AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0652180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0652180 MtrunA17_Chr4g0045641 94.944 534 9 1 46 561 1 534 0.0 1021
Msa0652180 MtrunA17_Chr6g0462191 33.811 349 162 15 185 501 101 412 3.67e-29 120
Msa0652180 MtrunA17_Chr7g0263731 32.773 357 169 14 191 501 108 439 2.49e-27 115
Msa0652180 MtrunA17_Chr1g0181581 29.261 352 181 11 189 501 114 436 3.43e-26 111
Msa0652180 MtrunA17_Chr1g0200161 34.054 185 95 4 189 354 139 315 8.90e-25 107
Msa0652180 MtrunA17_Chr4g0020671 30.000 260 125 8 48 304 4 209 9.58e-25 107
Msa0652180 MtrunA17_Chr7g0273861 27.273 330 179 10 187 503 121 402 2.46e-23 102
Msa0652180 MtrunA17_Chr8g0346021 26.476 525 275 18 46 499 1 485 1.38e-22 101
Msa0652180 MtrunA17_Chr6g0472551 25.868 317 187 10 187 477 113 407 1.80e-17 85.1
Msa0652180 MtrunA17_Chr4g0025441 31.193 327 179 15 193 506 98 391 5.35e-15 77.4
Msa0652180 MtrunA17_Chr8g0389781 41.667 84 43 1 189 266 124 207 1.17e-13 73.2
Msa0652180 MtrunA17_Chr7g0273951 46.970 66 35 0 193 258 108 173 2.63e-13 71.6
Msa0652180 MtrunA17_Chr4g0060381 47.619 63 33 0 193 255 102 164 3.83e-13 72.0
Msa0652180 MtrunA17_Chr2g0330921 51.613 62 30 0 192 253 98 159 6.48e-13 70.5
Msa0652180 MtrunA17_Chr8g0371131 50.000 62 31 0 193 254 73 134 1.29e-12 65.5
Msa0652180 MtrunA17_Chr1g0204901 41.176 68 40 0 190 257 135 202 2.18e-12 69.3
Msa0652180 MtrunA17_Chr3g0135851 26.099 364 190 12 156 472 55 386 2.80e-12 68.9
Msa0652180 MtrunA17_Chr4g0057321 50.820 61 30 0 193 253 90 150 6.53e-12 67.8
Msa0652180 MtrunA17_Chr8g0340761 45.902 61 33 0 193 253 128 188 8.48e-12 67.4
Msa0652180 MtrunA17_Chr3g0126901 56.250 64 28 0 193 256 114 177 1.16e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0652180 AT3G59690.2 48.506 569 188 18 46 561 1 517 7.17e-143 423
Msa0652180 AT3G59690.1 48.506 569 188 18 46 561 1 517 7.17e-143 423
Msa0652180 AT2G43680.4 49.667 451 135 17 137 561 284 668 1.54e-108 339
Msa0652180 AT2G43680.4 58.696 138 41 5 46 171 1 134 2.73e-25 110
Msa0652180 AT2G43680.2 49.667 451 135 17 137 561 284 668 1.54e-108 339
Msa0652180 AT2G43680.2 58.696 138 41 5 46 171 1 134 2.73e-25 110
Msa0652180 AT2G43680.3 49.667 451 135 17 137 561 284 668 1.54e-108 339
Msa0652180 AT2G43680.3 58.696 138 41 5 46 171 1 134 2.73e-25 110
Msa0652180 AT2G43680.5 49.667 451 135 17 137 561 284 668 1.54e-108 339
Msa0652180 AT2G43680.5 58.696 138 41 5 46 171 1 134 2.73e-25 110
Msa0652180 AT2G43680.1 49.667 451 135 17 137 561 285 669 1.61e-108 339
Msa0652180 AT2G43680.1 55.396 139 45 5 46 171 1 135 2.13e-25 111
Msa0652180 AT5G03040.1 27.898 509 244 19 46 504 1 436 3.31e-29 120
Msa0652180 AT5G03040.3 27.898 509 244 19 46 504 1 436 3.31e-29 120
Msa0652180 AT5G03040.2 27.898 509 244 19 46 504 1 436 3.31e-29 120
Msa0652180 AT3G52290.1 31.046 306 159 10 190 470 107 385 5.80e-29 119
Msa0652180 AT1G01110.2 27.879 495 245 20 46 476 1 447 7.53e-26 111
Msa0652180 AT5G13460.1 28.221 326 158 11 163 476 90 351 2.90e-23 103
Msa0652180 AT4G00820.1 29.330 358 191 13 190 500 131 473 1.29e-21 99.0
Msa0652180 AT3G49260.1 28.428 299 163 6 193 468 122 392 4.08e-21 97.1
Msa0652180 AT3G49260.4 28.428 299 163 6 193 468 122 392 4.08e-21 97.1
Msa0652180 AT3G49260.2 28.428 299 163 6 193 468 122 392 4.08e-21 97.1
Msa0652180 AT3G49260.3 27.425 299 167 5 193 468 122 393 5.79e-21 96.7
Msa0652180 AT2G26410.2 32.461 191 85 8 183 346 140 313 6.30e-16 81.3
Msa0652180 AT2G26410.1 32.461 191 85 8 183 346 140 313 6.30e-16 81.3
Msa0652180 AT3G09710.1 34.706 170 84 6 190 341 107 267 1.45e-15 79.7
Msa0652180 AT2G26180.1 32.821 195 111 7 193 368 86 279 6.78e-15 77.4
Msa0652180 AT3G09710.2 33.333 177 91 6 190 341 107 281 1.29e-14 77.0
Msa0652180 AT4G10640.1 26.582 316 165 10 185 476 94 366 1.46e-14 76.3
Msa0652180 AT3G22190.3 34.078 179 89 5 193 352 90 258 5.98e-14 74.3
Msa0652180 AT3G22190.2 34.078 179 89 5 193 352 90 258 5.98e-14 74.3
Msa0652180 AT3G22190.4 34.078 179 89 5 193 352 90 258 5.98e-14 74.3
Msa0652180 AT3G22190.1 34.078 179 89 5 193 352 90 258 5.98e-14 74.3
Msa0652180 AT4G14750.1 45.588 68 37 0 190 257 104 171 6.01e-14 74.3
Msa0652180 AT1G18840.1 31.410 156 80 6 190 336 108 245 8.85e-14 74.7
Msa0652180 AT1G18840.3 31.410 156 80 6 190 336 108 245 8.85e-14 74.7
Msa0652180 AT1G18840.2 31.410 156 80 6 190 336 108 245 8.85e-14 74.7
Msa0652180 AT4G14750.3 47.692 65 34 0 193 257 166 230 9.39e-14 73.9
Msa0652180 AT4G14750.2 47.692 65 34 0 193 257 166 230 1.05e-13 73.9
Msa0652180 AT3G16490.1 48.387 62 32 0 193 254 109 170 2.45e-13 72.4
Msa0652180 AT5G62070.1 51.786 56 27 0 190 245 116 171 2.46e-13 72.4
Msa0652180 AT5G07240.1 46.774 62 33 0 190 251 105 166 2.96e-13 72.4
Msa0652180 AT5G07240.2 46.774 62 33 0 190 251 151 212 3.29e-13 72.4
Msa0652180 AT1G17480.1 47.541 61 32 0 193 253 96 156 4.50e-13 71.2
Msa0652180 AT1G74690.1 30.921 152 86 4 190 336 112 249 7.33e-13 71.6
Msa0652180 AT3G49380.1 37.634 93 55 1 190 279 109 201 1.25e-12 69.7
Msa0652180 AT3G51380.1 42.857 70 40 0 185 254 31 100 1.27e-12 64.7
Msa0652180 AT2G33990.1 29.048 210 124 8 193 390 49 245 1.97e-12 68.2
Msa0652180 AT5G03960.1 27.759 299 159 10 191 478 107 359 4.05e-12 68.6
Msa0652180 AT5G03960.3 27.759 299 159 10 191 478 108 360 4.18e-12 68.6
Msa0652180 AT5G03960.2 27.759 299 159 10 191 478 108 360 4.18e-12 68.6
Msa0652180 AT1G51960.1 42.857 77 39 1 193 269 102 173 4.71e-12 68.2
Msa0652180 AT4G29150.1 43.750 64 36 0 190 253 130 193 7.17e-12 67.8
Msa0652180 AT1G72670.1 43.077 65 37 0 187 251 89 153 7.51e-12 67.8

Find 158 sgRNAs with CRISPR-Local

Find 450 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAGCATTGAGAAAATATT+TGG 0.147656 4_3:+59894690 Msa0652180:CDS
ATAGTCGATCTTGTTGATTT+TGG 0.221689 4_3:-59896404 None:intergenic
AATCACACAAATCTTGTAAA+AGG 0.233035 4_3:-59896902 None:intergenic
GGCTTTCTTTCAACCCTTGC+AGG 0.240511 4_3:-59896881 None:intergenic
ACAGGCGTTTGAGTTGATTT+TGG 0.283729 4_3:-59896179 None:intergenic
TTTCCTTGTGGAGTTCTAAA+TGG 0.286373 4_3:-59896458 None:intergenic
TCAAGTGACTGGTATTTATC+TGG 0.291478 4_3:-59896818 None:intergenic
GTCAATGTTCTCTAGAAATA+AGG 0.300536 4_3:+59896772 Msa0652180:CDS
TTTCCTTTGTCACAAGGAAT+AGG 0.310912 4_3:+59896728 Msa0652180:CDS
GTGTGAATTGGAAATTCTTC+AGG 0.333924 4_3:-59896289 None:intergenic
CTCTTGGAATCAGTGCTTGT+TGG 0.334476 4_3:-59896695 None:intergenic
TTCAACTAACTTTACTTCAA+TGG 0.337534 4_3:-59892453 None:intergenic
TGAGAGCTTGAGCCAGGTCT+TGG 0.341364 4_3:-59896344 None:intergenic
TACCAGTCACTTGAATCTAT+TGG 0.350119 4_3:+59896827 Msa0652180:CDS
ACAGTTGGAGCCATGTAGTT+TGG 0.351130 4_3:-59896596 None:intergenic
GGCTGCTTACAGAGGTTATA+TGG 0.351906 4_3:+59894986 Msa0652180:CDS
CACACCACCAAGACCATATT+CGG 0.361031 4_3:+59896307 Msa0652180:CDS
TTCCTTTGTCACAAGGAATA+GGG 0.362580 4_3:+59896729 Msa0652180:CDS
CAGAGCTCTAAAACTCTTCC+TGG 0.366223 4_3:-59895354 None:intergenic
TTCCGCGAAGATGCCGCTTT+CGG 0.379549 4_3:-59894885 None:intergenic
