGAGGCCT+TGG | 0.406436 | 7_4:+56858487 | Msa1165010:CDS |
| GACCACGCCGTCTCAGAACT+TGG | 0.416285 | 7_4:+56861219 | Msa1165010:CDS |
| CGATACGATGTTGAAGCAAT+AGG | 0.419718 | 7_4:+56856790 | Msa1165010:CDS |
| CAGAAATCAGGAATGGTTCC+TGG | 0.422349 | 7_4:+56857495 | Msa1165010:intron |
| TTTGTTGAGCTGTAGCATCT+TGG | 0.432576 | 7_4:-56857892 | None:intergenic |
| TGTTGAGCTCTATTTGCAAA+AGG | 0.432901 | 7_4:-56858141 | None:intergenic |
| CTCATAAAATTGCAGAAAAC+GGG | 0.433571 | 7_4:+56861105 | Msa1165010:CDS |
| CAGGAGGCTCAAATGATAAT+GGG | 0.436248 | 7_4:-56861539 | None:intergenic |
| CCTCATAAAATTGCAGAAAA+CGG | 0.438181 | 7_4:+56861104 | Msa1165010:CDS |
| TCAACAAGTTCATTGAATAT+AGG | 0.442386 | 7_4:-56857600 | None:intergenic |
| AGTACCTCCTCCTTCTCTCT+GGG | 0.443480 | 7_4:-56860964 | None:intergenic |
| ACTTAATAGGAAATAAGATT+GGG | 0.446606 | 7_4:+56858076 | Msa1165010:intron |
| TACTTTCTGGAAATGACGTT+GGG | 0.448557 | 7_4:-56857551 | None:intergenic |
| AATATACCCAGATAAGTTAG+AGG | 0.449017 | 7_4:-56861498 | None:intergenic |
| TACAAGGTAAAGATAGAAGA+AGG | 0.451074 | 7_4:-56856912 | None:intergenic |
| TCAATATCGTATCATTTGGT+TGG | 0.454140 | 7_4:+56859793 | Msa1165010:CDS |
| GCTTGGTCTGGATTCAGAAA+AGG | 0.454195 | 7_4:+56858445 | Msa1165010:CDS |
| TGATGATGATGAGACATTAG+AGG | 0.456067 | 7_4:-56856955 | None:intergenic |
| TCTTGCCATGGAAAATTGCT+TGG | 0.461118 | 7_4:+56858428 | Msa1165010:CDS |
| GACGAAGGTGGGGTTGCAGC+TGG | 0.464192 | 7_4:+56861432 | Msa1165010:CDS |
| TGGACAAAGGTATTATTGTC+TGG | 0.469663 | 7_4:-56856852 | None:intergenic |
| GATTCTGAAGGATAATCAAC+TGG | 0.471685 | 7_4:-56859109 | None:intergenic |
| GTTGAGCTCTATTTGCAAAA+GGG | 0.477698 | 7_4:-56858140 | None:intergenic |
| GACGTTGGGAATAATGCAAA+CGG | 0.479910 | 7_4:-56857537 | None:intergenic |
| AGAGGCAGACAAATATAAAC+AGG | 0.483894 | 7_4:-56861558 | None:intergenic |
| AGTTTATAACTACGGTGATA+AGG | 0.484715 | 7_4:-56858715 | None:intergenic |
| ACGTTGGGAATAATGCAAAC+GGG | 0.485054 | 7_4:-56857536 | None:intergenic |
| GAATTTGCAGGAATAAGGAT+AGG | 0.485387 | 7_4:+56861355 | Msa1165010:intron |
| GAAGGAGAAATTCTACAAGA+TGG | 0.488802 | 7_4:+56858930 | Msa1165010:CDS |
| CATGGGAGATAAATCTTACC+AGG | 0.493452 | 7_4:+56857140 | Msa1165010:CDS |
| CTCTTGTCACTCAACTTCAT+AGG | 0.498422 | 7_4:+56858194 | Msa1165010:CDS |
| AGTTGCAGTCATTTACTTCA+GGG | 0.502680 | 7_4:+56859075 | Msa1165010:CDS |
| CCGAGGCCTTGGCTAAAGCT+TGG | 0.504909 | 7_4:+56858498 | Msa1165010:CDS |
| AGGTACATACTTTCTTGCCA+TGG | 0.512977 | 7_4:+56858416 | Msa1165010:intron |
| GCAGTCATTTACTTCAGGGC+TGG | 0.514362 | 7_4:+56859079 | Msa1165010:CDS |
| AGTATTGATCAACAACTTCT+CGG | 0.516257 | 7_4:+56857069 | Msa1165010:CDS |
| TCTCTTCACGGTCTCCTCAT+GGG | 0.517899 | 7_4:+56857123 | Msa1165010:CDS |
| TTCATCGCCATTAATGGTGA+TGG | 0.520509 | 7_4:-56856998 | None:intergenic |
| CCAATTACAGAAATCAGGAA+TGG | 0.520677 | 7_4:+56857488 | Msa1165010:intron |
| TATTTATGGTGAAGCAGTGC+GGG | 0.520781 | 7_4:+56861077 | Msa1165010:CDS |
| CAGGGCTATCATTATGATTG+TGG | 0.521933 | 7_4:+56858627 | Msa1165010:intron |
| ACCAAATGATACGATATTGA+AGG | 0.522355 | 7_4:-56859790 | None:intergenic |
| TATCATCATCTGACGAAGGT+GGG | 0.522364 | 7_4:+56861421 | Msa1165010:CDS |
| TGGCTGACAGCATTATTGGC+AGG | 0.526065 | 7_4:-56858470 | None:intergenic |
| TGGCACCAAGAAGATTCAAC+AGG | 0.526530 | 7_4:+56859813 | Msa1165010:CDS |
| AATTTGCAGGAATAAGGATA+GGG | 0.531981 | 7_4:+56861356 | Msa1165010:intron |
| ATCAGGAATGGTTCCTGGTG+TGG | 0.532782 | 7_4:+56857500 | Msa1165010:CDS |
| CAACAGGAACTTGCAAAGCC+AGG | 0.536479 | 7_4:+56859829 | Msa1165010:CDS |
| TGATAATCATCAGCGAATAG+AGG | 0.539988 | 7_4:-56857045 | None:intergenic |
| CCAAGCTTTAGCCAAGGCCT+CGG | 0.543942 | 7_4:-56858498 | None:intergenic |
| TCCTTAGCTTTGAACACGCA+TGG | 0.547326 | 7_4:+56858867 | Msa1165010:CDS |
| ATATGCAGGAATGGAGAGCT+AGG | 0.552197 | 7_4:+56859734 | Msa1165010:intron |
| CAAAGCCAGGTGTTCTTGAG+AGG | 0.552723 | 7_4:+56859842 | Msa1165010:CDS |
| TCAGGAATGGTTCCTGGTGT+GGG | 0.557885 | 7_4:+56857501 | Msa1165010:CDS |
| GTAATGAAGCCCCAGAGAGA+AGG | 0.558389 | 7_4:+56860954 | Msa1165010:CDS |
| ATGAAGCCCCAGAGAGAAGG+AGG | 0.563223 | 7_4:+56860957 | Msa1165010:CDS |
| ACCATGCGTGTTCAAAGCTA+AGG | 0.563501 | 7_4:-56858868 | None:intergenic |
| TTACTTTCTGGAAATGACGT+TGG | 0.567133 | 7_4:-56857552 | None:intergenic |
| TTCTTCAAGAATCTCTCTCA+AGG | 0.567231 | 7_4:+56857646 | Msa1165010:CDS |
| ATGGAGAGCTAGGCTACTGA+TGG | 0.569626 | 7_4:+56859744 | Msa1165010:CDS |
| TCATCAGCGAATAGAGGAGG+AGG | 0.570573 | 7_4:-56857039 | None:intergenic |
| GAACAGCAGAAAGAAAATGC+TGG | 0.573205 | 7_4:-56858678 | None:intergenic |
| TCAGCGAATAGAGGAGGAGG+AGG | 0.573514 | 7_4:-56857036 | None:intergenic |
| ATCATCATCTGACGAAGGTG+GGG | 0.576564 | 7_4:+56861422 | Msa1165010:CDS |
| TGGCCACTTACTGATTCTGA+AGG | 0.580546 | 7_4:-56859121 | None:intergenic |
| AGAGCACCTCTAACTTATCT+GGG | 0.583038 | 7_4:+56861492 | Msa1165010:three_prime_UTR |
