AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1114250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1114250 MtrunA17_Chr7g0256581 94.565 184 10 0 1 184 186 369 1.24e-123 353
Msa1114250 MtrunA17_Chr7g0256571 89.130 184 20 0 1 184 186 369 2.23e-117 337
Msa1114250 MtrunA17_Chr7g0256561 65.574 183 25 1 2 184 191 335 2.09e-74 226
Msa1114250 MtrunA17_Chr5g0443561 62.842 183 27 2 2 184 182 323 3.37e-70 215
Msa1114250 MtrunA17_Chr2g0322241 49.451 182 90 1 5 184 214 395 5.32e-55 179
Msa1114250 MtrunA17_Chr4g0025341 45.745 188 96 2 1 184 206 391 5.68e-52 171
Msa1114250 MtrunA17_Chr7g0256591 44.022 184 96 2 5 183 204 385 9.17e-51 167
Msa1114250 MtrunA17_Chr2g0329531 46.927 179 94 1 2 179 223 401 9.34e-50 165
Msa1114250 MtrunA17_Chr7g0256601 42.935 184 98 2 5 183 235 416 4.11e-48 161
Msa1114250 MtrunA17_Chr4g0062001 37.569 181 90 3 2 182 177 334 3.40e-30 112
Msa1114250 MtrunA17_Chr8g0376581 35.393 178 91 2 6 183 178 331 4.08e-30 112
Msa1114250 MtrunA17_Chr4g0062021 36.313 179 88 3 1 178 189 342 1.67e-28 108
Msa1114250 MtrunA17_Chr4g0020271 52.222 90 43 0 6 95 35 124 4.16e-28 104
Msa1114250 MtrunA17_Chr4g0062031 35.028 177 81 2 7 183 183 325 5.85e-28 106
Msa1114250 MtrunA17_Chr2g0307721 36.932 176 87 2 8 183 191 342 3.21e-27 107
Msa1114250 MtrunA17_Chr2g0307721 33.333 174 92 2 10 183 645 794 2.30e-24 99.4
Msa1114250 MtrunA17_Chr4g0061871 47.778 90 47 0 6 95 26 115 1.36e-25 95.9
Msa1114250 MtrunA17_Chr2g0300861 31.579 171 114 2 11 180 196 364 1.77e-24 98.2
Msa1114250 MtrunA17_Chr2g0300841 34.595 185 116 4 2 184 176 357 1.86e-24 97.8
Msa1114250 MtrunA17_Chr8g0370791 32.222 180 113 5 1 179 190 361 3.00e-23 94.7
Msa1114250 MtrunA17_Chr2g0300851 32.000 175 116 3 11 184 177 349 7.95e-23 93.2
Msa1114250 MtrunA17_Chr4g0062061 30.612 147 72 1 37 183 4 120 1.89e-21 84.7
Msa1114250 MtrunA17_Chr8g0370761 35.088 114 74 0 1 114 190 303 9.10e-21 88.2
Msa1114250 MtrunA17_Chr8g0370771 27.957 186 113 5 1 179 55 226 3.08e-19 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1114250 AT3G57030.1 60.753 186 71 2 1 184 189 374 1.68e-71 221
Msa1114250 AT2G41300.1 53.107 177 81 2 5 179 212 388 2.43e-57 185
Msa1114250 AT1G08470.1 49.462 186 92 1 1 184 204 389 2.38e-55 180
Msa1114250 AT5G22020.3 45.213 188 97 2 1 184 210 395 1.62e-52 172
Msa1114250 AT5G22020.1 45.213 188 97 2 1 184 210 395 1.62e-52 172
Msa1114250 AT5G22020.2 45.213 188 97 2 1 184 210 395 1.62e-52 172
Msa1114250 AT3G57010.1 47.222 180 92 3 3 179 186 365 8.30e-49 162
Msa1114250 AT3G57020.2 43.956 182 99 3 1 179 169 350 1.25e-47 159
Msa1114250 AT3G57020.1 43.956 182 99 3 1 179 183 364 1.73e-47 159
Msa1114250 AT2G41290.1 47.368 190 88 6 5 184 189 376 1.44e-44 151
Msa1114250 AT3G59530.3 41.667 180 93 2 1 179 224 392 5.28e-44 150
Msa1114250 AT3G59530.2 41.667 180 93 2 1 179 224 392 5.28e-44 150
Msa1114250 AT3G59530.1 41.667 180 93 2 1 179 224 392 5.28e-44 150
Msa1114250 AT1G74020.1 35.556 180 82 6 8 184 179 327 3.36e-23 94.4
Msa1114250 AT1G74010.1 35.000 180 83 6 8 184 177 325 2.31e-22 92.0
Msa1114250 AT1G74000.1 34.615 182 81 6 8 184 181 329 6.31e-22 90.9
Msa1114250 AT3G51440.1 44.211 95 49 2 5 98 190 281 4.13e-19 84.0
Msa1114250 AT3G51420.1 30.114 176 113 5 5 179 190 356 4.08e-17 78.2
Msa1114250 AT3G51430.2 33.813 139 78 5 5 133 190 324 5.79e-17 77.8
Msa1114250 AT3G51430.1 33.333 141 78 5 5 133 190 326 1.99e-16 76.3
Msa1114250 AT3G51450.1 33.571 140 79 4 5 133 190 326 4.28e-16 75.5

Find 71 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATTGTCTTTAGACTTATT+TGG 0.197192 7_3:-61020410 Msa1114250:three_prime_UTR
TTAACTTAGGAGAGTTAATT+AGG 0.222998 7_3:-61020379 Msa1114250:three_prime_UTR
