AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0264150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0264150 MtrunA17_Chr4g0072411 100.000 103 0 0 27 129 59 161 7.73e-69 204
Msa0264150 MtrunA17_Chr5g0425951 100.000 103 0 0 27 129 1 103 3.49e-68 200
Msa0264150 MtrunA17_Chr4g0030431 100.000 103 0 0 27 129 1 103 3.49e-68 200
Msa0264150 MtrunA17_Chr3g0100121 100.000 103 0 0 27 129 1 103 3.49e-68 200
Msa0264150 MtrunA17_Chr3g0113681 100.000 103 0 0 27 129 1 103 3.49e-68 200
Msa0264150 MtrunA17_Chr2g0327641 100.000 103 0 0 27 129 1 103 3.49e-68 200
Msa0264150 MtrunA17_Chr3g0103351 100.000 103 0 0 27 129 1 103 3.49e-68 200
Msa0264150 MtrunA17_Chr8g0352791 100.000 103 0 0 27 129 1 103 3.49e-68 200
Msa0264150 MtrunA17_Chr3g0103821 100.000 103 0 0 27 129 1 103 3.49e-68 200
Msa0264150 MtrunA17_Chr3g0104031 100.000 103 0 0 27 129 1 103 3.49e-68 200
Msa0264150 MtrunA17_Chr7g0225731 100.000 103 0 0 27 129 1 103 3.49e-68 200
Msa0264150 MtrunA17_Chr3g0103801 100.000 103 0 0 27 129 1 103 3.49e-68 200
Msa0264150 MtrunA17_Chr3g0103881 100.000 103 0 0 27 129 1 103 3.49e-68 200
Msa0264150 MtrunA17_Chr7g0262791 100.000 103 0 0 27 129 1 103 3.49e-68 200
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0264150 AT3G53730.1 100.000 103 0 0 27 129 1 103 4.81e-68 200
Msa0264150 AT1G07820.2 100.000 103 0 0 27 129 1 103 4.81e-68 200
Msa0264150 AT1G07820.1 100.000 103 0 0 27 129 1 103 4.81e-68 200
Msa0264150 AT5G59690.1 100.000 103 0 0 27 129 1 103 4.81e-68 200
Msa0264150 AT3G46320.1 100.000 103 0 0 27 129 1 103 4.81e-68 200
Msa0264150 AT2G28740.1 100.000 103 0 0 27 129 1 103 4.81e-68 200
Msa0264150 AT1G07660.1 100.000 103 0 0 27 129 1 103 4.81e-68 200
Msa0264150 AT3G45930.1 100.000 103 0 0 27 129 1 103 4.81e-68 200
Msa0264150 AT5G59970.1 100.000 103 0 0 27 129 1 103 4.81e-68 200
Msa0264150 AT5G59970.2 100.000 103 0 0 27 129 1 103 4.81e-68 200
Msa0264150 AT1G07660.2 83.495 103 0 1 27 129 1 86 6.72e-51 156

Find 41 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATTATTATAAGTGATTA+TGG 0.136856 2_2:-63991223 Msa0264150:three_prime_UTR
GTCTTGCTGTCAAGAGATTT+TGG 0.196951 2_2:-63991190 Msa0264150:three_prime_UTR
AGACAAGGAAGGACTCTTTA+TGG 0.217305 2_2:-63991294 Msa0264150:CDS
GGAAGGACTCTTTATGGATT+TGG 0.266178 2_2:-63991288 Msa0264150:CDS
CAAGGTTTGTGGTTGAATTT+AGG 0.286054 2_2:-63991167 Msa0264150:three_prime_UTR
GAAGGACTCTTTATGGATTT+GGG 0.322097 2_2:-63991287 Msa0264150:CDS
TGGAAAAGGTGGAAAGGGTT+TGG 0.322287 2_2:-63991559 Msa0264150:CDS
ATTATAAGTGATTATGGGTT+GGG 0.357230 2_2:-63991217 Msa0264150:three_prime_UTR
TTGTTGCGAATCAAGATGTC+TGG 0.363585 2_2:-63991585 Msa0264150:CDS
GGAAAAGGTGGAAAGGGTTT+GGG 0.363863 2_2:-63991558 Msa0264150:CDS
GAAGCCTGCGATTCGTCGTT+TGG 0.372630 2_2:-63991478 Msa0264150:CDS
TTATTATTATAAGTGATTAT+GGG 0.376021 2_2:-63991222 Msa0264150:three_prime_UTR
GGAAAGGGTTTGGGAAAGGG+AGG 0.393661 2_2:-63991549 Msa0264150:CDS
ATAGGTAGTTAACTGTTTCA+TGG 0.398750 2_2:-63991099 Msa0264150:three_prime_UTR
GGTGGAAAGGGTTTGGGAAA+GGG 0.444952 2_2:-63991552 Msa0264150:CDS