| TCAATCCAGAACTAAGCAAG+TGG | 0.583274 | 7_4:+56857836 | Msa1165010:intron |
| CCAAATGATACGATATTGAA+GGG | 0.583942 | 7_4:-56859789 | None:intergenic |
| GGAGGAATGTATTTGGACAA+AGG | 0.587129 | 7_4:-56856865 | None:intergenic |
| TCGCCATTAATGGTGATGGC+AGG | 0.589219 | 7_4:-56856994 | None:intergenic |
| ATGAATATCTAAAAGTCTAG+AGG | 0.596316 | 7_4:-56857868 | None:intergenic |
| TACAATTGTTCGCAAAACGA+TGG | 0.597280 | 7_4:+56858893 | Msa1165010:CDS |
| GTCGTCGAGAAATTTATACA+AGG | 0.599831 | 7_4:-56856928 | None:intergenic |
| CGATGTTGAAGCAATAGGCA+TGG | 0.604299 | 7_4:+56856795 | Msa1165010:CDS |
| ATATCATCATCTGACGAAGG+TGG | 0.604927 | 7_4:+56861420 | Msa1165010:CDS |
| TGTAACTATACAACACACCA+TGG | 0.605619 | 7_4:-56861628 | None:intergenic |
| GCATGCATCAATCCCACACC+AGG | 0.606616 | 7_4:-56857513 | None:intergenic |
| AGATACCTCTCAAGAACACC+TGG | 0.608405 | 7_4:-56859847 | None:intergenic |
| ATGGCAGAAGTTGACCAAGA+AGG | 0.613185 | 7_4:+56858912 | Msa1165010:CDS |
| ACCACGCCGTCTCAGAACTT+GGG | 0.613931 | 7_4:+56861220 | Msa1165010:CDS |
| CATGAGGAGACCGTGAAGAG+AGG | 0.614477 | 7_4:-56857121 | None:intergenic |
| AAGCCCCAGAGAGAAGGAGG+AGG | 0.623964 | 7_4:+56860960 | Msa1165010:CDS |
| AAATATCCCAAGTTCTGAGA+CGG | 0.625935 | 7_4:-56861226 | None:intergenic |
| ACTGTGGAGTTTGGATGACT+CGG | 0.630953 | 7_4:+56860893 | Msa1165010:CDS |
| GGAGTGAGTATAATAACCCC+AGG | 0.633676 | 7_4:+56858519 | Msa1165010:CDS |
| CTCACTCCAAGCTTTAGCCA+AGG | 0.636780 | 7_4:-56858504 | None:intergenic |
| TGCTGTCAGCCAGAATGCCG+AGG | 0.640820 | 7_4:+56858481 | Msa1165010:CDS |
| GCGTAATGGTTGTTGGCACA+AGG | 0.648992 | 7_4:+56861197 | Msa1165010:CDS |
| CAGCTTACATACTTATGCAG+AGG | 0.649813 | 7_4:+56861142 | Msa1165010:CDS |
| CGTTGGGAATAATGCAAACG+GGG | 0.650289 | 7_4:-56857535 | None:intergenic |
| GTACCTCCTCCTTCTCTCTG+GGG | 0.656439 | 7_4:-56860963 | None:intergenic |
| TCCCAAGTTCTGAGACGGCG+TGG | 0.660655 | 7_4:-56861221 | None:intergenic |
| AAAATATCATCATCTGACGA+AGG | 0.662845 | 7_4:+56861417 | Msa1165010:CDS |
| GGCAGACAAATATAAACAGG+AGG | 0.666515 | 7_4:-56861555 | None:intergenic |
| TAATCATCAGCGAATAGAGG+AGG | 0.667692 | 7_4:-56857042 | None:intergenic |
| GTTGTCGTGAATAATCAAAG+TGG | 0.670695 | 7_4:+56861378 | Msa1165010:CDS |
| GTAACTATACAACACACCAT+GGG | 0.672655 | 7_4:-56861627 | None:intergenic |
| GAGGTGCTCTACATCAAGTG+AGG | 0.688457 | 7_4:-56861479 | None:intergenic |
| ATATTTATGGTGAAGCAGTG+CGG | 0.689917 | 7_4:+56861076 | Msa1165010:CDS |
| ATTCACCATCTAAACTAACA+CGG | 0.698126 | 7_4:-56857623 | None:intergenic |
| GGTAAGATTTATCTCCCATG+AGG | 0.699020 | 7_4:-56857137 | None:intergenic |
| GTGAATGCTTTGCAGGACTG+TGG | 0.717162 | 7_4:+56860877 | Msa1165010:CDS |
| ATAACGTAAAATAAACAACG+TGG | 0.837611 | 7_4:-56861604 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGTTTTTTTTTTATAAAG+TGG | + | chr7_4:56858005-56858024 | Msa1165010:intron | 10.0% |
| !!! | TTTATATTTTAAACATATTC+TGG | + | chr7_4:56858830-56858849 | Msa1165010:intron | 10.0% |
| !!! | AAATACAAATCAATATATTT+TGG | - | chr7_4:56860753-56860772 | None:intergenic | 10.0% |
| !! | TGTAATCATTTAGAAATATA+AGG | - | chr7_4:56858605-56858624 | None:intergenic | 15.0% |
| !! | TCAACAAATAATATAACTTA+TGG | - | chr7_4:56859458-56859477 | None:intergenic | 15.0% |
| !!! | AAGTTATATTATTTGTTGAT+TGG | + | chr7_4:56859459-56859478 | Msa1165010:intron | 15.0% |
| !! | GTTTAAATATTTATCTTATC+CGG | + | chr7_4:56860485-56860504 | Msa1165010:intron | 15.0% |
| !! | AAATGAAAATAAGAAGAAGA+AGG | - | chr7_4:56857175-56857194 | None:intergenic | 20.0% |
| !! | ATAGTAATTTACAAAATCAC+TGG | + | chr7_4:56857301-56857320 | Msa1165010:intron | 20.0% |
| !! | ATTTGAGCTGTAAATAAATT+AGG | + | chr7_4:56857417-56857436 | Msa1165010:intron | 20.0% |
| !! | TTTAAAAATATGAACAAGCA+AGG | + | chr7_4:56857440-56857459 | Msa1165010:intron | 20.0% |
| !!! | TTTTTTATAAAGTGGATCAA+AGG | + | chr7_4:56858013-56858032 | Msa1165010:intron | 20.0% |
| !!! | TGATATATTACTTTTACTGT+TGG | + | chr7_4:56858043-56858062 | Msa1165010:intron | 20.0% |
| !! | AACTTAATAGGAAATAAGAT+TGG | + | chr7_4:56858075-56858094 | Msa1165010:intron | 20.0% |
| !! | ACTTAATAGGAAATAAGATT+GGG | + | chr7_4:56858076-56858095 | Msa1165010:intron | 20.0% |
| !! | ATTTCTAAATGATTACATAC+AGG | + | chr7_4:56858608-56858627 | Msa1165010:intron | 20.0% |
| !! | TTTCTAAATGATTACATACA+GGG | + | chr7_4:56858609-56858628 | Msa1165010:intron | 20.0% |
| !! | CTATTGTAAGTTTATAACTA+CGG | - | chr7_4:56858726-56858745 | None:intergenic | 20.0% |
| !! | AAAGTGTAGTTTATCATATA+AGG | + | chr7_4:56858796-56858815 | Msa1165010:intron | 20.0% |
| !!! | CAATTTTTTTACTGTAGTAA+TGG | + | chr7_4:56859046-56859065 | Msa1165010:intron | 20.0% |
| !!! | TATATTATTTGTTGATTGGT+CGG | + | chr7_4:56859463-56859482 | Msa1165010:intron | 20.0% |
| !! | TAATCTAACGGTAAAAAAAA+AGG | - | chr7_4:56859539-56859558 | None:intergenic | 20.0% |
| !! | GTTTGAAAAAAGTAATCTAA+CGG | - | chr7_4:56859551-56859570 | None:intergenic | 20.0% |
