Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610120 | XP_024628984.1 | 91.045 | 268 | 8 | 1 | 1 | 268 | 1 | 252 | 3.93e-177 | 499 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610120 | A0A072U4J5 | 91.045 | 268 | 8 | 1 | 1 | 268 | 1 | 252 | 1.88e-177 | 499 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0610120 | 0.817739 | 2.819900e-52 | -8.615850e-47 |
| Msa0610120 | Msa0880140 | 0.812832 | 3.476657e-51 | -8.615850e-47 |
| Msa0610120 | Msa1082500 | 0.805494 | 1.299550e-49 | -8.615850e-47 |
| Msa0610120 | Msa1114250 | 0.800425 | 1.449772e-48 | -8.615850e-47 |
| Msa0157290 | Msa0610120 | 0.817524 | 3.153896e-52 | -8.615850e-47 |
| Msa0436050 | Msa0610120 | 0.818469 | 1.928263e-52 | -8.615850e-47 |
| Msa0264150 | Msa0610120 | 0.806537 | 7.841008e-50 | -8.615850e-47 |
| Msa0484780 | Msa0610120 | 0.801967 | 7.011630e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610120 | MtrunA17_Chr8g0381391 | 92.021 | 188 | 13 | 1 | 1 | 186 | 1 | 188 | 1.40e-124 | 354 |
| Msa0610120 | MtrunA17_Chr2g0277671 | 63.498 | 263 | 80 | 1 | 1 | 263 | 1 | 247 | 5.50e-114 | 331 |
| Msa0610120 | MtrunA17_Chr3g0135701 | 38.367 | 245 | 135 | 1 | 19 | 263 | 32 | 260 | 1.92e-59 | 191 |
| Msa0610120 | MtrunA17_Chr1g0151401 | 36.800 | 250 | 140 | 2 | 24 | 271 | 45 | 278 | 4.64e-51 | 170 |
| Msa0610120 | MtrunA17_Chr8g0381381 | 93.243 | 74 | 5 | 0 | 195 | 268 | 1 | 74 | 5.69e-44 | 145 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610120 | AT1G71190.1 | 59.160 | 262 | 90 | 2 | 1 | 261 | 1 | 246 | 3.20e-103 | 303 |
| Msa0610120 | AT1G71190.2 | 48.659 | 261 | 78 | 2 | 1 | 261 | 1 | 205 | 5.43e-81 | 246 |
| Msa0610120 | AT5G11870.1 | 39.922 | 258 | 135 | 3 | 10 | 263 | 17 | 258 | 2.00e-67 | 212 |
| Msa0610120 | AT5G11870.2 | 39.922 | 258 | 135 | 3 | 10 | 263 | 17 | 258 | 3.31e-67 | 211 |
Find 102 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATACTCAAATTCAATTTAA+TGG | 0.089742 | 4_2:-57807058 | None:intergenic |
| TTCATGGTTATTGGTCTTAT+TGG | 0.136333 | 4_2:+57807556 | Msa0610120:CDS |
| TTTGAGTATATTTCTTAAAA+AGG | 0.201986 | 4_2:+57807071 | Msa0610120:five_prime_UTR |
| AATTTACCTTTCATGGTTAT+TGG | 0.214237 | 4_2:+57807547 | Msa0610120:CDS |
| GATATCAAATTTACCTTTCA+TGG | 0.240038 | 4_2:+57807540 | Msa0610120:CDS |
| TCATGGTTATTGGTCTTATT+GGG | 0.256333 | 4_2:+57807557 | Msa0610120:CDS |
| GAGAATGTAAGAAGAGAAAA+TGG | 0.263432 | 4_2:-57807248 | None:intergenic |
| GCTGATAAGCGTGAATTCTT+TGG | 0.312517 | 4_2:+57807394 | Msa0610120:CDS |
| CAAGGTGCTTAATTAGTCAT+AGG | 0.338494 | 4_2:+57810771 | Msa0610120:three_prime_UTR |
| GCCGTGACGGTGGCGGTTGT+CGG | 0.343112 | 4_2:-57807180 | None:intergenic |
| ATCATAGCAGCCATTATTAG+AGG | 0.344829 | 4_2:-57808410 | None:intergenic |
| CCTTGTTTGCGACAGGTTGC+CGG | 0.348888 | 4_2:+57808203 | Msa0610120:CDS |
| GCTGTGACTTCAGTAGGTTT+TGG | 0.350844 | 4_2:+57808144 | Msa0610120:CDS |
| TATCTTCAAATTGTAGTGTT+TGG | 0.354140 | 4_2:+57810864 | Msa0610120:three_prime_UTR |
| GATATCACATTAAGTGCATT+GGG | 0.394778 | 4_2:-57807523 | None:intergenic |
| CAAACAAGGCCATTATCATT+TGG | 0.396217 | 4_2:-57808189 | None:intergenic |
| CATCTCGGGCCAAATGATAA+TGG | 0.399081 | 4_2:+57808180 | Msa0610120:CDS |
| TGACGGTCTTAGCCGCCATC+AGG | 0.403816 | 4_2:-57807155 | None:intergenic |
| ACAGAAAGGTTGCGCTACTA+AGG | 0.403949 | 4_2:+57810636 | Msa0610120:three_prime_UTR |
| TGATATCACATTAAGTGCAT+TGG | 0.411630 | 4_2:-57807524 | None:intergenic |
| GGGTCTGCATATTATCATCT+CGG | 0.419154 | 4_2:+57808165 | Msa0610120:CDS |
| TGATCTCAATGTGCAGCTAT+AGG | 0.434155 | 4_2:+57810570 | Msa0610120:CDS |
| CAGCAATGCATGATACAGTT+TGG | 0.435458 | 4_2:-57809482 | None:intergenic |
| TAGCAAATTCAATAACTTGA+AGG | 0.438934 | 4_2:-57809826 | None:intergenic |
| TATGTGGCTGTGACTTCAGT+AGG | 0.442492 | 4_2:+57808138 | Msa0610120:CDS |
| ATCATAGAACACTAACTGAA+TGG | 0.444251 | 4_2:-57810931 | None:intergenic |
| GCGCTACTAAGGGTAGGTTT+TGG | 0.444462 | 4_2:+57810647 | Msa0610120:three_prime_UTR |
| ACAGTTTGGACCAGAAGATA+TGG | 0.451186 | 4_2:-57809468 | None:intergenic |
| TGACATCCGTCCATATCTTC+TGG | 0.451894 | 4_2:+57809458 | Msa0610120:CDS |
| CACATTCAACGTATTGGCTA+TGG | 0.456352 | 4_2:+57809541 | Msa0610120:CDS |
| ATACTGCATTTGCTGTACTA+AGG | 0.463705 | 4_2:+57810533 | Msa0610120:CDS |
| TTATCTTGTCCGATCCCTGA+TGG | 0.464197 | 4_2:+57807140 | Msa0610120:five_prime_UTR |
| GTCACTGTATCACAATTGAT+AGG | 0.466310 | 4_2:-57810805 | None:intergenic |
| TGTACACACATTCAACGTAT+TGG | 0.471093 | 4_2:+57809535 | Msa0610120:CDS |
| TGAAAGGGTTGATGCAAAGA+AGG | 0.472111 | 4_2:+57808370 | Msa0610120:CDS |
| TGCTGTACTAAGGGCAAAGA+AGG | 0.474364 | 4_2:+57810543 | Msa0610120:CDS |