GCAGCATTGAGAAAATATTT+GGG 0.385983 4_3:+59894691 Msa0652180:CDS
TGGTTCTGTAAAGTTGGTTC+TGG 0.389882 4_3:-59894939 None:intergenic
TAACAGCTGCATGTGTTTCA+TGG 0.394012 4_3:-59895441 None:intergenic
CGGTACATCGAAAGGTGAAT+TGG 0.396785 4_3:-59896528 None:intergenic
ATGGTCTTGGTGGTGTGAAT+TGG 0.398616 4_3:-59896301 None:intergenic
CTAAATGGAGGAGTTCTAGA+TGG 0.403634 4_3:-59896443 None:intergenic
ACCTTTCGATGTACCGTTGA+AGG 0.404025 4_3:+59896535 Msa0652180:CDS
GGCCTTTGAGAGCTTGAGCC+AGG 0.404316 4_3:-59896350 None:intergenic
AAAGGTTTGGTAAGGCTTCA+AGG 0.407441 4_3:+59895377 Msa0652180:CDS
AATGAAGCTGGAAGTACCTT+GGG 0.409619 4_3:+59895542 Msa0652180:CDS
TCAACTAACTTTACTTCAAT+GGG 0.411536 4_3:-59892452 None:intergenic
AACAACAAGTACTTGCAATT+AGG 0.413110 4_3:+59894727 Msa0652180:CDS
TGCTACTGAGATGGGAAAGA+AGG 0.416486 4_3:+59893727 Msa0652180:CDS
CCACCGCCAAATCTTTCTCT+TGG 0.423496 4_3:-59896653 None:intergenic
ACCTTGGGGAAAAGTGCTTT+AGG 0.429209 4_3:+59895557 Msa0652180:CDS
TTAAACTTACAGGAAGAAAC+AGG 0.431182 4_3:+59893702 Msa0652180:intron
TTATAGCATAGCAACACATT+AGG 0.434484 4_3:-59897135 None:intergenic
AGGCAGGTAACAATGAAGAT+TGG 0.438407 4_3:+59895752 Msa0652180:CDS
AGTAATCCAAGAGAAAGATT+TGG 0.440973 4_3:+59896647 Msa0652180:CDS
TTTGGTCGCTCGGGAGGTGT+GGG 0.442251 4_3:-59894753 None:intergenic
GCCCTTGGAGATGGATCCCT+TGG 0.448654 4_3:-59894840 None:intergenic
ACTCGGCTTGATATCGTGCC+TGG 0.450049 4_3:-59895514 None:intergenic
TATGATTGAGAGTGTATTAG+TGG 0.456025 4_3:+59897002 Msa0652180:three_prime_UTR
AAGGAATAGGGTCATTCAAA+TGG 0.460963 4_3:+59896741 Msa0652180:CDS
AGGAAATGAGACTCTCCTCT+TGG 0.466551 4_3:-59896711 None:intergenic
GGCAGGTAACAATGAAGATT+GGG 0.469502 4_3:+59895753 Msa0652180:CDS
GGCTTAGGAGAAGGAGGCCT+AGG 0.481446 4_3:-59894810 None:intergenic
TCCAGCTTCATTCTTGTACT+CGG 0.482184 4_3:-59895531 None:intergenic
GGTCATTCAAATGGAACAAA+GGG 0.485456 4_3:+59896750 Msa0652180:CDS
GATTCCCATGGTGGTGGAAC+TGG 0.486021 4_3:+59896222 Msa0652180:CDS
AAACAGGAATGCTACTGAGA+TGG 0.487048 4_3:+59893718 Msa0652180:CDS
GAGCTCTGAAAGGTTTGGTA+AGG 0.487495 4_3:+59895369 Msa0652180:CDS
GCGCGATGTCAAAATATTCA+AGG 0.487546 4_3:+59896489 Msa0652180:CDS
CTCCGAAAGCGGCATCTTCG+CGG 0.487625 4_3:+59894883 Msa0652180:CDS
GGAGAAGCGGCCCTTGGAGA+TGG 0.488016 4_3:-59894849 None:intergenic
AGATGGGAAAGAAGGGGAGT+TGG 0.488180 4_3:+59893735 Msa0652180:CDS
TGCTGCTTGGTTCTCTGAAG+AGG 0.488717 4_3:-59894674 None:intergenic
TCTTTCAACCCTTGCAGGCA+AGG 0.489990 4_3:-59896876 None:intergenic
TCCCTTGGAGAAGGAGGCTT+AGG 0.492264 4_3:-59894825 None:intergenic
TGTCTCGGCGACTAAGATCC+AGG 0.493274 4_3:+59894965 Msa0652180:CDS
CTCCTAAGCCTCCTTCTCCA+AGG 0.498883 4_3:+59894823 Msa0652180:CDS
GCCGAGTACAAGAATGAAGC+TGG 0.501793 4_3:+59895530 Msa0652180:CDS
CTCCTAGAGTTGCTTCTCCT+AGG 0.502361 4_3:+59894793 Msa0652180:CDS
AACAGGAATGCTACTGAGAT+GGG 0.502497 4_3:+59893719 Msa0652180:CDS
ACATGCTGGTTCTGTAAAGT+TGG 0.510843 4_3:-59894945 None:intergenic
ACTCGCGGAGAAGCGGCCCT+TGG 0.513311 4_3:-59894855 None:intergenic
GAATGAAGCTGGAAGTACCT+TGG 0.515373 4_3:+59895541 Msa0652180:CDS
AGGCTTCAAGGAGTGGTAAG+AGG 0.518282 4_3:+59895389 Msa0652180:CDS
GGTCGCTCGGGAGGTGTGGG+AGG 0.522529 4_3:-59894750 None:intergenic
TATTCAAGGCCAAGGGGAGT+AGG 0.527231 4_3:+59896503 Msa0652180:CDS
AGCACAAAAGAGAAGAAGAA+AGG 0.528405 4_3:+59894609 Msa0652180:CDS
CCAACCAGTTCCACCACCAT+GGG 0.530319 4_3:-59896226 None:intergenic
GAATTGGATCCTACTCCCCT+TGG 0.530551 4_3:-59896512 None:intergenic
CTCGATCGCGTATCTGTCAC+AGG 0.530625 4_3:-59896197 None:intergenic
GACCCTATTCCTTGTGACAA+AGG 0.531331 4_3:-59896731 None:intergenic
GCTACTGAGATGGGAAAGAA+GGG 0.538126 4_3:+59893728 Msa0652180:CDS
TTCCAATAGATTCAAGTGAC+TGG 0.538161 4_3:-59896829 None:intergenic
TCCTAAGCCTCCTTCTCCAA+GGG 0.542552 4_3:+59894824 Msa0652180:CDS
AGCAGTATCCTTGCCTGCAA+GGG 0.545645 4_3:+59896868 Msa0652180:CDS
ACTTCAATGGGAAGACTATG+TGG 0.546156 4_3:-59892440 None:intergenic
ATTACTACTAGCGCGTACTT+TGG 0.546568 4_3:-59896630 None:intergenic
GCTGCTTGGTTCTCTGAAGA+GGG 0.546752 4_3:-59894673 None:intergenic
GTCTCATTTCCTTTGTCACA+AGG 0.546913 4_3:+59896722 Msa0652180:CDS
AGAAGCGAGGTTGCAGAGGA+AGG 0.547317 4_3:+59895804 Msa0652180:CDS
TCCATGTTATCAAAGGCAAA+AGG 0.548096 4_3:-59896371 None:intergenic
TCCTTCAACGGTACATCGAA+AGG 0.548425 4_3:-59896536 None:intergenic
TGTCAAAATATTCAAGGCCA+AGG 0.548648 4_3:+59896495 Msa0652180:CDS
CGAGCGGATTCCCATGGTGG+TGG 0.550081 4_3:+59896216 Msa0652180:CDS
TCTTAGTCGCCGAGACATGC+TGG 0.550419 4_3:-59894959 None:intergenic
TTGGCCTTGGCAGAAACAGT+TGG 0.550995 4_3:-59896611 None:intergenic
TGATAGCTTACTGACAAAAG+AGG 0.552866 4_3:+59895777 Msa0652180:CDS
AAGTAGAAGCGAGGTTGCAG+AGG 0.554875 4_3:+59895800 Msa0652180:CDS
CAGCAGTATCCTTGCCTGCA+AGG 0.555494 4_3:+59896867 Msa0652180:CDS
TACACACCACTCTAAGGGGA+AGG 0.556316 4_3:+59893781 Msa0652180:CDS
GATGGATCCCTTGGAGAAGG+AGG 0.557622 4_3:-59894831 None:intergenic
AATCCAGATGTTAGAAAACC+AGG 0.559159 4_3:+59895496 Msa0652180:CDS
ACTAGCGCGTACTTTGGCCT+TGG 0.561095 4_3:-59896624 None:intergenic
AGGATTCTCATGGCTCTCAC+AGG 0.561873 4_3:+59896792 Msa0652180:CDS
TGTTCCGAATATGGTCTTGG+TGG 0.562203 4_3:-59896311 None:intergenic
GCGCTTGAAGTGTTTCCTTG+TGG 0.562520 4_3:-59896470 None:intergenic
GTCAAAATATTCAAGGCCAA+GGG 0.562606 4_3:+59896496 Msa0652180:CDS
CTAGGAGAAGCAACTCTAGG+AGG 0.564157 4_3:-59894792 None:intergenic
TATAACCTCTGTAAGCAGCC+TGG 0.564353 4_3:-59894983 None:intergenic
AAAGAGAAGAAGAAAGGTGT+AGG 0.565399 4_3:+59894615 Msa0652180:CDS
GGCTCCAACTGTTTCTGCCA+AGG 0.565988 4_3:+59896607 Msa0652180:CDS
CCTTGTGGAGTTCTAAATGG+AGG 0.567299 4_3:-59896455 None:intergenic
AGATTTGGCGGTGGTAGTAG+TGG 0.568746 4_3:+59896662 Msa0652180:CDS
ATGTAGTTTGGAACGGAGAA+CGG 0.569098 4_3:-59896584 None:intergenic
GGGAAAAGTGCTTTAGGACA+TGG 0.569234 4_3:+59895563 Msa0652180:CDS
GGGTCATTCAAATGGAACAA+AGG 0.569616 4_3:+59896749 Msa0652180:CDS
TTTGGTAAGGCTTCAAGGAG+TGG 0.571343 4_3:+59895382 Msa0652180:CDS
AATCCAAGAGAAAGATTTGG+CGG 0.577080 4_3:+59896650 Msa0652180:CDS
GGAGATGGATCCCTTGGAGA+AGG 0.577659 4_3:-59894834 None:intergenic
TGCTTGGTTCTCTGAAGAGG+GGG 0.580393 4_3:-59894671 None:intergenic
CTCCAAGGGATCCATCTCCA+AGG 0.580760 4_3:+59894838 Msa0652180:CDS
GGTGTAGGAAAACTAAAGCA+TGG 0.583060 4_3:+59894630 Msa0652180:CDS
AGAGGTAACTCGCGGAGAAG+CGG 0.585392 4_3:-59894862 None:intergenic
TCCAACCAGTTCCACCACCA+TGG 0.585925 4_3:-59896227 None:intergenic
TGGTGTATCCATGTTATCAA+AGG 0.590388 4_3:-59896378 None:intergenic
GGAGAAGGAGGCTTAGGAGA+AGG 0.593364 4_3:-59894819 None:intergenic
TGGAGCCATGTAGTTTGGAA+CGG 0.593443 4_3:-59896591 None:intergenic
GGCCTAGGAGAAGCAACTCT+AGG 0.595533 4_3:-59894795 None:intergenic
GACCTGGCTCAAGCTCTCAA+AGG 0.598818 4_3:+59896348 Msa0652180:CDS
TCCAAGGGATCCATCTCCAA+GGG 0.601031 4_3:+59894839 Msa0652180:CDS
TAGGAGAAGCAACTCTAGGA+GGG 0.605104 4_3:-59894791 None:intergenic
CCTCCATTTAGAACTCCACA+AGG 0.606509 4_3:+59896455 Msa0652180:CDS