| !! | CATGATTAATCAAATAAGTA+AGG | - | chr7_4:56860039-56860058 | None:intergenic | 20.0% |
| !! | CTTACTTATTTGATTAATCA+TGG | + | chr7_4:56860037-56860056 | Msa1165010:intron | 20.0% |
| !! | TATTTGATTAATCATGGATA+TGG | + | chr7_4:56860043-56860062 | Msa1165010:intron | 20.0% |
| !! | AACAAGATATGAAAAAGATA+TGG | - | chr7_4:56860135-56860154 | None:intergenic | 20.0% |
| !!! | AATTTTGGAAGAAAAATTGA+AGG | - | chr7_4:56860529-56860548 | None:intergenic | 20.0% |
| !! | GAAAAAAAAGCAAAATAAGA+AGG | + | chr7_4:56860563-56860582 | Msa1165010:intron | 20.0% |
| !!! | GAAGGAAAAAAAAATCATTT+TGG | + | chr7_4:56860581-56860600 | Msa1165010:intron | 20.0% |
| !!! | AAAAAATCATTTTGGATGAT+CGG | + | chr7_4:56860589-56860608 | Msa1165010:intron | 20.0% |
| !!! | AATATAATTTTCAACAGAGT+TGG | - | chr7_4:56861026-56861045 | None:intergenic | 20.0% |
| !!! | ATGATCTGTAATTATTTTTC+AGG | + | chr7_4:56861048-56861067 | Msa1165010:intron | 20.0% |
| !!! | TTTTCAGGAAACAATATTTA+TGG | + | chr7_4:56861063-56861082 | Msa1165010:intron | 20.0% |
| ! | GCTTAGTAAAAATGAGTTTA+TGG | - | chr7_4:56857236-56857255 | None:intergenic | 25.0% |
| ! | AAACTCATTGTAAAACCAAA+CGG | - | chr7_4:56857272-56857291 | None:intergenic | 25.0% |
| ! | TCAACAAGTTCATTGAATAT+AGG | - | chr7_4:56857603-56857622 | None:intergenic | 25.0% |
| ! | TATTCTTATTCATTGTCAAG+TGG | + | chr7_4:56857703-56857722 | Msa1165010:intron | 25.0% |
| ! | ATTCTTATTCATTGTCAAGT+GGG | + | chr7_4:56857704-56857723 | Msa1165010:intron | 25.0% |
| ! | TGACAATTAAAAGCTGAAAA+TGG | - | chr7_4:56857791-56857810 | None:intergenic | 25.0% |
| ! | ATGAATATCTAAAAGTCTAG+AGG | - | chr7_4:56857871-56857890 | None:intergenic | 25.0% |
| !! | TGGCATCAATTTAACTTAAT+AGG | + | chr7_4:56858063-56858082 | Msa1165010:intron | 25.0% |
| ! | GAAGTGAAACAAATATCTAA+AGG | - | chr7_4:56858278-56858297 | None:intergenic | 25.0% |
| !! | GAAAAAGGATATTTGTTTCT+CGG | - | chr7_4:56858551-56858570 | None:intergenic | 25.0% |
| ! | AGAATAAAGTGAACTGAAAA+AGG | - | chr7_4:56858566-56858585 | None:intergenic | 25.0% |
| !! | CTTTATTCTACTGCTAATTT+TGG | + | chr7_4:56858577-56858596 | Msa1165010:intron | 25.0% |
| ! | ACAAGCAAGAAAAAATAAAC+TGG | - | chr7_4:56859144-56859163 | None:intergenic | 25.0% |
| ! | AACTCATTATCTGAAAGATT+AGG | + | chr7_4:56859217-56859236 | Msa1165010:intron | 25.0% |
| ! | ATTATCTGAAAGATTAGGAA+AGG | + | chr7_4:56859222-56859241 | Msa1165010:intron | 25.0% |
| ! | AAACCAACAGAACAAAAATA+AGG | - | chr7_4:56859334-56859353 | None:intergenic | 25.0% |
| ! | GGAAGTTATTTATCTTCAAA+AGG | - | chr7_4:56859409-56859428 | None:intergenic | 25.0% |
| ! | AAGATAAATAACTTCCAGTT+TGG | + | chr7_4:56859413-56859432 | Msa1165010:intron | 25.0% |
| ! | AACAATAACTGAAAAAAGCA+AGG | - | chr7_4:56859897-56859916 | None:intergenic | 25.0% |
| ! | TTAATCAAATAAGTAAGGCA+TGG | - | chr7_4:56860034-56860053 | None:intergenic | 25.0% |
| !! | AAATTGAAGGTACAAGAAAA+GGG | - | chr7_4:56860516-56860535 | None:intergenic | 25.0% |
| !! | AAAATTGAAGGTACAAGAAA+AGG | - | chr7_4:56860517-56860536 | None:intergenic | 25.0% |
| ! | ATACTTCCTATTATGGTTAT+AGG | + | chr7_4:56860645-56860664 | Msa1165010:intron | 25.0% |
| ! | GTAATTCCTATAACCATAAT+AGG | - | chr7_4:56860654-56860673 | None:intergenic | 25.0% |
| ! | GGATATTTGGTACTTATTTA+AGG | + | chr7_4:56861241-56861260 | Msa1165010:CDS | 25.0% |
| ! | TCTGCAAAAAATTGAAAGAA+GGG | + | chr7_4:56861578-56861597 | Msa1165010:three_prime_UTR | 25.0% |
| ! | ATAACGTAAAATAAACAACG+TGG | - | chr7_4:56861607-56861626 | None:intergenic | 25.0% |
| TACAAGGTAAAGATAGAAGA+AGG | - | chr7_4:56856915-56856934 | None:intergenic | 30.0% | |
| !! | AGTATTGATCAACAACTTCT+CGG | + | chr7_4:56857069-56857088 | Msa1165010:CDS | 30.0% |
| TCTTTCCAATTACAGAAATC+AGG | + | chr7_4:56857483-56857502 | Msa1165010:intron | 30.0% | |
| ATTCACCATCTAAACTAACA+CGG | - | chr7_4:56857626-56857645 | None:intergenic | 30.0% | |
| AGTGAAGTGAATTAGTAGAA+CGG | - | chr7_4:56857673-56857692 | None:intergenic | 30.0% | |
| ATGGAAAAGACGTAGAAAAA+AGG | - | chr7_4:56857772-56857791 | None:intergenic | 30.0% | |
| TATGTAGCGTTATTGTGAAA+AGG | - | chr7_4:56857978-56857997 | None:intergenic | 30.0% | |
| ACTATTTCATCTTCATTTGC+TGG | + | chr7_4:56858163-56858182 | Msa1165010:CDS | 30.0% | |
| !! | AAATTCTGAGGTGAAACATA+GGG | - | chr7_4:56858362-56858381 | None:intergenic | 30.0% |
| !! | AAAATTCTGAGGTGAAACAT+AGG | - | chr7_4:56858363-56858382 | None:intergenic | 30.0% |
| ! | TTTTTCTGACCCAATTGTTT+CGG | + | chr7_4:56858380-56858399 | Msa1165010:intron | 30.0% |
| AATCACAAACCGAAACAATT+GGG | - | chr7_4:56858392-56858411 | None:intergenic | 30.0% | |
| AAATCACAAACCGAAACAAT+TGG | - | chr7_4:56858393-56858412 | None:intergenic | 30.0% | |
| TATCATTATGATTGTGGTTC+AGG | + | chr7_4:56858633-56858652 | Msa1165010:CDS | 30.0% | |
| AGTTTATAACTACGGTGATA+AGG | - | chr7_4:56858718-56858737 | None:intergenic | 30.0% | |
| TAAAGAAAGTCAGTTTCTGA+TGG | - | chr7_4:56858983-56859002 | None:intergenic | 30.0% | |