| ACGTATTGGCTATGGGCTGC+AGG | 0.475369 | 4_2:+57809549 | Msa0610120:CDS |
| ATCTGAGGTTGAGGAATGGA+TGG | 0.477120 | 4_2:-57807358 | None:intergenic |
| AAAGTTCCCAAGGTGAGCTA+TGG | 0.477754 | 4_2:+57808100 | Msa0610120:intron |
| CACGCTTATCAGCGAAATCA+TGG | 0.486553 | 4_2:-57807384 | None:intergenic |
| GGCAATTCTCATCATTGAAA+GGG | 0.486782 | 4_2:+57808355 | Msa0610120:CDS |
| GTGAAGAGATATATCAAGAG+TGG | 0.487336 | 4_2:+57810899 | Msa0610120:three_prime_UTR |
| CTATGATAAGTAGTGTGTAT+TGG | 0.497696 | 4_2:+57808426 | Msa0610120:CDS |
| AAGAAGAGAAAATGGGTCAC+TGG | 0.500287 | 4_2:-57807240 | None:intergenic |
| AAGTTCCCAAGGTGAGCTAT+GGG | 0.503035 | 4_2:+57808101 | Msa0610120:intron |
| GGTCTGCATATTATCATCTC+GGG | 0.504148 | 4_2:+57808166 | Msa0610120:CDS |
| GAAGCATTTATCTGCTGGAA+TGG | 0.507745 | 4_2:+57809740 | Msa0610120:CDS |
| TCATAGAACACTAACTGAAT+GGG | 0.511060 | 4_2:-57810930 | None:intergenic |
| TCATGGTACATCTGAGGTTG+AGG | 0.512450 | 4_2:-57807367 | None:intergenic |
| ACACTGAAGCATTTATCTGC+TGG | 0.516057 | 4_2:+57809735 | Msa0610120:CDS |
| AGAATGTAAGAAGAGAAAAT+GGG | 0.527684 | 4_2:-57807247 | None:intergenic |
| CCGGCAACCTGTCGCAAACA+AGG | 0.527931 | 4_2:-57808203 | None:intergenic |
| TGGCAATTCTCATCATTGAA+AGG | 0.531318 | 4_2:+57808354 | Msa0610120:CDS |
| ACATTCAACGTATTGGCTAT+GGG | 0.538479 | 4_2:+57809542 | Msa0610120:CDS |
| AGCATTATTGTTAAGATGAG+AGG | 0.539941 | 4_2:-57809765 | None:intergenic |
| ATAATGGCCTTGTTTGCGAC+AGG | 0.541492 | 4_2:+57808196 | Msa0610120:CDS |
| ATGCATTGCTGTACCTCTCA+TGG | 0.548690 | 4_2:+57809494 | Msa0610120:CDS |
| AAGGTGCTTAATTAGTCATA+GGG | 0.551925 | 4_2:+57810772 | Msa0610120:three_prime_UTR |
| TGATAAGTAGTGTGTATTGG+AGG | 0.553513 | 4_2:+57808429 | Msa0610120:CDS |
| TACTGCATTTGCTGTACTAA+GGG | 0.554169 | 4_2:+57810534 | Msa0610120:CDS |
| AGAAGGCACTGCACAAGCAT+GGG | 0.555088 | 4_2:+57807294 | Msa0610120:CDS |
| TAAGCAACAACAATGAAAGA+AGG | 0.556453 | 4_2:+57807277 | Msa0610120:exon |
| TCCAACCCCATAGCTCACCT+TGG | 0.558066 | 4_2:-57808107 | None:intergenic |
| AAGAAGGCACTGCACAAGCA+TGG | 0.560374 | 4_2:+57807293 | Msa0610120:CDS |
| TTAGTGTTCTATGATCTGTA+AGG | 0.564678 | 4_2:+57810939 | Msa0610120:three_prime_UTR |
| CACTGCATAAATCAATCTAT+CGG | 0.565169 | 4_2:-57809688 | None:intergenic |
| CCAACCCCATAGCTCACCTT+GGG | 0.566654 | 4_2:-57808106 | None:intergenic |
| AGAAGAGAAAATGGGTCACT+GGG | 0.566918 | 4_2:-57807239 | None:intergenic |
| ATAAGACCAATAACCATGAA+AGG | 0.567274 | 4_2:-57807553 | None:intergenic |
| CAATAATGCTTGCAAAGAGG+AGG | 0.573117 | 4_2:+57809778 | Msa0610120:CDS |
| TCTTAGCCGCCATCAGGGAT+CGG | 0.577729 | 4_2:-57807149 | None:intergenic |
| GAGATATATCAAGAGTGGAA+TGG | 0.582513 | 4_2:+57810904 | Msa0610120:three_prime_UTR |
| GTCTCTTGCATCATAGCTAG+AGG | 0.584140 | 4_2:-57809663 | None:intergenic |
| ATTTATGGCCAAAGTTCCCA+AGG | 0.586195 | 4_2:+57808090 | Msa0610120:intron |
| GCCGACAACCGCCACCGTCA+CGG | 0.589387 | 4_2:+57807179 | Msa0610120:five_prime_UTR |
| GAAAGGGTTGATGCAAAGAA+GGG | 0.591831 | 4_2:+57808371 | Msa0610120:CDS |
| TCTGAGGTTGAGGAATGGAT+GGG | 0.594479 | 4_2:-57807357 | None:intergenic |
| TGCACAAGCATGGGTAGTTG+CGG | 0.596121 | 4_2:+57807303 | Msa0610120:CDS |
| CAGAAAGGTTGCGCTACTAA+GGG | 0.596339 | 4_2:+57810637 | Msa0610120:three_prime_UTR |
| CCCAAGGTGAGCTATGGGGT+TGG | 0.597377 | 4_2:+57808106 | Msa0610120:CDS |
| GGTGGCGGTTGTCGGCGTGA+CGG | 0.599568 | 4_2:-57807172 | None:intergenic |
| CATGAATGCCGTGACGGTGG+CGG | 0.602725 | 4_2:-57807187 | None:intergenic |
| AAGGTTGCGCTACTAAGGGT+AGG | 0.606006 | 4_2:+57810641 | Msa0610120:three_prime_UTR |
| TGTTGTACTGCAAAAGAACA+AGG | 0.608117 | 4_2:+57810728 | Msa0610120:three_prime_UTR |
| TAACAATAATGCTTGCAAAG+AGG | 0.614252 | 4_2:+57809775 | Msa0610120:CDS |
| TACGTTGAATGTGTGTACAT+TGG | 0.614381 | 4_2:-57809531 | None:intergenic |
| GTTGAATGTGTGTACATTGG+AGG | 0.614731 | 4_2:-57809528 | None:intergenic |
| GACGGTCTTAGCCGCCATCA+GGG | 0.619575 | 4_2:-57807154 | None:intergenic |
| TGGGGAAAAGTAGCAACGGA+AGG | 0.621251 | 4_2:-57807220 | None:intergenic |
| TCTTGTCCGATCCCTGATGG+CGG | 0.630620 | 4_2:+57807143 | Msa0610120:five_prime_UTR |
| GGGGAAAAGTAGCAACGGAA+GGG | 0.644007 | 4_2:-57807219 | None:intergenic |
| GCGAAATCATGGTACATCTG+AGG | 0.649052 | 4_2:-57807373 | None:intergenic |
| CTGAGGTTGAGGAATGGATG+GGG | 0.649792 | 4_2:-57807356 | None:intergenic |
| TAGCATGAATGCCGTGACGG+TGG | 0.656650 | 4_2:-57807190 | None:intergenic |
| ATGTAGCATGAATGCCGTGA+CGG | 0.664100 | 4_2:-57807193 | None:intergenic |
| TCTCTTGCATCATAGCTAGA+GGG | 0.668367 | 4_2:-57809662 | None:intergenic |