GAAGGAGGCTTAGGAGAAGG+AGG 0.609274 4_3:-59894816 None:intergenic
TTTACAGAACCAGCATGTCT+CGG 0.610936 4_3:+59894950 Msa0652180:CDS
TCTAGAAATAAGGATTCTCA+TGG 0.612036 4_3:+59896782 Msa0652180:CDS
GTTCTCCGTTCCAAACTACA+TGG 0.616839 4_3:+59896586 Msa0652180:CDS
CGCGATCGAGCGGATTCCCA+TGG 0.617077 4_3:+59896210 Msa0652180:CDS
AAATTACCTTCCCCTTAGAG+TGG 0.617889 4_3:-59893787 None:intergenic
ATCTATTGGAAATGTGAGTG+TGG 0.620035 4_3:+59896841 Msa0652180:CDS
ACTCTAGGAGGGACGAAAGG+TGG 0.620082 4_3:-59894780 None:intergenic
ACTATGTTAACAGTTATGGA+AGG 0.620863 4_3:+59896151 Msa0652180:intron
AGACTATCATCATCCTTCAA+CGG 0.623430 4_3:-59896548 None:intergenic
CCAAGAGAAAGATTTGGCGG+TGG 0.631411 4_3:+59896653 Msa0652180:CDS
CAAAAGACAAGTCCAAGACC+TGG 0.632412 4_3:+59896332 Msa0652180:CDS
CAGCATTGAGAAAATATTTG+GGG 0.632868 4_3:+59894692 Msa0652180:CDS
GCGAGTTACCTCTCCGAAAG+CGG 0.633756 4_3:+59894872 Msa0652180:CDS
GATCGAGCGGATTCCCATGG+TGG 0.638826 4_3:+59896213 Msa0652180:CDS
CTGCTTGGTTCTCTGAAGAG+GGG 0.639910 4_3:-59894672 None:intergenic
GCAACTCTAGGAGGGACGAA+AGG 0.644669 4_3:-59894783 None:intergenic
AAGCTCTGTGACAACTAACA+AGG 0.646533 4_3:+59892826 Msa0652180:CDS
AAGATCCAGGCTGCTTACAG+AGG 0.646831 4_3:+59894978 Msa0652180:CDS
TCAAAATATTCAAGGCCAAG+GGG 0.647362 4_3:+59896497 Msa0652180:CDS
TAAGAGGACAGAATGTGAAG+AGG 0.651089 4_3:+59895405 Msa0652180:CDS
CAACAAGCACTGATTCCAAG+AGG 0.666446 4_3:+59896696 Msa0652180:CDS
GTGACAGATACGCGATCGAG+CGG 0.669089 4_3:+59896200 Msa0652180:CDS
CCCATGGTGGTGGAACTGGT+TGG 0.672536 4_3:+59896226 Msa0652180:CDS
CGAAGATGCCGCTTTCGGAG+AGG 0.682021 4_3:-59894880 None:intergenic
ATGAAGCTGGAAGTACCTTG+GGG 0.697268 4_3:+59895543 Msa0652180:CDS
GCGGAATGTTCATCAACACA+AGG 0.697723 4_3:+59894902 Msa0652180:CDS
CAAAAGAGGAAGTAGAAGCG+AGG 0.699187 4_3:+59895791 Msa0652180:CDS
TAGTTTGGAACGGAGAACGG+TGG 0.711322 4_3:-59896581 None:intergenic
CTACTGAGATGGGAAAGAAG+GGG 0.714772 4_3:+59893729 Msa0652180:CDS
GCTTTCGGAGAGGTAACTCG+CGG 0.724827 4_3:-59894870 None:intergenic
GAATGTTCATCAACACAAGG+AGG 0.727547 4_3:+59894905 Msa0652180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAATATACTTTTTTTTTTA+AGG - chr4_3:59890497-59890516 None:intergenic 10.0%
!! AAACAATTAAATATGATATT+TGG - chr4_3:59891342-59891361 None:intergenic 10.0%
!!! ATAGTTTAATATTTTATTAC+AGG + chr4_3:59891374-59891393 Msa0652180:intron 10.0%
!!! TATCTTATATTTTTGTTATA+TGG + chr4_3:59892236-59892255 Msa0652180:intron 10.0%
!! GTTTATAATAAGAATTAATA+AGG + chr4_3:59892337-59892356 Msa0652180:intron 10.0%
!!! TTATTTTTCTTTTTTACTTA+AGG - chr4_3:59893520-59893539 None:intergenic 10.0%
!!! CTAATTTATTTTTGATAATT+TGG + chr4_3:59895712-59895731 Msa0652180:intron 10.0%
!!! TTTTATTTATGCTTTTATTT+TGG + chr4_3:59895904-59895923 Msa0652180:intron 10.0%
!!! TTTTTTTTATTAGTTTACAA+TGG - chr4_3:59897054-59897073 None:intergenic 10.0%
!!! TGTACTTTATTTTTTTTCTT+TGG + chr4_3:59890165-59890184 Msa0652180:intron 15.0%
!!! TTTATGTGTTTATTGTTTTA+AGG + chr4_3:59890279-59890298 Msa0652180:intron 15.0%
!! TAAATTAACTATCAAAATCA+TGG - chr4_3:59891061-59891080 None:intergenic 15.0%
!!! AAACTCTAATTTTTTTTTCA+CGG + chr4_3:59891250-59891269 Msa0652180:intron 15.0%
!!! CTTAACTTTATCATTTTTTT+AGG - chr4_3:59891419-59891438 None:intergenic 15.0%
!! TCTAATTTACTTATTCTATT+TGG - chr4_3:59891513-59891532 None:intergenic 15.0%
!!! TTAATTTGTCATACATATTT+TGG - chr4_3:59891604-59891623 None:intergenic 15.0%
!! AATGTAGAAAATAGAATTAA+CGG - chr4_3:59891845-59891864 None:intergenic 15.0%
!!! TCTATTTTCTACATTATAAT+TGG + chr4_3:59891850-59891869 Msa0652180:intron 15.0%
!! ATATGAAATTATGAAAATGT+TGG + chr4_3:59892295-59892314 Msa0652180:intron 15.0%
!! GAATTTAGTACATTATAAAA+CGG - chr4_3:59892401-59892420 None:intergenic 15.0%
!!! TAAATTCTTTTTCTTTATGT+AGG + chr4_3:59892414-59892433 Msa0652180:intron 15.0%
!!! CTTATAGTAATTTAGATTTT+TGG - chr4_3:59892549-59892568 None:intergenic 15.0%
!!! TTAATTTTCTTTGTATTTGT+GGG - chr4_3:59892573-59892592 None:intergenic 15.0%
!!! ATTAATTTTCTTTGTATTTG+TGG - chr4_3:59892574-59892593 None:intergenic 15.0%
!! TAATTATAAACTCCATAAAA+AGG + chr4_3:59892590-59892609 Msa0652180:intron 15.0%
!! TTGGATATAATTGAATTAAA+AGG - chr4_3:59893058-59893077 None:intergenic 15.0%
!! AAAAATGAAAGATGAATTAT+TGG - chr4_3:59893196-59893215 None:intergenic 15.0%
!! ACATATTAAAACAATGAATA+AGG - chr4_3:59893568-59893587 None:intergenic 15.0%
!! TTAAGATATAGTAAGATTTA+AGG - chr4_3:59893681-59893700 None:intergenic 15.0%
!! ATATCTTAATTTAAACTTAC+AGG + chr4_3:59893692-59893711 Msa0652180:intron 15.0%
!!! AATTTTCTTAATATTACCAA+AGG - chr4_3:59894150-59894169 None:intergenic 15.0%
!!! ATTATTTGAAATATTGCAAA+AGG + chr4_3:59894309-59894328 Msa0652180:intron 15.0%
!! TAAGATAAGTATTAAGTATT+TGG + chr4_3:59895172-59895191 Msa0652180:intron 15.0%
!!! GTTACTTTATATAAAATTGA+TGG - chr4_3:59895619-59895638 None:intergenic 15.0%
!!! AATTAGTCTGATTTATATAA+AGG - chr4_3:59895698-59895717 None:intergenic 15.0%
!!! ATTTTTGTTTCGATTAAAAT+AGG - chr4_3:59895951-59895970 None:intergenic 15.0%
!! AAAATCTTAGATTTAGAAAT+GGG - chr4_3:59895983-59896002 None:intergenic 15.0%
!! AAAAATCTTAGATTTAGAAA+TGG - chr4_3:59895984-59896003 None:intergenic 15.0%
!! AAACATTAGACAAATAAAAA+TGG - chr4_3:59896946-59896965 None:intergenic 15.0%
!!! TTTTTATTTGTCTAATGTTT+TGG + chr4_3:59896946-59896965 Msa0652180:three_prime_UTR 15.0%
!! AAAAACATAATAGGAAATAA+TGG + chr4_3:59897076-59897095 Msa0652180:three_prime_UTR 15.0%
!! TATATATATATATGGTGGTA+TGG - chr4_3:59889748-59889767 None:intergenic 20.0%
!! GTATGTATATATATATATGG+TGG - chr4_3:59889753-59889772 None:intergenic 20.0%
!! GGTGTATGTATATATATATA+TGG - chr4_3:59889756-59889775 None:intergenic 20.0%
!! ATATATATACATACACCAAA+TGG + chr4_3:59889759-59889778 Msa0652180:intron 20.0%
!!! GTTTATTGTTTTAAGGTTTT+TGG + chr4_3:59890286-59890305 Msa0652180:intron 20.0%
!!! AAGTGAGATTTGTAAATTTT+TGG - chr4_3:59890746-59890765 None:intergenic 20.0%
!! CATTTCTCAAATATGAAATA+GGG - chr4_3:59891166-59891185 None:intergenic 20.0%
!! TCATTTCTCAAATATGAAAT+AGG - chr4_3:59891167-59891186 None:intergenic 20.0%
!! TAAATTAGAGATTGTTAAAG+AGG + chr4_3:59891524-59891543 Msa0652180:intron 20.0%
!! AAATTATGAAAATGTTGGTA+AGG + chr4_3:59892300-59892319 Msa0652180:intron 20.0%
!! ATTATAAAACGGTTTATGTT+TGG - chr4_3:59892390-59892409 None:intergenic 20.0%
!!! ATTTGAAGATATAGCTTTTA+AGG + chr4_3:59892897-59892916 Msa0652180:intron 20.0%
!!! TTCATTTTTCAATTCTTATC+AGG + chr4_3:59893207-59893226 Msa0652180:CDS 20.0%
!!! TTTTTTAATTGATCATGTGA+TGG + chr4_3:59893246-59893265 Msa0652180:intron 20.0%
!! TATTGAATTCCTCATATATT+TGG + chr4_3:59893603-59893622 Msa0652180:intron 20.0%
!!! TCTTATAATTGGTTTTCTTA+TGG + chr4_3:59893893-59893912 Msa0652180:intron 20.0%
!!! TTTTTTGTCAATAAGAGTTT+AGG - chr4_3:59894087-59894106 None:intergenic 20.0%
!! TAACCTTGATATGAATTAAA+AGG - chr4_3:59894233-59894252 None:intergenic 20.0%