GAAATTCAGAAGGGCAGTTT+TGG 0.258450 7_3:-61020758 Msa1114250:CDS
ATTCTGAGGCTTTGGCTTCA+TGG 0.293429 7_3:-61020843 Msa1114250:CDS
TAGCCGAAACCTCGATTTGC+AGG 0.307660 7_3:-61020866 Msa1114250:CDS
TCTTCCCTTCACAATCTTCC+AGG 0.315508 7_3:+61020565 None:intergenic
GAAGACAGCCACTTCGTAAA+AGG 0.316670 7_3:+61020711 None:intergenic
CTTCGTAAAAGGAGTTGTTT+TGG 0.345430 7_3:+61020722 None:intergenic
AGTGGCTGTCTTCTAATCTC+TGG 0.360196 7_3:-61020701 Msa1114250:CDS
TTTGCAGGATTCTGAGGCTT+TGG 0.376258 7_3:-61020851 Msa1114250:CDS
CAAGTGGTTGCAAGCGTTGT+TGG 0.382457 7_3:-61020646 Msa1114250:CDS
GAATTTCTCCTTATATTGTC+TGG 0.384336 7_3:+61020774 None:intergenic
CATATGCTTGTAACTCTTAG+TGG 0.400896 7_3:-61021008 Msa1114250:CDS
CTTTCACTTCACCAATGACT+TGG 0.405228 7_3:-61021938 Msa1114250:five_prime_UTR
AATCCTGCAAATCGAGGTTT+CGG 0.418573 7_3:+61020863 None:intergenic
TTGCTTAAAGCAACACCATT+GGG 0.429285 7_3:+61020909 None:intergenic
TTCACTGATGTCCAAGTCAT+TGG 0.437367 7_3:+61021927 None:intergenic
CCGGAGTTGGAGCATATTTG+TGG 0.445967 7_3:-61022093 Msa1114250:five_prime_UTR
GTATCGACTTGGCCAACATT+AGG 0.446245 7_3:+61020819 None:intergenic
TGGCTTCATGGACCTAATGT+TGG 0.454561 7_3:-61020831 Msa1114250:CDS
GGTGTTGCTTTAAGCAAAGA+TGG 0.456261 7_3:-61020903 Msa1114250:CDS
CTCAACGTAGTAGGACCTGC+AGG 0.457150 7_3:-61022003 Msa1114250:five_prime_UTR
GCTATAAAGCTTAGTGATGA+AGG 0.459554 7_3:-61020603 Msa1114250:CDS
GCATCCATTCGCACCGGAGT+TGG 0.459769 7_3:-61022106 Msa1114250:five_prime_UTR
CTTATATTGTCTGGAAAACC+TGG 0.462558 7_3:+61020783 None:intergenic
CCTCGATTTGCAGGATTCTG+AGG 0.468038 7_3:-61020857 Msa1114250:CDS
TATATTGCTGATGCCTACCT+TGG 0.468786 7_3:-61022027 Msa1114250:five_prime_UTR
CATATTTGTGGGAGGCCACT+AGG 0.476270 7_3:-61022081 Msa1114250:five_prime_UTR
AAGAGAAAGATGGAAAACTT+TGG 0.476666 7_3:-61020518 Msa1114250:CDS
TGCTCCAACTCCGGTGCGAA+TGG 0.479567 7_3:+61022102 None:intergenic
AGGGGAAATATTAGAAAGCC+TGG 0.482098 7_3:-61020583 Msa1114250:CDS
AAACTATAAACACCAATGTA+AGG 0.492649 7_3:+61020477 None:intergenic
CAAGTCATTGGTGAAGTGAA+AGG 0.503899 7_3:+61021939 None:intergenic
GTCCTACTACGTTGAGGCCA+AGG 0.514500 7_3:+61022010 None:intergenic
TTTGCTTAAAGCAACACCAT+TGG 0.519201 7_3:+61020908 None:intergenic
TAAATCGACAAAAGAAGTAA+AGG 0.522159 7_3:-61020955 Msa1114250:CDS
CGGAGTTGGAGCATATTTGT+GGG 0.523044 7_3:-61022092 Msa1114250:five_prime_UTR
GAAGTAAAGGTGTTATTAAG+TGG 0.524499 7_3:-61020942 Msa1114250:CDS
GTGGCTGTCTTCTAATCTCT+GGG 0.525571 7_3:-61020700 Msa1114250:CDS
ACTCTTAGTGGAGACAAGAC+TGG 0.538861 7_3:-61020996 Msa1114250:CDS
AGTGAAGTGGAAGAGAAAGA+TGG 0.540337 7_3:-61020528 Msa1114250:CDS
AGCTTTATAGCTGCAGCATG+AGG 0.546326 7_3:+61020615 None:intergenic
TTACTTTACTGATTCAAGCT+CGG 0.547514 7_3:-61021890 Msa1114250:five_prime_UTR
GAAAGATGGAAAACTTTGGA+TGG 0.549433 7_3:-61020514 Msa1114250:CDS
ATTGAAGTTCATCAGTGAAG+TGG 0.549801 7_3:-61020541 Msa1114250:CDS
CCACAAATATGCTCCAACTC+CGG 0.552196 7_3:+61022093 None:intergenic
AAGTCATTGGTGAAGTGAAA+GGG 0.553850 7_3:+61021940 None:intergenic
CAAGCTCGGTTTATCAGAGA+AGG 0.556972 7_3:-61021876 Msa1114250:intron
TTATCAAACTTTAGTCCTAG+TGG 0.560456 7_3:+61022066 None:intergenic
TACCTTGGCCTCAACGTAGT+AGG 0.560487 7_3:-61022012 Msa1114250:five_prime_UTR
CATTGGTGAAGTGAAAGGGC+TGG 0.575428 7_3:+61021944 None:intergenic
CTATAAAGCTTAGTGATGAA+GGG 0.581070 7_3:-61020602 Msa1114250:CDS
TATAAAGCTTAGTGATGAAG+GGG 0.587640 7_3:-61020601 Msa1114250:CDS
GAACAGCAAAAGTATCGACT+TGG 0.589428 7_3:+61020808 None:intergenic
TCAACGTAGTAGGACCTGCA+GGG 0.589630 7_3:-61022002 Msa1114250:five_prime_UTR
CTGTGTGCATCCATTCGCAC+CGG 0.599969 7_3:-61022112 Msa1114250:five_prime_UTR