| GATACAGTGACATTCACCAT+AGG | 0.670135 | 4_2:+57810817 | Msa0610120:three_prime_UTR |
| GTACATCTGAGGTTGAGGAA+TGG | 0.671389 | 4_2:-57807362 | None:intergenic |
| TCACTGGGGAAAAGTAGCAA+CGG | 0.685482 | 4_2:-57807224 | None:intergenic |
| TTTGGACCAGAAGATATGGA+CGG | 0.703451 | 4_2:-57809464 | None:intergenic |
| AGTTCCCAAGGTGAGCTATG+GGG | 0.714963 | 4_2:+57808102 | Msa0610120:intron |
| GAAGAGAAAATGGGTCACTG+GGG | 0.766225 | 4_2:-57807238 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTATTGTTTTTC+AGG | + | chr4_2:57807496-57807515 | Msa0610120:intron | 10.0% |
| !!! | TAATAAACAAATTTTAAACA+AGG | + | chr4_2:57810009-57810028 | Msa0610120:intron | 10.0% |
| !! | TTTGAGTATATTTCTTAAAA+AGG | + | chr4_2:57807071-57807090 | Msa0610120:five_prime_UTR | 15.0% |
| !!! | ATGATTGATAATTCAATTTA+TGG | + | chr4_2:57808075-57808094 | Msa0610120:intron | 15.0% |
| !! | TTAAGTGCTATAAAATAAAA+AGG | + | chr4_2:57809249-57809268 | Msa0610120:intron | 15.0% |
| !! | TAAGTGCTATAAAATAAAAA+GGG | + | chr4_2:57809250-57809269 | Msa0610120:intron | 15.0% |
| !!! | AATTTGTTTATTAATGTTTG+AGG | - | chr4_2:57810002-57810021 | None:intergenic | 15.0% |
| !!! | AAATTTTAAACAAGGAATTT+GGG | + | chr4_2:57810017-57810036 | Msa0610120:intron | 15.0% |
| !! | AAAAATCTTTCATACTAAAA+AGG | - | chr4_2:57810064-57810083 | None:intergenic | 15.0% |
| !!! | TTTTTAGTATGAAAGATTTT+TGG | + | chr4_2:57810063-57810082 | Msa0610120:intron | 15.0% |
| !!! | TTCAATTTTTCCTCTAATAA+TGG | + | chr4_2:57808400-57808419 | Msa0610120:CDS | 20.0% |
| !! | TGTCATAGATATATGATTTA+TGG | + | chr4_2:57808610-57808629 | Msa0610120:intron | 20.0% |
| !! | TATTTGTGATTCATAATATC+AGG | + | chr4_2:57808633-57808652 | Msa0610120:intron | 20.0% |
| !! | ATTTCAAGATTCAAAAGAAT+TGG | - | chr4_2:57808687-57808706 | None:intergenic | 20.0% |
| !! | TATATAAAATGAAAAAAGCC+TGG | + | chr4_2:57808954-57808973 | Msa0610120:intron | 20.0% |
| !!! | CTCTAAAAAGTTCATTAAAT+GGG | - | chr4_2:57809190-57809209 | None:intergenic | 20.0% |
| !!! | ACTCTAAAAAGTTCATTAAA+TGG | - | chr4_2:57809191-57809210 | None:intergenic | 20.0% |
| !!! | TACAACTTTTTATTATGTGT+TGG | + | chr4_2:57809852-57809871 | Msa0610120:CDS | 20.0% |
| !!! | CAAATTTTAAACAAGGAATT+TGG | + | chr4_2:57810016-57810035 | Msa0610120:intron | 20.0% |
| !! | AATGATATCATAATATCCAA+AGG | - | chr4_2:57810350-57810369 | None:intergenic | 20.0% |
| !!! | AATTTCTTTTGTTGACAATA+TGG | + | chr4_2:57810372-57810391 | Msa0610120:intron | 20.0% |
| !!! | ATTTCTTTTGTTGACAATAT+GGG | + | chr4_2:57810373-57810392 | Msa0610120:intron | 20.0% |
| !!! | TTCTGTCTTTTTCTTTTATA+GGG | - | chr4_2:57810622-57810641 | None:intergenic | 20.0% |
| !!! | TTTCTGTCTTTTTCTTTTAT+AGG | - | chr4_2:57810623-57810642 | None:intergenic | 20.0% |
| !! | TATAAAAGAAAAAGACAGAA+AGG | + | chr4_2:57810622-57810641 | Msa0610120:three_prime_UTR | 20.0% |
| ! | AGAATGTAAGAAGAGAAAAT+GGG | - | chr4_2:57807250-57807269 | None:intergenic | 25.0% |
| ! | GATATCAAATTTACCTTTCA+TGG | + | chr4_2:57807540-57807559 | Msa0610120:CDS | 25.0% |
| ! | AATTTACCTTTCATGGTTAT+TGG | + | chr4_2:57807547-57807566 | Msa0610120:CDS | 25.0% |
| !!! | GTAGCAACTATTTTAACTTA+AGG | + | chr4_2:57807596-57807615 | Msa0610120:CDS | 25.0% |
| ! | ATAGTTTGGTATAATCACTT+AGG | + | chr4_2:57807638-57807657 | Msa0610120:intron | 25.0% |
| ! | AAAACAGCTTATAGCATATA+CGG | - | chr4_2:57807790-57807809 | None:intergenic | 25.0% |
| ! | ACATGAACAAACAAAAATCA+AGG | - | chr4_2:57808307-57808326 | None:intergenic | 25.0% |
| ! | GGAAAATAAAAACAAAATCC+AGG | - | chr4_2:57808505-57808524 | None:intergenic | 25.0% |
| ! | AGAAATTCATCAAACTACAT+AGG | - | chr4_2:57808526-57808545 | None:intergenic | 25.0% |
| !! | AAAAGAATTGGCATAACTTT+TGG | - | chr4_2:57808675-57808694 | None:intergenic | 25.0% |
| ! | ATGGTAATTAATTCATCTGA+GGG | - | chr4_2:57808711-57808730 | None:intergenic | 25.0% |
| !!! | AAACTTTAGAACTTCAAAGA+CGG | + | chr4_2:57808813-57808832 | Msa0610120:intron | 25.0% |
| ! | ATTAAGAGCTTAGTAATCAT+TGG | - | chr4_2:57809034-57809053 | None:intergenic | 25.0% |
| ! | TTACTAAGCTCTTAATCTTA+TGG | + | chr4_2:57809038-57809057 | Msa0610120:intron | 25.0% |
| !! | ATGCATGATCATCAATTTTA+AGG | + | chr4_2:57809085-57809104 | Msa0610120:intron | 25.0% |
| !!! | ATGATCATCAATTTTAAGGA+TGG | + | chr4_2:57809089-57809108 | Msa0610120:intron | 25.0% |
| ! | CTTAAAACTTGATTGGAAAA+TGG | - | chr4_2:57809154-57809173 | None:intergenic | 25.0% |
| !! | CATTTTCCAATCAAGTTTTA+AGG | + | chr4_2:57809152-57809171 | Msa0610120:intron | 25.0% |
| ! | TCAATTCCTTAAAACTTGAT+TGG | - | chr4_2:57809161-57809180 | None:intergenic | 25.0% |