AAGATGTCTGGGCGTGGAAA+AGG 0.454402 2_2:-63991573 Msa0264150:CDS
TATTATAAGTGATTATGGGT+TGG 0.462021 2_2:-63991218 Msa0264150:three_prime_UTR
AGGTGGAAAGGGTTTGGGAA+AGG 0.475381 2_2:-63991553 Msa0264150:CDS
GTGCTTCGTGATAACATTCA+AGG 0.499787 2_2:-63991507 Msa0264150:CDS
GAGAAAGACTGTTACTGCTA+TGG 0.515154 2_2:-63991337 Msa0264150:CDS
CGTCGTTTGGCTCGTAGAGG+AGG 0.533781 2_2:-63991465 Msa0264150:CDS
TGTTGCGAATCAAGATGTCT+GGG 0.537404 2_2:-63991584 Msa0264150:CDS
TGTTATCACGAAGCACCTTA+CGG 0.542642 2_2:+63991514 None:intergenic
CGAATCAAGATGTCTGGGCG+TGG 0.544605 2_2:-63991579 Msa0264150:CDS
TTACTTACACAGAGCACGCT+AGG 0.553235 2_2:-63991359 Msa0264150:CDS
AGCATGAGATGAAACTGCGT+TGG 0.567706 2_2:-63992640 Msa0264150:CDS
ATGTCTGGGCGTGGAAAAGG+TGG 0.568080 2_2:-63991570 Msa0264150:CDS
GGTTTGTGGTTGAATTTAGG+TGG 0.570082 2_2:-63991164 Msa0264150:three_prime_UTR
AGGAGCAAAACGACACCGTA+AGG 0.575994 2_2:-63991529 Msa0264150:CDS
CGAGCCAAACGACGAATCGC+AGG 0.578319 2_2:+63991474 None:intergenic
GGAGAATGTTATTCGTGATG+CGG 0.582811 2_2:-63991382 Msa0264150:CDS
AAACTGCGTTGGTTTGATGC+CGG 0.583230 2_2:-63992629 Msa0264150:CDS
GGGCGTGGAAAAGGTGGAAA+GGG 0.585493 2_2:-63991564 Msa0264150:CDS
AAGGACTCTTTATGGATTTG+GGG 0.603730 2_2:-63991286 Msa0264150:CDS
GGAGGAGTGAAGCGTATCAG+CGG 0.620100 2_2:-63991447 Msa0264150:CDS
TGGGCGTGGAAAAGGTGGAA+AGG 0.624585 2_2:-63991565 Msa0264150:CDS
ATTCGTCGTTTGGCTCGTAG+AGG 0.627365 2_2:-63991468 Msa0264150:CDS
GTTTATGCATTGAAGAGACA+AGG 0.629886 2_2:-63991309 Msa0264150:CDS
ATGCATTGAAGAGACAAGGA+AGG 0.634793 2_2:-63991305 Msa0264150:CDS
AGGACTCTTTATGGATTTGG+GGG 0.645439 2_2:-63991285 Msa0264150:CDS
TTGATCTACGAAGAGACACG+TGG 0.703849 2_2:-63991423 Msa0264150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTGAAATATAAAATTA+TGG + chr2_2:63991484-63991503 None:intergenic 10.0%
!! TTTATTATTATAAGTGATTA+TGG - chr2_2:63992414-63992433 Msa0264150:intron 10.0%
!! TTATTATTATAAGTGATTAT+GGG - chr2_2:63992415-63992434 Msa0264150:intron 10.0%
!!! TGTTTTGAAATATAAAATTA+TGG + chr2_2:63991484-63991503 None:intergenic 10.0%
!! TTTATTATTATAAGTGATTA+TGG - chr2_2:63992414-63992433 Msa0264150:intron 10.0%
!! TTATTATTATAAGTGATTAT+GGG - chr2_2:63992415-63992434 Msa0264150:intron 10.0%
!!! AAATGCAAATTTTAATAACT+TGG + chr2_2:63991378-63991397 None:intergenic 15.0%
!!! ATATGATAATTTGATAACTT+TGG - chr2_2:63991556-63991575 Msa0264150:CDS 15.0%
!!! TTTCATTTTTGTTTTTGTTT+TGG + chr2_2:63991611-63991630 None:intergenic 15.0%
!!! AAATGCAAATTTTAATAACT+TGG + chr2_2:63991378-63991397 None:intergenic 15.0%
!!! ATATGATAATTTGATAACTT+TGG - chr2_2:63991556-63991575 Msa0264150:CDS 15.0%
!!! TTTCATTTTTGTTTTTGTTT+TGG + chr2_2:63991611-63991630 None:intergenic 15.0%
!!! GTTGATTTTATTTTTATCGA+CGG + chr2_2:63991767-63991786 None:intergenic 20.0%
!! GTCGATAAAAATAAAATCAA+CGG - chr2_2:63991766-63991785 Msa0264150:intron 20.0%
!!! TTTTTTTAGGGTAAGAATTT+AGG - chr2_2:63992498-63992517 Msa0264150:intron 20.0%
!!! ATTCAATATCATTTTGTCTA+TGG - chr2_2:63992609-63992628 Msa0264150:intron 20.0%
!!! GTTGATTTTATTTTTATCGA+CGG + chr2_2:63991767-63991786 None:intergenic 20.0%