AATATAAGGAGAAATTCAGA+AGG 0.602446 7_3:-61020768 Msa1114250:CDS
GAAAGCCTGGAAGATTGTGA+AGG 0.604737 7_3:-61020570 Msa1114250:CDS
TAAAGCTTAGAAACTTCAAG+TGG 0.607239 7_3:-61020662 Msa1114250:CDS
AGCTTCTGTTGCTAACTGAG+TGG 0.625543 7_3:+61021972 None:intergenic
CCTCAGAATCCTGCAAATCG+AGG 0.632523 7_3:+61020857 None:intergenic
TCAGTGTTAATGCCTTACAT+TGG 0.635695 7_3:-61020489 Msa1114250:CDS
TCAGTTAGCAACAGAAGCTG+AGG 0.644419 7_3:-61021968 Msa1114250:five_prime_UTR
AAAGCCTGGAAGATTGTGAA+GGG 0.647318 7_3:-61020569 Msa1114250:CDS
CTGCAGGTCCTACTACGTTG+AGG 0.648457 7_3:+61022004 None:intergenic
AGTTGGAGCATATTTGTGGG+AGG 0.655784 7_3:-61022089 Msa1114250:five_prime_UTR
CAACGTAGTAGGACCTGCAG+GGG 0.658456 7_3:-61022001 Msa1114250:five_prime_UTR
TACTACGTTGAGGCCAAGGT+AGG 0.666763 7_3:+61022014 None:intergenic
TTAGTGGAGACAAGACTGGA+CGG 0.686980 7_3:-61020992 Msa1114250:CDS
ATATAAGGAGAAATTCAGAA+GGG 0.701748 7_3:-61020767 Msa1114250:CDS
AACGTAGTAGGACCTGCAGG+GGG 0.739860 7_3:-61022000 Msa1114250:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAAAGTTTGATAAGAAAAA+TGG - chr7_3:61020452-61020471 Msa1114250:three_prime_UTR 20.0%
!! ACAGTTGATTATAGAAAAAT+AGG + chr7_3:61020680-61020699 None:intergenic 20.0%
!! AAGTTAACAAATCTTTAGTT+GGG + chr7_3:61020962-61020981 None:intergenic 20.0%
!! AAAGTTAACAAATCTTTAGT+TGG + chr7_3:61020963-61020982 None:intergenic 20.0%
!! ACAACATAAATAAAGTCATT+GGG + chr7_3:61021045-61021064 None:intergenic 20.0%
!!! AGAAATTTTGATCTATATGT+TGG - chr7_3:61021458-61021477 Msa1114250:intron 20.0%
!!! TTTGGATTAACTTTTAACTT+AGG - chr7_3:61022117-61022136 Msa1114250:five_prime_UTR 20.0%
!! CTAAAGTTTGATAAGAAAAA+TGG - chr7_3:61020452-61020471 Msa1114250:three_prime_UTR 20.0%
!! ACAGTTGATTATAGAAAAAT+AGG + chr7_3:61020680-61020699 None:intergenic 20.0%
!! AAGTTAACAAATCTTTAGTT+GGG + chr7_3:61020962-61020981 None:intergenic 20.0%
!! AAAGTTAACAAATCTTTAGT+TGG + chr7_3:61020963-61020982 None:intergenic 20.0%
!! ACAACATAAATAAAGTCATT+GGG + chr7_3:61021045-61021064 None:intergenic 20.0%
!!! AGAAATTTTGATCTATATGT+TGG - chr7_3:61021458-61021477 Msa1114250:intron 20.0%
!!! TTTGGATTAACTTTTAACTT+AGG - chr7_3:61022117-61022136 Msa1114250:five_prime_UTR 20.0%
!!! ATTTTGTTGTATGATTTGCA+AGG - chr7_3:61020369-61020388 Msa1114250:three_prime_UTR 25.0%
! TTTCGCATTTGTAACATTAA+TGG + chr7_3:61020841-61020860 None:intergenic 25.0%
!!! AATGTTGTTTTACACGAAAA+TGG - chr7_3:61020859-61020878 Msa1114250:CDS 25.0%
!!! ACAAGATTGCTTTGTTTTTA+CGG + chr7_3:61020987-61021006 None:intergenic 25.0%
! CACAACATAAATAAAGTCAT+TGG + chr7_3:61021046-61021065 None:intergenic 25.0%
! AGTGTTAACTTAAAACTAGA+GGG + chr7_3:61021163-61021182 None:intergenic 25.0%
! AAGTGTTAACTTAAAACTAG+AGG + chr7_3:61021164-61021183 None:intergenic 25.0%
! TAATCATAACAGAAATCAAC+AGG + chr7_3:61021193-61021212 None:intergenic 25.0%
! CATAATTTACCATTCCAAAA+CGG + chr7_3:61021227-61021246 None:intergenic 25.0%
! ATGGTAAATTATGTTGTATG+AGG - chr7_3:61021234-61021253 Msa1114250:intron 25.0%
! TGGTAAATTATGTTGTATGA+GGG - chr7_3:61021235-61021254 Msa1114250:intron 25.0%
! AATCAAAACTAAATGCTTGA+TGG - chr7_3:61021295-61021314 Msa1114250:intron 25.0%
! GGTTGAAGAAAATAATATCA+AGG - chr7_3:61021316-61021335 Msa1114250:intron 25.0%
! TAAATCGACAAAAGAAGTAA+AGG - chr7_3:61021554-61021573 Msa1114250:intron 25.0%
! AATATAAGGAGAAATTCAGA+AGG - chr7_3:61021741-61021760 Msa1114250:intron 25.0%
! ATATAAGGAGAAATTCAGAA+GGG - chr7_3:61021742-61021761 Msa1114250:intron 25.0%
! AAACTATAAACACCAATGTA+AGG + chr7_3:61022035-61022054 None:intergenic 25.0%
! GAATTGTCTTTAGACTTATT+TGG - chr7_3:61022099-61022118 Msa1114250:five_prime_UTR 25.0%