| ! | ACTGACTTTCTTTAAGTTTG+TGG | + | chr7_4:56858989-56859008 | Msa1165010:intron | 30.0% |
| !! | AAAAGGTGTTCAATACTTGT+AGG | - | chr7_4:56859392-56859411 | None:intergenic | 30.0% |
| ! | TATGGAACTCAACTATTTTG+AGG | - | chr7_4:56859440-56859459 | None:intergenic | 30.0% |
| ACCTCAATCTTTCTATTCTA+TGG | + | chr7_4:56859593-56859612 | Msa1165010:intron | 30.0% | |
| TCCATAGAATAGAAAGATTG+AGG | - | chr7_4:56859597-56859616 | None:intergenic | 30.0% | |
| CCAAATGATACGATATTGAA+GGG | - | chr7_4:56859792-56859811 | None:intergenic | 30.0% | |
| ACCAAATGATACGATATTGA+AGG | - | chr7_4:56859793-56859812 | None:intergenic | 30.0% | |
| TCAATATCGTATCATTTGGT+TGG | + | chr7_4:56859793-56859812 | Msa1165010:CDS | 30.0% | |
| CCAACCAATCAAATCATAAA+TGG | - | chr7_4:56860078-56860097 | None:intergenic | 30.0% | |
| CCATTTATGATTTGATTGGT+TGG | + | chr7_4:56860075-56860094 | Msa1165010:intron | 30.0% | |
| TGCATCGTTAATAACTGAAA+CGG | + | chr7_4:56860215-56860234 | Msa1165010:intron | 30.0% | |
| TCATAAGAATGAATTCAACG+CGG | + | chr7_4:56860315-56860334 | Msa1165010:intron | 30.0% | |
| !! | GTTTTGATGTTAGAGAAAAC+TGG | + | chr7_4:56860337-56860356 | Msa1165010:intron | 30.0% |
| ! | CGTTAAATCATGATTAGTTG+CGG | - | chr7_4:56860363-56860382 | None:intergenic | 30.0% |
| CGCAACTAATCATGATTTAA+CGG | + | chr7_4:56860361-56860380 | Msa1165010:intron | 30.0% | |
| GCAACTAATCATGATTTAAC+GGG | + | chr7_4:56860362-56860381 | Msa1165010:intron | 30.0% | |
| ! | AATTGAAGGTACAAGAAAAG+GGG | - | chr7_4:56860515-56860534 | None:intergenic | 30.0% |
| ! | CAAGACAGAACAAGTAATTT+TGG | - | chr7_4:56860544-56860563 | None:intergenic | 30.0% |
| TGTAAATGAATATGTTCCCT+TGG | + | chr7_4:56860612-56860631 | Msa1165010:intron | 30.0% | |
| TACACTCATACTTCCTATTA+TGG | + | chr7_4:56860638-56860657 | Msa1165010:intron | 30.0% | |
| !!! | CAGTTTTGATTCAAGGATTT+AGG | - | chr7_4:56860815-56860834 | None:intergenic | 30.0% |
| GGCTTCATTACAAATAATTC+AGG | - | chr7_4:56860945-56860964 | None:intergenic | 30.0% | |
| ! | AAAGTTAGATCACGTTTTAG+GGG | - | chr7_4:56860994-56861013 | None:intergenic | 30.0% |
| ! | GAAAGTTAGATCACGTTTTA+GGG | - | chr7_4:56860995-56861014 | None:intergenic | 30.0% |
| ! | AGAAAGTTAGATCACGTTTT+AGG | - | chr7_4:56860996-56861015 | None:intergenic | 30.0% |
| ! | CGTTTTCTGCAATTTTATGA+GGG | - | chr7_4:56861106-56861125 | None:intergenic | 30.0% |
| CCTCATAAAATTGCAGAAAA+CGG | + | chr7_4:56861104-56861123 | Msa1165010:CDS | 30.0% | |
| CTCATAAAATTGCAGAAAAC+GGG | + | chr7_4:56861105-56861124 | Msa1165010:CDS | 30.0% | |
| GACTATATATCTCTATAGCT+CGG | + | chr7_4:56861274-56861293 | Msa1165010:intron | 30.0% | |
| AATTTGCAGGAATAAGGATA+GGG | + | chr7_4:56861356-56861375 | Msa1165010:intron | 30.0% | |
| AAAATATCATCATCTGACGA+AGG | + | chr7_4:56861417-56861436 | Msa1165010:CDS | 30.0% | |
| AATATACCCAGATAAGTTAG+AGG | - | chr7_4:56861501-56861520 | None:intergenic | 30.0% | |
| !!! | CTTCTTTCAATTTTTTGCAG+AGG | - | chr7_4:56861579-56861598 | None:intergenic | 30.0% |
| CTCTGCAAAAAATTGAAAGA+AGG | + | chr7_4:56861577-56861596 | Msa1165010:three_prime_UTR | 30.0% | |
| !!! | GTTTATTTTACGTTATCCCA+TGG | + | chr7_4:56861611-56861630 | Msa1165010:three_prime_UTR | 30.0% |
| !! | TTTGAGCAAAAAGCATTAAC+AGG | - | chr7_4:56861663-56861682 | None:intergenic | 30.0% |
| !! | TGGACAAAGGTATTATTGTC+TGG | - | chr7_4:56856855-56856874 | None:intergenic | 35.0% |
| !!! | AGAAGGTTGTTGTTTTTGTG+AGG | - | chr7_4:56856898-56856917 | None:intergenic | 35.0% |
| GTCGTCGAGAAATTTATACA+AGG | - | chr7_4:56856931-56856950 | None:intergenic | 35.0% | |
| ! | TGATGATGATGAGACATTAG+AGG | - | chr7_4:56856958-56856977 | None:intergenic | 35.0% |
| !! | GTTTTGTTCATCGCCATTAA+TGG | - | chr7_4:56857007-56857026 | None:intergenic | 35.0% |
| TGATAATCATCAGCGAATAG+AGG | - | chr7_4:56857048-56857067 | None:intergenic | 35.0% | |
| TAGCTTATGATGCTCTTGTT+TGG | + | chr7_4:56857097-56857116 | Msa1165010:CDS | 35.0% | |
| ! | AGCTTATGATGCTCTTGTTT+GGG | + | chr7_4:56857098-56857117 | Msa1165010:CDS | 35.0% |
| ATTGTAAAACCAAACGGTGA+TGG | - | chr7_4:56857266-56857285 | None:intergenic | 35.0% | |
| TGGAATTAAGCATGCATGTT+TGG | + | chr7_4:56857390-56857409 | Msa1165010:intron | 35.0% | |
| CCATTCCTGATTTCTGTAAT+TGG | - | chr7_4:56857491-56857510 | None:intergenic | 35.0% | |
| CCAATTACAGAAATCAGGAA+TGG | + | chr7_4:56857488-56857507 | Msa1165010:intron | 35.0% | |
| ! | TACTTTCTGGAAATGACGTT+GGG | - | chr7_4:56857554-56857573 | None:intergenic | 35.0% |
| ! | TTACTTTCTGGAAATGACGT+TGG | - | chr7_4:56857555-56857574 | None:intergenic | 35.0% |
| CGTCATTTCCAGAAAGTAAA+TGG | + | chr7_4:56857556-56857575 | Msa1165010:CDS | 35.0% | |
| TTCTTCAAGAATCTCTCTCA+AGG | + | chr7_4:56857646-56857665 | Msa1165010:CDS | 35.0% | |
| CCAAACCAAACAAACGAAAA+GGG | - | chr7_4:56857733-56857752 | None:intergenic | 35.0% | |
| ACCAAACCAAACAAACGAAA+AGG | - | chr7_4:56857734-56857753 | None:intergenic | 35.0% | |