!! GTCGATAAAAATAAAATCAA+CGG - chr2_2:63991766-63991785 Msa0264150:intron 20.0%
!!! TTTTTTTAGGGTAAGAATTT+AGG - chr2_2:63992498-63992517 Msa0264150:intron 20.0%
!!! ATTCAATATCATTTTGTCTA+TGG - chr2_2:63992609-63992628 Msa0264150:intron 20.0%
!! TATGAACATTTCATTTTCAC+CGG + chr2_2:63991030-63991049 None:intergenic 25.0%
!!! ATAGAAGCTTGAGTTATTTT+CGG - chr2_2:63991047-63991066 Msa0264150:three_prime_UTR 25.0%
!!! TTTGTGATTTTTAGTAGTTG+TGG + chr2_2:63991659-63991678 None:intergenic 25.0%
! TGAAACAAGAAAAAACACAA+GGG + chr2_2:63991837-63991856 None:intergenic 25.0%
! TTGAAACAAGAAAAAACACA+AGG + chr2_2:63991838-63991857 None:intergenic 25.0%
! ATATAGGTGATGAGATTTAA+GGG + chr2_2:63991874-63991893 None:intergenic 25.0%
! TATATAGGTGATGAGATTTA+AGG + chr2_2:63991875-63991894 None:intergenic 25.0%
! TATTATAAGTGATTATGGGT+TGG - chr2_2:63992419-63992438 Msa0264150:intron 25.0%
! ATTATAAGTGATTATGGGTT+GGG - chr2_2:63992420-63992439 Msa0264150:intron 25.0%
!!! AATTTAGGTGGTGTTTTTTT+AGG - chr2_2:63992485-63992504 Msa0264150:intron 25.0%
!!! ATTTAGGTGGTGTTTTTTTA+GGG - chr2_2:63992486-63992505 Msa0264150:intron 25.0%
!! GAGTAATTATCTTTTGTGAT+AGG - chr2_2:63992520-63992539 Msa0264150:intron 25.0%
!! TATGAACATTTCATTTTCAC+CGG + chr2_2:63991030-63991049 None:intergenic 25.0%
!!! ATAGAAGCTTGAGTTATTTT+CGG - chr2_2:63991047-63991066 Msa0264150:three_prime_UTR 25.0%
!!! TTTGTGATTTTTAGTAGTTG+TGG + chr2_2:63991659-63991678 None:intergenic 25.0%
! TGAAACAAGAAAAAACACAA+GGG + chr2_2:63991837-63991856 None:intergenic 25.0%
! TTGAAACAAGAAAAAACACA+AGG + chr2_2:63991838-63991857 None:intergenic 25.0%
! ATATAGGTGATGAGATTTAA+GGG + chr2_2:63991874-63991893 None:intergenic 25.0%
! TATATAGGTGATGAGATTTA+AGG + chr2_2:63991875-63991894 None:intergenic 25.0%
! TATTATAAGTGATTATGGGT+TGG - chr2_2:63992419-63992438 Msa0264150:intron 25.0%
! ATTATAAGTGATTATGGGTT+GGG - chr2_2:63992420-63992439 Msa0264150:intron 25.0%
!!! AATTTAGGTGGTGTTTTTTT+AGG - chr2_2:63992485-63992504 Msa0264150:intron 25.0%
!!! ATTTAGGTGGTGTTTTTTTA+GGG - chr2_2:63992486-63992505 Msa0264150:intron 25.0%
!! GAGTAATTATCTTTTGTGAT+AGG - chr2_2:63992520-63992539 Msa0264150:intron 25.0%
!! TAGAAGCTTGAGTTATTTTC+GGG - chr2_2:63991048-63991067 Msa0264150:three_prime_UTR 30.0%
ATATATGATGAAGAGAGATC+TGG - chr2_2:63991166-63991185 Msa0264150:three_prime_UTR 30.0%
TATATGATGAAGAGAGATCT+GGG - chr2_2:63991167-63991186 Msa0264150:three_prime_UTR 30.0%
! ACACTTGTCTAGTTTCATTA+GGG - chr2_2:63991232-63991251 Msa0264150:three_prime_UTR 30.0%
TAGTTTCATTAGGGACAAAA+TGG - chr2_2:63991241-63991260 Msa0264150:three_prime_UTR 30.0%
ATGCCACATGAGTAATTAAA+TGG - chr2_2:63991344-63991363 Msa0264150:CDS 30.0%
TGCCACATGAGTAATTAAAT+GGG - chr2_2:63991345-63991364 Msa0264150:CDS 30.0%
AACCCATTTAATTACTCATG+TGG + chr2_2:63991350-63991369 None:intergenic 30.0%
GTTTATAGTCCCTGTAAATA+GGG + chr2_2:63991452-63991471 None:intergenic 30.0%
TGTTTATAGTCCCTGTAAAT+AGG + chr2_2:63991453-63991472 None:intergenic 30.0%
AATGAATTAGAGATTTCACG+AGG + chr2_2:63991739-63991758 None:intergenic 30.0%
! TCTCAATTCTTCTTAGTCTT+AGG - chr2_2:63991934-63991953 Msa0264150:intron 30.0%