!!! AAGTATTTGGTTTCTAAATT+TGG + chr4_3:59895185-59895204 Msa0652180:intron 20.0%
!! AAAAAAGCTGGTAAAATTAA+TGG - chr4_3:59895226-59895245 None:intergenic 20.0%
!! AAAAAAGCTGGTAAAATTAA+TGG - chr4_3:59895226-59895245 None:intergenic 20.0%
!! AAAGCATAAATAAAAAGTCT+AGG - chr4_3:59895899-59895918 None:intergenic 20.0%
!! TCATAAAAAATTAGCTAAAC+TGG - chr4_3:59896047-59896066 None:intergenic 20.0%
! GAAAAAAAATAAAGTACAGC+AGG - chr4_3:59890163-59890182 None:intergenic 25.0%
!! CAGGATTTTTATGGATATTA+TGG - chr4_3:59890675-59890694 None:intergenic 25.0%
! AGTTAATTTATATCAACCAG+TGG + chr4_3:59891071-59891090 Msa0652180:intron 25.0%
! GTATGACAAATTAAGTGTAA+TGG + chr4_3:59891610-59891629 Msa0652180:intron 25.0%
!! TTTGTTACTAGTGTGTTTTA+CGG + chr4_3:59892088-59892107 Msa0652180:intron 25.0%
! TCAACTAACTTTACTTCAAT+GGG - chr4_3:59892455-59892474 None:intergenic 25.0%
! TTCAACTAACTTTACTTCAA+TGG - chr4_3:59892456-59892475 None:intergenic 25.0%
! AAAGAAAATAAAGAAGGGTA+TGG - chr4_3:59892506-59892525 None:intergenic 25.0%
! GAGAGAAAGAAAATAAAGAA+GGG - chr4_3:59892511-59892530 None:intergenic 25.0%
! TGAGAGAAAGAAAATAAAGA+AGG - chr4_3:59892512-59892531 None:intergenic 25.0%
!! AATTATTGGTCTAGAAACAA+AGG - chr4_3:59893182-59893201 None:intergenic 25.0%
!!! TTTCTTGTTTTGCATAAAGA+AGG + chr4_3:59893327-59893346 Msa0652180:intron 25.0%
!! TAAAGAAGGTTCTTTTCTTA+AGG + chr4_3:59893341-59893360 Msa0652180:intron 25.0%
!!! AGCATCTCTATTTTATTTTC+AGG - chr4_3:59893446-59893465 None:intergenic 25.0%
! ATTAAGCATTTCACATTTCT+TGG - chr4_3:59893841-59893860 None:intergenic 25.0%
! ATATGTGTCATATCCTTAAA+TGG - chr4_3:59893941-59893960 None:intergenic 25.0%
!! GAAATATTGCAAAAGGTTTT+AGG + chr4_3:59894316-59894335 Msa0652180:intron 25.0%
! AAGTATGATGTAAGAATGAT+GGG - chr4_3:59894360-59894379 None:intergenic 25.0%
! AACTGAAACAAGTTCAAATT+CGG - chr4_3:59894527-59894546 None:intergenic 25.0%
!!! AATAGAATTTAGCCTTTTTG+AGG + chr4_3:59895040-59895059 Msa0652180:intron 25.0%
! CTTAATACTTATCTTAGATG+AGG - chr4_3:59895168-59895187 None:intergenic 25.0%
! TTTGTTTCGATTAAAATAGG+TGG - chr4_3:59895948-59895967 None:intergenic 25.0%
! TAGCATATTCATTAATGATG+TGG + chr4_3:59896069-59896088 Msa0652180:intron 25.0%
! AATCACACAAATCTTGTAAA+AGG - chr4_3:59896905-59896924 None:intergenic 25.0%
!!! TTATTTGTCTAATGTTTTGG+TGG + chr4_3:59896949-59896968 Msa0652180:three_prime_UTR 25.0%
TATACATACACCAAATGGTA+TGG + chr4_3:59889764-59889783 Msa0652180:intron 30.0%
CAACAATTGTTGGAATGAAA+AGG - chr4_3:59889853-59889872 None:intergenic 30.0%
GACTTGAATTCAACAATTGT+TGG - chr4_3:59889863-59889882 None:intergenic 30.0%
CAATGTCTGTTGAATTAACA+AGG - chr4_3:59889906-59889925 None:intergenic 30.0%
GTTAATTCAACAGACATTGA+AGG + chr4_3:59889907-59889926 Msa0652180:intron 30.0%
TACACTACTACAGTATTAGT+AGG - chr4_3:59890121-59890140 None:intergenic 30.0%
ATGAATAACTAGCGAAAAGA+CGG - chr4_3:59890641-59890660 None:intergenic 30.0%
ATTCATGAGACAGATATGAA+GGG - chr4_3:59890707-59890726 None:intergenic 30.0%
TATTCATGAGACAGATATGA+AGG - chr4_3:59890708-59890727 None:intergenic 30.0%
ATGTAAAAGTGACACGTTAA+TGG - chr4_3:59890942-59890961 None:intergenic 30.0%
!! TGATATTTGGTAACGAAGTT+TGG - chr4_3:59891329-59891348 None:intergenic 30.0%
AAGTCTTGGTTACTTGAAAT+AGG + chr4_3:59891741-59891760 Msa0652180:intron 30.0%
! AAATAAAGAAGGGTATGGTA+TGG - chr4_3:59892501-59892520 None:intergenic 30.0%
AAACTCCATAAAAAGGTGAA+AGG + chr4_3:59892597-59892616 Msa0652180:intron 30.0%
GAAAAGTAACAACAAACCAA+AGG + chr4_3:59892632-59892651 Msa0652180:intron 30.0%
TAACAACAAACCAAAGGAAT+TGG + chr4_3:59892638-59892657 Msa0652180:intron 30.0%
! TTCTAAGAATCCAATTCCTT+TGG - chr4_3:59892651-59892670 None:intergenic 30.0%
!!! AGAGAGAGTTTCTTCTTTTT+TGG + chr4_3:59892763-59892782 Msa0652180:intron 30.0%
TGTTATGAATCATGTTGTGT+TGG + chr4_3:59892954-59892973 Msa0652180:intron 30.0%
! AACAATAACTGACTTTACCT+CGG + chr4_3:59893029-59893048 Msa0652180:intron 30.0%
TGATACATAAATCTTCTGAC+AGG - chr4_3:59893081-59893100 None:intergenic 30.0%
TTATGAACATGTGAAAGAGA+AGG - chr4_3:59893137-59893156 None:intergenic 30.0%
TTGTTTAGACAACCAATCTA+AGG - chr4_3:59893274-59893293 None:intergenic 30.0%
AGGATATACAACAATCAACA+TGG - chr4_3:59893548-59893567 None:intergenic 30.0%
TGAATTCCTCATATATTTGG+TGG + chr4_3:59893606-59893625 Msa0652180:intron 30.0%
TTAAACTTACAGGAAGAAAC+AGG + chr4_3:59893702-59893721 Msa0652180:intron 30.0%
!! TTGGTTTTCAGCAATCAAAA+GGG + chr4_3:59893754-59893773 Msa0652180:CDS 30.0%
GTTGTGGTTCTTCTTATAAT+TGG + chr4_3:59893882-59893901 Msa0652180:intron 30.0%
! CCTTAAATGGTTAACCATTT+TGG - chr4_3:59893928-59893947 None:intergenic 30.0%
CCAAAATGGTTAACCATTTA+AGG + chr4_3:59893925-59893944 Msa0652180:intron 30.0%
TGGAATGTTCATAACTCATA+AGG - chr4_3:59894176-59894195 None:intergenic 30.0%
!! AATCAACCGGAATTTTGATA+CGG - chr4_3:59894208-59894227 None:intergenic 30.0%
!! TGGCCTTTTAATTCATATCA+AGG + chr4_3:59894227-59894246 Msa0652180:intron 30.0%
CAAGTATGATGTAAGAATGA+TGG - chr4_3:59894361-59894380 None:intergenic 30.0%
AAACAAAGTTCAGACAAAAG+AGG - chr4_3:59894412-59894431 None:intergenic 30.0%
!! TTTTGTCTGAACTTTGTTTC+TGG + chr4_3:59894413-59894432 Msa0652180:intron 30.0%
! TCTTCATTTTACTACGAATC+CGG + chr4_3:59894458-59894477 Msa0652180:intron 30.0%
AGAACTTAATGCAACTTCAA+AGG - chr4_3:59894500-59894519 None:intergenic 30.0%
ATCATGCTTATTAACATAGC+AGG + chr4_3:59894572-59894591 Msa0652180:intron 30.0%
AACAACAAGTACTTGCAATT+AGG + chr4_3:59894727-59894746 Msa0652180:CDS 30.0%
GTTCTCCTTACAAACATATT+CGG + chr4_3:59895064-59895083 Msa0652180:intron 30.0%
TTCTCCTTACAAACATATTC+GGG + chr4_3:59895065-59895084 Msa0652180:intron 30.0%
AATTCCCGAATATGTTTGTA+AGG - chr4_3:59895072-59895091 None:intergenic 30.0%
! GGTAAAATTAATGGATCAAG+CGG - chr4_3:59895217-59895236 None:intergenic 30.0%
CAAATGATCGATAAAAAAGC+TGG - chr4_3:59895238-59895257 None:intergenic 30.0%
!!! CAGCTTTTTTATCGATCATT+TGG + chr4_3:59895236-59895255 Msa0652180:intron 30.0%
! GGTAAAATTAATGGATCAAG+CGG - chr4_3:59895217-59895236 None:intergenic 30.0%
TTCATGATCGATAAAAAAGC+TGG - chr4_3:59895289-59895308 None:intergenic 30.0%
AGTATCCTAACTCTTATATG+TGG + chr4_3:59895314-59895333 Msa0652180:intron 30.0%
AAGTACCACATATAAGAGTT+AGG - chr4_3:59895322-59895341 None:intergenic 30.0%
ATGTGGTACTTGCAATATAT+AGG + chr4_3:59895331-59895350 Msa0652180:intron 30.0%
! TGGAATTTTTGTAAAGTCTG+AGG + chr4_3:59895732-59895751 Msa0652180:intron 30.0%
AAATTAGCTAAACTGGATTG+TGG - chr4_3:59896040-59896059 None:intergenic 30.0%
GTTGACTATGTTAACAGTTA+TGG + chr4_3:59896147-59896166 Msa0652180:intron 30.0%
ACTATGTTAACAGTTATGGA+AGG + chr4_3:59896151-59896170 Msa0652180:intron 30.0%
!!! ATAGTCGATCTTGTTGATTT+TGG - chr4_3:59896407-59896426 None:intergenic 30.0%
AGTAATCCAAGAGAAAGATT+TGG + chr4_3:59896647-59896666 Msa0652180:CDS 30.0%
! GTCAATGTTCTCTAGAAATA+AGG + chr4_3:59896772-59896791 Msa0652180:CDS 30.0%
TCTAGAAATAAGGATTCTCA+TGG + chr4_3:59896782-59896801 Msa0652180:CDS 30.0%