| ! | GGTAGCTATATTGGTTAAAG+TGG | + | chr7_4:56857924-56857943 | Msa1165010:intron | 35.0% |
| CTCTATTTGCAAAAGGGATT+TGG | - | chr7_4:56858137-56858156 | None:intergenic | 35.0% | |
| GTTGAGCTCTATTTGCAAAA+GGG | - | chr7_4:56858143-56858162 | None:intergenic | 35.0% | |
| TGTTGAGCTCTATTTGCAAA+AGG | - | chr7_4:56858144-56858163 | None:intergenic | 35.0% | |
| GCAAAAGAGATGAAAAACAG+AGG | - | chr7_4:56858337-56858356 | None:intergenic | 35.0% | |
| TTGGGTCAGAAAAAATTCTG+AGG | - | chr7_4:56858374-56858393 | None:intergenic | 35.0% | |
| !! | GTTTCGGTTTGTGATTTTTC+AGG | + | chr7_4:56858396-56858415 | Msa1165010:intron | 35.0% |
| CTACCAAATGTGATATCAGA+GGG | + | chr7_4:56858770-56858789 | Msa1165010:intron | 35.0% | |
| ATACCCTCTGATATCACATT+TGG | - | chr7_4:56858776-56858795 | None:intergenic | 35.0% | |
| TACAATTGTTCGCAAAACGA+TGG | + | chr7_4:56858893-56858912 | Msa1165010:CDS | 35.0% | |
| CTTGTAGAATTTCTCCTTCT+TGG | - | chr7_4:56858929-56858948 | None:intergenic | 35.0% | |
| GAAGGAGAAATTCTACAAGA+TGG | + | chr7_4:56858930-56858949 | Msa1165010:CDS | 35.0% | |
| AGTTGCAGTCATTTACTTCA+GGG | + | chr7_4:56859075-56859094 | Msa1165010:CDS | 35.0% | |
| ! | GATTCTGAAGGATAATCAAC+TGG | - | chr7_4:56859112-56859131 | None:intergenic | 35.0% |
| TATCCTTCAGAATCAGTAAG+TGG | + | chr7_4:56859118-56859137 | Msa1165010:intron | 35.0% | |
| ! | ATTGCGCTTTTACATCGTAA+AGG | + | chr7_4:56859172-56859191 | Msa1165010:intron | 35.0% |
| ATCATACCAGGTAATTCAGT+GGG | - | chr7_4:56859252-56859271 | None:intergenic | 35.0% | |
| CCAACAGAACAAAAATAAGG+TGG | - | chr7_4:56859331-56859350 | None:intergenic | 35.0% | |
| !!! | CCACCTTATTTTTGTTCTGT+TGG | + | chr7_4:56859328-56859347 | Msa1165010:intron | 35.0% |
| !!! | AACTATTTTGAGGTCCAAAC+TGG | - | chr7_4:56859430-56859449 | None:intergenic | 35.0% |
| GAACTCATTGTCAGGATAAA+AGG | - | chr7_4:56859682-56859701 | None:intergenic | 35.0% | |
| GCATAACTTACTCAATATGC+AGG | + | chr7_4:56859720-56859739 | Msa1165010:intron | 35.0% | |
| ACTTACTCAATATGCAGGAA+TGG | + | chr7_4:56859725-56859744 | Msa1165010:intron | 35.0% | |
| CCCTTCAATATCGTATCATT+TGG | + | chr7_4:56859789-56859808 | Msa1165010:CDS | 35.0% | |
| AAGTTCCTGTTGAATCTTCT+TGG | - | chr7_4:56859821-56859840 | None:intergenic | 35.0% | |
| AGAACATAAGATCCAGAAGA+AGG | - | chr7_4:56860006-56860025 | None:intergenic | 35.0% | |
| CAAATAAGTAAGGCATGGAT+TGG | - | chr7_4:56860029-56860048 | None:intergenic | 35.0% | |
| CCAATCAAATCATAAATGGC+TGG | - | chr7_4:56860074-56860093 | None:intergenic | 35.0% | |
| CCAGCCATTTATGATTTGAT+TGG | + | chr7_4:56860071-56860090 | Msa1165010:intron | 35.0% | |
| TCGTTAATAACTGAAACGGA+AGG | + | chr7_4:56860219-56860238 | Msa1165010:intron | 35.0% | |
| AATAACTGAAACGGAAGGTT+TGG | + | chr7_4:56860224-56860243 | Msa1165010:intron | 35.0% | |
| ATTCAAAACTCTTCCTAGAG+AGG | + | chr7_4:56860410-56860429 | Msa1165010:intron | 35.0% | |
| AATTCAACTCAATCCTCTCT+AGG | - | chr7_4:56860426-56860445 | None:intergenic | 35.0% | |
| AAGTATGAGTGTAGTTCCAA+GGG | - | chr7_4:56860631-56860650 | None:intergenic | 35.0% | |
| ! | TTTCTTAGATGAAAGTGCGA+GGG | - | chr7_4:56860729-56860748 | None:intergenic | 35.0% |
| !! | TTTTCTTAGATGAAAGTGCG+AGG | - | chr7_4:56860730-56860749 | None:intergenic | 35.0% |
| !!! | TTGACCATAGTTTGCTTTTC+TGG | + | chr7_4:56860777-56860796 | Msa1165010:intron | 35.0% |
| TTGACCAGAAAAGCAAACTA+TGG | - | chr7_4:56860784-56860803 | None:intergenic | 35.0% | |
| !!! | CTGCTTACAGTTTTGATTCA+AGG | - | chr7_4:56860822-56860841 | None:intergenic | 35.0% |
| CTTGAATCAAAACTGTAAGC+AGG | + | chr7_4:56860820-56860839 | Msa1165010:intron | 35.0% | |
| !!! | CGATATCGTCTTTGTTTTCA+AGG | - | chr7_4:56860848-56860867 | None:intergenic | 35.0% |
| ATATTTATGGTGAAGCAGTG+CGG | + | chr7_4:56861076-56861095 | Msa1165010:CDS | 35.0% | |
| ! | CCGTTTTCTGCAATTTTATG+AGG | - | chr7_4:56861107-56861126 | None:intergenic | 35.0% |
| !! | AAAACTGCAGCAGAAGTATT+TGG | - | chr7_4:56861174-56861193 | None:intergenic | 35.0% |
| ! | TTTTGATGCGTAATGGTTGT+TGG | + | chr7_4:56861190-56861209 | Msa1165010:CDS | 35.0% |
| !! | AAATATCCCAAGTTCTGAGA+CGG | - | chr7_4:56861229-56861248 | None:intergenic | 35.0% |
| GACTTGAATTTGCAGGAATA+AGG | + | chr7_4:56861350-56861369 | Msa1165010:intron | 35.0% | |
| GAATTTGCAGGAATAAGGAT+AGG | + | chr7_4:56861355-56861374 | Msa1165010:intron | 35.0% | |
| GTTGTCGTGAATAATCAAAG+TGG | + | chr7_4:56861378-56861397 | Msa1165010:CDS | 35.0% | |
| AGAGGCAGACAAATATAAAC+AGG | - | chr7_4:56861561-56861580 | None:intergenic | 35.0% | |
| GCAAAAAATTGAAAGAAGGG+AGG | + | chr7_4:56861581-56861600 | Msa1165010:three_prime_UTR | 35.0% | |
| GTAACTATACAACACACCAT+GGG | - | chr7_4:56861630-56861649 | None:intergenic | 35.0% | |
| TGTAACTATACAACACACCA+TGG | - | chr7_4:56861631-56861650 | None:intergenic | 35.0% | |
| CGATACGATGTTGAAGCAAT+AGG | + | chr7_4:56856790-56856809 | Msa1165010:CDS | 40.0% | |