! TTAACTTAGGAGAGTTAATT+AGG - chr7_3:61022130-61022149 Msa1114250:five_prime_UTR 25.0%
!!! ATTTTGTTGTATGATTTGCA+AGG - chr7_3:61020369-61020388 Msa1114250:three_prime_UTR 25.0%
! TTTCGCATTTGTAACATTAA+TGG + chr7_3:61020841-61020860 None:intergenic 25.0%
!!! AATGTTGTTTTACACGAAAA+TGG - chr7_3:61020859-61020878 Msa1114250:CDS 25.0%
!!! ACAAGATTGCTTTGTTTTTA+CGG + chr7_3:61020987-61021006 None:intergenic 25.0%
! CACAACATAAATAAAGTCAT+TGG + chr7_3:61021046-61021065 None:intergenic 25.0%
! AGTGTTAACTTAAAACTAGA+GGG + chr7_3:61021163-61021182 None:intergenic 25.0%
! AAGTGTTAACTTAAAACTAG+AGG + chr7_3:61021164-61021183 None:intergenic 25.0%
! TAATCATAACAGAAATCAAC+AGG + chr7_3:61021193-61021212 None:intergenic 25.0%
! CATAATTTACCATTCCAAAA+CGG + chr7_3:61021227-61021246 None:intergenic 25.0%
! ATGGTAAATTATGTTGTATG+AGG - chr7_3:61021234-61021253 Msa1114250:intron 25.0%
! TGGTAAATTATGTTGTATGA+GGG - chr7_3:61021235-61021254 Msa1114250:intron 25.0%
! AATCAAAACTAAATGCTTGA+TGG - chr7_3:61021295-61021314 Msa1114250:intron 25.0%
! GGTTGAAGAAAATAATATCA+AGG - chr7_3:61021316-61021335 Msa1114250:intron 25.0%
! TAAATCGACAAAAGAAGTAA+AGG - chr7_3:61021554-61021573 Msa1114250:intron 25.0%
! AATATAAGGAGAAATTCAGA+AGG - chr7_3:61021741-61021760 Msa1114250:intron 25.0%
! ATATAAGGAGAAATTCAGAA+GGG - chr7_3:61021742-61021761 Msa1114250:intron 25.0%
! AAACTATAAACACCAATGTA+AGG + chr7_3:61022035-61022054 None:intergenic 25.0%
! GAATTGTCTTTAGACTTATT+TGG - chr7_3:61022099-61022118 Msa1114250:five_prime_UTR 25.0%
! TTAACTTAGGAGAGTTAATT+AGG - chr7_3:61022130-61022149 Msa1114250:five_prime_UTR 25.0%
TTATCAAACTTTAGTCCTAG+TGG + chr7_3:61020446-61020465 None:intergenic 30.0%
!! TTACTTTACTGATTCAAGCT+CGG - chr7_3:61020619-61020638 Msa1114250:CDS 30.0%
!! GAAAAATAGGTGTTGTTTAG+TGG + chr7_3:61020667-61020686 None:intergenic 30.0%
!! GTGTTGTTTCAAGATATCTT+AGG + chr7_3:61021133-61021152 None:intergenic 30.0%
TGTTAACTTAAAACTAGAGG+GGG + chr7_3:61021161-61021180 None:intergenic 30.0%
GTGTTAACTTAAAACTAGAG+GGG + chr7_3:61021162-61021181 None:intergenic 30.0%
!! TTTGATTTGACTTGAACAAG+TGG + chr7_3:61021282-61021301 None:intergenic 30.0%
! GAAAATTGTGCTATTCTCTT+AGG - chr7_3:61021338-61021357 Msa1114250:intron 30.0%
ACAGACAAATATTATCATGC+TGG + chr7_3:61021395-61021414 None:intergenic 30.0%
!! GAAGTAAAGGTGTTATTAAG+TGG - chr7_3:61021567-61021586 Msa1114250:intron 30.0%
GAATTTCTCCTTATATTGTC+TGG + chr7_3:61021738-61021757 None:intergenic 30.0%
TAAAGCTTAGAAACTTCAAG+TGG - chr7_3:61021847-61021866 Msa1114250:intron 30.0%
CTATAAAGCTTAGTGATGAA+GGG - chr7_3:61021907-61021926 Msa1114250:five_prime_UTR 30.0%
TATAAAGCTTAGTGATGAAG+GGG - chr7_3:61021908-61021927 Msa1114250:five_prime_UTR 30.0%
AAGAGAAAGATGGAAAACTT+TGG - chr7_3:61021991-61022010 Msa1114250:five_prime_UTR 30.0%
TTATCAAACTTTAGTCCTAG+TGG + chr7_3:61020446-61020465 None:intergenic 30.0%
!! TTACTTTACTGATTCAAGCT+CGG - chr7_3:61020619-61020638 Msa1114250:CDS 30.0%
!! GAAAAATAGGTGTTGTTTAG+TGG + chr7_3:61020667-61020686 None:intergenic 30.0%
!! GTGTTGTTTCAAGATATCTT+AGG + chr7_3:61021133-61021152 None:intergenic 30.0%
TGTTAACTTAAAACTAGAGG+GGG + chr7_3:61021161-61021180 None:intergenic 30.0%
GTGTTAACTTAAAACTAGAG+GGG + chr7_3:61021162-61021181 None:intergenic 30.0%
!! TTTGATTTGACTTGAACAAG+TGG + chr7_3:61021282-61021301 None:intergenic 30.0%
! GAAAATTGTGCTATTCTCTT+AGG - chr7_3:61021338-61021357 Msa1114250:intron 30.0%
ACAGACAAATATTATCATGC+TGG + chr7_3:61021395-61021414 None:intergenic 30.0%
!! GAAGTAAAGGTGTTATTAAG+TGG - chr7_3:61021567-61021586 Msa1114250:intron 30.0%
GAATTTCTCCTTATATTGTC+TGG + chr7_3:61021738-61021757 None:intergenic 30.0%