! TATGATTGAGAGTGTATTAG+TGG + chr4_3:59897002-59897021 Msa0652180:three_prime_UTR 30.0%
ATACCATACTCCATACCATT+TGG - chr4_3:59889777-59889796 None:intergenic 35.0%
TGTCTGTTGAATTAACAAGG+TGG - chr4_3:59889903-59889922 None:intergenic 35.0%
! GGTTTGTTCAATTCAAGCAA+TGG - chr4_3:59890100-59890119 None:intergenic 35.0%
ACATCTTCATCTCTTATGGT+TGG + chr4_3:59890319-59890338 Msa0652180:intron 35.0%
! AGGGAAGAACAGGATTTTTA+TGG - chr4_3:59890684-59890703 None:intergenic 35.0%
! TGTGGAAAATTATGGTTCTG+GGG - chr4_3:59890829-59890848 None:intergenic 35.0%
GTGTGGAAAATTATGGTTCT+GGG - chr4_3:59890830-59890849 None:intergenic 35.0%
AAGCAACGTGTGGAAAATTA+TGG - chr4_3:59890837-59890856 None:intergenic 35.0%
!! AATTTTCCACACGTTGCTTT+TGG + chr4_3:59890838-59890857 Msa0652180:intron 35.0%
CAAAAACTAAGAGACAAGCA+GGG - chr4_3:59890906-59890925 None:intergenic 35.0%
TCAAAAACTAAGAGACAAGC+AGG - chr4_3:59890907-59890926 None:intergenic 35.0%
AGTGACACGTTAATGGTTTA+GGG - chr4_3:59890935-59890954 None:intergenic 35.0%
AAGTGACACGTTAATGGTTT+AGG - chr4_3:59890936-59890955 None:intergenic 35.0%
!! GTTAAAGAGGTGTTGATAAG+AGG + chr4_3:59891537-59891556 Msa0652180:intron 35.0%
AGTAACCAAGACTTCTAATG+CGG - chr4_3:59891735-59891754 None:intergenic 35.0%
AACGGATAATGCTAATGCAT+TGG - chr4_3:59891827-59891846 None:intergenic 35.0%
! TGTTTTACACCACACTCTAA+AGG + chr4_3:59892136-59892155 Msa0652180:intron 35.0%
TTGAACATTGAGTGAGAAAG+TGG + chr4_3:59892471-59892490 Msa0652180:intron 35.0%
! AGCAACCTTTCACCTTTTTA+TGG - chr4_3:59892605-59892624 None:intergenic 35.0%
!! AGAGAGAGAGAAGTATTATG+TGG + chr4_3:59892677-59892696 Msa0652180:intron 35.0%
!! GACAGTACTTTTTGCAACTT+TGG + chr4_3:59892803-59892822 Msa0652180:intron 35.0%
! ACAATAACTGACTTTACCTC+GGG + chr4_3:59893030-59893049 Msa0652180:intron 35.0%
ATTGAATTAAAAGGATCCCG+AGG - chr4_3:59893049-59893068 None:intergenic 35.0%
ACATAAATCTTCTGACAGGT+TGG - chr4_3:59893077-59893096 None:intergenic 35.0%
! TTCCTCATATATTTGGTGGT+AGG + chr4_3:59893610-59893629 Msa0652180:intron 35.0%
!!! GTTGGTTTTCAGCAATCAAA+AGG + chr4_3:59893753-59893772 Msa0652180:CDS 35.0%
! GTTTTTACACACCACTCTAA+GGG + chr4_3:59893776-59893795 Msa0652180:CDS 35.0%
! TTTTTACACACCACTCTAAG+GGG + chr4_3:59893777-59893796 Msa0652180:CDS 35.0%
TTGGAACAGACATTGTAAGA+AGG - chr4_3:59893822-59893841 None:intergenic 35.0%
TATGGCATTAGATGCCAAAA+TGG + chr4_3:59893911-59893930 Msa0652180:intron 35.0%
GATTCAAACCATGTTCTTGA+GGG - chr4_3:59893964-59893983 None:intergenic 35.0%
AGATTCAAACCATGTTCTTG+AGG - chr4_3:59893965-59893984 None:intergenic 35.0%
AAAATCTCAGCTCAGAAAAC+AGG - chr4_3:59894031-59894050 None:intergenic 35.0%
TGTAGCCAATTTGATGAGAA+TGG + chr4_3:59894109-59894128 Msa0652180:intron 35.0%
ACAGTCCATTCTCATCAAAT+TGG - chr4_3:59894117-59894136 None:intergenic 35.0%
!! TTGATGAGAATGGACTGTAA+TGG + chr4_3:59894119-59894138 Msa0652180:intron 35.0%
! TTTTGATACGGTAGAAGCTT+TGG - chr4_3:59894196-59894215 None:intergenic 35.0%
CTTCTACCGTATCAAAATTC+CGG + chr4_3:59894199-59894218 Msa0652180:intron 35.0%
GTATCAAAATTCCGGTTGAT+TGG + chr4_3:59894207-59894226 Msa0652180:intron 35.0%
GAATTAAAAGGCCAATCAAC+CGG - chr4_3:59894221-59894240 None:intergenic 35.0%
CAACTTCAAAGGCAGAATTA+TGG - chr4_3:59894489-59894508 None:intergenic 35.0%
AGCACAAAAGAGAAGAAGAA+AGG + chr4_3:59894609-59894628 Msa0652180:CDS 35.0%
! AAAGAGAAGAAGAAAGGTGT+AGG + chr4_3:59894615-59894634 Msa0652180:CDS 35.0%
!!! AAGAGTTTTAGAGCTCTGAA+AGG + chr4_3:59895359-59895378 Msa0652180:CDS 35.0%
!!! TTTTAGAGCTCTGAAAGGTT+TGG + chr4_3:59895364-59895383 Msa0652180:CDS 35.0%
AATCCAGATGTTAGAAAACC+AGG + chr4_3:59895496-59895515 Msa0652180:CDS 35.0%
!! ATTTTTGTAAAGTCTGAGGC+AGG + chr4_3:59895736-59895755 Msa0652180:intron 35.0%
TGATAGCTTACTGACAAAAG+AGG + chr4_3:59895777-59895796 Msa0652180:CDS 35.0%
CATCAAAAGAGAGAGATCAA+TGG + chr4_3:59895837-59895856 Msa0652180:intron 35.0%
ATAAAAAGTCTAGGCTGTGT+TGG - chr4_3:59895890-59895909 None:intergenic 35.0%
! TCTCCTTGTTTCACAAGTTT+CGG + chr4_3:59896005-59896024 Msa0652180:intron 35.0%
ATCAAACCCACAAGAAAAAC+AGG + chr4_3:59896265-59896284 Msa0652180:CDS 35.0%
GTGTGAATTGGAAATTCTTC+AGG - chr4_3:59896292-59896311 None:intergenic 35.0%
! TTTTGTTCCGAATATGGTCT+TGG - chr4_3:59896317-59896336 None:intergenic 35.0%
! CTTGTCTTTTGTTCCGAATA+TGG - chr4_3:59896323-59896342 None:intergenic 35.0%
TCCATGTTATCAAAGGCAAA+AGG - chr4_3:59896374-59896393 None:intergenic 35.0%
TGGTGTATCCATGTTATCAA+AGG - chr4_3:59896381-59896400 None:intergenic 35.0%
!!! GATCTTGTTGATTTTGGAGT+TGG - chr4_3:59896401-59896420 None:intergenic 35.0%
!!! GTTCTAGATGGTTTTGAAGA+TGG - chr4_3:59896434-59896453 None:intergenic 35.0%
!! TTTCCTTGTGGAGTTCTAAA+TGG - chr4_3:59896461-59896480 None:intergenic 35.0%
TGTCAAAATATTCAAGGCCA+AGG + chr4_3:59896495-59896514 Msa0652180:CDS 35.0%
GTCAAAATATTCAAGGCCAA+GGG + chr4_3:59896496-59896515 Msa0652180:CDS 35.0%
TCAAAATATTCAAGGCCAAG+GGG + chr4_3:59896497-59896516 Msa0652180:CDS 35.0%
AGACTATCATCATCCTTCAA+CGG - chr4_3:59896551-59896570 None:intergenic 35.0%
AATCCAAGAGAAAGATTTGG+CGG + chr4_3:59896650-59896669 Msa0652180:CDS 35.0%
TTTCCTTTGTCACAAGGAAT+AGG + chr4_3:59896728-59896747 Msa0652180:CDS 35.0%
TTCCTTTGTCACAAGGAATA+GGG + chr4_3:59896729-59896748 Msa0652180:CDS 35.0%
AAGGAATAGGGTCATTCAAA+TGG + chr4_3:59896741-59896760 Msa0652180:CDS 35.0%
GGTCATTCAAATGGAACAAA+GGG + chr4_3:59896750-59896769 Msa0652180:CDS 35.0%
TCAAGTGACTGGTATTTATC+TGG - chr4_3:59896821-59896840 None:intergenic 35.0%
TACCAGTCACTTGAATCTAT+TGG + chr4_3:59896827-59896846 Msa0652180:CDS 35.0%
TTCCAATAGATTCAAGTGAC+TGG - chr4_3:59896832-59896851 None:intergenic 35.0%
ATCTATTGGAAATGTGAGTG+TGG + chr4_3:59896841-59896860 Msa0652180:CDS 35.0%
ACACCAAATGGTATGGAGTA+TGG + chr4_3:59889771-59889790 Msa0652180:intron 40.0%
GGAGTATGGTATAGCATACT+TGG + chr4_3:59889785-59889804 Msa0652180:intron 40.0%
AGACTCCATTCGTGAAATGA+AGG - chr4_3:59889811-59889830 None:intergenic 40.0%
ATAAACCTGCATTGCTAGTG+TGG - chr4_3:59889996-59890015 None:intergenic 40.0%
TTAACTTATGCCTCTGCATG+TGG + chr4_3:59890018-59890037 Msa0652180:intron 40.0%
TAACTTATGCCTCTGCATGT+GGG + chr4_3:59890019-59890038 Msa0652180:intron 40.0%
GTTCAATTCAAGCAATGGCA+AGG - chr4_3:59890095-59890114 None:intergenic 40.0%
TGCGACATCTTCATCTCTTA+TGG + chr4_3:59890315-59890334 Msa0652180:intron 40.0%
CAGGTGTTAGACCATGTTAT+AGG + chr4_3:59890423-59890442 Msa0652180:intron 40.0%
GTGTTAGACCATGTTATAGG+AGG + chr4_3:59890426-59890445 Msa0652180:intron 40.0%
AGTTCTCACCTCCTATAACA+TGG - chr4_3:59890437-59890456 None:intergenic 40.0%
ATGAGACAGATATGAAGGGA+GGG - chr4_3:59890703-59890722 None:intergenic 40.0%
TGCGTCTGCATCGTATTATA+AGG - chr4_3:59890789-59890808 None:intergenic 40.0%
CGTGTGGAAAATTATGGTTC+TGG - chr4_3:59890831-59890850 None:intergenic 40.0%
AAGAATCCAAAAGCAACGTG+TGG - chr4_3:59890847-59890866 None:intergenic 40.0%
CAAATTTATGTCTACGCCAC+TGG - chr4_3:59891090-59891109 None:intergenic 40.0%