| ! | GATGAATAATTTCCATTTGA+TGG | + | chr4_2:57809343-57809362 | Msa0610120:intron | 25.0% |
| !! | TTTTTCTATTGTAGGTTCTT+TGG | + | chr4_2:57809435-57809454 | Msa0610120:intron | 25.0% |
| ! | TAGCAAATTCAATAACTTGA+AGG | - | chr4_2:57809829-57809848 | None:intergenic | 25.0% |
| !! | GGTTATGGATATTTTATGAA+TGG | + | chr4_2:57809917-57809936 | Msa0610120:intron | 25.0% |
| !! | AGACATGGAAAGATTTTTAT+GGG | - | chr4_2:57809952-57809971 | None:intergenic | 25.0% |
| !! | TAGACATGGAAAGATTTTTA+TGG | - | chr4_2:57809953-57809972 | None:intergenic | 25.0% |
| ! | AAAAATCTTTCCATGTCTAT+TGG | + | chr4_2:57809954-57809973 | Msa0610120:intron | 25.0% |
| ! | TATTGGAATGTACAGATATA+TGG | + | chr4_2:57809971-57809990 | Msa0610120:intron | 25.0% |
| !!! | ATTTGGGAACATTTTTTACA+TGG | + | chr4_2:57810033-57810052 | Msa0610120:intron | 25.0% |
| ! | AGCAAAACAATAATGCTATT+TGG | - | chr4_2:57810158-57810177 | None:intergenic | 25.0% |
| ! | CAAAAATTGTAGAAATGACA+TGG | - | chr4_2:57810257-57810276 | None:intergenic | 25.0% |
| ! | AAAGGAAACAAGAAAAACAA+TGG | - | chr4_2:57810308-57810327 | None:intergenic | 25.0% |
| ! | CATTAAATCTTGATTGAAAG+TGG | + | chr4_2:57810472-57810491 | Msa0610120:intron | 25.0% |
| ! | AATAAAAGTCACCAAAAACA+AGG | + | chr4_2:57810753-57810772 | Msa0610120:three_prime_UTR | 25.0% |
| ! | TACAAACAAAAAGTTACCTA+TGG | - | chr4_2:57810836-57810855 | None:intergenic | 25.0% |
| ! | TATCTTCAAATTGTAGTGTT+TGG | + | chr4_2:57810864-57810883 | Msa0610120:three_prime_UTR | 25.0% |
| GAGAATGTAAGAAGAGAAAA+TGG | - | chr4_2:57807251-57807270 | None:intergenic | 30.0% | |
| TAAGCAACAACAATGAAAGA+AGG | + | chr4_2:57807277-57807296 | Msa0610120:exon | 30.0% | |
| TGAATCATTTCAGACCAATT+TGG | + | chr4_2:57807438-57807457 | Msa0610120:intron | 30.0% | |
| TTGTGGGTCTTTCATTTAAA+GGG | + | chr4_2:57807463-57807482 | Msa0610120:intron | 30.0% | |
| GATATCACATTAAGTGCATT+GGG | - | chr4_2:57807526-57807545 | None:intergenic | 30.0% | |
| TGATATCACATTAAGTGCAT+TGG | - | chr4_2:57807527-57807546 | None:intergenic | 30.0% | |
| ATAAGACCAATAACCATGAA+AGG | - | chr4_2:57807556-57807575 | None:intergenic | 30.0% | |
| !! | TTCATGGTTATTGGTCTTAT+TGG | + | chr4_2:57807556-57807575 | Msa0610120:CDS | 30.0% |
| !! | TCATGGTTATTGGTCTTATT+GGG | + | chr4_2:57807557-57807576 | Msa0610120:CDS | 30.0% |
| ! | ACTTAAGGTATTTCCATCTT+AGG | + | chr4_2:57807611-57807630 | Msa0610120:intron | 30.0% |
| CCAAACTATAATTCCTAAGA+TGG | - | chr4_2:57807627-57807646 | None:intergenic | 30.0% | |
| CCATCTTAGGAATTATAGTT+TGG | + | chr4_2:57807624-57807643 | Msa0610120:intron | 30.0% | |
| AAAATTGAGTGAATAACCGA+GGG | - | chr4_2:57808024-57808043 | None:intergenic | 30.0% | |
| AAAAATTGAGTGAATAACCG+AGG | - | chr4_2:57808025-57808044 | None:intergenic | 30.0% | |
| CTATGATAAGTAGTGTGTAT+TGG | + | chr4_2:57808426-57808445 | Msa0610120:CDS | 30.0% | |
| ! | CTAATTCTGTCTCTTTTACT+TGG | + | chr4_2:57808456-57808475 | Msa0610120:CDS | 30.0% |
| !! | TTATTTTTCTTACTCGTACC+TGG | + | chr4_2:57808484-57808503 | Msa0610120:intron | 30.0% |
| TGGTAATTAATTCATCTGAG+GGG | - | chr4_2:57808710-57808729 | None:intergenic | 30.0% | |
| GATGGTAATTAATTCATCTG+AGG | - | chr4_2:57808712-57808731 | None:intergenic | 30.0% | |
| TGAATTAATTACCATCATCG+TGG | + | chr4_2:57808716-57808735 | Msa0610120:intron | 30.0% | |
| ! | CTAAAGTTTGTTTAACTCTC+CGG | - | chr4_2:57808802-57808821 | None:intergenic | 30.0% |
| ATGCATAGTAACTTCCAATA+AGG | - | chr4_2:57809071-57809090 | None:intergenic | 30.0% | |
| ATAAAAAGGGTGATGTTCAA+AGG | + | chr4_2:57809263-57809282 | Msa0610120:intron | 30.0% | |
| TAAAAAGGGTGATGTTCAAA+GGG | + | chr4_2:57809264-57809283 | Msa0610120:intron | 30.0% | |
| !! | TAGCTTAAAAGCATCTCAAA+TGG | - | chr4_2:57809296-57809315 | None:intergenic | 30.0% |
| AATGGAAATTATTCATCCGA+GGG | - | chr4_2:57809340-57809359 | None:intergenic | 30.0% | |
| AAATGGAAATTATTCATCCG+AGG | - | chr4_2:57809341-57809360 | None:intergenic | 30.0% | |
| TACAATAGAAAAAAGCTGAG+TGG | - | chr4_2:57809428-57809447 | None:intergenic | 30.0% | |
| !!! | ACTCAGCTTTTTTCTATTGT+AGG | + | chr4_2:57809427-57809446 | Msa0610120:intron | 30.0% |
| GTTTCAAATTAAATCTTCGC+AGG | + | chr4_2:57809633-57809652 | Msa0610120:intron | 30.0% | |
| CACTGCATAAATCAATCTAT+CGG | - | chr4_2:57809691-57809710 | None:intergenic | 30.0% | |
| AGCATTATTGTTAAGATGAG+AGG | - | chr4_2:57809768-57809787 | None:intergenic | 30.0% | |
| TAACAATAATGCTTGCAAAG+AGG | + | chr4_2:57809775-57809794 | Msa0610120:CDS | 30.0% | |
| AAAGCTAATGCTTAATGTGT+TGG | - | chr4_2:57809895-57809914 | None:intergenic | 30.0% | |
| ! | GGAAAGATTTTTATGGGAAA+AGG | - | chr4_2:57809946-57809965 | None:intergenic | 30.0% |