ATAGGTAGTTAACTGTTTCA+TGG - chr2_2:63992538-63992557 Msa0264150:intron 30.0%
! CATTTTGTCTATGGTCTATT+TGG - chr2_2:63992618-63992637 Msa0264150:CDS 30.0%
!! TAGAAGCTTGAGTTATTTTC+GGG - chr2_2:63991048-63991067 Msa0264150:three_prime_UTR 30.0%
ATATATGATGAAGAGAGATC+TGG - chr2_2:63991166-63991185 Msa0264150:three_prime_UTR 30.0%
TATATGATGAAGAGAGATCT+GGG - chr2_2:63991167-63991186 Msa0264150:three_prime_UTR 30.0%
! ACACTTGTCTAGTTTCATTA+GGG - chr2_2:63991232-63991251 Msa0264150:three_prime_UTR 30.0%
TAGTTTCATTAGGGACAAAA+TGG - chr2_2:63991241-63991260 Msa0264150:three_prime_UTR 30.0%
ATGCCACATGAGTAATTAAA+TGG - chr2_2:63991344-63991363 Msa0264150:CDS 30.0%
TGCCACATGAGTAATTAAAT+GGG - chr2_2:63991345-63991364 Msa0264150:CDS 30.0%
AACCCATTTAATTACTCATG+TGG + chr2_2:63991350-63991369 None:intergenic 30.0%
GTTTATAGTCCCTGTAAATA+GGG + chr2_2:63991452-63991471 None:intergenic 30.0%
TGTTTATAGTCCCTGTAAAT+AGG + chr2_2:63991453-63991472 None:intergenic 30.0%
AATGAATTAGAGATTTCACG+AGG + chr2_2:63991739-63991758 None:intergenic 30.0%
! TCTCAATTCTTCTTAGTCTT+AGG - chr2_2:63991934-63991953 Msa0264150:intron 30.0%
ATAGGTAGTTAACTGTTTCA+TGG - chr2_2:63992538-63992557 Msa0264150:intron 30.0%
! CATTTTGTCTATGGTCTATT+TGG - chr2_2:63992618-63992637 Msa0264150:CDS 30.0%
!!! TTATTTTCGGGTCTTATAGC+AGG - chr2_2:63991060-63991079 Msa0264150:three_prime_UTR 35.0%
! GACACTTGTCTAGTTTCATT+AGG - chr2_2:63991231-63991250 Msa0264150:three_prime_UTR 35.0%
AATCTGACTGGAAAAGAACA+TGG + chr2_2:63991294-63991313 None:intergenic 35.0%
TTGCATTTGCAGAGAAACTT+TGG - chr2_2:63991390-63991409 Msa0264150:CDS 35.0%
! ATGACGTGGATTAAACAAAG+TGG + chr2_2:63991588-63991607 None:intergenic 35.0%
!!! TGTTTTTGTTTTGGATGACG+TGG + chr2_2:63991602-63991621 None:intergenic 35.0%
!!! GTGATTTTTAGTAGTTGTGG+CGG + chr2_2:63991656-63991675 None:intergenic 35.0%
TTTCGATTTCGCGTTTGAAA+AGG + chr2_2:63991684-63991703 None:intergenic 35.0%
GGTTACGGTATGGTTTATAT+AGG + chr2_2:63991890-63991909 None:intergenic 35.0%
AGAAATGTGTGAATGAGATG+TGG + chr2_2:63991911-63991930 None:intergenic 35.0%
GTTTATGCATTGAAGAGACA+AGG - chr2_2:63992328-63992347 Msa0264150:intron 35.0%
GAAGGACTCTTTATGGATTT+GGG - chr2_2:63992350-63992369 Msa0264150:intron 35.0%
AAGGACTCTTTATGGATTTG+GGG - chr2_2:63992351-63992370 Msa0264150:intron 35.0%
CAAGGTTTGTGGTTGAATTT+AGG - chr2_2:63992470-63992489 Msa0264150:intron 35.0%
TTTCATCTCATGCTCTTTCA+TGG + chr2_2:63990991-63991010 None:intergenic 35.0%
!!! TTATTTTCGGGTCTTATAGC+AGG - chr2_2:63991060-63991079 Msa0264150:three_prime_UTR 35.0%
! GACACTTGTCTAGTTTCATT+AGG - chr2_2:63991231-63991250 Msa0264150:three_prime_UTR 35.0%
AATCTGACTGGAAAAGAACA+TGG + chr2_2:63991294-63991313 None:intergenic 35.0%
TTGCATTTGCAGAGAAACTT+TGG - chr2_2:63991390-63991409 Msa0264150:CDS 35.0%
! ATGACGTGGATTAAACAAAG+TGG + chr2_2:63991588-63991607 None:intergenic 35.0%
!!! TGTTTTTGTTTTGGATGACG+TGG + chr2_2:63991602-63991621 None:intergenic 35.0%
!!! GTGATTTTTAGTAGTTGTGG+CGG + chr2_2:63991656-63991675 None:intergenic 35.0%
TTTCGATTTCGCGTTTGAAA+AGG + chr2_2:63991684-63991703 None:intergenic 35.0%