TGATCACACTTGCTCTTGAT+CGG - chr4_3:59891458-59891477 None:intergenic 40.0%
AGGTGTCTCACACATGTTTA+AGG + chr4_3:59891557-59891576 Msa0652180:intron 40.0%
! CTAATGCATTGGCACATCTT+AGG - chr4_3:59891816-59891835 None:intergenic 40.0%
! TTTTATGTGTGATGACCGTG+TGG - chr4_3:59892200-59892219 None:intergenic 40.0%
!! TCTCATGTTCTAGCTCTAAG+TGG + chr4_3:59892272-59892291 Msa0652180:intron 40.0%
ACTTCAATGGGAAGACTATG+TGG - chr4_3:59892443-59892462 None:intergenic 40.0%
! AAAGAAGGGTATGGTATGGT+TGG - chr4_3:59892497-59892516 None:intergenic 40.0%
!! AGAGAAGTATTATGTGGTGC+TGG + chr4_3:59892683-59892702 Msa0652180:intron 40.0%
AAGCTCTGTGACAACTAACA+AGG + chr4_3:59892826-59892845 Msa0652180:CDS 40.0%
! TGAATCATGTTGTGTTGGCA+TGG + chr4_3:59892959-59892978 Msa0652180:intron 40.0%
!! CATGTGATGGATCCTTAGAT+TGG + chr4_3:59893259-59893278 Msa0652180:intron 40.0%
CACCTACCACCAAATATATG+AGG - chr4_3:59893615-59893634 None:intergenic 40.0%
AAACAGGAATGCTACTGAGA+TGG + chr4_3:59893718-59893737 Msa0652180:CDS 40.0%
AACAGGAATGCTACTGAGAT+GGG + chr4_3:59893719-59893738 Msa0652180:CDS 40.0%
! GGTTTTTACACACCACTCTA+AGG + chr4_3:59893775-59893794 Msa0652180:CDS 40.0%
AAATTACCTTCCCCTTAGAG+TGG - chr4_3:59893790-59893809 None:intergenic 40.0%
TTTGTACGTTGTTCTCGTTG+TGG + chr4_3:59893866-59893885 Msa0652180:intron 40.0%
ACACATATCCCTCAAGAACA+TGG + chr4_3:59893953-59893972 Msa0652180:intron 40.0%
!! GACTGTAATGGATAGACCTT+TGG + chr4_3:59894131-59894150 Msa0652180:intron 40.0%
AGGCAGAATTATGGAAACAC+CGG - chr4_3:59894480-59894499 None:intergenic 40.0%
GGTGTAGGAAAACTAAAGCA+TGG + chr4_3:59894630-59894649 Msa0652180:CDS 40.0%
GAATGTTCATCAACACAAGG+AGG + chr4_3:59894905-59894924 Msa0652180:CDS 40.0%
! TGGTTCTGTAAAGTTGGTTC+TGG - chr4_3:59894942-59894961 None:intergenic 40.0%
!! ACATGCTGGTTCTGTAAAGT+TGG - chr4_3:59894948-59894967 None:intergenic 40.0%
TTTACAGAACCAGCATGTCT+CGG + chr4_3:59894950-59894969 Msa0652180:CDS 40.0%
GTAAGGAGAACACCTCAAAA+AGG - chr4_3:59895055-59895074 None:intergenic 40.0%
GTACTTGCAATATATAGGCC+AGG + chr4_3:59895336-59895355 Msa0652180:intron 40.0%
! AAAGGTTTGGTAAGGCTTCA+AGG + chr4_3:59895377-59895396 Msa0652180:CDS 40.0%
TAAGAGGACAGAATGTGAAG+AGG + chr4_3:59895405-59895424 Msa0652180:CDS 40.0%
TAACAGCTGCATGTGTTTCA+TGG - chr4_3:59895444-59895463 None:intergenic 40.0%
TCCAGCTTCATTCTTGTACT+CGG - chr4_3:59895534-59895553 None:intergenic 40.0%
!! AATGAAGCTGGAAGTACCTT+GGG + chr4_3:59895542-59895561 Msa0652180:CDS 40.0%
AGGCAGGTAACAATGAAGAT+TGG + chr4_3:59895752-59895771 Msa0652180:CDS 40.0%
GGCAGGTAACAATGAAGATT+GGG + chr4_3:59895753-59895772 Msa0652180:CDS 40.0%
GGCATTTGCATATTCACATC+AGG + chr4_3:59895858-59895877 Msa0652180:intron 40.0%
! CTCCTTGTTTCACAAGTTTC+GGG + chr4_3:59896006-59896025 Msa0652180:intron 40.0%
TTCCCGAAACTTGTGAAACA+AGG - chr4_3:59896011-59896030 None:intergenic 40.0%
!!! CGTTTGAGTTGATTTTGGAG+TGG - chr4_3:59896177-59896196 None:intergenic 40.0%
!!! ACAGGCGTTTGAGTTGATTT+TGG - chr4_3:59896182-59896201 None:intergenic 40.0%
! TTTTCTTGTGGGTTTGATGC+AGG - chr4_3:59896263-59896282 None:intergenic 40.0%
!! TCAGGACCTGTTTTTCTTGT+GGG - chr4_3:59896274-59896293 None:intergenic 40.0%
!! TTCAGGACCTGTTTTTCTTG+TGG - chr4_3:59896275-59896294 None:intergenic 40.0%
!! GCCTTTTGCCTTTGATAACA+TGG + chr4_3:59896370-59896389 Msa0652180:CDS 40.0%
!! CTAAATGGAGGAGTTCTAGA+TGG - chr4_3:59896446-59896465 None:intergenic 40.0%
GCGCGATGTCAAAATATTCA+AGG + chr4_3:59896489-59896508 Msa0652180:CDS 40.0%
! ATGTAGTTTGGAACGGAGAA+CGG - chr4_3:59896587-59896606 None:intergenic 40.0%
ATTACTACTAGCGCGTACTT+TGG - chr4_3:59896633-59896652 None:intergenic 40.0%
GTCTCATTTCCTTTGTCACA+AGG + chr4_3:59896722-59896741 Msa0652180:CDS 40.0%
GGGTCATTCAAATGGAACAA+AGG + chr4_3:59896749-59896768 Msa0652180:CDS 40.0%
! CTTGGCCTTCATTTCACGAA+TGG + chr4_3:59889803-59889822 Msa0652180:intron 45.0%
! GTCTGTGATTTGTCACGTGT+TGG + chr4_3:59889827-59889846 Msa0652180:intron 45.0%
TCAACAGACATTGAAGGTCC+CGG + chr4_3:59889913-59889932 Msa0652180:intron 45.0%
AACTTATGCCTCTGCATGTG+GGG + chr4_3:59890020-59890039 Msa0652180:intron 45.0%
ATAGTATACCCCACATGCAG+AGG - chr4_3:59890031-59890050 None:intergenic 45.0%
CTGCATGTGGGGTATACTAT+AGG + chr4_3:59890031-59890050 Msa0652180:intron 45.0%
GGCAAGGACACAAATTGCAT+GGG - chr4_3:59890079-59890098 None:intergenic 45.0%
TGGCAAGGACACAAATTGCA+TGG - chr4_3:59890080-59890099 None:intergenic 45.0%
AGGGCTATGATACCACTTCT+TGG - chr4_3:59890390-59890409 None:intergenic 45.0%
AGGAGGTGAGAACTAACACT+TGG + chr4_3:59890443-59890462 Msa0652180:intron 45.0%
ATATGAAGGGAGGGAAGAAC+AGG - chr4_3:59890694-59890713 None:intergenic 45.0%
CATGAGACAGATATGAAGGG+AGG - chr4_3:59890704-59890723 None:intergenic 45.0%
GACGCACCATTTACATCATG+TGG + chr4_3:59890803-59890822 Msa0652180:intron 45.0%
ATCAGCCGCATTAGAAGTCT+TGG + chr4_3:59891727-59891746 Msa0652180:intron 45.0%
TAAAACACGCGCTCATGAAG+TGG - chr4_3:59892123-59892142 None:intergenic 45.0%
! ATGTGGTGCTGGAAAGAAGA+AGG + chr4_3:59892694-59892713 Msa0652180:intron 45.0%
TGCTACTGAGATGGGAAAGA+AGG + chr4_3:59893727-59893746 Msa0652180:CDS 45.0%
GCTACTGAGATGGGAAAGAA+GGG + chr4_3:59893728-59893747 Msa0652180:CDS 45.0%
CTACTGAGATGGGAAAGAAG+GGG + chr4_3:59893729-59893748 Msa0652180:CDS 45.0%
AACGAGACGCTCAATGTGAT+TGG - chr4_3:59894056-59894075 None:intergenic 45.0%
GAAGAGGGGGATGAAAGAAT+TGG - chr4_3:59894661-59894680 None:intergenic 45.0%
! TAGGAGAAGCAACTCTAGGA+GGG - chr4_3:59894794-59894813 None:intergenic 45.0%
GCGGAATGTTCATCAACACA+AGG + chr4_3:59894902-59894921 Msa0652180:CDS 45.0%
TATAACCTCTGTAAGCAGCC+TGG - chr4_3:59894986-59895005 None:intergenic 45.0%
GGCTGCTTACAGAGGTTATA+TGG + chr4_3:59894986-59895005 Msa0652180:CDS 45.0%
!! CAGAGCTCTAAAACTCTTCC+TGG - chr4_3:59895357-59895376 None:intergenic 45.0%
!! GAGCTCTGAAAGGTTTGGTA+AGG + chr4_3:59895369-59895388 Msa0652180:CDS 45.0%
TTTGGTAAGGCTTCAAGGAG+TGG + chr4_3:59895382-59895401 Msa0652180:CDS 45.0%
!! GTGCCTGGTTTTCTAACATC+TGG - chr4_3:59895502-59895521 None:intergenic 45.0%
!! GAATGAAGCTGGAAGTACCT+TGG + chr4_3:59895541-59895560 Msa0652180:CDS 45.0%
!! ATGAAGCTGGAAGTACCTTG+GGG + chr4_3:59895543-59895562 Msa0652180:CDS 45.0%
!! ACCTTGGGGAAAAGTGCTTT+AGG + chr4_3:59895557-59895576 Msa0652180:CDS 45.0%
!! TCCTAAAGCACTTTTCCCCA+AGG - chr4_3:59895561-59895580 None:intergenic 45.0%
!! GGGAAAAGTGCTTTAGGACA+TGG + chr4_3:59895563-59895582 Msa0652180:CDS 45.0%
CAAAAGAGGAAGTAGAAGCG+AGG + chr4_3:59895791-59895810 Msa0652180:CDS 45.0%
! AAAGTCTAGGCTGTGTTGGT+GGG - chr4_3:59895886-59895905 None:intergenic 45.0%
AAAAGTCTAGGCTGTGTTGG+TGG - chr4_3:59895887-59895906 None:intergenic 45.0%
!! ATGGTCTTGGTGGTGTGAAT+TGG - chr4_3:59896304-59896323 None:intergenic 45.0%
CACACCACCAAGACCATATT+CGG + chr4_3:59896307-59896326 Msa0652180:CDS 45.0%
! TGTTCCGAATATGGTCTTGG+TGG - chr4_3:59896314-59896333 None:intergenic 45.0%
CAAAAGACAAGTCCAAGACC+TGG + chr4_3:59896332-59896351 Msa0652180:CDS 45.0%