| ! | AATTTTTACAAGTACCTCCA+AGG | - | chr4_2:57810215-57810234 | None:intergenic | 30.0% |
| ! | GTCATTTCTACAATTTTTGC+TGG | + | chr4_2:57810258-57810277 | Msa0610120:intron | 30.0% |
| AAAATTCCCCTTTCAAAAAG+AGG | - | chr4_2:57810452-57810471 | None:intergenic | 30.0% | |
| TTGATTGAAAGTGGTTGATT+TGG | + | chr4_2:57810481-57810500 | Msa0610120:intron | 30.0% | |
| !!! | CTAATTAAGCACCTTGTTTT+TGG | - | chr4_2:57810767-57810786 | None:intergenic | 30.0% |
| ! | AAGGTGCTTAATTAGTCATA+GGG | + | chr4_2:57810772-57810791 | Msa0610120:three_prime_UTR | 30.0% |
| TCATAGAACACTAACTGAAT+GGG | - | chr4_2:57810933-57810952 | None:intergenic | 30.0% | |
| ATCATAGAACACTAACTGAA+TGG | - | chr4_2:57810934-57810953 | None:intergenic | 30.0% | |
| TTAGTGTTCTATGATCTGTA+AGG | + | chr4_2:57810939-57810958 | Msa0610120:three_prime_UTR | 30.0% | |
| CTTGTGGGTCTTTCATTTAA+AGG | + | chr4_2:57807462-57807481 | Msa0610120:intron | 35.0% | |
| !! | GCTGTTTTCTTAAGCTATCT+TGG | + | chr4_2:57807802-57807821 | Msa0610120:intron | 35.0% |
| TTTCTTAAGCTATCTTGGAG+AGG | + | chr4_2:57807807-57807826 | Msa0610120:intron | 35.0% | |
| CTGTTTGGAAGACAATTTGT+GGG | - | chr4_2:57807948-57807967 | None:intergenic | 35.0% | |
| ACTGTTTGGAAGACAATTTG+TGG | - | chr4_2:57807949-57807968 | None:intergenic | 35.0% | |
| AAATTGAGTGAATAACCGAG+GGG | - | chr4_2:57808023-57808042 | None:intergenic | 35.0% | |
| CAAACAAGGCCATTATCATT+TGG | - | chr4_2:57808192-57808211 | None:intergenic | 35.0% | |
| TGGCAATTCTCATCATTGAA+AGG | + | chr4_2:57808354-57808373 | Msa0610120:CDS | 35.0% | |
| GGCAATTCTCATCATTGAAA+GGG | + | chr4_2:57808355-57808374 | Msa0610120:CDS | 35.0% | |
| ATCATAGCAGCCATTATTAG+AGG | - | chr4_2:57808413-57808432 | None:intergenic | 35.0% | |
| TGATAAGTAGTGTGTATTGG+AGG | + | chr4_2:57808429-57808448 | Msa0610120:CDS | 35.0% | |
| ! | TTTGCTACTTCTGTCAACAT+AGG | + | chr4_2:57808587-57808606 | Msa0610120:intron | 35.0% |
| TAATTACCATCATCGTGGAT+TGG | + | chr4_2:57808721-57808740 | Msa0610120:intron | 35.0% | |
| !!! | ACAGCCTTAATGCTTTTTTC+CGG | + | chr4_2:57808780-57808799 | Msa0610120:intron | 35.0% |
| GATGATTTACTTCACAGACA+AGG | - | chr4_2:57808839-57808858 | None:intergenic | 35.0% | |
| GAAGTAAATCATCACACCTA+TGG | + | chr4_2:57808846-57808865 | Msa0610120:intron | 35.0% | |
| TAAATCATCACACCTATGGT+AGG | + | chr4_2:57808850-57808869 | Msa0610120:intron | 35.0% | |
| ! | AACAACTCCTAGCATTTTCA+GGG | - | chr4_2:57808990-57809009 | None:intergenic | 35.0% |
| ! | TAACAACTCCTAGCATTTTC+AGG | - | chr4_2:57808991-57809010 | None:intergenic | 35.0% |
| TGAAAATGCTAGGAGTTGTT+AGG | + | chr4_2:57808990-57809009 | Msa0610120:intron | 35.0% | |
| GAAAATGCTAGGAGTTGTTA+GGG | + | chr4_2:57808991-57809010 | Msa0610120:intron | 35.0% | |
| AAAATGCTAGGAGTTGTTAG+GGG | + | chr4_2:57808992-57809011 | Msa0610120:intron | 35.0% | |
| TAGTAACTTCCAATAAGGAG+TGG | - | chr4_2:57809066-57809085 | None:intergenic | 35.0% | |
| GCAATTGTTCCTCACATATA+AGG | - | chr4_2:57809117-57809136 | None:intergenic | 35.0% | |
| ! | TAAGCAGCTTTTTACTCCAA+TGG | - | chr4_2:57809232-57809251 | None:intergenic | 35.0% |
| ATGGAAATTATTCATCCGAG+GGG | - | chr4_2:57809339-57809358 | None:intergenic | 35.0% | |
| CATGATGCTTAATTGCTTCA+TGG | - | chr4_2:57809375-57809394 | None:intergenic | 35.0% | |
| GAAAAAAGCTGAGTGGAAAA+AGG | - | chr4_2:57809421-57809440 | None:intergenic | 35.0% | |
| TACGTTGAATGTGTGTACAT+TGG | - | chr4_2:57809534-57809553 | None:intergenic | 35.0% | |
| TGTACACACATTCAACGTAT+TGG | + | chr4_2:57809535-57809554 | Msa0610120:CDS | 35.0% | |
| !! | ACATTCAACGTATTGGCTAT+GGG | + | chr4_2:57809542-57809561 | Msa0610120:CDS | 35.0% |
| ! | ATTATGTGTTGGTAAGAGTG+TGG | + | chr4_2:57809863-57809882 | Msa0610120:intron | 35.0% |
| !! | CACATTAAGCATTAGCTTTC+AGG | + | chr4_2:57809896-57809915 | Msa0610120:intron | 35.0% |
| !! | AAGCATTAGCTTTCAGGTTA+TGG | + | chr4_2:57809902-57809921 | Msa0610120:intron | 35.0% |
| TCTGTACATTCCAATAGACA+TGG | - | chr4_2:57809967-57809986 | None:intergenic | 35.0% | |
| TGGAATGTACAGATATATGG+AGG | + | chr4_2:57809974-57809993 | Msa0610120:intron | 35.0% | |
| !! | GTGAAATCTTGACTTGGTAA+AGG | - | chr4_2:57810326-57810345 | None:intergenic | 35.0% |
| ! | AAAGGTGTGAAATCTTGACT+TGG | - | chr4_2:57810332-57810351 | None:intergenic | 35.0% |
| AAGTCAAGATTTCACACCTT+TGG | + | chr4_2:57810331-57810350 | Msa0610120:intron | 35.0% | |
| !! | CAACACACCTCTTTTTGAAA+GGG | + | chr4_2:57810442-57810461 | Msa0610120:intron | 35.0% |
| !! | AACACACCTCTTTTTGAAAG+GGG | + | chr4_2:57810443-57810462 | Msa0610120:intron | 35.0% |
