AlfalfaGEDB | Msa0612080

M. sativa cultivar zhongmu-4 / Msa0612080

KEGG: -
GO: -
PFAM: PF00612.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0612080	XP_003608080.1	98.127	534	10	0	1	534	1	534	0.0	1068

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0612080	sp\|Q9M199\|IQD13_ARATH	51.232	568	190	18	1	533	1	516	3.02e-159	466

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0168410	Msa0612080	-0.808099	3.657590e-50	-8.615850e-47
Msa0515440	Msa0612080	-0.800508	1.394437e-48	-8.615850e-47
Msa0556660	Msa0612080	0.980380	4.369319e-150	-8.615850e-47
Msa0612080	Msa0652180	0.881285	2.725742e-70	-8.615850e-47
Msa0612080	Msa0694740	0.839006	2.050705e-57	-8.615850e-47
Msa0612080	Msa1236440	0.802307	5.970206e-49	-8.615850e-47
Msa0612080	Msa1277670	0.816069	6.687284e-52	-8.615850e-47
Msa0612080	Msa1363820	-0.811217	7.816604e-51	-8.615850e-47
Msa0612080	Msa1450440	0.811977	5.344987e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0612080	MtrunA17_Chr4g0045641	98.127	534	10	0	1	534	1	534	0.0	1068
Msa0612080	MtrunA17_Chr6g0462191	36.127	346	176	14	140	474	101	412	5.03e-39	147
Msa0612080	MtrunA17_Chr7g0263731	33.989	356	184	11	146	474	108	439	9.76e-37	142
Msa0612080	MtrunA17_Chr1g0181581	31.356	354	189	10	144	474	114	436	2.70e-34	135
Msa0612080	MtrunA17_Chr4g0020671	25.933	536	269	19	3	522	4	427	9.33e-33	130
Msa0612080	MtrunA17_Chr8g0346021	27.947	526	284	17	1	472	1	485	2.55e-32	130
Msa0612080	MtrunA17_Chr1g0200161	37.297	185	107	4	144	327	139	315	1.12e-31	127
Msa0612080	MtrunA17_Chr7g0273861	28.235	340	181	10	142	476	121	402	3.98e-28	116
Msa0612080	MtrunA17_Chr4g0025441	33.724	341	170	17	148	479	98	391	2.01e-24	105
Msa0612080	MtrunA17_Chr2g0316401	31.351	185	107	5	137	316	65	234	4.41e-20	91.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0612080	AT3G59690.2	51.232	568	190	18	1	533	1	516	3.07e-160	466
Msa0612080	AT3G59690.1	51.232	568	190	18	1	533	1	516	3.07e-160	466
Msa0612080	AT2G43680.4	52.550	451	140	16	92	534	284	668	9.92e-124	378
Msa0612080	AT2G43680.4	58.696	138	41	5	1	126	1	134	2.09e-25	110
Msa0612080	AT2G43680.2	52.550	451	140	16	92	534	284	668	9.92e-124	378
Msa0612080	AT2G43680.2	58.696	138	41	5	1	126	1	134	2.09e-25	110
Msa0612080	AT2G43680.3	52.550	451	140	16	92	534	284	668	9.92e-124	378
Msa0612080	AT2G43680.3	58.696	138	41	5	1	126	1	134	2.09e-25	110
Msa0612080	AT2G43680.5	52.550	451	140	16	92	534	284	668	9.92e-124	378
Msa0612080	AT2G43680.5	58.696	138	41	5	1	126	1	134	2.09e-25	110