!! CCTTGTGGAGTTCTAAATGG+AGG - chr4_3:59896458-59896477 None:intergenic 45.0%
! CCTCCATTTAGAACTCCACA+AGG + chr4_3:59896455-59896474 Msa0652180:CDS 45.0%
CGGTACATCGAAAGGTGAAT+TGG - chr4_3:59896531-59896550 None:intergenic 45.0%
ACCTTTCGATGTACCGTTGA+AGG + chr4_3:59896535-59896554 Msa0652180:CDS 45.0%
TCCTTCAACGGTACATCGAA+AGG - chr4_3:59896539-59896558 None:intergenic 45.0%
GTTCTCCGTTCCAAACTACA+TGG + chr4_3:59896586-59896605 Msa0652180:CDS 45.0%
TGGAGCCATGTAGTTTGGAA+CGG - chr4_3:59896594-59896613 None:intergenic 45.0%
ACAGTTGGAGCCATGTAGTT+TGG - chr4_3:59896599-59896618 None:intergenic 45.0%
CTCTTGGAATCAGTGCTTGT+TGG - chr4_3:59896698-59896717 None:intergenic 45.0%
!! CAACAAGCACTGATTCCAAG+AGG + chr4_3:59896696-59896715 Msa0652180:CDS 45.0%
AGGAAATGAGACTCTCCTCT+TGG - chr4_3:59896714-59896733 None:intergenic 45.0%
GACCCTATTCCTTGTGACAA+AGG - chr4_3:59896734-59896753 None:intergenic 45.0%
!!! TGTTTTTTTAATTATTATTA+TGG + chr4_3:59892928-59892947 Msa0652180:intron 5.0%
!!! TTATTTATTCAATTAATTTT+TGG + chr4_3:59893410-59893429 Msa0652180:intron 5.0%
!!! TATAAAAAATAAAAGTATTT+AGG + chr4_3:59895108-59895127 Msa0652180:intron 5.0%
!! AAAAAAAAAAAAAACATAAT+AGG + chr4_3:59897067-59897086 Msa0652180:three_prime_UTR 5.0%
GTTCATGTCTGTTGCTGCAC+AGG - chr4_3:59889946-59889965 None:intergenic 50.0%
GCAGCAACAGACATGAACTG+TGG + chr4_3:59889948-59889967 Msa0652180:intron 50.0%
TCATGCCACACTAGCAATGC+AGG + chr4_3:59889988-59890007 Msa0652180:intron 50.0%
AGAGAGCAAGGGAGCAACAA+CGG - chr4_3:59890359-59890378 None:intergenic 50.0%
TGGAGAGTCTGAGAGAGCAA+GGG - chr4_3:59890370-59890389 None:intergenic 50.0%
TTGGAGAGTCTGAGAGAGCA+AGG - chr4_3:59890371-59890390 None:intergenic 50.0%
CTCTCAGACTCTCCAAGAAG+TGG + chr4_3:59890375-59890394 Msa0652180:intron 50.0%
TGGTATCATAGCCCTGCTTG+TGG + chr4_3:59890395-59890414 Msa0652180:intron 50.0%
TATCATAGCCCTGCTTGTGG+TGG + chr4_3:59890398-59890417 Msa0652180:intron 50.0%
CTGGGGCCACATGATGTAAA+TGG - chr4_3:59890812-59890831 None:intergenic 50.0%
! TTTTCGTTTGAGCGCAGGCA+GGG - chr4_3:59890877-59890896 None:intergenic 50.0%
! ACCACACTCTAAAGGAGCGT+AGG + chr4_3:59892144-59892163 Msa0652180:intron 50.0%
CATGACCAAGTCATGCCACA+CGG + chr4_3:59892182-59892201 Msa0652180:intron 50.0%
! TGGTGCTGGAAAGAAGAAGG+AGG + chr4_3:59892697-59892716 Msa0652180:intron 50.0%
AAGCTCACCAGAACGAACGA+CGG - chr4_3:59893478-59893497 None:intergenic 50.0%
AGATGGGAAAGAAGGGGAGT+TGG + chr4_3:59893735-59893754 Msa0652180:CDS 50.0%
! TACACACCACTCTAAGGGGA+AGG + chr4_3:59893781-59893800 Msa0652180:CDS 50.0%
! TGCTTGGTTCTCTGAAGAGG+GGG - chr4_3:59894674-59894693 None:intergenic 50.0%
! CTGCTTGGTTCTCTGAAGAG+GGG - chr4_3:59894675-59894694 None:intergenic 50.0%
! GCTGCTTGGTTCTCTGAAGA+GGG - chr4_3:59894676-59894695 None:intergenic 50.0%
! TGCTGCTTGGTTCTCTGAAG+AGG - chr4_3:59894677-59894696 None:intergenic 50.0%
CTAGGAGAAGCAACTCTAGG+AGG - chr4_3:59894795-59894814 None:intergenic 50.0%
CTCCTAGAGTTGCTTCTCCT+AGG + chr4_3:59894793-59894812 Msa0652180:CDS 50.0%
TCCTAAGCCTCCTTCTCCAA+GGG + chr4_3:59894824-59894843 Msa0652180:CDS 50.0%
TCCAAGGGATCCATCTCCAA+GGG + chr4_3:59894839-59894858 Msa0652180:CDS 50.0%
AAGATCCAGGCTGCTTACAG+AGG + chr4_3:59894978-59894997 Msa0652180:CDS 50.0%
AGGCTTCAAGGAGTGGTAAG+AGG + chr4_3:59895389-59895408 Msa0652180:CDS 50.0%
GCCGAGTACAAGAATGAAGC+TGG + chr4_3:59895530-59895549 Msa0652180:CDS 50.0%
AAGTAGAAGCGAGGTTGCAG+AGG + chr4_3:59895800-59895819 Msa0652180:CDS 50.0%
! GCGCTTGAAGTGTTTCCTTG+TGG - chr4_3:59896473-59896492 None:intergenic 50.0%
TATTCAAGGCCAAGGGGAGT+AGG + chr4_3:59896503-59896522 Msa0652180:CDS 50.0%
GAATTGGATCCTACTCCCCT+TGG - chr4_3:59896515-59896534 None:intergenic 50.0%
! TAGTTTGGAACGGAGAACGG+TGG - chr4_3:59896584-59896603 None:intergenic 50.0%
!! TTGGCCTTGGCAGAAACAGT+TGG - chr4_3:59896614-59896633 None:intergenic 50.0%
CCACCGCCAAATCTTTCTCT+TGG - chr4_3:59896656-59896675 None:intergenic 50.0%
CCAAGAGAAAGATTTGGCGG+TGG + chr4_3:59896653-59896672 Msa0652180:CDS 50.0%
AGATTTGGCGGTGGTAGTAG+TGG + chr4_3:59896662-59896681 Msa0652180:CDS 50.0%
AGGATTCTCATGGCTCTCAC+AGG + chr4_3:59896792-59896811 Msa0652180:CDS 50.0%
AGCAGTATCCTTGCCTGCAA+GGG + chr4_3:59896868-59896887 Msa0652180:CDS 50.0%
TCTTTCAACCCTTGCAGGCA+AGG - chr4_3:59896879-59896898 None:intergenic 50.0%
GGCTTTCTTTCAACCCTTGC+AGG - chr4_3:59896884-59896903 None:intergenic 50.0%
TTGCTGCACAGGACAGAAGC+CGG - chr4_3:59889935-59889954 None:intergenic 55.0%
GAGAGCAAGGGAGCAACAAC+GGG - chr4_3:59890358-59890377 None:intergenic 55.0%
! GTTTTCGTTTGAGCGCAGGC+AGG - chr4_3:59890878-59890897 None:intergenic 55.0%
! CCTCGTTTTCGTTTGAGCGC+AGG - chr4_3:59890882-59890901 None:intergenic 55.0%
CCTGCGCTCAAACGAAAACG+AGG + chr4_3:59890879-59890898 Msa0652180:intron 55.0%
! AACAAACCCGTGCTGACGCA+CGG - chr4_3:59892074-59892093 None:intergenic 55.0%
!! GCCTACGCTCCTTTAGAGTG+TGG - chr4_3:59892148-59892167 None:intergenic 55.0%
GATGACCGTGTGGCATGACT+TGG - chr4_3:59892190-59892209 None:intergenic 55.0%
!!! AGGTGGCGTTTTTGGTCGCT+CGG - chr4_3:59894766-59894785 None:intergenic 55.0%
! GGGACGAAAGGTGGCGTTTT+TGG - chr4_3:59894774-59894793 None:intergenic 55.0%
! ACTCTAGGAGGGACGAAAGG+TGG - chr4_3:59894783-59894802 None:intergenic 55.0%
! GCAACTCTAGGAGGGACGAA+AGG - chr4_3:59894786-59894805 None:intergenic 55.0%
GGCCTAGGAGAAGCAACTCT+AGG - chr4_3:59894798-59894817 None:intergenic 55.0%
GAAGGAGGCTTAGGAGAAGG+AGG - chr4_3:59894819-59894838 None:intergenic 55.0%
GGAGAAGGAGGCTTAGGAGA+AGG - chr4_3:59894822-59894841 None:intergenic 55.0%
CTCCTAAGCCTCCTTCTCCA+AGG + chr4_3:59894823-59894842 Msa0652180:CDS 55.0%
TCCCTTGGAGAAGGAGGCTT+AGG - chr4_3:59894828-59894847 None:intergenic 55.0%
GATGGATCCCTTGGAGAAGG+AGG - chr4_3:59894834-59894853 None:intergenic 55.0%
GGAGATGGATCCCTTGGAGA+AGG - chr4_3:59894837-59894856 None:intergenic 55.0%
CTCCAAGGGATCCATCTCCA+AGG + chr4_3:59894838-59894857 Msa0652180:CDS 55.0%
AGAGGTAACTCGCGGAGAAG+CGG - chr4_3:59894865-59894884 None:intergenic 55.0%
GCTTTCGGAGAGGTAACTCG+CGG - chr4_3:59894873-59894892 None:intergenic 55.0%
GCGAGTTACCTCTCCGAAAG+CGG + chr4_3:59894872-59894891 Msa0652180:CDS 55.0%
!! TTCCGCGAAGATGCCGCTTT+CGG - chr4_3:59894888-59894907 None:intergenic 55.0%
TCTTAGTCGCCGAGACATGC+TGG - chr4_3:59894962-59894981 None:intergenic 55.0%
TGTCTCGGCGACTAAGATCC+AGG + chr4_3:59894965-59894984 Msa0652180:CDS 55.0%
! ACTCGGCTTGATATCGTGCC+TGG - chr4_3:59895517-59895536 None:intergenic 55.0%
AGAAGCGAGGTTGCAGAGGA+AGG + chr4_3:59895804-59895823 Msa0652180:CDS 55.0%
CTCGATCGCGTATCTGTCAC+AGG - chr4_3:59896200-59896219 None:intergenic 55.0%
GTGACAGATACGCGATCGAG+CGG + chr4_3:59896200-59896219 Msa0652180:CDS 55.0%
!! GATTCCCATGGTGGTGGAAC+TGG + chr4_3:59896222-59896241 Msa0652180:CDS 55.0%
CCAACCAGTTCCACCACCAT+GGG - chr4_3:59896229-59896248 None:intergenic 55.0%
TCCAACCAGTTCCACCACCA+TGG - chr4_3:59896230-59896249 None:intergenic 55.0%