| !! | ATACTGCATTTGCTGTACTA+AGG | + | chr4_2:57810533-57810552 | Msa0610120:CDS | 35.0% |
| !! | TACTGCATTTGCTGTACTAA+GGG | + | chr4_2:57810534-57810553 | Msa0610120:CDS | 35.0% |
| TGTTGTACTGCAAAAGAACA+AGG | + | chr4_2:57810728-57810747 | Msa0610120:three_prime_UTR | 35.0% | |
| ! | CAAGGTGCTTAATTAGTCAT+AGG | + | chr4_2:57810771-57810790 | Msa0610120:three_prime_UTR | 35.0% |
| GTCACTGTATCACAATTGAT+AGG | - | chr4_2:57810808-57810827 | None:intergenic | 35.0% | |
| GTGAAGAGATATATCAAGAG+TGG | + | chr4_2:57810899-57810918 | Msa0610120:three_prime_UTR | 35.0% | |
| GAGATATATCAAGAGTGGAA+TGG | + | chr4_2:57810904-57810923 | Msa0610120:three_prime_UTR | 35.0% | |
| AAGAAAAAGACAAACTCGCG+CGG | + | chr4_2:57807116-57807135 | Msa0610120:five_prime_UTR | 40.0% | |
| AGAAGAGAAAATGGGTCACT+GGG | - | chr4_2:57807242-57807261 | None:intergenic | 40.0% | |
| AAGAAGAGAAAATGGGTCAC+TGG | - | chr4_2:57807243-57807262 | None:intergenic | 40.0% | |
| GCTGATAAGCGTGAATTCTT+TGG | + | chr4_2:57807394-57807413 | Msa0610120:CDS | 40.0% | |
| !! | TTCAGACCAATTTGGTCTTG+TGG | + | chr4_2:57807446-57807465 | Msa0610120:intron | 40.0% |
| !! | TCAGACCAATTTGGTCTTGT+GGG | + | chr4_2:57807447-57807466 | Msa0610120:intron | 40.0% |
| AAAGACCCACAAGACCAAAT+TGG | - | chr4_2:57807455-57807474 | None:intergenic | 40.0% | |
| ATCACTTAGGCTTAATCACC+AGG | + | chr4_2:57807651-57807670 | Msa0610120:intron | 40.0% | |
| TCACTTAGGCTTAATCACCA+GGG | + | chr4_2:57807652-57807671 | Msa0610120:intron | 40.0% | |
| TTAATCACCAGGGTTCTGTT+TGG | + | chr4_2:57807662-57807681 | Msa0610120:intron | 40.0% | |
| TGTTTATCCAAACAGAACCC+TGG | - | chr4_2:57807672-57807691 | None:intergenic | 40.0% | |
| TAAGCACTTGTGAGACTGTT+TGG | - | chr4_2:57807963-57807982 | None:intergenic | 40.0% | |
| ATTTATGGCCAAAGTTCCCA+AGG | + | chr4_2:57808090-57808109 | Msa0610120:intron | 40.0% | |
| !! | GGGTTGGACATGTTTTTATG+TGG | + | chr4_2:57808122-57808141 | Msa0610120:CDS | 40.0% |
| ! | CTGTGACTTCAGTAGGTTTT+GGG | + | chr4_2:57808145-57808164 | Msa0610120:CDS | 40.0% |
| GGGTCTGCATATTATCATCT+CGG | + | chr4_2:57808165-57808184 | Msa0610120:CDS | 40.0% | |
| GGTCTGCATATTATCATCTC+GGG | + | chr4_2:57808166-57808185 | Msa0610120:CDS | 40.0% | |
| TCTTCCAAGAAAGAACTCAC+CGG | - | chr4_2:57808225-57808244 | None:intergenic | 40.0% | |
| !! | TGAAAGGGTTGATGCAAAGA+AGG | + | chr4_2:57808370-57808389 | Msa0610120:CDS | 40.0% |
| !! | GAAAGGGTTGATGCAAAGAA+GGG | + | chr4_2:57808371-57808390 | Msa0610120:CDS | 40.0% |
| ! | TTGAGATGGTGTCAAGGATT+AGG | + | chr4_2:57808744-57808763 | Msa0610120:intron | 40.0% |
| !! | CTCTCCGGAAAAAAGCATTA+AGG | - | chr4_2:57808787-57808806 | None:intergenic | 40.0% |
| ! | AGTGGGGAATTTTCTGCAAT+AGG | + | chr4_2:57808877-57808896 | Msa0610120:intron | 40.0% |
| ! | GTGGGGAATTTTCTGCAATA+GGG | + | chr4_2:57808878-57808897 | Msa0610120:intron | 40.0% |
| !! | AATAGGGACACACTGCTTTT+AGG | + | chr4_2:57808894-57808913 | Msa0610120:intron | 40.0% |
| ! | ACAACTCCTAGCATTTTCAG+GGG | - | chr4_2:57808989-57809008 | None:intergenic | 40.0% |
| AAATGCTAGGAGTTGTTAGG+GGG | + | chr4_2:57808993-57809012 | Msa0610120:intron | 40.0% | |
| CTTATGGAACCACTCCTTAT+TGG | + | chr4_2:57809054-57809073 | Msa0610120:intron | 40.0% | |
| AGGATGGTTCCTTATATGTG+AGG | + | chr4_2:57809105-57809124 | Msa0610120:intron | 40.0% | |
| CACTTACAGTCTTACACCAT+TGG | + | chr4_2:57809213-57809232 | Msa0610120:intron | 40.0% | |
| TTTGAATCTCGTATTCCCCT+CGG | + | chr4_2:57809321-57809340 | Msa0610120:intron | 40.0% | |
| TCATGGCTACTTCCATCAAA+TGG | - | chr4_2:57809358-57809377 | None:intergenic | 40.0% | |
| TTTGGACCAGAAGATATGGA+CGG | - | chr4_2:57809467-57809486 | None:intergenic | 40.0% | |
| ACAGTTTGGACCAGAAGATA+TGG | - | chr4_2:57809471-57809490 | None:intergenic | 40.0% | |
| CAGCAATGCATGATACAGTT+TGG | - | chr4_2:57809485-57809504 | None:intergenic | 40.0% | |
| GTTGAATGTGTGTACATTGG+AGG | - | chr4_2:57809531-57809550 | None:intergenic | 40.0% | |
| !! | CACATTCAACGTATTGGCTA+TGG | + | chr4_2:57809541-57809560 | Msa0610120:CDS | 40.0% |
| ! | GCAGGTTTGTACTTTTGGTA+TGG | + | chr4_2:57809567-57809586 | Msa0610120:intron | 40.0% |
| TCTCTTGCATCATAGCTAGA+GGG | - | chr4_2:57809665-57809684 | None:intergenic | 40.0% | |
| ! | GTGACTTTTCATACTGTCAG+TGG | + | chr4_2:57809708-57809727 | Msa0610120:CDS | 40.0% |
| ! | ACACTGAAGCATTTATCTGC+TGG | + | chr4_2:57809735-57809754 | Msa0610120:CDS | 40.0% |
| ! | GAAGCATTTATCTGCTGGAA+TGG | + | chr4_2:57809740-57809759 | Msa0610120:CDS | 40.0% |
| CAATAATGCTTGCAAAGAGG+AGG | + | chr4_2:57809778-57809797 | Msa0610120:CDS | 40.0% | |
| ! | TGTTGGTAAGAGTGTGGATA+TGG | + | chr4_2:57809869-57809888 | Msa0610120:intron | 40.0% |