| GGAGGAATGTATTTGGACAA+AGG | - | chr7_4:56856868-56856887 | None:intergenic | 40.0% | |
| AGGAGAAGGAGGAATGTATT+TGG | - | chr7_4:56856875-56856894 | None:intergenic | 40.0% | |
| !!! | TTGTTTTTGTGAGGAGGAGA+AGG | - | chr7_4:56856889-56856908 | None:intergenic | 40.0% |
| !!! | AGGTTGTTGTTTTTGTGAGG+AGG | - | chr7_4:56856895-56856914 | None:intergenic | 40.0% |
| TTCATCGCCATTAATGGTGA+TGG | - | chr7_4:56857001-56857020 | None:intergenic | 40.0% | |
| TAATCATCAGCGAATAGAGG+AGG | - | chr7_4:56857045-56857064 | None:intergenic | 40.0% | |
| GGTAAGATTTATCTCCCATG+AGG | - | chr7_4:56857140-56857159 | None:intergenic | 40.0% | |
| CATGGGAGATAAATCTTACC+AGG | + | chr7_4:56857140-56857159 | Msa1165010:CDS | 40.0% | |
| ! | TTAGTCCATGTTTCTATCCG+TGG | + | chr7_4:56857350-56857369 | Msa1165010:intron | 40.0% |
| AACTGTTGCAAAACTCACCA+CGG | - | chr7_4:56857370-56857389 | None:intergenic | 40.0% | |
| ! | TGGTGAGTTTTGCAACAGTT+TGG | + | chr7_4:56857370-56857389 | Msa1165010:intron | 40.0% |
| ACGTTGGGAATAATGCAAAC+GGG | - | chr7_4:56857539-56857558 | None:intergenic | 40.0% | |
| GACGTTGGGAATAATGCAAA+CGG | - | chr7_4:56857540-56857559 | None:intergenic | 40.0% | |
| GCTTGCTTCCATTTACTTTC+TGG | - | chr7_4:56857567-56857586 | None:intergenic | 40.0% | |
| ATGGAAGCAAGCTTCTGATT+TGG | + | chr7_4:56857575-56857594 | Msa1165010:CDS | 40.0% | |
| ! | GTTGACCGTGTTAGTTTAGA+TGG | + | chr7_4:56857618-56857637 | Msa1165010:CDS | 40.0% |
| ! | CCCTTTTCGTTTGTTTGGTT+TGG | + | chr7_4:56857730-56857749 | Msa1165010:intron | 40.0% |
| TCAATCCAGAACTAAGCAAG+TGG | + | chr7_4:56857836-56857855 | Msa1165010:intron | 40.0% | |
| TTTGTTGAGCTGTAGCATCT+TGG | - | chr7_4:56857895-56857914 | None:intergenic | 40.0% | |
| GCTACAGCTCAACAAAAAAG+AGG | + | chr7_4:56857899-56857918 | Msa1165010:CDS | 40.0% | |
| CAGCTCAACAAAAAAGAGGT+CGG | + | chr7_4:56857903-56857922 | Msa1165010:intron | 40.0% | |
| AAAGAGGTCGGTAGCTATAT+TGG | + | chr7_4:56857915-56857934 | Msa1165010:intron | 40.0% | |
| CTCTTGTCACTCAACTTCAT+AGG | + | chr7_4:56858194-56858213 | Msa1165010:CDS | 40.0% | |
| AGGTACATACTTTCTTGCCA+TGG | + | chr7_4:56858416-56858435 | Msa1165010:intron | 40.0% | |
| TCTTGCCATGGAAAATTGCT+TGG | + | chr7_4:56858428-56858447 | Msa1165010:CDS | 40.0% | |
| ! | ATTCTGGCTGACAGCATTAT+TGG | - | chr7_4:56858477-56858496 | None:intergenic | 40.0% |
| ! | TTGTTTCTCGGATCTAACCT+GGG | - | chr7_4:56858539-56858558 | None:intergenic | 40.0% |
| ! | TTTGTTTCTCGGATCTAACC+TGG | - | chr7_4:56858540-56858559 | None:intergenic | 40.0% |
| CAGGGCTATCATTATGATTG+TGG | + | chr7_4:56858627-56858646 | Msa1165010:intron | 40.0% | |
| GAACAGCAGAAAGAAAATGC+TGG | - | chr7_4:56858681-56858700 | None:intergenic | 40.0% | |
| GCTACCAAATGTGATATCAG+AGG | + | chr7_4:56858769-56858788 | Msa1165010:intron | 40.0% | |
| GGAACACTTTCTGTGTATGT+AGG | + | chr7_4:56858951-56858970 | Msa1165010:intron | 40.0% | |
| CAGTTGCAGTCATTTACTTC+AGG | + | chr7_4:56859074-56859093 | Msa1165010:CDS | 40.0% | |
| GATCATACCAGGTAATTCAG+TGG | - | chr7_4:56859253-56859272 | None:intergenic | 40.0% | |
| TTGGTCACAAAGATCATACC+AGG | - | chr7_4:56859264-56859283 | None:intergenic | 40.0% | |
| ! | ACAGCAGTCAGTTCTTCTTT+TGG | - | chr7_4:56859283-56859302 | None:intergenic | 40.0% |
| AGCAATGAGAACTCATTGTC+AGG | - | chr7_4:56859690-56859709 | None:intergenic | 40.0% | |
| AGTTCTCATTGCTCATGCTT+TGG | + | chr7_4:56859697-56859716 | Msa1165010:intron | 40.0% | |
| GTTCTCATTGCTCATGCTTT+GGG | + | chr7_4:56859698-56859717 | Msa1165010:intron | 40.0% | |
| ! | GAGGGCTTTGATAAAAACGT+AGG | + | chr7_4:56860253-56860272 | Msa1165010:intron | 40.0% |
| ! | GGCTTTGATAAAAACGTAGG+TGG | + | chr7_4:56860256-56860275 | Msa1165010:intron | 40.0% |
| GTACAAGAAAAGGGGATAAC+CGG | - | chr7_4:56860507-56860526 | None:intergenic | 40.0% | |
| GAAGTATGAGTGTAGTTCCA+AGG | - | chr7_4:56860632-56860651 | None:intergenic | 40.0% | |
| AAAATGCGTGAATGCTTTGC+AGG | + | chr7_4:56860870-56860889 | Msa1165010:CDS | 40.0% | |
| TATTTATGGTGAAGCAGTGC+GGG | + | chr7_4:56861077-56861096 | Msa1165010:CDS | 40.0% | |
| CAGCTTACATACTTATGCAG+AGG | + | chr7_4:56861142-56861161 | Msa1165010:CDS | 40.0% | |
| GTCTCAGAACTTGGGATATT+TGG | + | chr7_4:56861228-56861247 | Msa1165010:CDS | 40.0% | |
| ATATCATCATCTGACGAAGG+TGG | + | chr7_4:56861420-56861439 | Msa1165010:CDS | 40.0% | |
| TATCATCATCTGACGAAGGT+GGG | + | chr7_4:56861421-56861440 | Msa1165010:CDS | 40.0% | |
| ! | TAGAGCACCTCTAACTTATC+TGG | + | chr7_4:56861491-56861510 | Msa1165010:three_prime_UTR | 40.0% |
| ! | AGAGCACCTCTAACTTATCT+GGG | + | chr7_4:56861492-56861511 | Msa1165010:three_prime_UTR | 40.0% |
| CAGGAGGCTCAAATGATAAT+GGG | - | chr7_4:56861542-56861561 | None:intergenic | 40.0% | |
| ACAGGAGGCTCAAATGATAA+TGG | - | chr7_4:56861543-56861562 | None:intergenic | 40.0% | |
| GGCAGACAAATATAAACAGG+AGG | - | chr7_4:56861558-56861577 | None:intergenic | 40.0% | |
| CGATGTTGAAGCAATAGGCA+TGG | + | chr7_4:56856795-56856814 | Msa1165010:CDS | 45.0% | |