TAAAGCTTAGAAACTTCAAG+TGG - chr7_3:61021847-61021866 Msa1114250:intron 30.0%
CTATAAAGCTTAGTGATGAA+GGG - chr7_3:61021907-61021926 Msa1114250:five_prime_UTR 30.0%
TATAAAGCTTAGTGATGAAG+GGG - chr7_3:61021908-61021927 Msa1114250:five_prime_UTR 30.0%
AAGAGAAAGATGGAAAACTT+TGG - chr7_3:61021991-61022010 Msa1114250:five_prime_UTR 30.0%
AAGTCATTGGTGAAGTGAAA+GGG + chr7_3:61020572-61020591 None:intergenic 35.0%
CTTCTTCATACTCCAACATT+CGG - chr7_3:61020814-61020833 Msa1114250:CDS 35.0%
! AACATTAATGGACCGAATGT+TGG + chr7_3:61020829-61020848 None:intergenic 35.0%
! TTATCCTGATTTAGCCGTTT+TGG - chr7_3:61021210-61021229 Msa1114250:intron 35.0%
CATATGCTTGTAACTCTTAG+TGG - chr7_3:61021501-61021520 Msa1114250:intron 35.0%
CAACACCATTGGGAAAAAAA+AGG + chr7_3:61021593-61021612 None:intergenic 35.0%
TTGCTTAAAGCAACACCATT+GGG + chr7_3:61021603-61021622 None:intergenic 35.0%
TTTGCTTAAAGCAACACCAT+TGG + chr7_3:61021604-61021623 None:intergenic 35.0%
CTTATATTGTCTGGAAAACC+TGG + chr7_3:61021729-61021748 None:intergenic 35.0%
! CAGGTTTTCCAGACAATATA+AGG - chr7_3:61021727-61021746 Msa1114250:intron 35.0%
! AAATTCAGAAGGGCAGTTTT+GGG - chr7_3:61021752-61021771 Msa1114250:intron 35.0%
! CTTCGTAAAAGGAGTTGTTT+TGG + chr7_3:61021790-61021809 None:intergenic 35.0%
! AAACAACTCCTTTTACGAAG+TGG - chr7_3:61021790-61021809 Msa1114250:intron 35.0%
GCTATAAAGCTTAGTGATGA+AGG - chr7_3:61021906-61021925 Msa1114250:five_prime_UTR 35.0%
ATTGAAGTTCATCAGTGAAG+TGG - chr7_3:61021968-61021987 Msa1114250:five_prime_UTR 35.0%
GAAAGATGGAAAACTTTGGA+TGG - chr7_3:61021995-61022014 Msa1114250:five_prime_UTR 35.0%
TCAGTGTTAATGCCTTACAT+TGG - chr7_3:61022020-61022039 Msa1114250:five_prime_UTR 35.0%
AAGTCATTGGTGAAGTGAAA+GGG + chr7_3:61020572-61020591 None:intergenic 35.0%
CTTCTTCATACTCCAACATT+CGG - chr7_3:61020814-61020833 Msa1114250:CDS 35.0%
! AACATTAATGGACCGAATGT+TGG + chr7_3:61020829-61020848 None:intergenic 35.0%
! TTATCCTGATTTAGCCGTTT+TGG - chr7_3:61021210-61021229 Msa1114250:intron 35.0%
CATATGCTTGTAACTCTTAG+TGG - chr7_3:61021501-61021520 Msa1114250:intron 35.0%
CAACACCATTGGGAAAAAAA+AGG + chr7_3:61021593-61021612 None:intergenic 35.0%
TTGCTTAAAGCAACACCATT+GGG + chr7_3:61021603-61021622 None:intergenic 35.0%
TTTGCTTAAAGCAACACCAT+TGG + chr7_3:61021604-61021623 None:intergenic 35.0%
CTTATATTGTCTGGAAAACC+TGG + chr7_3:61021729-61021748 None:intergenic 35.0%
! CAGGTTTTCCAGACAATATA+AGG - chr7_3:61021727-61021746 Msa1114250:intron 35.0%
! AAATTCAGAAGGGCAGTTTT+GGG - chr7_3:61021752-61021771 Msa1114250:intron 35.0%
! CTTCGTAAAAGGAGTTGTTT+TGG + chr7_3:61021790-61021809 None:intergenic 35.0%
! AAACAACTCCTTTTACGAAG+TGG - chr7_3:61021790-61021809 Msa1114250:intron 35.0%
GCTATAAAGCTTAGTGATGA+AGG - chr7_3:61021906-61021925 Msa1114250:five_prime_UTR 35.0%
ATTGAAGTTCATCAGTGAAG+TGG - chr7_3:61021968-61021987 Msa1114250:five_prime_UTR 35.0%
GAAAGATGGAAAACTTTGGA+TGG - chr7_3:61021995-61022014 Msa1114250:five_prime_UTR 35.0%
TCAGTGTTAATGCCTTACAT+TGG - chr7_3:61022020-61022039 Msa1114250:five_prime_UTR 35.0%
TATATTGCTGATGCCTACCT+TGG - chr7_3:61020482-61020501 Msa1114250:CDS 40.0%
CAAGTCATTGGTGAAGTGAA+AGG + chr7_3:61020573-61020592 None:intergenic 40.0%
CTTTCACTTCACCAATGACT+TGG - chr7_3:61020571-61020590 Msa1114250:CDS 40.0%
TTCACTGATGTCCAAGTCAT+TGG + chr7_3:61020585-61020604 None:intergenic 40.0%
CAAAACCGACGAACATTTGT+TGG - chr7_3:61020888-61020907 Msa1114250:CDS 40.0%
TGACACAATACAAGGTGTAC+TGG + chr7_3:61020935-61020954 None:intergenic 40.0%
TGGGTGATTGACACAATACA+AGG + chr7_3:61020943-61020962 None:intergenic 40.0%
!! TGGGATTGTTGCTACTTTGA+AGG + chr7_3:61021026-61021045 None:intergenic 40.0%