| !!! | CTTGTTTTTGAGCACTTCCT+TGG | + | chr4_2:57810195-57810214 | Msa0610120:intron | 40.0% |
| GACATGGAACTCAGGAATAT+TGG | - | chr4_2:57810241-57810260 | None:intergenic | 40.0% | |
| GTAGAAATGACATGGAACTC+AGG | - | chr4_2:57810249-57810268 | None:intergenic | 40.0% | |
| GTAGTTCTTTCTGCTGTTGT+TGG | + | chr4_2:57810412-57810431 | Msa0610120:intron | 40.0% | |
| ! | TTCAAAAAGAGGTGTGTTGG+TGG | - | chr4_2:57810441-57810460 | None:intergenic | 40.0% |
| ! | CCTTTCAAAAAGAGGTGTGT+TGG | - | chr4_2:57810444-57810463 | None:intergenic | 40.0% |
| ! | CCAACACACCTCTTTTTGAA+AGG | + | chr4_2:57810441-57810460 | Msa0610120:intron | 40.0% |
| !! | GGTTGATTTGGTCTATATGC+AGG | + | chr4_2:57810493-57810512 | Msa0610120:intron | 40.0% |
| TGATCTCAATGTGCAGCTAT+AGG | + | chr4_2:57810570-57810589 | Msa0610120:CDS | 40.0% | |
| GATACAGTGACATTCACCAT+AGG | + | chr4_2:57810817-57810836 | Msa0610120:three_prime_UTR | 40.0% | |
| TTATCTTGTCCGATCCCTGA+TGG | + | chr4_2:57807140-57807159 | Msa0610120:five_prime_UTR | 45.0% | |
| ATGTAGCATGAATGCCGTGA+CGG | - | chr4_2:57807196-57807215 | None:intergenic | 45.0% | |
| TCACTGGGGAAAAGTAGCAA+CGG | - | chr4_2:57807227-57807246 | None:intergenic | 45.0% | |
| GAAGAGAAAATGGGTCACTG+GGG | - | chr4_2:57807241-57807260 | None:intergenic | 45.0% | |
| ! | TCTGAGGTTGAGGAATGGAT+GGG | - | chr4_2:57807360-57807379 | None:intergenic | 45.0% |
| ! | ATCTGAGGTTGAGGAATGGA+TGG | - | chr4_2:57807361-57807380 | None:intergenic | 45.0% |
| ! | GTACATCTGAGGTTGAGGAA+TGG | - | chr4_2:57807365-57807384 | None:intergenic | 45.0% |
| ! | TCATGGTACATCTGAGGTTG+AGG | - | chr4_2:57807370-57807389 | None:intergenic | 45.0% |
| GCGAAATCATGGTACATCTG+AGG | - | chr4_2:57807376-57807395 | None:intergenic | 45.0% | |
| CACGCTTATCAGCGAAATCA+TGG | - | chr4_2:57807387-57807406 | None:intergenic | 45.0% | |
| ATAGCTCACCTTGGGAACTT+TGG | - | chr4_2:57808101-57808120 | None:intergenic | 45.0% | |
| AAAGTTCCCAAGGTGAGCTA+TGG | + | chr4_2:57808100-57808119 | Msa0610120:intron | 45.0% | |
| AAGTTCCCAAGGTGAGCTAT+GGG | + | chr4_2:57808101-57808120 | Msa0610120:intron | 45.0% | |
| TATGTGGCTGTGACTTCAGT+AGG | + | chr4_2:57808138-57808157 | Msa0610120:CDS | 45.0% | |
| ! | GCTGTGACTTCAGTAGGTTT+TGG | + | chr4_2:57808144-57808163 | Msa0610120:CDS | 45.0% |
| CATCTCGGGCCAAATGATAA+TGG | + | chr4_2:57808180-57808199 | Msa0610120:CDS | 45.0% | |
| !! | ATAATGGCCTTGTTTGCGAC+AGG | + | chr4_2:57808196-57808215 | Msa0610120:CDS | 45.0% |
| !!! | GACTGTTGCTTTTGCTTCAC+TGG | + | chr4_2:57808331-57808350 | Msa0610120:CDS | 45.0% |
| !!! | TGTTGCTTTTGCTTCACTGG+TGG | + | chr4_2:57808334-57808353 | Msa0610120:CDS | 45.0% |
| TCTCAACCAATCCACGATGA+TGG | - | chr4_2:57808730-57808749 | None:intergenic | 45.0% | |
| !! | TCATCGTGGATTGGTTGAGA+TGG | + | chr4_2:57808730-57808749 | Msa0610120:intron | 45.0% |
| ! | GATTGGTTGAGATGGTGTCA+AGG | + | chr4_2:57808738-57808757 | Msa0610120:intron | 45.0% |
| AATGCTAGGAGTTGTTAGGG+GGG | + | chr4_2:57808994-57809013 | Msa0610120:intron | 45.0% | |
| TGACATCCGTCCATATCTTC+TGG | + | chr4_2:57809458-57809477 | Msa0610120:CDS | 45.0% | |
| ATGCATTGCTGTACCTCTCA+TGG | + | chr4_2:57809494-57809513 | Msa0610120:CDS | 45.0% | |
| GGCAACAAAAATGCCATGAG+AGG | - | chr4_2:57809510-57809529 | None:intergenic | 45.0% | |
| GTCTCTTGCATCATAGCTAG+AGG | - | chr4_2:57809666-57809685 | None:intergenic | 45.0% | |
| !! | GTTTTTGAGCACTTCCTTGG+AGG | + | chr4_2:57810198-57810217 | Msa0610120:intron | 45.0% |
| TGCTGTACTAAGGGCAAAGA+AGG | + | chr4_2:57810543-57810562 | Msa0610120:CDS | 45.0% | |
| ACAGAAAGGTTGCGCTACTA+AGG | + | chr4_2:57810636-57810655 | Msa0610120:three_prime_UTR | 45.0% | |
| CAGAAAGGTTGCGCTACTAA+GGG | + | chr4_2:57810637-57810656 | Msa0610120:three_prime_UTR | 45.0% | |
| GGGGAAAAGTAGCAACGGAA+GGG | - | chr4_2:57807222-57807241 | None:intergenic | 50.0% | |
| TGGGGAAAAGTAGCAACGGA+AGG | - | chr4_2:57807223-57807242 | None:intergenic | 50.0% | |
| !! | AAGAAGGCACTGCACAAGCA+TGG | + | chr4_2:57807293-57807312 | Msa0610120:CDS | 50.0% |
| !! | AGAAGGCACTGCACAAGCAT+GGG | + | chr4_2:57807294-57807313 | Msa0610120:CDS | 50.0% |
| TGCACAAGCATGGGTAGTTG+CGG | + | chr4_2:57807303-57807322 | Msa0610120:CDS | 50.0% | |
| CTGAGGTTGAGGAATGGATG+GGG | - | chr4_2:57807359-57807378 | None:intergenic | 50.0% | |
| AGTCAATCCAAACAGCCCCT+CGG | + | chr4_2:57808005-57808024 | Msa0610120:intron | 50.0% | |
| TGAATAACCGAGGGGCTGTT+TGG | - | chr4_2:57808015-57808034 | None:intergenic | 50.0% | |
| AGTTCCCAAGGTGAGCTATG+GGG | + | chr4_2:57808102-57808121 | Msa0610120:intron | 50.0% | |