| ! | TTTTTGTGAGGAGGAGAAGG+AGG | - | chr7_4:56856886-56856905 | None:intergenic | 45.0% |
| ACACCTGCCATCACCATTAA+TGG | + | chr7_4:56856991-56857010 | Msa1165010:CDS | 45.0% | |
| AGAAGAAGGAGAAGAAGACC+TGG | - | chr7_4:56857161-56857180 | None:intergenic | 45.0% | |
| ACTCACCACGGATAGAAACA+TGG | - | chr7_4:56857358-56857377 | None:intergenic | 45.0% | |
| CAGAAATCAGGAATGGTTCC+TGG | + | chr7_4:56857495-56857514 | Msa1165010:intron | 45.0% | |
| CGTTGGGAATAATGCAAACG+GGG | - | chr7_4:56857538-56857557 | None:intergenic | 45.0% | |
| ! | GGTCACCCTTTTCGTTTGTT+TGG | + | chr7_4:56857725-56857744 | Msa1165010:intron | 45.0% |
| TTCGTCCACTTGCTTAGTTC+TGG | - | chr7_4:56857844-56857863 | None:intergenic | 45.0% | |
| ! | CCAGACCAAGCAATTTTCCA+TGG | - | chr7_4:56858436-56858455 | None:intergenic | 45.0% |
| CCATGGAAAATTGCTTGGTC+TGG | + | chr7_4:56858433-56858452 | Msa1165010:CDS | 45.0% | |
| GCTTGGTCTGGATTCAGAAA+AGG | + | chr7_4:56858445-56858464 | Msa1165010:CDS | 45.0% | |
| GGAGTGAGTATAATAACCCC+AGG | + | chr7_4:56858519-56858538 | Msa1165010:CDS | 45.0% | |
| TGTTTCTCGGATCTAACCTG+GGG | - | chr7_4:56858538-56858557 | None:intergenic | 45.0% | |
| !! | TCCTTAGCTTTGAACACGCA+TGG | + | chr7_4:56858867-56858886 | Msa1165010:CDS | 45.0% |
| ACCATGCGTGTTCAAAGCTA+AGG | - | chr7_4:56858871-56858890 | None:intergenic | 45.0% | |
| ATGGCAGAAGTTGACCAAGA+AGG | + | chr7_4:56858912-56858931 | Msa1165010:CDS | 45.0% | |
| !! | TGGCCACTTACTGATTCTGA+AGG | - | chr7_4:56859124-56859143 | None:intergenic | 45.0% |
| GGTTAACCCACTGAATTACC+TGG | + | chr7_4:56859243-56859262 | Msa1165010:intron | 45.0% | |
| ATATGCAGGAATGGAGAGCT+AGG | + | chr7_4:56859734-56859753 | Msa1165010:intron | 45.0% | |
| TGGCACCAAGAAGATTCAAC+AGG | + | chr7_4:56859813-56859832 | Msa1165010:CDS | 45.0% | |
| AGATACCTCTCAAGAACACC+TGG | - | chr7_4:56859850-56859869 | None:intergenic | 45.0% | |
| ! | CAAGCAGAAAAGCATAGGGT+CGG | - | chr7_4:56860178-56860197 | None:intergenic | 45.0% |
| ! | TGGCCAAGCAGAAAAGCATA+GGG | - | chr7_4:56860182-56860201 | None:intergenic | 45.0% |
| ! | ACGGAAGGTTTGGAATAGTG+AGG | + | chr7_4:56860234-56860253 | Msa1165010:intron | 45.0% |
| ! | CGGAAGGTTTGGAATAGTGA+GGG | + | chr7_4:56860235-56860254 | Msa1165010:intron | 45.0% |
| ACTGTGGAGTTTGGATGACT+CGG | + | chr7_4:56860893-56860912 | Msa1165010:CDS | 45.0% | |
| !! | GCTGCAGTTTTGATGCGTAA+TGG | + | chr7_4:56861183-56861202 | Msa1165010:CDS | 45.0% |
| CGTAATGCTTAACATCCGCT+GGG | + | chr7_4:56861328-56861347 | Msa1165010:intron | 45.0% | |
| ATCATCATCTGACGAAGGTG+GGG | + | chr7_4:56861422-56861441 | Msa1165010:CDS | 45.0% | |
| !! | TCGCCATTAATGGTGATGGC+AGG | - | chr7_4:56856997-56857016 | None:intergenic | 50.0% |
| TCATCAGCGAATAGAGGAGG+AGG | - | chr7_4:56857042-56857061 | None:intergenic | 50.0% | |
| CTTGTTTGGGCCTCTCTTCA+CGG | + | chr7_4:56857111-56857130 | Msa1165010:CDS | 50.0% | |
| TCTCTTCACGGTCTCCTCAT+GGG | + | chr7_4:56857123-56857142 | Msa1165010:CDS | 50.0% | |
| !! | ACCAAACGGTGATGGAGACA+TGG | - | chr7_4:56857258-56857277 | None:intergenic | 50.0% |
| ATCAGGAATGGTTCCTGGTG+TGG | + | chr7_4:56857500-56857519 | Msa1165010:CDS | 50.0% | |
| TCAGGAATGGTTCCTGGTGT+GGG | + | chr7_4:56857501-56857520 | Msa1165010:CDS | 50.0% | |
| TGGCTGACAGCATTATTGGC+AGG | - | chr7_4:56858473-56858492 | None:intergenic | 50.0% | |
| ! | CTCACTCCAAGCTTTAGCCA+AGG | - | chr7_4:56858507-56858526 | None:intergenic | 50.0% |
| GCAGTCATTTACTTCAGGGC+TGG | + | chr7_4:56859079-56859098 | Msa1165010:CDS | 50.0% | |
| ! | GTTGATTGGTCGGTACAGCT+TGG | + | chr7_4:56859473-56859492 | Msa1165010:intron | 50.0% |
| ATGGAGAGCTAGGCTACTGA+TGG | + | chr7_4:56859744-56859763 | Msa1165010:CDS | 50.0% | |
| CAACAGGAACTTGCAAAGCC+AGG | + | chr7_4:56859829-56859848 | Msa1165010:CDS | 50.0% | |
| CAAAGCCAGGTGTTCTTGAG+AGG | + | chr7_4:56859842-56859861 | Msa1165010:CDS | 50.0% | |
| GAAGTGAGATCGCCTTCTTC+TGG | + | chr7_4:56859991-56860010 | Msa1165010:intron | 50.0% | |
| ! | CGACCCTATGCTTTTCTGCT+TGG | + | chr7_4:56860176-56860195 | Msa1165010:intron | 50.0% |
| ! | CTGGCCAAGCAGAAAAGCAT+AGG | - | chr7_4:56860183-56860202 | None:intergenic | 50.0% |
| ! | CTTTTCTGCTTGGCCAGTAG+TGG | + | chr7_4:56860186-56860205 | Msa1165010:intron | 50.0% |
| CGATGCATTCTTGCCACTAC+TGG | - | chr7_4:56860202-56860221 | None:intergenic | 50.0% | |
| GTGAATGCTTTGCAGGACTG+TGG | + | chr7_4:56860877-56860896 | Msa1165010:CDS | 50.0% | |
| CTTTGCAGGACTGTGGAGTT+TGG | + | chr7_4:56860884-56860903 | Msa1165010:CDS | 50.0% | |
| GTAATGAAGCCCCAGAGAGA+AGG | + | chr7_4:56860954-56860973 | Msa1165010:CDS | 50.0% | |
| AGTACCTCCTCCTTCTCTCT+GGG | - | chr7_4:56860967-56860986 | None:intergenic | 50.0% | |
| TAGTACCTCCTCCTTCTCTC+TGG | - | chr7_4:56860968-56860987 | None:intergenic | 50.0% | |
| GCGTAATGGTTGTTGGCACA+AGG | + | chr7_4:56861197-56861216 | Msa1165010:CDS | 50.0% | |
| GCGTAATGCTTAACATCCGC+TGG | + | chr7_4:56861327-56861346 | Msa1165010:intron | 50.0% | |