CAAGATATCTTAGGTGCAGT+GGG + chr7_3:61021124-61021143 None:intergenic 40.0%
TCAAGATATCTTAGGTGCAG+TGG + chr7_3:61021125-61021144 None:intergenic 40.0%
CATTCCAAAACGGCTAAATC+AGG + chr7_3:61021217-61021236 None:intergenic 40.0%
!!! CTGATTTAGCCGTTTTGGAA+TGG - chr7_3:61021215-61021234 Msa1114250:intron 40.0%
!!! AGTGGCCTTTTTTTTCCCAA+TGG - chr7_3:61021585-61021604 Msa1114250:intron 40.0%
!! GGTGTTGCTTTAAGCAAAGA+TGG - chr7_3:61021606-61021625 Msa1114250:intron 40.0%
AATCCTGCAAATCGAGGTTT+CGG + chr7_3:61021649-61021668 None:intergenic 40.0%
!! GAACAGCAAAAGTATCGACT+TGG + chr7_3:61021704-61021723 None:intergenic 40.0%
!!! GATACTTTTGCTGTTCTTCC+AGG - chr7_3:61021708-61021727 Msa1114250:intron 40.0%
! GAAATTCAGAAGGGCAGTTT+TGG - chr7_3:61021751-61021770 Msa1114250:intron 40.0%
AGGGGAAATATTAGAAAGCC+TGG - chr7_3:61021926-61021945 Msa1114250:five_prime_UTR 40.0%
AAAGCCTGGAAGATTGTGAA+GGG - chr7_3:61021940-61021959 Msa1114250:five_prime_UTR 40.0%
AGTGAAGTGGAAGAGAAAGA+TGG - chr7_3:61021981-61022000 Msa1114250:five_prime_UTR 40.0%
TATATTGCTGATGCCTACCT+TGG - chr7_3:61020482-61020501 Msa1114250:CDS 40.0%
CAAGTCATTGGTGAAGTGAA+AGG + chr7_3:61020573-61020592 None:intergenic 40.0%
CTTTCACTTCACCAATGACT+TGG - chr7_3:61020571-61020590 Msa1114250:CDS 40.0%
TTCACTGATGTCCAAGTCAT+TGG + chr7_3:61020585-61020604 None:intergenic 40.0%
CAAAACCGACGAACATTTGT+TGG - chr7_3:61020888-61020907 Msa1114250:CDS 40.0%
TGACACAATACAAGGTGTAC+TGG + chr7_3:61020935-61020954 None:intergenic 40.0%
TGGGTGATTGACACAATACA+AGG + chr7_3:61020943-61020962 None:intergenic 40.0%
!! TGGGATTGTTGCTACTTTGA+AGG + chr7_3:61021026-61021045 None:intergenic 40.0%
CAAGATATCTTAGGTGCAGT+GGG + chr7_3:61021124-61021143 None:intergenic 40.0%
TCAAGATATCTTAGGTGCAG+TGG + chr7_3:61021125-61021144 None:intergenic 40.0%
CATTCCAAAACGGCTAAATC+AGG + chr7_3:61021217-61021236 None:intergenic 40.0%
!!! CTGATTTAGCCGTTTTGGAA+TGG - chr7_3:61021215-61021234 Msa1114250:intron 40.0%
!!! AGTGGCCTTTTTTTTCCCAA+TGG - chr7_3:61021585-61021604 Msa1114250:intron 40.0%
!! GGTGTTGCTTTAAGCAAAGA+TGG - chr7_3:61021606-61021625 Msa1114250:intron 40.0%
AATCCTGCAAATCGAGGTTT+CGG + chr7_3:61021649-61021668 None:intergenic 40.0%
!! GAACAGCAAAAGTATCGACT+TGG + chr7_3:61021704-61021723 None:intergenic 40.0%
!!! GATACTTTTGCTGTTCTTCC+AGG - chr7_3:61021708-61021727 Msa1114250:intron 40.0%
! GAAATTCAGAAGGGCAGTTT+TGG - chr7_3:61021751-61021770 Msa1114250:intron 40.0%
AGGGGAAATATTAGAAAGCC+TGG - chr7_3:61021926-61021945 Msa1114250:five_prime_UTR 40.0%
AAAGCCTGGAAGATTGTGAA+GGG - chr7_3:61021940-61021959 Msa1114250:five_prime_UTR 40.0%
AGTGAAGTGGAAGAGAAAGA+TGG - chr7_3:61021981-61022000 Msa1114250:five_prime_UTR 40.0%
CCACAAATATGCTCCAACTC+CGG + chr7_3:61020419-61020438 None:intergenic 45.0%
CGGAGTTGGAGCATATTTGT+GGG - chr7_3:61020417-61020436 Msa1114250:three_prime_UTR 45.0%
AGTTGGAGCATATTTGTGGG+AGG - chr7_3:61020420-61020439 Msa1114250:three_prime_UTR 45.0%
AGCTTCTGTTGCTAACTGAG+TGG + chr7_3:61020540-61020559 None:intergenic 45.0%
TCAGTTAGCAACAGAAGCTG+AGG - chr7_3:61020541-61020560 Msa1114250:CDS 45.0%
CAAGCTCGGTTTATCAGAGA+AGG - chr7_3:61020633-61020652 Msa1114250:CDS 45.0%
!!! TGTTGGTCACTTTTGTCTGC+AGG - chr7_3:61021475-61021494 Msa1114250:intron 45.0%
ACTCTTAGTGGAGACAAGAC+TGG - chr7_3:61021513-61021532 Msa1114250:intron 45.0%
TTAGTGGAGACAAGACTGGA+CGG - chr7_3:61021517-61021536 Msa1114250:intron 45.0%
!! TTTGCAGGATTCTGAGGCTT+TGG - chr7_3:61021658-61021677 Msa1114250:intron 45.0%
!! ATTCTGAGGCTTTGGCTTCA+TGG - chr7_3:61021666-61021685 Msa1114250:intron 45.0%
TGGCTTCATGGACCTAATGT+TGG - chr7_3:61021678-61021697 Msa1114250:intron 45.0%