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Find 179 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGGAATGCTACTGAGA+TGG	0.487048	4_2:+60457158	Msa0612080:exon
AAAGAAGGGTATGGTATGGT+TGG	0.523898	4_2:-60455887	None:intergenic
AAAGAGAAGAAGAAAGGTGT+AGG	0.565399	4_2:+60458055	Msa0612080:CDS
AAAGGTTTGGTAAGGCTTCA+AGG	0.407441	4_2:+60458766	Msa0612080:CDS
AAATAAAGAAGGGTATGGTA+TGG	0.583286	4_2:-60455891	None:intergenic
AAATTACCTTCCCCTTAGAG+TGG	0.617889	4_2:-60457227	None:intergenic
AACAACAAGTACTTGCAATT+AGG	0.413110	4_2:+60458167	Msa0612080:CDS
AACAGGAATGCTACTGAGAT+GGG	0.502497	4_2:+60457159	Msa0612080:exon
AAGATCCAGGCTGCTTACAG+AGG	0.646831	4_2:+60458418	Msa0612080:CDS
AAGCTCACCAGAACGATCGA+CGG	0.622940	4_2:-60456914	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGAAAATAAAGAAGGGTA+TGG	-	chr4_2:60455899-60455918	None:intergenic	30.0%
AAACTCCATAAAAAGGTGAA+AGG	+	chr4_2:60455998-60456017	Msa0612080:five_prime_UTR	30.0%
CAAGAAAAGTAACAAACCAA+AGG	+	chr4_2:60456030-60456049	Msa0612080:five_prime_UTR	30.0%
AAGTAACAAACCAAAGGAAT+TGG	+	chr4_2:60456036-60456055	Msa0612080:five_prime_UTR	30.0%
TGTTATGAATCATGTTGTGT+TGG	+	chr4_2:60456366-60456385	Msa0612080:intron	30.0%
TGATACATAAATCTTCTGAC+AGG	-	chr4_2:60456493-60456512	None:intergenic	30.0%
TTATGAACATGTGAAAGAGA+AGG	-	chr4_2:60456552-60456571	None:intergenic	30.0%
TTGTTTAGACAACCAATCTA+AGG	-	chr4_2:60456713-60456732	None:intergenic	30.0%
AGGATATACAACAATCAACA+TGG	-	chr4_2:60456987-60457006	None:intergenic	30.0%
TGAATTCCTCATATATTTGG+AGG	+	chr4_2:60457045-60457064	Msa0612080:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	60455792	60460425	60455792	ID=Msa0612080;Name=Msa0612080
chr4_2	mRNA	60455792	60460425	60455792	ID=Msa0612080-mRNA-1;Parent=Msa0612080;Name=Msa0612080-mRNA-1;_AED=0.12;_eAED=0.12;_QI=536\|1\|1\|1\|0.66\|0.57\|7\|224\|534
chr4_2	exon	60455792	60456257	60455792	ID=Msa0612080-mRNA-1:exon:16278;Parent=Msa0612080-mRNA-1
chr4_2	exon	60456882	60456928	60456882	ID=Msa0612080-mRNA-1:exon:16279;Parent=Msa0612080-mRNA-1
chr4_2	exon	60457154	60457242	60457154	ID=Msa0612080-mRNA-1:exon:16280;Parent=Msa0612080-mRNA-1
chr4_2	exon	60458034	60458447	60458034	ID=Msa0612080-mRNA-1:exon:16281;Parent=Msa0612080-mRNA-1
chr4_2	exon	60458742	60458975	60458742	ID=Msa0612080-mRNA-1:exon:16282;Parent=Msa0612080-mRNA-1
chr4_2	exon	60459137	60459268	60459137	ID=Msa0612080-mRNA-1:exon:16283;Parent=Msa0612080-mRNA-1
chr4_2	exon	60459443	60460425	60459443	ID=Msa0612080-mRNA-1:exon:16284;Parent=Msa0612080-mRNA-1
chr4_2	five_prime_UTR	60455792	60456257	60455792	ID=Msa0612080-mRNA-1:five_prime_utr;Parent=Msa0612080-mRNA-1
chr4_2	five_prime_UTR	60456882	60456928	60456882	ID=Msa0612080-mRNA-1:five_prime_utr;Parent=Msa0612080-mRNA-1
chr4_2	five_prime_UTR	60457154	60457176	60457154	ID=Msa0612080-mRNA-1:five_prime_utr;Parent=Msa0612080-mRNA-1
chr4_2	CDS	60457177	60457242	60457177	ID=Msa0612080-mRNA-1:cds;Parent=Msa0612080-mRNA-1
chr4_2	CDS	60458034	60458447	60458034	ID=Msa0612080-mRNA-1:cds;Parent=Msa0612080-mRNA-1
chr4_2	CDS	60458742	60458975	60458742	ID=Msa0612080-mRNA-1:cds;Parent=Msa0612080-mRNA-1
chr4_2	CDS	60459137	60459268	60459137	ID=Msa0612080-mRNA-1:cds;Parent=Msa0612080-mRNA-1
chr4_2	CDS	60459443	60460201	60459443	ID=Msa0612080-mRNA-1:cds;Parent=Msa0612080-mRNA-1
chr4_2	three_prime_UTR	60460202	60460425	60460202	ID=Msa0612080-mRNA-1:three_prime_utr;Parent=Msa0612080-mRNA-1