GGTTACGGTATGGTTTATAT+AGG + chr2_2:63991890-63991909 None:intergenic 35.0%
AGAAATGTGTGAATGAGATG+TGG + chr2_2:63991911-63991930 None:intergenic 35.0%
GTTTATGCATTGAAGAGACA+AGG - chr2_2:63992328-63992347 Msa0264150:intron 35.0%
GAAGGACTCTTTATGGATTT+GGG - chr2_2:63992350-63992369 Msa0264150:intron 35.0%
AAGGACTCTTTATGGATTTG+GGG - chr2_2:63992351-63992370 Msa0264150:intron 35.0%
CAAGGTTTGTGGTTGAATTT+AGG - chr2_2:63992470-63992489 Msa0264150:intron 35.0%
AACTGATTGAAGTCGTGACA+AGG - chr2_2:63991083-63991102 Msa0264150:three_prime_UTR 40.0%
ACGAAGAAGGAGATCTTCAA+CGG + chr2_2:63991134-63991153 None:intergenic 40.0%
TCTCTTCACAAACACGAAGA+AGG + chr2_2:63991147-63991166 None:intergenic 40.0%
! ATGAAGAGAGATCTGGGTTT+TGG - chr2_2:63991173-63991192 Msa0264150:three_prime_UTR 40.0%
CATTTGCAGAGAAACTTTGG+AGG - chr2_2:63991393-63991412 Msa0264150:CDS 40.0%
TTCAACTGAGCCCTATTTAC+AGG - chr2_2:63991439-63991458 Msa0264150:CDS 40.0%
TCAACTGAGCCCTATTTACA+GGG - chr2_2:63991440-63991459 Msa0264150:CDS 40.0%
GAAACTCGCGCTATGAAAAT+TGG - chr2_2:63991627-63991646 Msa0264150:intron 40.0%
AATGAGATGTGGTTACGGTA+TGG + chr2_2:63991900-63991919 None:intergenic 40.0%
GTGTGAATGAGATGTGGTTA+CGG + chr2_2:63991905-63991924 None:intergenic 40.0%
TTGTTGCGAATCAAGATGTC+TGG - chr2_2:63992052-63992071 Msa0264150:intron 40.0%
TGTTGCGAATCAAGATGTCT+GGG - chr2_2:63992053-63992072 Msa0264150:intron 40.0%
! TGTTATCACGAAGCACCTTA+CGG + chr2_2:63992126-63992145 None:intergenic 40.0%
GTGCTTCGTGATAACATTCA+AGG - chr2_2:63992130-63992149 Msa0264150:intron 40.0%
! TGGCGTGTTGAAGATCTTTT+TGG - chr2_2:63992234-63992253 Msa0264150:intron 40.0%
GGAGAATGTTATTCGTGATG+CGG - chr2_2:63992255-63992274 Msa0264150:intron 40.0%
GAGAAAGACTGTTACTGCTA+TGG - chr2_2:63992300-63992319 Msa0264150:intron 40.0%
ATGCATTGAAGAGACAAGGA+AGG - chr2_2:63992332-63992351 Msa0264150:intron 40.0%
AGACAAGGAAGGACTCTTTA+TGG - chr2_2:63992343-63992362 Msa0264150:intron 40.0%
GGAAGGACTCTTTATGGATT+TGG - chr2_2:63992349-63992368 Msa0264150:intron 40.0%
AGGACTCTTTATGGATTTGG+GGG - chr2_2:63992352-63992371 Msa0264150:intron 40.0%
TCTTTATGGATTTGGGGGTT+AGG - chr2_2:63992357-63992376 Msa0264150:intron 40.0%
CTTTATGGATTTGGGGGTTA+GGG - chr2_2:63992358-63992377 Msa0264150:intron 40.0%
!! GTCTTGCTGTCAAGAGATTT+TGG - chr2_2:63992447-63992466 Msa0264150:intron 40.0%
!! AGAGATTTTGGCAAGGTTTG+TGG - chr2_2:63992459-63992478 Msa0264150:intron 40.0%
GGTTTGTGGTTGAATTTAGG+TGG - chr2_2:63992473-63992492 Msa0264150:intron 40.0%
AACTGATTGAAGTCGTGACA+AGG - chr2_2:63991083-63991102 Msa0264150:three_prime_UTR 40.0%
ACGAAGAAGGAGATCTTCAA+CGG + chr2_2:63991134-63991153 None:intergenic 40.0%
TCTCTTCACAAACACGAAGA+AGG + chr2_2:63991147-63991166 None:intergenic 40.0%
! ATGAAGAGAGATCTGGGTTT+TGG - chr2_2:63991173-63991192 Msa0264150:three_prime_UTR 40.0%
CATTTGCAGAGAAACTTTGG+AGG - chr2_2:63991393-63991412 Msa0264150:CDS 40.0%
TTCAACTGAGCCCTATTTAC+AGG - chr2_2:63991439-63991458 Msa0264150:CDS 40.0%
TCAACTGAGCCCTATTTACA+GGG - chr2_2:63991440-63991459 Msa0264150:CDS 40.0%