!! GTATCGACTTGGCCAACATT+AGG + chr7_3:61021693-61021712 None:intergenic 45.0%
GAAGACAGCCACTTCGTAAA+AGG + chr7_3:61021801-61021820 None:intergenic 45.0%
AGTGGCTGTCTTCTAATCTC+TGG - chr7_3:61021808-61021827 Msa1114250:intron 45.0%
GTGGCTGTCTTCTAATCTCT+GGG - chr7_3:61021809-61021828 Msa1114250:intron 45.0%
! AGCTTTATAGCTGCAGCATG+AGG + chr7_3:61021897-61021916 None:intergenic 45.0%
GAAAGCCTGGAAGATTGTGA+AGG - chr7_3:61021939-61021958 Msa1114250:five_prime_UTR 45.0%
TCTTCCCTTCACAATCTTCC+AGG + chr7_3:61021947-61021966 None:intergenic 45.0%
CCACAAATATGCTCCAACTC+CGG + chr7_3:61020419-61020438 None:intergenic 45.0%
CGGAGTTGGAGCATATTTGT+GGG - chr7_3:61020417-61020436 Msa1114250:three_prime_UTR 45.0%
AGTTGGAGCATATTTGTGGG+AGG - chr7_3:61020420-61020439 Msa1114250:three_prime_UTR 45.0%
AGCTTCTGTTGCTAACTGAG+TGG + chr7_3:61020540-61020559 None:intergenic 45.0%
TCAGTTAGCAACAGAAGCTG+AGG - chr7_3:61020541-61020560 Msa1114250:CDS 45.0%
CAAGCTCGGTTTATCAGAGA+AGG - chr7_3:61020633-61020652 Msa1114250:CDS 45.0%
!!! TGTTGGTCACTTTTGTCTGC+AGG - chr7_3:61021475-61021494 Msa1114250:intron 45.0%
ACTCTTAGTGGAGACAAGAC+TGG - chr7_3:61021513-61021532 Msa1114250:intron 45.0%
TTAGTGGAGACAAGACTGGA+CGG - chr7_3:61021517-61021536 Msa1114250:intron 45.0%
!! TTTGCAGGATTCTGAGGCTT+TGG - chr7_3:61021658-61021677 Msa1114250:intron 45.0%
!! ATTCTGAGGCTTTGGCTTCA+TGG - chr7_3:61021666-61021685 Msa1114250:intron 45.0%
TGGCTTCATGGACCTAATGT+TGG - chr7_3:61021678-61021697 Msa1114250:intron 45.0%
!! GTATCGACTTGGCCAACATT+AGG + chr7_3:61021693-61021712 None:intergenic 45.0%
GAAGACAGCCACTTCGTAAA+AGG + chr7_3:61021801-61021820 None:intergenic 45.0%
AGTGGCTGTCTTCTAATCTC+TGG - chr7_3:61021808-61021827 Msa1114250:intron 45.0%
GTGGCTGTCTTCTAATCTCT+GGG - chr7_3:61021809-61021828 Msa1114250:intron 45.0%
! AGCTTTATAGCTGCAGCATG+AGG + chr7_3:61021897-61021916 None:intergenic 45.0%
GAAAGCCTGGAAGATTGTGA+AGG - chr7_3:61021939-61021958 Msa1114250:five_prime_UTR 45.0%
TCTTCCCTTCACAATCTTCC+AGG + chr7_3:61021947-61021966 None:intergenic 45.0%
CCGGAGTTGGAGCATATTTG+TGG - chr7_3:61020416-61020435 Msa1114250:three_prime_UTR 50.0%
CATATTTGTGGGAGGCCACT+AGG - chr7_3:61020428-61020447 Msa1114250:three_prime_UTR 50.0%
TACTACGTTGAGGCCAAGGT+AGG + chr7_3:61020498-61020517 None:intergenic 50.0%
TACCTTGGCCTCAACGTAGT+AGG - chr7_3:61020497-61020516 Msa1114250:CDS 50.0%
TCAACGTAGTAGGACCTGCA+GGG - chr7_3:61020507-61020526 Msa1114250:CDS 50.0%
CATTGGTGAAGTGAAAGGGC+TGG + chr7_3:61020568-61020587 None:intergenic 50.0%
! ACCGACGAACATTTGTTGGC+TGG - chr7_3:61020892-61020911 Msa1114250:CDS 50.0%
CCCAGCCAACAAATGTTCGT+CGG + chr7_3:61020896-61020915 None:intergenic 50.0%
! CCGACGAACATTTGTTGGCT+GGG - chr7_3:61020893-61020912 Msa1114250:CDS 50.0%
! TAGCCGAAACCTCGATTTGC+AGG - chr7_3:61021643-61021662 Msa1114250:intron 50.0%
CCTCAGAATCCTGCAAATCG+AGG + chr7_3:61021655-61021674 None:intergenic 50.0%
! CCTCGATTTGCAGGATTCTG+AGG - chr7_3:61021652-61021671 Msa1114250:intron 50.0%
! CAAGTGGTTGCAAGCGTTGT+TGG - chr7_3:61021863-61021882 Msa1114250:intron 50.0%
CCGGAGTTGGAGCATATTTG+TGG - chr7_3:61020416-61020435 Msa1114250:three_prime_UTR 50.0%
CATATTTGTGGGAGGCCACT+AGG - chr7_3:61020428-61020447 Msa1114250:three_prime_UTR 50.0%
TACTACGTTGAGGCCAAGGT+AGG + chr7_3:61020498-61020517 None:intergenic 50.0%
TACCTTGGCCTCAACGTAGT+AGG - chr7_3:61020497-61020516 Msa1114250:CDS 50.0%
TCAACGTAGTAGGACCTGCA+GGG - chr7_3:61020507-61020526 Msa1114250:CDS 50.0%
CATTGGTGAAGTGAAAGGGC+TGG + chr7_3:61020568-61020587 None:intergenic 50.0%
! ACCGACGAACATTTGTTGGC+TGG - chr7_3:61020892-61020911 Msa1114250:CDS 50.0%
CCCAGCCAACAAATGTTCGT+CGG + chr7_3:61020896-61020915 None:intergenic 50.0%