| GTTGCCGGTGAGTTCTTTCT+TGG | + | chr4_2:57808218-57808237 | Msa0610120:intron | 50.0% | |
| TTTCAGGGGTGGAACAATCC+AGG | - | chr4_2:57808975-57808994 | None:intergenic | 50.0% | |
| GTTCCACCCCTGAAAATGCT+AGG | + | chr4_2:57808980-57808999 | Msa0610120:intron | 50.0% | |
| !! | ACTCCTAGCATTTTCAGGGG+TGG | - | chr4_2:57808986-57809005 | None:intergenic | 50.0% |
| ! | GGGCTGCAGGTTTGTACTTT+TGG | + | chr4_2:57809562-57809581 | Msa0610120:intron | 50.0% |
| AAGGTTGCGCTACTAAGGGT+AGG | + | chr4_2:57810641-57810660 | Msa0610120:three_prime_UTR | 50.0% | |
| ! | GCGCTACTAAGGGTAGGTTT+TGG | + | chr4_2:57810647-57810666 | Msa0610120:three_prime_UTR | 50.0% |
| TCTTGTCCGATCCCTGATGG+CGG | + | chr4_2:57807143-57807162 | Msa0610120:five_prime_UTR | 55.0% | |
| TCTTAGCCGCCATCAGGGAT+CGG | - | chr4_2:57807152-57807171 | None:intergenic | 55.0% | |
| TAGCATGAATGCCGTGACGG+TGG | - | chr4_2:57807193-57807212 | None:intergenic | 55.0% | |
| CCAACCCCATAGCTCACCTT+GGG | - | chr4_2:57808109-57808128 | None:intergenic | 55.0% | |
| TCCAACCCCATAGCTCACCT+TGG | - | chr4_2:57808110-57808129 | None:intergenic | 55.0% | |
| ! | CCTTGTTTGCGACAGGTTGC+CGG | + | chr4_2:57808203-57808222 | Msa0610120:CDS | 55.0% |
| ACACCTATGGTAGGCAGCAG+TGG | + | chr4_2:57808859-57808878 | Msa0610120:intron | 55.0% | |
| CACCTATGGTAGGCAGCAGT+GGG | + | chr4_2:57808860-57808879 | Msa0610120:intron | 55.0% | |
| ACCTATGGTAGGCAGCAGTG+GGG | + | chr4_2:57808861-57808880 | Msa0610120:intron | 55.0% | |
| ! | GAAGCAGTGCTAGAGCGTCT+CGG | + | chr4_2:57808916-57808935 | Msa0610120:intron | 55.0% |
| !! | ACGTATTGGCTATGGGCTGC+AGG | + | chr4_2:57809549-57809568 | Msa0610120:CDS | 55.0% |
| ! | TATGGGCTGAGTTGCGTGCT+TGG | + | chr4_2:57810390-57810409 | Msa0610120:intron | 55.0% |
| GACGGTCTTAGCCGCCATCA+GGG | - | chr4_2:57807157-57807176 | None:intergenic | 60.0% | |
| TGACGGTCTTAGCCGCCATC+AGG | - | chr4_2:57807158-57807177 | None:intergenic | 60.0% | |
| CATGAATGCCGTGACGGTGG+CGG | - | chr4_2:57807190-57807209 | None:intergenic | 60.0% | |
| CCCAAGGTGAGCTATGGGGT+TGG | + | chr4_2:57808106-57808125 | Msa0610120:CDS | 60.0% | |
| CCGGCAACCTGTCGCAAACA+AGG | - | chr4_2:57808206-57808225 | None:intergenic | 60.0% | |
| TCCCCACTGCTGCCTACCAT+AGG | - | chr4_2:57808865-57808884 | None:intergenic | 60.0% | |
| ! | GGTGGCGGTTGTCGGCGTGA+CGG | - | chr4_2:57807175-57807194 | None:intergenic | 70.0% |
| GCCGACAACCGCCACCGTCA+CGG | + | chr4_2:57807179-57807198 | Msa0610120:five_prime_UTR | 70.0% | |
| ! | GCCGTGACGGTGGCGGTTGT+CGG | - | chr4_2:57807183-57807202 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 57807060 | 57810987 | 57807060 | ID=Msa0610120;Name=Msa0610120 |
| chr4_2 | mRNA | 57807060 | 57810987 | 57807060 | ID=Msa0610120-mRNA-1;Parent=Msa0610120;Name=Msa0610120-mRNA-1;_AED=0.23;_eAED=0.23;_QI=229|0.66|0.71|1|1|1|7|396|311 |
| chr4_2 | exon | 57807060 | 57807415 | 57807060 | ID=Msa0610120-mRNA-1:exon:15041;Parent=Msa0610120-mRNA-1 |
| chr4_2 | exon | 57807518 | 57807617 | 57807518 | ID=Msa0610120-mRNA-1:exon:15042;Parent=Msa0610120-mRNA-1 |
| chr4_2 | exon | 57808104 | 57808224 | 57808104 | ID=Msa0610120-mRNA-1:exon:15043;Parent=Msa0610120-mRNA-1 |
| chr4_2 | exon | 57808329 | 57808498 | 57808329 | ID=Msa0610120-mRNA-1:exon:15044;Parent=Msa0610120-mRNA-1 |
| chr4_2 | exon | 57809449 | 57809570 | 57809449 | ID=Msa0610120-mRNA-1:exon:15045;Parent=Msa0610120-mRNA-1 |
| chr4_2 | exon | 57809655 | 57809873 | 57809655 | ID=Msa0610120-mRNA-1:exon:15046;Parent=Msa0610120-mRNA-1 |
| chr4_2 | exon | 57810515 | 57810987 | 57810515 | ID=Msa0610120-mRNA-1:exon:15047;Parent=Msa0610120-mRNA-1 |
| chr4_2 | five_prime_UTR | 57807060 | 57807288 | 57807060 | ID=Msa0610120-mRNA-1:five_prime_utr;Parent=Msa0610120-mRNA-1 |
| chr4_2 | CDS | 57807289 | 57807415 | 57807289 | ID=Msa0610120-mRNA-1:cds;Parent=Msa0610120-mRNA-1 |
| chr4_2 | CDS | 57807518 | 57807617 | 57807518 | ID=Msa0610120-mRNA-1:cds;Parent=Msa0610120-mRNA-1 |
| chr4_2 | CDS | 57808104 | 57808224 | 57808104 | ID=Msa0610120-mRNA-1:cds;Parent=Msa0610120-mRNA-1 |
| chr4_2 | CDS | 57808329 | 57808498 | 57808329 | ID=Msa0610120-mRNA-1:cds;Parent=Msa0610120-mRNA-1 |
| chr4_2 | CDS | 57809449 | 57809570 | 57809449 | ID=Msa0610120-mRNA-1:cds;Parent=Msa0610120-mRNA-1 |
| chr4_2 | CDS | 57809655 | 57809873 | 57809655 | ID=Msa0610120-mRNA-1:cds;Parent=Msa0610120-mRNA-1 |
| chr4_2 | CDS | 57810515 | 57810591 | 57810515 | ID=Msa0610120-mRNA-1:cds;Parent=Msa0610120-mRNA-1 |
| chr4_2 | three_prime_UTR | 57810592 | 57810987 | 57810592 | ID=Msa0610120-mRNA-1:three_prime_utr;Parent=Msa0610120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