GAAACTCGCGCTATGAAAAT+TGG - chr2_2:63991627-63991646 Msa0264150:intron 40.0%
AATGAGATGTGGTTACGGTA+TGG + chr2_2:63991900-63991919 None:intergenic 40.0%
GTGTGAATGAGATGTGGTTA+CGG + chr2_2:63991905-63991924 None:intergenic 40.0%
TTGTTGCGAATCAAGATGTC+TGG - chr2_2:63992052-63992071 Msa0264150:intron 40.0%
TGTTGCGAATCAAGATGTCT+GGG - chr2_2:63992053-63992072 Msa0264150:intron 40.0%
! TGTTATCACGAAGCACCTTA+CGG + chr2_2:63992126-63992145 None:intergenic 40.0%
GTGCTTCGTGATAACATTCA+AGG - chr2_2:63992130-63992149 Msa0264150:intron 40.0%
! TGGCGTGTTGAAGATCTTTT+TGG - chr2_2:63992234-63992253 Msa0264150:intron 40.0%
GGAGAATGTTATTCGTGATG+CGG - chr2_2:63992255-63992274 Msa0264150:intron 40.0%
GAGAAAGACTGTTACTGCTA+TGG - chr2_2:63992300-63992319 Msa0264150:intron 40.0%
ATGCATTGAAGAGACAAGGA+AGG - chr2_2:63992332-63992351 Msa0264150:intron 40.0%
AGACAAGGAAGGACTCTTTA+TGG - chr2_2:63992343-63992362 Msa0264150:intron 40.0%
GGAAGGACTCTTTATGGATT+TGG - chr2_2:63992349-63992368 Msa0264150:intron 40.0%
AGGACTCTTTATGGATTTGG+GGG - chr2_2:63992352-63992371 Msa0264150:intron 40.0%
TCTTTATGGATTTGGGGGTT+AGG - chr2_2:63992357-63992376 Msa0264150:intron 40.0%
CTTTATGGATTTGGGGGTTA+GGG - chr2_2:63992358-63992377 Msa0264150:intron 40.0%
!! GTCTTGCTGTCAAGAGATTT+TGG - chr2_2:63992447-63992466 Msa0264150:intron 40.0%
!! AGAGATTTTGGCAAGGTTTG+TGG - chr2_2:63992459-63992478 Msa0264150:intron 40.0%
GGTTTGTGGTTGAATTTAGG+TGG - chr2_2:63992473-63992492 Msa0264150:intron 40.0%
AGCATGAGATGAAACTGCGT+TGG - chr2_2:63990997-63991016 Msa0264150:three_prime_UTR 45.0%
!! AAACTGCGTTGGTTTGATGC+CGG - chr2_2:63991008-63991027 Msa0264150:three_prime_UTR 45.0%
GTGACAAGGCTTCTGATTCA+TGG - chr2_2:63991097-63991116 Msa0264150:three_prime_UTR 45.0%
AGAAGGAGATCTTCAACGGA+GGG + chr2_2:63991130-63991149 None:intergenic 45.0%
AAGAAGGAGATCTTCAACGG+AGG + chr2_2:63991131-63991150 None:intergenic 45.0%
!!! ATCTGGGTTTTGGAGAGGAA+AGG - chr2_2:63991183-63991202 Msa0264150:three_prime_UTR 45.0%
GTGGCATCTGATTAGTAACG+TGG + chr2_2:63991331-63991350 None:intergenic 45.0%
GGTGATGAGATTTAAGGGTG+TGG + chr2_2:63991869-63991888 None:intergenic 45.0%
TGGAAAAGGTGGAAAGGGTT+TGG - chr2_2:63992078-63992097 Msa0264150:intron 45.0%
GGAAAAGGTGGAAAGGGTTT+GGG - chr2_2:63992079-63992098 Msa0264150:intron 45.0%
TTGATCTACGAAGAGACACG+TGG - chr2_2:63992214-63992233 Msa0264150:intron 45.0%
TTACTTACACAGAGCACGCT+AGG - chr2_2:63992278-63992297 Msa0264150:intron 45.0%
!! GCTGTCAAGAGATTTTGGCA+AGG - chr2_2:63992452-63992471 Msa0264150:intron 45.0%
AGCATGAGATGAAACTGCGT+TGG - chr2_2:63990997-63991016 Msa0264150:three_prime_UTR 45.0%
!! AAACTGCGTTGGTTTGATGC+CGG - chr2_2:63991008-63991027 Msa0264150:three_prime_UTR 45.0%
GTGACAAGGCTTCTGATTCA+TGG - chr2_2:63991097-63991116 Msa0264150:three_prime_UTR 45.0%
AGAAGGAGATCTTCAACGGA+GGG + chr2_2:63991130-63991149 None:intergenic 45.0%
AAGAAGGAGATCTTCAACGG+AGG + chr2_2:63991131-63991150 None:intergenic 45.0%
!!! ATCTGGGTTTTGGAGAGGAA+AGG - chr2_2:63991183-63991202 Msa0264150:three_prime_UTR 45.0%
GTGGCATCTGATTAGTAACG+TGG + chr2_2:63991331-63991350 None:intergenic 45.0%