TGAGAGCTTGAGCCAGGTCT+TGG - chr4_3:59896347-59896366 None:intergenic 55.0%
GACCTGGCTCAAGCTCTCAA+AGG + chr4_3:59896348-59896367 Msa0652180:CDS 55.0%
!! GGCTCCAACTGTTTCTGCCA+AGG + chr4_3:59896607-59896626 Msa0652180:CDS 55.0%
ACTAGCGCGTACTTTGGCCT+TGG - chr4_3:59896627-59896646 None:intergenic 55.0%
CAGCAGTATCCTTGCCTGCA+AGG + chr4_3:59896867-59896886 Msa0652180:CDS 55.0%
! GAGGTAGCGGCAGTGCATTG+AGG + chr4_3:59889705-59889724 Msa0652180:intron 60.0%
TGCTGCACAGGACAGAAGCC+GGG - chr4_3:59889934-59889953 None:intergenic 60.0%
CACCTGCTCCACCACAAGCA+GGG - chr4_3:59890409-59890428 None:intergenic 60.0%
ACACCTGCTCCACCACAAGC+AGG - chr4_3:59890410-59890429 None:intergenic 60.0%
ACTGTACCCGTGCGTCAGCA+CGG + chr4_3:59892064-59892083 Msa0652180:intron 60.0%
! ACAAACCCGTGCTGACGCAC+GGG - chr4_3:59892073-59892092 None:intergenic 60.0%
CAGAACGAACGACGGCAAGG+AGG - chr4_3:59893470-59893489 None:intergenic 60.0%
CTCCTTGCCGTCGTTCGTTC+TGG + chr4_3:59893468-59893487 Msa0652180:intron 60.0%
CACCAGAACGAACGACGGCA+AGG - chr4_3:59893473-59893492 None:intergenic 60.0%
! TTTGGTCGCTCGGGAGGTGT+GGG - chr4_3:59894756-59894775 None:intergenic 60.0%
! TTTTGGTCGCTCGGGAGGTG+TGG - chr4_3:59894757-59894776 None:intergenic 60.0%
!!! GGTGGCGTTTTTGGTCGCTC+GGG - chr4_3:59894765-59894784 None:intergenic 60.0%
GGCTTAGGAGAAGGAGGCCT+AGG - chr4_3:59894813-59894832 None:intergenic 60.0%
GCCCTTGGAGATGGATCCCT+TGG - chr4_3:59894843-59894862 None:intergenic 60.0%
!! CGAAGATGCCGCTTTCGGAG+AGG - chr4_3:59894883-59894902 None:intergenic 60.0%
CTCCGAAAGCGGCATCTTCG+CGG + chr4_3:59894883-59894902 Msa0652180:CDS 60.0%
! GATCGAGCGGATTCCCATGG+TGG + chr4_3:59896213-59896232 Msa0652180:CDS 60.0%
!! CCCATGGTGGTGGAACTGGT+TGG + chr4_3:59896226-59896245 Msa0652180:CDS 60.0%
! GGCCTTTGAGAGCTTGAGCC+AGG - chr4_3:59896353-59896372 None:intergenic 60.0%
! AGCCCTGCTTGTGGTGGAGC+AGG + chr4_3:59890404-59890423 Msa0652180:intron 65.0%
CTGTACCCGTGCGTCAGCAC+GGG + chr4_3:59892065-59892084 Msa0652180:intron 65.0%
!!! GGCGTTTTTGGTCGCTCGGG+AGG - chr4_3:59894762-59894781 None:intergenic 65.0%
GGAGAAGCGGCCCTTGGAGA+TGG - chr4_3:59894852-59894871 None:intergenic 65.0%
! CGCGATCGAGCGGATTCCCA+TGG + chr4_3:59896210-59896229 Msa0652180:CDS 65.0%
! CGAGCGGATTCCCATGGTGG+TGG + chr4_3:59896216-59896235 Msa0652180:CDS 65.0%
ACTCGCGGAGAAGCGGCCCT+TGG - chr4_3:59894858-59894877 None:intergenic 70.0%
! GGTCGCTCGGGAGGTGTGGG+AGG - chr4_3:59894753-59894772 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 59889703 59897151 59889703 ID=Msa0652180;Name=Msa0652180
chr4_3 mRNA 59889703 59897151 59889703 ID=Msa0652180-mRNA-1;Parent=Msa0652180;Name=Msa0652180-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.37|0.44|0.88|0.87|1|9|229|561
chr4_3 exon 59889703 59889707 59889703 ID=Msa0652180-mRNA-1:exon:16175;Parent=Msa0652180-mRNA-1
chr4_3 exon 59892436 59892465 59892436 ID=Msa0652180-mRNA-1:exon:16176;Parent=Msa0652180-mRNA-1
chr4_3 exon 59892808 59892847 59892808 ID=Msa0652180-mRNA-1:exon:16177;Parent=Msa0652180-mRNA-1
chr4_3 exon 59893192 59893228 59893192 ID=Msa0652180-mRNA-1:exon:16178;Parent=Msa0652180-mRNA-1
chr4_3 exon 59893714 59893802 59893714 ID=Msa0652180-mRNA-1:exon:16179;Parent=Msa0652180-mRNA-1
chr4_3 exon 59894594 59895007 59894594 ID=Msa0652180-mRNA-1:exon:16180;Parent=Msa0652180-mRNA-1
chr4_3 exon 59895353 59895586 59895353 ID=Msa0652180-mRNA-1:exon:16181;Parent=Msa0652180-mRNA-1
chr4_3 exon 59895748 59895825 59895748 ID=Msa0652180-mRNA-1:exon:16182;Parent=Msa0652180-mRNA-1
chr4_3 exon 59896164 59897151 59896164 ID=Msa0652180-mRNA-1:exon:16183;Parent=Msa0652180-mRNA-1
chr4_3 CDS 59889703 59889707 59889703 ID=Msa0652180-mRNA-1:cds;Parent=Msa0652180-mRNA-1
chr4_3 CDS 59892436 59892465 59892436 ID=Msa0652180-mRNA-1:cds;Parent=Msa0652180-mRNA-1
chr4_3 CDS 59892808 59892847 59892808 ID=Msa0652180-mRNA-1:cds;Parent=Msa0652180-mRNA-1
chr4_3 CDS 59893192 59893228 59893192 ID=Msa0652180-mRNA-1:cds;Parent=Msa0652180-mRNA-1
chr4_3 CDS 59893714 59893802 59893714 ID=Msa0652180-mRNA-1:cds;Parent=Msa0652180-mRNA-1
chr4_3 CDS 59894594 59895007 59894594 ID=Msa0652180-mRNA-1:cds;Parent=Msa0652180-mRNA-1
chr4_3 CDS 59895353 59895586 59895353 ID=Msa0652180-mRNA-1:cds;Parent=Msa0652180-mRNA-1
chr4_3 CDS 59895748 59895825 59895748 ID=Msa0652180-mRNA-1:cds;Parent=Msa0652180-mRNA-1
chr4_3 CDS 59896164 59896922 59896164 ID=Msa0652180-mRNA-1:cds;Parent=Msa0652180-mRNA-1
chr4_3 three_prime_UTR 59896923 59897151 59896923 ID=Msa0652180-mRNA-1:three_prime_utr;Parent=Msa0652180-mRNA-1
Gene Sequence

>Msa0652180

ATGAGGTGTCCACATAGTCTTCCCATTGAAGTAAATACTTTTTGCAACTTTGGAAGCTCTGTGACAACTAACAAGACCAATAATTCATCTTTCATTTTTCAATTCTTATCAGGAAGAAACAGGAATGCTACTGAGATGGGAAAGAAGGGGAGTTGGTTTTCAGCAATCAAAAGGGTTTTTACACACCACTCTAAGGGGAAGGATTCAGAAAACAAAAGCACAAAAGAGAAGAAGAAAGGTGTAGGAAAACTAAAGCATGGAGAGACCAATTCTTTCATCCCCCTCTTCAGAGAACCAAGCAGCATTGAGAAAATATTTGGGGACTTTGAAAGAGAACAACAAGTACTTGCAATTAGGCCTCCCACACCTCCCGAGCGACCAAAAACGCCACCTTTCGTCCCTCCTAGAGTTGCTTCTCCTAGGCCTCCTTCTCCTAAGCCTCCTTCTCCAAGGGATCCATCTCCAAGGGCCGCTTCTCCGCGAGTTACCTCTCCGAAAGCGGCATCTTCGCGGAATGTTCATCAACACAAGGAGGTTCGCAACAGACCAGAACCAACTTTACAGAACCAGCATGTCTCGGCGACTAAGATCCAGGCTGCTTACAGAGGTTATATGGCCAGGAAGAGTTTTAGAGCTCTGAAAGGTTTGGTAAGGCTTCAAGGAGTGGTAAGAGGACAGAATGTGAAGAGGCAGACAGTTAATGCCATGAAACACATGCAGCTGTTAGTGCGAGTTCAGTCTCAGATTCAATCTCGAAGAATCCAGATGTTAGAAAACCAGGCACGATATCAAGCCGAGTACAAGAATGAAGCTGGAAGTACCTTGGGGAAAAGTGCTTTAGGACATGGTTCTGAGGCAGGTAACAATGAAGATTGGGATGATAGCTTACTGACAAAAGAGGAAGTAGAAGCGAGGTTGCAGAGGAAGTTATGGAAGGCCACTCCAAAATCAACTCAAACGCCTGTGACAGATACGCGATCGAGCGGATTCCCATGGTGGTGGAACTGGTTGGAAAGACAATTACCTGCATCAAACCCACAAGAAAAACAGGTCCTGAAGAATTTCCAATTCACACCACCAAGACCATATTCGGAACAAAAGACAAGTCCAAGACCTGGCTCAAGCTCTCAAAGGCCTTTTGCCTTTGATAACATGGATACACCAACTCCAAAATCAACAAGATCGACTATATTTCCATCTTCAAAACCATCTAGAACTCCTCCATTTAGAACTCCACAAGGAAACACTTCAAGCGCGATGTCAAAATATTCAAGGCCAAGGGGAGTAGGATCCAATTCACCTTTCGATGTACCGTTGAAGGATGATGATAGTCTCACAAGCTGTCCACCGTTCTCCGTTCCAAACTACATGGCTCCAACTGTTTCTGCCAAGGCCAAAGTACGCGCTAGTAGTAATCCAAGAGAAAGATTTGGCGGTGGTAGTAGTGGCTGTGCAACTCCAACAAGCACTGATTCCAAGAGGAGAGTCTCATTTCCTTTGTCACAAGGAATAGGGTCATTCAAATGGAACAAAGGGTCAATGTTCTCTAGAAATAAGGATTCTCATGGCTCTCACAGGACTCCAGATAAATACCAGTCACTTGAATCTATTGGAAATGTGAGTGTGGATTCAGCAGTATCCTTGCCTGCAAGGGTTGAAAGAAAGCCTTTTACAAGATTTGTGTGA
Protein sequence

>Msa0652180

MRCPHSLPIEVNTFCNFGSSVTTNKTNNSSFIFQFLSGRNRNATEMGKKGSWFSAIKRVFTHHSKGKDSENKSTKEKKKGVGKLKHGETNSFIPLFREPSSIEKIFGDFEREQQVLAIRPPTPPERPKTPPFVPPRVASPRPPSPKPPSPRDPSPRAASPRVTSPKAASSRNVHQHKEVRNRPEPTLQNQHVSATKIQAAYRGYMARKSFRALKGLVRLQGVVRGQNVKRQTVNAMKHMQLLVRVQSQIQSRRIQMLENQARYQAEYKNEAGSTLGKSALGHGSEAGNNEDWDDSLLTKEEVEARLQRKLWKATPKSTQTPVTDTRSSGFPWWWNWLERQLPASNPQEKQVLKNFQFTPPRPYSEQKTSPRPGSSSQRPFAFDNMDTPTPKSTRSTIFPSSKPSRTPPFRTPQGNTSSAMSKYSRPRGVGSNSPFDVPLKDDDSLTSCPPFSVPNYMAPTVSAKAKVRASSNPRERFGGGSSGCATPTSTDSKRRVSFPLSQGIGSFKWNKGSMFSRNKDSHGSHRTPDKYQSLESIGNVSVDSAVSLPARVERKPFTRFV*