Gene Sequence

>Msa0612080

ATGGGAAAGAAGGGGAGTTGGTTTTCAGCAATCAAAAGGGTTTTTACACACCACTCTAAGGGGAAGGATTCAGAAAACAAAAGCACAAAAGAGAAGAAGAAAGGTGTAGGAAAACTAAAGCATGGAGAGACCAATTCTTTCATCCCCCTCTTCAGAGAACCAAGCAGCATTGAGAAAATATTTGGGGACTTTGAAAGAGAACAACAAGTACTTGCAATTAGGCCTCCCACACCTCCCGAGCGACCAAAAACGCCACCTTTCGTCCCTCCTAGAGTTGCTTCTCCTAGGCCTCCTTCTCCTAAGCCTCCTTCTCCAAGGGATCCATCTCCAAGGGCCGCTTCTCCGCGAGTTACCTCTCCGAAAGCGGCATCTTCGCGGAATGTTCATCAACACAAGGAGGTTCGCAACAGACCAGAACCAACTTTACAGAACCAGCATGTCTCGGCGACTAAGATCCAGGCTGCTTACAGAGGTTATATGGCCAGGAAGAGTTTTAGAGCTCTGAAAGGTTTGGTAAGGCTTCAAGGAGTGGTAAGAGGACAGAATGTGAAGAGGCAGACAGTTAATGCCATGAAACACATGCAGCTGTTAGTGCGAGTTCAGTCTCAGATTCAATCTCAAAGAATCCAGATGTTAGAAAACCAGGCACGATATCAAGCCGAGTACAAGAATGAAGCTGGAAGTACCTTGGGGAAAAGTGCTTTAGGACATGGTTCTGAGGCAGGTAACAATGAAGATTGGGATGATAGCTTACTGACAAAAGAGGAAGTAGAAGCGAGGTTGCAGAGGAAGGTTGAAGCAATCATCAAAAGAGAGAGATCAATGGCATTTGCATATTCACATCAGTTATGGAAGGCCACTCCAAAATCAACTCAAACGCCTGTGACAGATACGCGATCGAGCGGATTCCCATGGTGGTGGAACTGGTTGGAAAGACAATTACCTGCATCAAACCCACAAGAAAAACAGGTCCTGAAGAATTTCCAATTCACACCACCAAGACCTTATTCGGAACAAAAGACAAGTCCAAGACCTGGCTCAAGCTCTCAAAGGCCTTTTGCCTTTGATAACATGGATACACCAACTCCAAAATCAACAAGATCGACTATATTTCCATCTTCAAAACCATCTAGAACTCCTCCATTTAGAACTCCACAAGGAAACACTTCAAGCGTGACGTCAAAATATTCAAGGCCAAGGGGAGTAGGATCCAATTCACCTTTCGACGTACCATTGAAGGACGATGACAGTCTCACAAGCTGTCCACCGTTCTCCGTTCCAAACTACATGGCTCCAACTGTTTCTGCCAAGGCCAAAGTACGCGCTAGTAGTAATCCAAGAGAAAGATTTGGCGGTGGTAGTAGTGGCTGTGCAACTCCAACAAGCACTGATTCCAAGAGGAGAGTCTCATTTCCTTTGTCACAAGGAATAGGGTCATTCAAATGGAATAAAGGGTCAATGTTCTCTAGAAATAAGGATTCTCATGGCTCTCACAGGACTCCAGATAAATACCAGTCACTTGAATCTATTGGAAATGTGAGTGTGGATTCAGCAGTATCCTTGCCTGCAAGGGTTGAAAGAAAGCCTTTTACAAGATTTGTGTGA

Protein sequence

>Msa0612080

MGKKGSWFSAIKRVFTHHSKGKDSENKSTKEKKKGVGKLKHGETNSFIPLFREPSSIEKIFGDFEREQQVLAIRPPTPPERPKTPPFVPPRVASPRPPSPKPPSPRDPSPRAASPRVTSPKAASSRNVHQHKEVRNRPEPTLQNQHVSATKIQAAYRGYMARKSFRALKGLVRLQGVVRGQNVKRQTVNAMKHMQLLVRVQSQIQSQRIQMLENQARYQAEYKNEAGSTLGKSALGHGSEAGNNEDWDDSLLTKEEVEARLQRKVEAIIKRERSMAFAYSHQLWKATPKSTQTPVTDTRSSGFPWWWNWLERQLPASNPQEKQVLKNFQFTPPRPYSEQKTSPRPGSSSQRPFAFDNMDTPTPKSTRSTIFPSSKPSRTPPFRTPQGNTSSVTSKYSRPRGVGSNSPFDVPLKDDDSLTSCPPFSVPNYMAPTVSAKAKVRASSNPRERFGGGSSGCATPTSTDSKRRVSFPLSQGIGSFKWNKGSMFSRNKDSHGSHRTPDKYQSLESIGNVSVDSAVSLPARVERKPFTRFV*