GGTGATGAGATTTAAGGGTG+TGG + chr2_2:63991869-63991888 None:intergenic 45.0%
TGGAAAAGGTGGAAAGGGTT+TGG - chr2_2:63992078-63992097 Msa0264150:intron 45.0%
GGAAAAGGTGGAAAGGGTTT+GGG - chr2_2:63992079-63992098 Msa0264150:intron 45.0%
TTGATCTACGAAGAGACACG+TGG - chr2_2:63992214-63992233 Msa0264150:intron 45.0%
TTACTTACACAGAGCACGCT+AGG - chr2_2:63992278-63992297 Msa0264150:intron 45.0%
!! GCTGTCAAGAGATTTTGGCA+AGG - chr2_2:63992452-63992471 Msa0264150:intron 45.0%
!! TTAAAAATTAGAAAATTAAT+TGG + chr2_2:63991984-63992003 None:intergenic 5.0%
!! TTAAAAATTAGAAAATTAAT+TGG + chr2_2:63991984-63992003 None:intergenic 5.0%
!!! GAGAGATCTGGGTTTTGGAG+AGG - chr2_2:63991178-63991197 Msa0264150:three_prime_UTR 50.0%
TGGAGAGGAAAGGAGAAGAG+AGG - chr2_2:63991193-63991212 Msa0264150:three_prime_UTR 50.0%
GGAGAGGAAAGGAGAAGAGA+GGG - chr2_2:63991194-63991213 Msa0264150:three_prime_UTR 50.0%
CTGACGTGGCAAAATCTGAC+TGG + chr2_2:63991306-63991325 None:intergenic 50.0%
!! TTAGTAACGTGGTGCTGACG+TGG + chr2_2:63991320-63991339 None:intergenic 50.0%
!! GGATCGATGACGTGGATTAG+TGG + chr2_2:63991718-63991737 None:intergenic 50.0%
TTTCACGAGGATCGATGACG+TGG + chr2_2:63991726-63991745 None:intergenic 50.0%
ACACCTCAAACCCCATCACA+CGG - chr2_2:63991795-63991814 Msa0264150:intron 50.0%
AACGAGTCGATCCGTGTGAT+GGG + chr2_2:63991809-63991828 None:intergenic 50.0%
AAGATGTCTGGGCGTGGAAA+AGG - chr2_2:63992064-63992083 Msa0264150:intron 50.0%
AGGTGGAAAGGGTTTGGGAA+AGG - chr2_2:63992084-63992103 Msa0264150:intron 50.0%
GGTGGAAAGGGTTTGGGAAA+GGG - chr2_2:63992085-63992104 Msa0264150:intron 50.0%
AGGAGCAAAACGACACCGTA+AGG - chr2_2:63992108-63992127 Msa0264150:intron 50.0%
! ATTCGTCGTTTGGCTCGTAG+AGG - chr2_2:63992169-63992188 Msa0264150:intron 50.0%
!!! GAGAGATCTGGGTTTTGGAG+AGG - chr2_2:63991178-63991197 Msa0264150:three_prime_UTR 50.0%
TGGAGAGGAAAGGAGAAGAG+AGG - chr2_2:63991193-63991212 Msa0264150:three_prime_UTR 50.0%
GGAGAGGAAAGGAGAAGAGA+GGG - chr2_2:63991194-63991213 Msa0264150:three_prime_UTR 50.0%
CTGACGTGGCAAAATCTGAC+TGG + chr2_2:63991306-63991325 None:intergenic 50.0%
!! TTAGTAACGTGGTGCTGACG+TGG + chr2_2:63991320-63991339 None:intergenic 50.0%
!! GGATCGATGACGTGGATTAG+TGG + chr2_2:63991718-63991737 None:intergenic 50.0%
TTTCACGAGGATCGATGACG+TGG + chr2_2:63991726-63991745 None:intergenic 50.0%
ACACCTCAAACCCCATCACA+CGG - chr2_2:63991795-63991814 Msa0264150:intron 50.0%
AACGAGTCGATCCGTGTGAT+GGG + chr2_2:63991809-63991828 None:intergenic 50.0%
AAGATGTCTGGGCGTGGAAA+AGG - chr2_2:63992064-63992083 Msa0264150:intron 50.0%
AGGTGGAAAGGGTTTGGGAA+AGG - chr2_2:63992084-63992103 Msa0264150:intron 50.0%
GGTGGAAAGGGTTTGGGAAA+GGG - chr2_2:63992085-63992104 Msa0264150:intron 50.0%
AGGAGCAAAACGACACCGTA+AGG - chr2_2:63992108-63992127 Msa0264150:intron 50.0%
! ATTCGTCGTTTGGCTCGTAG+AGG - chr2_2:63992169-63992188 Msa0264150:intron 50.0%
! GATCCGTGTGATGGGGTTTG+AGG + chr2_2:63991801-63991820 None:intergenic 55.0%
ACGAGTCGATCCGTGTGATG+GGG + chr2_2:63991808-63991827 None:intergenic 55.0%
GAACGAGTCGATCCGTGTGA+TGG + chr2_2:63991810-63991829 None:intergenic 55.0%