! CCGACGAACATTTGTTGGCT+GGG - chr7_3:61020893-61020912 Msa1114250:CDS 50.0%
! TAGCCGAAACCTCGATTTGC+AGG - chr7_3:61021643-61021662 Msa1114250:intron 50.0%
CCTCAGAATCCTGCAAATCG+AGG + chr7_3:61021655-61021674 None:intergenic 50.0%
! CCTCGATTTGCAGGATTCTG+AGG - chr7_3:61021652-61021671 Msa1114250:intron 50.0%
! CAAGTGGTTGCAAGCGTTGT+TGG - chr7_3:61021863-61021882 Msa1114250:intron 50.0%
CTGTGTGCATCCATTCGCAC+CGG - chr7_3:61020397-61020416 Msa1114250:three_prime_UTR 55.0%
GTCCTACTACGTTGAGGCCA+AGG + chr7_3:61020502-61020521 None:intergenic 55.0%
CTGCAGGTCCTACTACGTTG+AGG + chr7_3:61020508-61020527 None:intergenic 55.0%
CTCAACGTAGTAGGACCTGC+AGG - chr7_3:61020506-61020525 Msa1114250:CDS 55.0%
CAACGTAGTAGGACCTGCAG+GGG - chr7_3:61020508-61020527 Msa1114250:CDS 55.0%
AACGTAGTAGGACCTGCAGG+GGG - chr7_3:61020509-61020528 Msa1114250:CDS 55.0%
CTGTGTGCATCCATTCGCAC+CGG - chr7_3:61020397-61020416 Msa1114250:three_prime_UTR 55.0%
GTCCTACTACGTTGAGGCCA+AGG + chr7_3:61020502-61020521 None:intergenic 55.0%
CTGCAGGTCCTACTACGTTG+AGG + chr7_3:61020508-61020527 None:intergenic 55.0%
CTCAACGTAGTAGGACCTGC+AGG - chr7_3:61020506-61020525 Msa1114250:CDS 55.0%
CAACGTAGTAGGACCTGCAG+GGG - chr7_3:61020508-61020527 Msa1114250:CDS 55.0%
AACGTAGTAGGACCTGCAGG+GGG - chr7_3:61020509-61020528 Msa1114250:CDS 55.0%
GCATCCATTCGCACCGGAGT+TGG - chr7_3:61020403-61020422 Msa1114250:three_prime_UTR 60.0%
TGCTCCAACTCCGGTGCGAA+TGG + chr7_3:61020410-61020429 None:intergenic 60.0%
AGTAGGACCTGCAGGGGGTT+TGG - chr7_3:61020514-61020533 Msa1114250:CDS 60.0%
GCATCCATTCGCACCGGAGT+TGG - chr7_3:61020403-61020422 Msa1114250:three_prime_UTR 60.0%
TGCTCCAACTCCGGTGCGAA+TGG + chr7_3:61020410-61020429 None:intergenic 60.0%
AGTAGGACCTGCAGGGGGTT+TGG - chr7_3:61020514-61020533 Msa1114250:CDS 60.0%
TGAGTGGCCAAACCCCCTGC+AGG + chr7_3:61020524-61020543 None:intergenic 65.0%
TGAGTGGCCAAACCCCCTGC+AGG + chr7_3:61020524-61020543 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 61020360 61022171 61020360 ID=Msa1114250;Name=Msa1114250
chr7_3 mRNA 61020360 61022171 61020360 ID=Msa1114250-mRNA-1;Parent=Msa1114250;Name=Msa1114250-mRNA-1;_AED=0.03;_eAED=0.03;_QI=302|1|1|1|1|1|2|113|184
chr7_3 exon 61020360 61021034 61020360 ID=Msa1114250-mRNA-1:exon:13778;Parent=Msa1114250-mRNA-1
chr7_3 exon 61021877 61022171 61021877 ID=Msa1114250-mRNA-1:exon:13777;Parent=Msa1114250-mRNA-1
chr7_3 five_prime_UTR 61021877 61022171 61021877 ID=Msa1114250-mRNA-1:five_prime_utr;Parent=Msa1114250-mRNA-1
chr7_3 five_prime_UTR 61021028 61021034 61021028 ID=Msa1114250-mRNA-1:five_prime_utr;Parent=Msa1114250-mRNA-1
chr7_3 CDS 61020473 61021027 61020473 ID=Msa1114250-mRNA-1:cds;Parent=Msa1114250-mRNA-1
chr7_3 three_prime_UTR 61020360 61020472 61020360 ID=Msa1114250-mRNA-1:three_prime_utr;Parent=Msa1114250-mRNA-1
Gene Sequence

>Msa1114250

ATGCTTGTAACTCTTAGTGGAGACAAGACTGGACGGTTAATGAAATACGATAAATCGACAAAAGAAGTAAAGGTGTTATTAAGTGGCCTTTTTTTTCCCAATGGTGTTGCTTTAAGCAAAGATGGTTCATTTCTTCTAGTAGCCGAAACCTCGATTTGCAGGATTCTGAGGCTTTGGCTTCATGGACCTAATGTTGGCCAAGTCGATACTTTTGCTGTTCTTCCAGGTTTTCCAGACAATATAAGGAGAAATTCAGAAGGGCAGTTTTGGGTTGCTTTGCATTCCAAAACAACTCCTTTTACGAAGTGGCTGTCTTCTAATCTCTGGGCTCGTAAAGCATTGTTAAAGCTTAGAAACTTCAAGTGGTTGCAAGCGTTGTTGGCGACGAAGCCTCATGCTGCAGCTATAAAGCTTAGTGATGAAGGGGAAATATTAGAAAGCCTGGAAGATTGTGAAGGGAAGACATTGAAGTTCATCAGTGAAGTGGAAGAGAAAGATGGAAAACTTTGGATGGCATCAGTGTTAATGCCTTACATTGGTGTTTATAGTTTATGA

Protein sequence

>Msa1114250

MLVTLSGDKTGRLMKYDKSTKEVKVLLSGLFFPNGVALSKDGSFLLVAETSICRILRLWLHGPNVGQVDTFAVLPGFPDNIRRNSEGQFWVALHSKTTPFTKWLSSNLWARKALLKLRNFKWLQALLATKPHAAAIKLSDEGEILESLEDCEGKTLKFISEVEEKDGKLWMASVLMPYIGVYSL*