| CCTGCAAATTCAAGTCCCAG+CGG | - | chr7_4:56861346-56861365 | None:intergenic | 50.0% | |
| ! | GAGGTGCTCTACATCAAGTG+AGG | - | chr7_4:56861482-56861501 | None:intergenic | 50.0% |
| TCAGCGAATAGAGGAGGAGG+AGG | - | chr7_4:56857039-56857058 | None:intergenic | 55.0% | |
| CATGAGGAGACCGTGAAGAG+AGG | - | chr7_4:56857124-56857143 | None:intergenic | 55.0% | |
| CTCTCTTCACGGTCTCCTCA+TGG | + | chr7_4:56857122-56857141 | Msa1165010:CDS | 55.0% | |
| GCCATGTCTCCATCACCGTT+TGG | + | chr7_4:56857254-56857273 | Msa1165010:intron | 55.0% | |
| GCATGCATCAATCCCACACC+AGG | - | chr7_4:56857516-56857535 | None:intergenic | 55.0% | |
| ! | CCAAGCTTTAGCCAAGGCCT+CGG | - | chr7_4:56858501-56858520 | None:intergenic | 55.0% |
| ATGAAGCCCCAGAGAGAAGG+AGG | + | chr7_4:56860957-56860976 | Msa1165010:CDS | 55.0% | |
| GTACCTCCTCCTTCTCTCTG+GGG | - | chr7_4:56860966-56860985 | None:intergenic | 55.0% | |
| ACCACGCCGTCTCAGAACTT+GGG | + | chr7_4:56861220-56861239 | Msa1165010:CDS | 55.0% | |
| CCGCTGGGACTTGAATTTGC+AGG | + | chr7_4:56861343-56861362 | Msa1165010:intron | 55.0% | |
| ! | GCTGCTGCTGCTTCTGCTTC+TGG | + | chr7_4:56856817-56856836 | Msa1165010:CDS | 60.0% |
| TGCTGTCAGCCAGAATGCCG+AGG | + | chr7_4:56858481-56858500 | Msa1165010:CDS | 60.0% | |
| TAGCCAAGGCCTCGGCATTC+TGG | - | chr7_4:56858493-56858512 | None:intergenic | 60.0% | |
| CCGAGGCCTTGGCTAAAGCT+TGG | + | chr7_4:56858498-56858517 | Msa1165010:CDS | 60.0% | |
| AAGCCCCAGAGAGAAGGAGG+AGG | + | chr7_4:56860960-56860979 | Msa1165010:CDS | 60.0% | |
| GACCACGCCGTCTCAGAACT+TGG | + | chr7_4:56861219-56861238 | Msa1165010:CDS | 60.0% | |
| !! | TCCCAAGTTCTGAGACGGCG+TGG | - | chr7_4:56861224-56861243 | None:intergenic | 60.0% |
| CAGCCAGAATGCCGAGGCCT+TGG | + | chr7_4:56858487-56858506 | Msa1165010:CDS | 65.0% | |
| GACGAAGGTGGGGTTGCAGC+TGG | + | chr7_4:56861432-56861451 | Msa1165010:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 56856757 | 56861704 | 56856757 | ID=Msa1165010;Name=Msa1165010 |
| chr7_4 | mRNA | 56856757 | 56861704 | 56856757 | ID=Msa1165010-mRNA-1;Parent=Msa1165010;Name=Msa1165010-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.90|0.75|1|0.90|1|12|216|585 |
| chr7_4 | exon | 56856757 | 56857161 | 56856757 | ID=Msa1165010-mRNA-1:exon:17004;Parent=Msa1165010-mRNA-1 |
| chr7_4 | exon | 56857498 | 56857667 | 56857498 | ID=Msa1165010-mRNA-1:exon:17005;Parent=Msa1165010-mRNA-1 |
| chr7_4 | exon | 56857845 | 56857920 | 56857845 | ID=Msa1165010-mRNA-1:exon:17006;Parent=Msa1165010-mRNA-1 |
| chr7_4 | exon | 56858085 | 56858215 | 56858085 | ID=Msa1165010-mRNA-1:exon:17007;Parent=Msa1165010-mRNA-1 |
| chr7_4 | exon | 56858418 | 56858540 | 56858418 | ID=Msa1165010-mRNA-1:exon:17008;Parent=Msa1165010-mRNA-1 |
| chr7_4 | exon | 56858630 | 56858727 | 56858630 | ID=Msa1165010-mRNA-1:exon:17009;Parent=Msa1165010-mRNA-1 |
| chr7_4 | exon | 56858859 | 56858964 | 56858859 | ID=Msa1165010-mRNA-1:exon:17010;Parent=Msa1165010-mRNA-1 |
| chr7_4 | exon | 56859063 | 56859132 | 56859063 | ID=Msa1165010-mRNA-1:exon:17011;Parent=Msa1165010-mRNA-1 |
| chr7_4 | exon | 56859742 | 56859863 | 56859742 | ID=Msa1165010-mRNA-1:exon:17012;Parent=Msa1165010-mRNA-1 |
| chr7_4 | exon | 56860842 | 56860981 | 56860842 | ID=Msa1165010-mRNA-1:exon:17013;Parent=Msa1165010-mRNA-1 |
| chr7_4 | exon | 56861070 | 56861262 | 56861070 | ID=Msa1165010-mRNA-1:exon:17014;Parent=Msa1165010-mRNA-1 |
| chr7_4 | exon | 56861365 | 56861704 | 56861365 | ID=Msa1165010-mRNA-1:exon:17015;Parent=Msa1165010-mRNA-1 |
| chr7_4 | CDS | 56856757 | 56857161 | 56856757 | ID=Msa1165010-mRNA-1:cds;Parent=Msa1165010-mRNA-1 |
| chr7_4 | CDS | 56857498 | 56857667 | 56857498 | ID=Msa1165010-mRNA-1:cds;Parent=Msa1165010-mRNA-1 |
| chr7_4 | CDS | 56857845 | 56857920 | 56857845 | ID=Msa1165010-mRNA-1:cds;Parent=Msa1165010-mRNA-1 |
| chr7_4 | CDS | 56858085 | 56858215 | 56858085 | ID=Msa1165010-mRNA-1:cds;Parent=Msa1165010-mRNA-1 |
| chr7_4 | CDS | 56858418 | 56858540 | 56858418 | ID=Msa1165010-mRNA-1:cds;Parent=Msa1165010-mRNA-1 |
| chr7_4 | CDS | 56858630 | 56858727 | 56858630 | ID=Msa1165010-mRNA-1:cds;Parent=Msa1165010-mRNA-1 |
| chr7_4 | CDS | 56858859 | 56858964 | 56858859 | ID=Msa1165010-mRNA-1:cds;Parent=Msa1165010-mRNA-1 |
| chr7_4 | CDS | 56859063 | 56859132 | 56859063 | ID=Msa1165010-mRNA-1:cds;Parent=Msa1165010-mRNA-1 |
| chr7_4 | CDS | 56859742 | 56859863 | 56859742 | ID=Msa1165010-mRNA-1:cds;Parent=Msa1165010-mRNA-1 |
| chr7_4 | CDS | 56860842 | 56860981 | 56860842 | ID=Msa1165010-mRNA-1:cds;Parent=Msa1165010-mRNA-1 |
| chr7_4 | CDS | 56861070 | 56861262 | 56861070 | ID=Msa1165010-mRNA-1:cds;Parent=Msa1165010-mRNA-1 |
| chr7_4 | CDS | 56861365 | 56861488 | 56861365 | ID=Msa1165010-mRNA-1:cds;Parent=Msa1165010-mRNA-1 |
| chr7_4 | three_prime_UTR | 56861489 | 56861704 | 56861489 | ID=Msa1165010-mRNA-1:three_prime_utr;Parent=Msa1165010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