CGAATCAAGATGTCTGGGCG+TGG - chr2_2:63992058-63992077 Msa0264150:intron 55.0%
ATGTCTGGGCGTGGAAAAGG+TGG - chr2_2:63992067-63992086 Msa0264150:intron 55.0%
TGGGCGTGGAAAAGGTGGAA+AGG - chr2_2:63992072-63992091 Msa0264150:intron 55.0%
GGGCGTGGAAAAGGTGGAAA+GGG - chr2_2:63992073-63992092 Msa0264150:intron 55.0%
GGAAAGGGTTTGGGAAAGGG+AGG - chr2_2:63992088-63992107 Msa0264150:intron 55.0%
GAAGCCTGCGATTCGTCGTT+TGG - chr2_2:63992159-63992178 Msa0264150:intron 55.0%
GGAGGAGTGAAGCGTATCAG+CGG - chr2_2:63992190-63992209 Msa0264150:intron 55.0%
! GATCCGTGTGATGGGGTTTG+AGG + chr2_2:63991801-63991820 None:intergenic 55.0%
ACGAGTCGATCCGTGTGATG+GGG + chr2_2:63991808-63991827 None:intergenic 55.0%
GAACGAGTCGATCCGTGTGA+TGG + chr2_2:63991810-63991829 None:intergenic 55.0%
CGAATCAAGATGTCTGGGCG+TGG - chr2_2:63992058-63992077 Msa0264150:intron 55.0%
ATGTCTGGGCGTGGAAAAGG+TGG - chr2_2:63992067-63992086 Msa0264150:intron 55.0%
TGGGCGTGGAAAAGGTGGAA+AGG - chr2_2:63992072-63992091 Msa0264150:intron 55.0%
GGGCGTGGAAAAGGTGGAAA+GGG - chr2_2:63992073-63992092 Msa0264150:intron 55.0%
GGAAAGGGTTTGGGAAAGGG+AGG - chr2_2:63992088-63992107 Msa0264150:intron 55.0%
GAAGCCTGCGATTCGTCGTT+TGG - chr2_2:63992159-63992178 Msa0264150:intron 55.0%
GGAGGAGTGAAGCGTATCAG+CGG - chr2_2:63992190-63992209 Msa0264150:intron 55.0%
CGAGCCAAACGACGAATCGC+AGG + chr2_2:63992166-63992185 None:intergenic 60.0%
! CGTCGTTTGGCTCGTAGAGG+AGG - chr2_2:63992172-63992191 Msa0264150:intron 60.0%
CGAGCCAAACGACGAATCGC+AGG + chr2_2:63992166-63992185 None:intergenic 60.0%
! CGTCGTTTGGCTCGTAGAGG+AGG - chr2_2:63992172-63992191 Msa0264150:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 63990990 63992669 63990990 ID=Msa0264150;Name=Msa0264150
chr2_2 mRNA 63990990 63992669 63990990 ID=Msa0264150-mRNA-1;Parent=Msa0264150;Name=Msa0264150-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.5|0.33|0.66|0|0.33|3|291|129
chr2_2 exon 63990990 63991611 63990990 ID=Msa0264150-mRNA-1:exon:19933;Parent=Msa0264150-mRNA-1
chr2_2 exon 63991704 63991709 63991704 ID=Msa0264150-mRNA-1:exon:19932;Parent=Msa0264150-mRNA-1
chr2_2 exon 63992617 63992669 63992617 ID=Msa0264150-mRNA-1:exon:19931;Parent=Msa0264150-mRNA-1
chr2_2 CDS 63992617 63992669 63992617 ID=Msa0264150-mRNA-1:cds;Parent=Msa0264150-mRNA-1
chr2_2 CDS 63991704 63991709 63991704 ID=Msa0264150-mRNA-1:cds;Parent=Msa0264150-mRNA-1
chr2_2 CDS 63991281 63991611 63991281 ID=Msa0264150-mRNA-1:cds;Parent=Msa0264150-mRNA-1
chr2_2 three_prime_UTR 63990990 63991280 63990990 ID=Msa0264150-mRNA-1:three_prime_utr;Parent=Msa0264150-mRNA-1
Gene Sequence

>Msa0264150

ATGAAAGAGCATGAGATGAAACTGCGTTGGTTTGATGCCGGTGAAAATGAAATTCTTAGATTTTTGTTGCGAATCAAGATGTCTGGGCGTGGAAAAGGTGGAAAGGGTTTGGGAAAGGGAGGAGCAAAACGACACCGTAAGGTGCTTCGTGATAACATTCAAGGAATAACGAAGCCTGCGATTCGTCGTTTGGCTCGTAGAGGAGGAGTGAAGCGTATCAGCGGTTTGATCTACGAAGAGACACGTGGCGTGTTGAAGATCTTTTTGGAGAATGTTATTCGTGATGCGGTTACTTACACAGAGCACGCTAGGAGAAAGACTGTTACTGCTATGGATGTTGTTTATGCATTGAAGAGACAAGGAAGGACTCTTTATGGATTTGGGGGTTAG

Protein sequence

>Msa0264150

MKEHEMKLRWFDAGENEILRFLLRIKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG*