AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0515440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0515440 MtrunA17_Chr3g0124871 98.305 413 7 0 1 413 1 413 0.0 835
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0515440 AT1G69740.1 77.546 432 73 3 3 413 2 430 0.0 647
Msa0515440 AT1G69740.3 77.546 432 73 3 3 413 2 430 0.0 647
Msa0515440 AT1G69740.2 77.546 432 73 3 3 413 2 430 0.0 647
Msa0515440 AT1G44318.1 70.455 352 95 2 62 413 59 401 0.0 512

Find 131 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAAAGCATCTGGAATTT+TGG 0.073758 3_4:-66676964 None:intergenic
CTTTGAGCTCTCTGGCCTTC+TGG 0.109394 3_4:-66680067 None:intergenic
CTTTATTCACAACAGGTTTC+TGG 0.142989 3_4:+66679853 Msa0515440:intron
GAAGCCTGGGCTTCCTTATT+TGG 0.157019 3_4:+66679065 Msa0515440:CDS
TACACATCGATCCGCGTTTC+AGG 0.190551 3_4:+66675952 Msa0515440:CDS
GAGTCCAATGCTTCCCTAAA+TGG 0.193544 3_4:-66678736 None:intergenic
ATTCAGTTTCACCTCCTTAT+TGG 0.222175 3_4:+66675445 Msa0515440:five_prime_UTR
TTACACCATTTGTAAGATAA+TGG 0.240086 3_4:-66680165 None:intergenic
GTGAGATTCTTCAAACATTT+AGG 0.248335 3_4:+66680032 Msa0515440:exon
AACGTTGGTGTGTGAATTTA+AGG 0.252371 3_4:-66675589 None:intergenic
TCATGCCCATCTGAAGAATA+TGG 0.266166 3_4:-66677269 None:intergenic
TTTGAGCTCTCTGGCCTTCT+GGG 0.294963 3_4:-66680066 None:intergenic
TTTAAGGTTAAGGGTGTGTT+TGG 0.329848 3_4:-66675573 None:intergenic
TACACCATTTGTAAGATAAT+GGG 0.335377 3_4:-66680164 None:intergenic
CGACGAGGACGCCTCTGAAT+TGG 0.335567 3_4:-66675914 None:intergenic
AAGAAGATAAGTTATTATTA+AGG 0.335812 3_4:-66675417 None:intergenic
TGGTGAGTACTCGATGATTA+AGG 0.335831 3_4:+66679873 Msa0515440:CDS
CAAAATTCCAGATGCTTTGA+AGG 0.350403 3_4:+66676965 Msa0515440:CDS
GTGTGTGAATTTAAGGTTAA+GGG 0.356716 3_4:-66675582 None:intergenic
AGCCTTATGATATCCAAATA+AGG 0.360550 3_4:-66679078 None:intergenic
AAAGCCTCTCTGTAGTTTGC+CGG 0.370396 3_4:-66678899 None:intergenic
TTCCTTATTTGGATATCATA+AGG 0.373814 3_4:+66679076 Msa0515440:CDS
AATCTAGATAACAACCAATA+AGG 0.377285 3_4:-66675459 None:intergenic
CTGTGTTCACTTACAAGATC+AGG 0.387731 3_4:-66677140 None:intergenic
GAAGAGAAAAGGAACGTTGC+TGG 0.392659 3_4:+66675194 None:intergenic
AATAGAACCTTCAAAGCATC+TGG 0.395086 3_4:-66676972 None:intergenic
GAAATTGAATAAAATTTGTC+TGG 0.395890 3_4:+66675360 Msa0515440:five_prime_UTR
TGTCAGCACCGGCACGTCTA+AGG 0.398953 3_4:-66679954 None:intergenic
TCTATATGACAGAAGGCTAA+TGG 0.402425 3_4:-66680304 None:intergenic
GTCAAATGCTTTGAGCTCTC+TGG 0.403806 3_4:-66680075 None:intergenic
CTTGTAGAGCAAAATATGTT+AGG 0.407581 3_4:-66679981 None:intergenic
CCTACACCGGCTGCACCTGC+TGG 0.413535 3_4:+66675762 Msa0515440:CDS
CATCCGGGCATAGCACCAAT+TGG 0.415152 3_4:-66676316 None:intergenic
AATCTCCGATTACGATCATA+TGG 0.417432 3_4:+66675533 Msa0515440:exon
GGCGGTACAGGAGGCGCATC+CGG 0.419126 3_4:-66675741 None:intergenic
GCAGCCGGTGTAGGCGGTAC+AGG 0.421060 3_4:-66675753 None:intergenic
AGTCCAATGCTTCCCTAAAT+GGG 0.431083 3_4:-66678735 None:intergenic
AGAAGGAGCTGATATTCTAT+TGG 0.434691 3_4:+66678946 Msa0515440:CDS
TTAGCCTTCTGTCATATAGA+AGG 0.436080 3_4:+66680307 Msa0515440:three_prime_UTR
TAGTTCTTCAATGGTAGTGC+TGG 0.437216 3_4:-66675621 None:intergenic
AGAAGCCATATGATCGTAAT+CGG 0.438905 3_4:-66675538 None:intergenic
ATCCGGGCATAGCACCAATT+GGG 0.443550 3_4:-66676315 None:intergenic
TTCGAAGCCGCTGTTGTCGC+TGG 0.446142 3_4:+66675711 Msa0515440:CDS
TCAACCCATTATCTTACAAA+TGG 0.451285 3_4:+66680160 Msa0515440:three_prime_UTR
CCAACCAAGCCTGTAGCATC+CGG 0.454753 3_4:-66676332 None:intergenic
TAAAATGATTGATGAAGAAA+AGG 0.462660 3_4:+66679909 Msa0515440:CDS
TGGCCCATTTAGGGAAGCAT+TGG 0.464040 3_4:+66678732 Msa0515440:CDS
AGAACCTGGTATGCTGCAAT+TGG 0.471730 3_4:-66679123 None:intergenic
TTGCATGTGCAGGTGAAGCC+TGG 0.473131 3_4:+66679051 Msa0515440:intron
CCAGCAGGTGCAGCCGGTGT+AGG 0.473347 3_4:-66675762 None:intergenic
GGCGTTCCAGCAGGTGCAGC+CGG 0.474188 3_4:-66675768 None:intergenic
TTGTATGCCTCATCTCCTGT+GGG 0.474392 3_4:-66677068 None:intergenic
GGTGAGGAGGACACCCCAAT+TGG 0.474774 3_4:+66676301 Msa0515440:intron
GTCACCACTGGCGTTCCAGC+AGG 0.476216 3_4:-66675777 None:intergenic
GTGCTATGCCCGGATGCTAC+AGG 0.477134 3_4:+66676323 Msa0515440:CDS
ACCCCAATTGGTGCTATGCC+CGG 0.482806 3_4:+66676313 Msa0515440:CDS
TAGTTGGTGAAGGGTAGAAA+TGG 0.483889 3_4:+66675338 Msa0515440:intron
GACCACATCTGCTCCAGCAC+GGG 0.485822 3_4:-66677973 None:intergenic
TTAAGTAATCGTATAGTTCG+AGG 0.489270 3_4:-66677107 None:intergenic
TTCTAGTTATTCTGCTGTTG+AGG 0.493613 3_4:-66680226 None:intergenic
GGTGTGTGAATTTAAGGTTA+AGG 0.494498 3_4:-66675583 None:intergenic
AAGCCTCTCTGTAGTTTGCC+GGG 0.500631 3_4:-66678898 None:intergenic
AAGCTCAAATAGTTCTTCAA+TGG 0.500921 3_4:-66675630 None:intergenic
TGATGAAGAAAAGGTGATGA+TGG 0.507074 3_4:+66679918 Msa0515440:CDS
CGACCATCCATCATATCGCT+GGG 0.509074 3_4:-66677999 None:intergenic
GACGGCATTGTTAGAGAAGA+TGG 0.510196 3_4:+66677290 Msa0515440:CDS
CATGCCCATCTGAAGAATAT+GGG 0.510541 3_4:-66677268 None:intergenic
ACGACCATCCATCATATCGC+TGG 0.517199 3_4:-66678000 None:intergenic
AGTGGATAAACAAAATTAGC+AGG 0.519439 3_4:-66675989 None:intergenic
GAACAAGTACGCACGGGACA+TGG 0.523078 3_4:-66675393 None:intergenic
CGAGCAGCTCTCGATGCTGA+AGG 0.524524 3_4:+66678035 Msa0515440:CDS
TAATTCAGGTTGCAAAAGCA+CGG 0.525795 3_4:+66676910 Msa0515440:intron
GCTGCCAATTGCAGCATACC+AGG 0.526983 3_4:+66679119 Msa0515440:CDS
GGCCCGTGCTGGAGCAGATG+TGG 0.528623 3_4:+66677971 Msa0515440:intron
CTCGATGATTAAGGCTGGTG+GGG 0.530917 3_4:+66679882 Msa0515440:CDS
TGACCACATCTGCTCCAGCA+CGG 0.535344 3_4:-66677974 None:intergenic
GTTGCAAAAGCACGGGATGT+TGG 0.543180 3_4:+66676918 Msa0515440:CDS
GGTCAGCCCCAGCGATATGA+TGG 0.544470 3_4:+66677992 Msa0515440:CDS
TACAGGCTTGGTTGGAGACA+CGG 0.544880 3_4:+66676340 Msa0515440:CDS
GCAGGTGCAGCCGGTGTAGG+CGG 0.548510 3_4:-66675759 None:intergenic
TACTCGATGATTAAGGCTGG+TGG 0.549281 3_4:+66679880 Msa0515440:CDS
TTAGACCCATATTCTTCAGA+TGG 0.549974 3_4:+66677263 Msa0515440:CDS
AAGGAGGTGAAACTGAATGA+TGG 0.552578 3_4:-66675440 None:intergenic
ATTGTATGCCTCATCTCCTG+TGG 0.553141 3_4:-66677069 None:intergenic
GATGAGGCATACAATGAGAA+TGG 0.554516 3_4:+66677077 Msa0515440:CDS
ATGCCCGGATGCTACAGGCT+TGG 0.560235 3_4:+66676328 Msa0515440:CDS
TGCATGTGCAGGTGAAGCCT+GGG 0.561269 3_4:+66679052 Msa0515440:intron
ATATCCAAATAAGGAAGCCC+AGG 0.561431 3_4:-66679069 None:intergenic
GAGAGGCTTTGACTGAAATG+AGG 0.562495 3_4:+66678912 Msa0515440:CDS
GAAGCAGTCATAGTTGGTGA+AGG 0.563474 3_4:+66675328 Msa0515440:intron
TAGACCCATATTCTTCAGAT+GGG 0.565926 3_4:+66677264 Msa0515440:CDS
ACTCGATGATTAAGGCTGGT+GGG 0.569222 3_4:+66679881 Msa0515440:CDS
CCGGATGCTACAGGCTTGGT+TGG 0.571140 3_4:+66676332 Msa0515440:CDS
CAACCAAGCCTGTAGCATCC+GGG 0.572018 3_4:-66676331 None:intergenic
TGGTATGCTGCAATTGGCAG+CGG 0.572258 3_4:-66679117 None:intergenic
TTGTAAACAAGCTGTAGCCC+AGG 0.575741 3_4:+66677775 Msa0515440:CDS
TGTTGTCGCTGGTAATGTGC+CGG 0.576305 3_4:+66675722 Msa0515440:CDS
AATTCAGGTTGCAAAAGCAC+GGG 0.578637 3_4:+66676911 Msa0515440:intron
TGCACCTGCTGGAACGCCAG+TGG 0.583715 3_4:+66675773 Msa0515440:CDS
TTACTGTGCCTTAGACGTGC+CGG 0.589296 3_4:+66679946 Msa0515440:CDS
GTATGCCTCATCTCCTGTGG+GGG 0.598288 3_4:-66677066 None:intergenic
TTAGCCTTCTATATGACAGA+AGG 0.598289 3_4:-66680311 None:intergenic
AGAGGCTTTGACTGAAATGA+GGG 0.601731 3_4:+66678913 Msa0515440:CDS
TTGTGTTTCAGCCAATTCAG+AGG 0.607027 3_4:+66675903 Msa0515440:intron
TATTCTTCAGATGGGCATGA+CGG 0.608908 3_4:+66677272 Msa0515440:CDS
GAGACACGGACTGTTGCAAG+AGG 0.609699 3_4:+66676354 Msa0515440:CDS
TGCTGGTTTAAGATCAACGT+TGG 0.610444 3_4:-66675604 None:intergenic
TGTTAGGATGATGTCAGCAC+CGG 0.612290 3_4:-66679965 None:intergenic
GCCGGTGTAGGCGGTACAGG+AGG 0.615236 3_4:-66675750 None:intergenic
TGTGTTCACTTACAAGATCA+GGG 0.616355 3_4:-66677139 None:intergenic
AGCCCCAGCGATATGATGGA+TGG 0.618898 3_4:+66677996 Msa0515440:CDS
ATGAGGGAAGATGAATCAGA+AGG 0.619265 3_4:+66678929 Msa0515440:CDS
AAGCAGTCATAGTTGGTGAA+GGG 0.619704 3_4:+66675329 Msa0515440:intron
GAGTACTCGATGATTAAGGC+TGG 0.624101 3_4:+66679877 Msa0515440:CDS
TTAAGGTGAACAAGTACGCA+CGG 0.624642 3_4:-66675400 None:intergenic
TCCGGGCATAGCACCAATTG+GGG 0.638719 3_4:-66676314 None:intergenic
CTAGATAACAACCAATAAGG+AGG 0.641193 3_4:-66675456 None:intergenic
CTCACAAGTGAAGTCACCAC+TGG 0.642836 3_4:-66675789 None:intergenic
TGTATGCCTCATCTCCTGTG+GGG 0.643917 3_4:-66677067 None:intergenic
CAAAAGCTATCAGATGAACC+CGG 0.644138 3_4:+66678880 Msa0515440:intron
CACATTACCAGCGACAACAG+CGG 0.644957 3_4:-66675718 None:intergenic
GCCTCCTGTACCGCCTACAC+CGG 0.648035 3_4:+66675749 Msa0515440:CDS
GCTCAAAGCATTTGACAGTG+TGG 0.658784 3_4:+66680082 Msa0515440:three_prime_UTR
TAAGGTGAACAAGTACGCAC+GGG 0.662308 3_4:-66675399 None:intergenic
GATATGATGGATGGTCGTGT+TGG 0.663532 3_4:+66678005 Msa0515440:CDS
TGGTGTAATTTAATCAACTG+CGG 0.675934 3_4:+66680180 Msa0515440:three_prime_UTR
TAAAGTTGTTTCCTGAAACG+CGG 0.676695 3_4:-66675963 None:intergenic
CGTAATCGGAGATTGAAGCG+TGG 0.722953 3_4:-66675524 None:intergenic
GACCATCCATCATATCGCTG+GGG 0.723541 3_4:-66677998 None:intergenic
GAACCCGGCAAACTACAGAG+AGG 0.774109 3_4:+66678895 Msa0515440:CDS
GCTGATCTTCTATTACGACG+AGG 0.800899 3_4:-66675929 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTTTATTGATC+TGG + chr3_4:66678261-66678280 Msa0515440:intron 10.0%
!! AAGAAGATAAGTTATTATTA+AGG - chr3_4:66675420-66675439 None:intergenic 15.0%
!! TTTAGAAGATAAAAAAGAAA+AGG - chr3_4:66676815-66676834 None:intergenic 15.0%
!! TAAACTAAAATTCAATACTA+AGG - chr3_4:66676872-66676891 None:intergenic 15.0%
!! TATATTCTACCAAAAATTTA+TGG - chr3_4:66677013-66677032 None:intergenic 15.0%
!!! TAATCTAAACATTTTACATT+TGG + chr3_4:66677431-66677450 Msa0515440:intron 15.0%
!!! TTGTGTTTTTATTTTATGAA+AGG + chr3_4:66677950-66677969 Msa0515440:intron 15.0%
!! AAATAAGTTTAGTAAAAAGA+AGG + chr3_4:66678196-66678215 Msa0515440:intron 15.0%
!!! AATTTCTATTTTTGTAGAAT+TGG - chr3_4:66678588-66678607 None:intergenic 15.0%
!!! TAAAAAAACGATTTTAACTC+TGG + chr3_4:66675232-66675251 Msa0515440:five_prime_UTR 20.0%
!! GAAATTGAATAAAATTTGTC+TGG + chr3_4:66675360-66675379 Msa0515440:five_prime_UTR 20.0%
!!! TGATTTTTTTTTGTGTGTTT+TGG + chr3_4:66675880-66675899 Msa0515440:intron 20.0%
!!! TGTTTTTTTTTTTACAGCAA+TGG - chr3_4:66676570-66676589 None:intergenic 20.0%
!!! AGATTATGCAGATATTTTTT+TGG + chr3_4:66676601-66676620 Msa0515440:intron 20.0%
!!! AAAAGGTTTTATGTTTGTTT+GGG - chr3_4:66676798-66676817 None:intergenic 20.0%
!!! TTGAGAATGTTATATTTTTC+TGG + chr3_4:66677172-66677191 Msa0515440:intron 20.0%
!!! TTTTCCAGGAATAATATTAA+AGG - chr3_4:66677538-66677557 None:intergenic 20.0%
!!! TCTTTTTTAATTTCTTTTCC+AGG - chr3_4:66677552-66677571 None:intergenic 20.0%
!! GAAATTAAAAAAGAAATCGT+CGG + chr3_4:66677558-66677577 Msa0515440:intron 20.0%
!! AAATTAAAAAAGAAATCGTC+GGG + chr3_4:66677559-66677578 Msa0515440:intron 20.0%
!!! TTATATTTTTATATCGAGCT+GGG + chr3_4:66679188-66679207 Msa0515440:intron 20.0%
!! TAAAATGATTGATGAAGAAA+AGG + chr3_4:66679909-66679928 Msa0515440:CDS 20.0%
!!! TTAATAAAGTCAACTTTTTG+CGG + chr3_4:66680267-66680286 Msa0515440:three_prime_UTR 20.0%
!!! CATAAAATTATTTTACCGCT+TGG - chr3_4:66675279-66675298 None:intergenic 25.0%
! AATCTAGATAACAACCAATA+AGG - chr3_4:66675462-66675481 None:intergenic 25.0%
!!! TATCCACTTTTTATACATGA+AGG + chr3_4:66676004-66676023 Msa0515440:CDS 25.0%
! TAACCTTCATGTATAAAAAG+TGG - chr3_4:66676010-66676029 None:intergenic 25.0%
! AAATTTAGCTGAGAAAATGT+TGG + chr3_4:66676462-66676481 Msa0515440:intron 25.0%
!!! AATTCAATACCACTTTTGAA+TGG - chr3_4:66676533-66676552 None:intergenic 25.0%
!! ATTCAAAAGTGGTATTGAAT+TGG + chr3_4:66676532-66676551 Msa0515440:intron 25.0%
!! TTCAAAAGTGGTATTGAATT+GGG + chr3_4:66676533-66676552 Msa0515440:intron 25.0%
!! AATTTTATTCTTTACCGATC+TGG + chr3_4:66676627-66676646 Msa0515440:intron 25.0%
!! AGAGTTTGGATAGATTTTAT+TGG + chr3_4:66676654-66676673 Msa0515440:intron 25.0%
!! GAGTTTGGATAGATTTTATT+GGG + chr3_4:66676655-66676674 Msa0515440:intron 25.0%
!!! GAAAAGGTTTTATGTTTGTT+TGG - chr3_4:66676799-66676818 None:intergenic 25.0%
!!! AAAAAGATTTTGACGACAAA+AGG - chr3_4:66677332-66677351 None:intergenic 25.0%
! ATCATGTTCTGTAACAAAAT+AGG - chr3_4:66677361-66677380 None:intergenic 25.0%
!! AACATTTTACATTTGGATGA+TGG + chr3_4:66677438-66677457 Msa0515440:intron 25.0%
! TGTACCTTTAATATTATTCC+TGG + chr3_4:66677531-66677550 Msa0515440:intron 25.0%
! ATGATTTGAACTATTCTTGA+AGG + chr3_4:66677645-66677664 Msa0515440:intron 25.0%
!! TTATTGACTACAATCAAGAA+AGG - chr3_4:66677684-66677703 None:intergenic 25.0%
! GTATATCCTTAATATCTTGT+AGG + chr3_4:66677719-66677738 Msa0515440:intron 25.0%
! ATAACTCCTACAAGATATTA+AGG - chr3_4:66677728-66677747 None:intergenic 25.0%
! AAGATGTAGTTATATTACCT+GGG - chr3_4:66677795-66677814 None:intergenic 25.0%
! AAAGATGTAGTTATATTACC+TGG - chr3_4:66677796-66677815 None:intergenic 25.0%
!!! AAGTTACCATTATTTTGTTC+AGG + chr3_4:66677838-66677857 Msa0515440:intron 25.0%
!!! AGTTACCATTATTTTGTTCA+GGG + chr3_4:66677839-66677858 Msa0515440:intron 25.0%
! AAGTATAGCAAGAAAAACTT+TGG - chr3_4:66677896-66677915 None:intergenic 25.0%
! ACTAAATTATGTTAGTGTCT+TGG - chr3_4:66677930-66677949 None:intergenic 25.0%
!!! TAAACTTATTTCTAAAGCTC+AGG - chr3_4:66678187-66678206 None:intergenic 25.0%
! AGAAATTATGACTAACAAGA+TGG + chr3_4:66678601-66678620 Msa0515440:intron 25.0%
!! TATCATGCATATTTTCTTGT+CGG + chr3_4:66678645-66678664 Msa0515440:intron 25.0%
!! TTCTAAATTATGCCGTTTAT+TGG + chr3_4:66678681-66678700 Msa0515440:intron 25.0%
! TTATGTATACGATCATAGTT+AGG + chr3_4:66678983-66679002 Msa0515440:intron 25.0%
!! TTCCTTATTTGGATATCATA+AGG + chr3_4:66679076-66679095 Msa0515440:CDS 25.0%
!!! CTTATATTTTTATATCGAGC+TGG + chr3_4:66679187-66679206 Msa0515440:intron 25.0%
!!! TATATTTTTATATCGAGCTG+GGG + chr3_4:66679189-66679208 Msa0515440:intron 25.0%
!!! TAACCATTTTTGGAAAGAAT+CGG - chr3_4:66679288-66679307 None:intergenic 25.0%
! TCTTTCCAAAAATGGTTAAT+CGG + chr3_4:66679290-66679309 Msa0515440:intron 25.0%
!! CGCTTTATTGTAATAAACTT+TGG + chr3_4:66679526-66679545 Msa0515440:intron 25.0%
! AGATAAGATACAAAAACAGT+TGG + chr3_4:66679653-66679672 Msa0515440:intron 25.0%
! GTTGTTCATCATAGATATTA+TGG + chr3_4:66679709-66679728 Msa0515440:intron 25.0%
! ATTGACTGCTTTAATCTTAA+GGG - chr3_4:66679758-66679777 None:intergenic 25.0%
! AATTGACTGCTTTAATCTTA+AGG - chr3_4:66679759-66679778 None:intergenic 25.0%
!! TGACAAAAACAACACATTTT+GGG - chr3_4:66680143-66680162 None:intergenic 25.0%
!! TTGACAAAAACAACACATTT+TGG - chr3_4:66680144-66680163 None:intergenic 25.0%
! TACACCATTTGTAAGATAAT+GGG - chr3_4:66680167-66680186 None:intergenic 25.0%
! TTACACCATTTGTAAGATAA+TGG - chr3_4:66680168-66680187 None:intergenic 25.0%
!! AAAATTATTTTACCGCTTGG+TGG - chr3_4:66675276-66675295 None:intergenic 30.0%
! GTGTGTGAATTTAAGGTTAA+GGG - chr3_4:66675585-66675604 None:intergenic 30.0%
AAGCTCAAATAGTTCTTCAA+TGG - chr3_4:66675633-66675652 None:intergenic 30.0%
AGTGGATAAACAAAATTAGC+AGG - chr3_4:66675992-66676011 None:intergenic 30.0%
!! ATACATGAAGGTTAGTCTTA+AGG + chr3_4:66676016-66676035 Msa0515440:intron 30.0%
AAACTCTTGTGAAACTGTTT+CGG + chr3_4:66676078-66676097 Msa0515440:intron 30.0%
!! TACATACATTGTTAGCTTGT+AGG + chr3_4:66676213-66676232 Msa0515440:intron 30.0%
! AATATTTGAACCCTTTTTGC+AGG + chr3_4:66676280-66676299 Msa0515440:intron 30.0%
! TGTTGCAAGAGGTTTTTATA+TGG + chr3_4:66676365-66676384 Msa0515440:intron 30.0%
ATGACATTACCATTCAAAAG+TGG + chr3_4:66676521-66676540 Msa0515440:intron 30.0%
! TCAAAAGTGGTATTGAATTG+GGG + chr3_4:66676534-66676553 Msa0515440:intron 30.0%
TGTAATGAGAAGTTCAACAT+TGG - chr3_4:66676691-66676710 None:intergenic 30.0%
!! TTCAAAGCATCTGGAATTTT+GGG - chr3_4:66676966-66676985 None:intergenic 30.0%
! TCACACTTGCCATAAATTTT+TGG + chr3_4:66677001-66677020 Msa0515440:intron 30.0%
TTAAGTAATCGTATAGTTCG+AGG - chr3_4:66677110-66677129 None:intergenic 30.0%
CAGAACATGATTCATTTCAT+TGG + chr3_4:66677370-66677389 Msa0515440:intron 30.0%
AGAATCCCTGAACAAAATAA+TGG - chr3_4:66677847-66677866 None:intergenic 30.0%
!! GAAAAACTTTGGAACATAGA+AGG - chr3_4:66677885-66677904 None:intergenic 30.0%
GCAAAAACAGAAAGTAAGAT+CGG - chr3_4:66678126-66678145 None:intergenic 30.0%
AAATCGACAATTGCTAATGA+TGG + chr3_4:66678236-66678255 Msa0515440:intron 30.0%
AATCGACAATTGCTAATGAT+GGG + chr3_4:66678237-66678256 Msa0515440:intron 30.0%
CTTACAAGTTTGTGTTAAGA+AGG + chr3_4:66678290-66678309 Msa0515440:intron 30.0%
TATCGATGGCTATCTATTAT+AGG + chr3_4:66678325-66678344 Msa0515440:intron 30.0%
TCTATTATAGGTTGTAGCAT+TGG + chr3_4:66678337-66678356 Msa0515440:intron 30.0%
CTATTATAGGTTGTAGCATT+GGG + chr3_4:66678338-66678357 Msa0515440:intron 30.0%
GTGAAGATATTCAAAATGTG+TGG + chr3_4:66678366-66678385 Msa0515440:intron 30.0%
TTATGACTAACAAGATGGAT+TGG + chr3_4:66678606-66678625 Msa0515440:intron 30.0%
! TTCATTTTATGGCCCATTTA+GGG + chr3_4:66678723-66678742 Msa0515440:CDS 30.0%
! ACGTCTTTTTATCTCCAAAA+CGG - chr3_4:66678768-66678787 None:intergenic 30.0%
TATTTACGTTGCCATATACT+TGG + chr3_4:66678847-66678866 Msa0515440:intron 30.0%
TATACGATCATAGTTAGGAA+TGG + chr3_4:66678988-66679007 Msa0515440:intron 30.0%
TTTAGAAAATTTGCATGTGC+AGG + chr3_4:66679041-66679060 Msa0515440:intron 30.0%
! AGCCTTATGATATCCAAATA+AGG - chr3_4:66679081-66679100 None:intergenic 30.0%
TTTATGCCAAGAACTAGAAT+GGG - chr3_4:66679156-66679175 None:intergenic 30.0%
AATCCGATTCTTTCCAAAAA+TGG + chr3_4:66679282-66679301 Msa0515440:intron 30.0%
CTTTCCAAAAATGGTTAATC+GGG + chr3_4:66679291-66679310 Msa0515440:intron 30.0%
! AATTCCCGATTAACCATTTT+TGG - chr3_4:66679298-66679317 None:intergenic 30.0%
TCATCATTCACATAAAACCA+AGG - chr3_4:66679790-66679809 None:intergenic 30.0%
AGAAACCTGTTGTGAATAAA+GGG - chr3_4:66679854-66679873 None:intergenic 30.0%
CTTGTAGAGCAAAATATGTT+AGG - chr3_4:66679984-66680003 None:intergenic 30.0%
! GATTTTTGTGTGGAGAAAAA+AGG + chr3_4:66680010-66680029 Msa0515440:CDS 30.0%
GTGAGATTCTTCAAACATTT+AGG + chr3_4:66680032-66680051 Msa0515440:exon 30.0%
! GACAAAAACAACACATTTTG+GGG - chr3_4:66680142-66680161 None:intergenic 30.0%
TCAACCCATTATCTTACAAA+TGG + chr3_4:66680160-66680179 Msa0515440:three_prime_UTR 30.0%
TGGTGTAATTTAATCAACTG+CGG + chr3_4:66680180-66680199 Msa0515440:three_prime_UTR 30.0%
ATAGAAGAAGCAGTCATAGT+TGG + chr3_4:66675322-66675341 Msa0515440:intron 35.0%
ATTCAGTTTCACCTCCTTAT+TGG + chr3_4:66675445-66675464 Msa0515440:five_prime_UTR 35.0%
CTAGATAACAACCAATAAGG+AGG - chr3_4:66675459-66675478 None:intergenic 35.0%
AATCTCCGATTACGATCATA+TGG + chr3_4:66675533-66675552 Msa0515440:exon 35.0%
AGAAGCCATATGATCGTAAT+CGG - chr3_4:66675541-66675560 None:intergenic 35.0%
! TTTAAGGTTAAGGGTGTGTT+TGG - chr3_4:66675576-66675595 None:intergenic 35.0%
! GGTGTGTGAATTTAAGGTTA+AGG - chr3_4:66675586-66675605 None:intergenic 35.0%
AACGTTGGTGTGTGAATTTA+AGG - chr3_4:66675592-66675611 None:intergenic 35.0%
GCACTAAAAATGCACAAACA+CGG - chr3_4:66675833-66675852 None:intergenic 35.0%
! TAAAGTTGTTTCCTGAAACG+CGG - chr3_4:66675966-66675985 None:intergenic 35.0%
!! GTTAGTCTTAAGGACATGTT+TGG + chr3_4:66676026-66676045 Msa0515440:intron 35.0%
! TTGGACTTTGAAAATGTAGC+AGG + chr3_4:66676481-66676500 Msa0515440:intron 35.0%
!! ACATTGCTTGATTGTTTCTG+AGG + chr3_4:66676708-66676727 Msa0515440:intron 35.0%
! CAGTGAGCATTTTGTAATTC+AGG + chr3_4:66676896-66676915 Msa0515440:intron 35.0%
!! TAATTCAGGTTGCAAAAGCA+CGG + chr3_4:66676910-66676929 Msa0515440:intron 35.0%
!! TCAAAGCATCTGGAATTTTG+GGG - chr3_4:66676965-66676984 None:intergenic 35.0%
!! CTTCAAAGCATCTGGAATTT+TGG - chr3_4:66676967-66676986 None:intergenic 35.0%
CAAAATTCCAGATGCTTTGA+AGG + chr3_4:66676965-66676984 Msa0515440:CDS 35.0%
! AATAGAACCTTCAAAGCATC+TGG - chr3_4:66676975-66676994 None:intergenic 35.0%
TGTGTTCACTTACAAGATCA+GGG - chr3_4:66677142-66677161 None:intergenic 35.0%
CAACAGTTGAACAAGGATAT+TGG - chr3_4:66677217-66677236 None:intergenic 35.0%
TTAGACCCATATTCTTCAGA+TGG + chr3_4:66677263-66677282 Msa0515440:CDS 35.0%
TAGACCCATATTCTTCAGAT+GGG + chr3_4:66677264-66677283 Msa0515440:CDS 35.0%
TTACCAACACAAGTTCATAC+AGG - chr3_4:66677610-66677629 None:intergenic 35.0%
GTTCAAATCATGCAAATCCT+AGG - chr3_4:66677636-66677655 None:intergenic 35.0%
TGAACTATTCTTGAAGGAAG+TGG + chr3_4:66677651-66677670 Msa0515440:intron 35.0%
TCATGTGTACATCTTCAACT+AGG + chr3_4:66677815-66677834 Msa0515440:intron 35.0%
ATTATGTTAGTGTCTTGGTG+CGG - chr3_4:66677925-66677944 None:intergenic 35.0%
AGCAAAGTAATTTGATCGCT+TGG + chr3_4:66678088-66678107 Msa0515440:intron 35.0%
AGTAAGATCGGAAAAGGAAA+TGG - chr3_4:66678114-66678133 None:intergenic 35.0%
ACAGAAAGTAAGATCGGAAA+AGG - chr3_4:66678120-66678139 None:intergenic 35.0%
CAATAATTTCCAATGCATGC+AGG - chr3_4:66678148-66678167 None:intergenic 35.0%
AATTTGAACGCTACGGTTAT+TGG - chr3_4:66678483-66678502 None:intergenic 35.0%
CAAATATAGTGAGATGCTCA+TGG - chr3_4:66678528-66678547 None:intergenic 35.0%
!! ATTGTCACTGATTTGCTCAT+TGG + chr3_4:66678558-66678577 Msa0515440:intron 35.0%
! GTTCATTTTATGGCCCATTT+AGG + chr3_4:66678722-66678741 Msa0515440:CDS 35.0%
! TCTTTTTATCTCCAAAACGG+GGG - chr3_4:66678765-66678784 None:intergenic 35.0%
! GTCTTTTTATCTCCAAAACG+GGG - chr3_4:66678766-66678785 None:intergenic 35.0%
! CGTCTTTTTATCTCCAAAAC+GGG - chr3_4:66678767-66678786 None:intergenic 35.0%
AGAAGGAGCTGATATTCTAT+TGG + chr3_4:66678946-66678965 Msa0515440:CDS 35.0%
GTTTATGCCAAGAACTAGAA+TGG - chr3_4:66679157-66679176 None:intergenic 35.0%
TCATGTGAATCTTCCAGTTT+GGG + chr3_4:66679348-66679367 Msa0515440:intron 35.0%
CTGCTTTAATCTTAAGGGTA+GGG - chr3_4:66679753-66679772 None:intergenic 35.0%
ACTGCTTTAATCTTAAGGGT+AGG - chr3_4:66679754-66679773 None:intergenic 35.0%
CAGTCAATTAGAGAAAACCT+TGG + chr3_4:66679770-66679789 Msa0515440:intron 35.0%
AAACCTGTTGTGAATAAAGG+GGG - chr3_4:66679852-66679871 None:intergenic 35.0%
GAAACCTGTTGTGAATAAAG+GGG - chr3_4:66679853-66679872 None:intergenic 35.0%
CAGAAACCTGTTGTGAATAA+AGG - chr3_4:66679855-66679874 None:intergenic 35.0%
CTTTATTCACAACAGGTTTC+TGG + chr3_4:66679853-66679872 Msa0515440:intron 35.0%
TGATGAAGAAAAGGTGATGA+TGG + chr3_4:66679918-66679937 Msa0515440:CDS 35.0%
! TTCTAGTTATTCTGCTGTTG+AGG - chr3_4:66680229-66680248 None:intergenic 35.0%
TCTATATGACAGAAGGCTAA+TGG - chr3_4:66680307-66680326 None:intergenic 35.0%
! TTAGCCTTCTGTCATATAGA+AGG + chr3_4:66680307-66680326 Msa0515440:three_prime_UTR 35.0%
!!! ACGATTTTAACTCTGGTGAG+TGG + chr3_4:66675239-66675258 Msa0515440:five_prime_UTR 40.0%
!! AAGCAGTCATAGTTGGTGAA+GGG + chr3_4:66675329-66675348 Msa0515440:intron 40.0%
!! TAGTTGGTGAAGGGTAGAAA+TGG + chr3_4:66675338-66675357 Msa0515440:intron 40.0%
TTAAGGTGAACAAGTACGCA+CGG - chr3_4:66675403-66675422 None:intergenic 40.0%
AAGGAGGTGAAACTGAATGA+TGG - chr3_4:66675443-66675462 None:intergenic 40.0%
!! TGCTGGTTTAAGATCAACGT+TGG - chr3_4:66675607-66675626 None:intergenic 40.0%
! TAGTTCTTCAATGGTAGTGC+TGG - chr3_4:66675624-66675643 None:intergenic 40.0%
CTGACAGTAAAAAGACATGG+AGG - chr3_4:66675675-66675694 None:intergenic 40.0%
GCTCTGACAGTAAAAAGACA+TGG - chr3_4:66675678-66675697 None:intergenic 40.0%
TTGTGTTTCAGCCAATTCAG+AGG + chr3_4:66675903-66675922 Msa0515440:intron 40.0%
!!! CTTTTTCGGTAGAGCTTTTG+TGG + chr3_4:66676178-66676197 Msa0515440:intron 40.0%
TTGTAGGTGTGAGTTGTGTT+GGG + chr3_4:66676229-66676248 Msa0515440:intron 40.0%
TCCAAACTCTTAGACCAGAT+CGG - chr3_4:66676644-66676663 None:intergenic 40.0%
!! AATTCAGGTTGCAAAAGCAC+GGG + chr3_4:66676911-66676930 Msa0515440:intron 40.0%
GATGAGGCATACAATGAGAA+TGG + chr3_4:66677077-66677096 Msa0515440:CDS 40.0%
CTGTGTTCACTTACAAGATC+AGG - chr3_4:66677143-66677162 None:intergenic 40.0%
TCCTTGTTCAACTGTTGTTC+AGG + chr3_4:66677220-66677239 Msa0515440:intron 40.0%
ACCTGAACAACAGTTGAACA+AGG - chr3_4:66677224-66677243 None:intergenic 40.0%
CATGCCCATCTGAAGAATAT+GGG - chr3_4:66677271-66677290 None:intergenic 40.0%
TCATGCCCATCTGAAGAATA+TGG - chr3_4:66677272-66677291 None:intergenic 40.0%
TATTCTTCAGATGGGCATGA+CGG + chr3_4:66677272-66677291 Msa0515440:CDS 40.0%
! TAATGCTAGAAGTATGCTGC+TGG - chr3_4:66677479-66677498 None:intergenic 40.0%
! AATCGTCGGGAATTAAGTTG+TGG + chr3_4:66677572-66677591 Msa0515440:intron 40.0%
CAACACAAGTTCATACAGGA+AGG - chr3_4:66677606-66677625 None:intergenic 40.0%
CTTCCTGTATGAACTTGTGT+TGG + chr3_4:66677604-66677623 Msa0515440:intron 40.0%
! ACTTGTGTTGGTAAAAGCCT+AGG + chr3_4:66677616-66677635 Msa0515440:intron 40.0%
GGATCTAGACTTACTATCGA+TGG + chr3_4:66678311-66678330 Msa0515440:intron 40.0%
! TAGGTTGTAGCATTGGGTAT+CGG + chr3_4:66678344-66678363 Msa0515440:intron 40.0%
CATTTCCATTATGCACAAGC+TGG + chr3_4:66678414-66678433 Msa0515440:intron 40.0%
AGAAACCAGCTTGTGCATAA+TGG - chr3_4:66678422-66678441 None:intergenic 40.0%
CTAGAGGAATTTGAACGCTA+CGG - chr3_4:66678490-66678509 None:intergenic 40.0%
ACCTGTTGGCAACCAATAAA+CGG - chr3_4:66678696-66678715 None:intergenic 40.0%
! AGGTACGCGAGTTCATTTTA+TGG + chr3_4:66678712-66678731 Msa0515440:intron 40.0%
AGTCCAATGCTTCCCTAAAT+GGG - chr3_4:66678738-66678757 None:intergenic 40.0%
TGGCACTCAGTTCAATTTCA+AGG - chr3_4:66678799-66678818 None:intergenic 40.0%
CAAAAGCTATCAGATGAACC+CGG + chr3_4:66678880-66678899 Msa0515440:intron 40.0%
! AGAGGCTTTGACTGAAATGA+GGG + chr3_4:66678913-66678932 Msa0515440:CDS 40.0%
ATGAGGGAAGATGAATCAGA+AGG + chr3_4:66678929-66678948 Msa0515440:CDS 40.0%
GGAGCTGATATTCTATTGGT+TGG + chr3_4:66678950-66678969 Msa0515440:intron 40.0%
ATATCCAAATAAGGAAGCCC+AGG - chr3_4:66679072-66679091 None:intergenic 40.0%
CTCATGTGAATCTTCCAGTT+TGG + chr3_4:66679347-66679366 Msa0515440:intron 40.0%
AGCAGTTCATATTCCCAAAC+TGG - chr3_4:66679364-66679383 None:intergenic 40.0%
TTACAGATGGGTAAGGGAAA+AGG - chr3_4:66679591-66679610 None:intergenic 40.0%
! TTTTCCCTTACCCATCTGTA+AGG + chr3_4:66679590-66679609 Msa0515440:intron 40.0%
ATGTTCCAGACCTTACAGAT+GGG - chr3_4:66679603-66679622 None:intergenic 40.0%
CTGGAACATCATTTAGACAG+TGG + chr3_4:66679614-66679633 Msa0515440:intron 40.0%
TGGTGAGTACTCGATGATTA+AGG + chr3_4:66679873-66679892 Msa0515440:CDS 40.0%
! AGGACAATTTTCTTCCCAGA+AGG + chr3_4:66680052-66680071 Msa0515440:three_prime_UTR 40.0%
! GACTTTTACGTTCCACCAAG+CGG + chr3_4:66675261-66675280 Msa0515440:five_prime_UTR 45.0%
!! GAAGCAGTCATAGTTGGTGA+AGG + chr3_4:66675328-66675347 Msa0515440:intron 45.0%
TAAGGTGAACAAGTACGCAC+GGG - chr3_4:66675402-66675421 None:intergenic 45.0%
GCTGATCTTCTATTACGACG+AGG - chr3_4:66675932-66675951 None:intergenic 45.0%
AGCTTGTATCCGTATGCTCT+CGG + chr3_4:66676155-66676174 Msa0515440:intron 45.0%
CTTGTAGGTGTGAGTTGTGT+TGG + chr3_4:66676228-66676247 Msa0515440:intron 45.0%
! TTGAACCCTTTTTGCAGGTG+AGG + chr3_4:66676285-66676304 Msa0515440:intron 45.0%
ACCGATCTGGTCTAAGAGTT+TGG + chr3_4:66676640-66676659 Msa0515440:intron 45.0%
TTGTATGCCTCATCTCCTGT+GGG - chr3_4:66677071-66677090 None:intergenic 45.0%
ATTGTATGCCTCATCTCCTG+TGG - chr3_4:66677072-66677091 None:intergenic 45.0%
GACGGCATTGTTAGAGAAGA+TGG + chr3_4:66677290-66677309 Msa0515440:CDS 45.0%
TTCTTGAAGGAAGTGGCAAG+TGG + chr3_4:66677658-66677677 Msa0515440:intron 45.0%
TTGTAAACAAGCTGTAGCCC+AGG + chr3_4:66677775-66677794 Msa0515440:CDS 45.0%
! ATTTTATGAAAGGCCCGTGC+TGG + chr3_4:66677960-66677979 Msa0515440:intron 45.0%
!! GATATGATGGATGGTCGTGT+TGG + chr3_4:66678005-66678024 Msa0515440:CDS 45.0%
!!! CTGTTTTTGCCTGCATGCAT+TGG + chr3_4:66678136-66678155 Msa0515440:intron 45.0%
AAATGAACTCGCGTACCTGT+TGG - chr3_4:66678710-66678729 None:intergenic 45.0%
GAGTCCAATGCTTCCCTAAA+TGG - chr3_4:66678739-66678758 None:intergenic 45.0%
ACGTTGCCATATACTTGGTC+TGG + chr3_4:66678852-66678871 Msa0515440:intron 45.0%
GTTCAGCCAGACCAAGTATA+TGG - chr3_4:66678861-66678880 None:intergenic 45.0%
! AAAGCCTCTCTGTAGTTTGC+CGG - chr3_4:66678902-66678921 None:intergenic 45.0%
! GAGAGGCTTTGACTGAAATG+AGG + chr3_4:66678912-66678931 Msa0515440:CDS 45.0%
AGAACCTGGTATGCTGCAAT+TGG - chr3_4:66679126-66679145 None:intergenic 45.0%
CAGACCTTACAGATGGGTAA+GGG - chr3_4:66679597-66679616 None:intergenic 45.0%
GATGTTCCAGACCTTACAGA+TGG - chr3_4:66679604-66679623 None:intergenic 45.0%
TGACCCCCTTTATTCACAAC+AGG + chr3_4:66679846-66679865 Msa0515440:intron 45.0%
GAGTACTCGATGATTAAGGC+TGG + chr3_4:66679877-66679896 Msa0515440:CDS 45.0%
TACTCGATGATTAAGGCTGG+TGG + chr3_4:66679880-66679899 Msa0515440:CDS 45.0%
ACTCGATGATTAAGGCTGGT+GGG + chr3_4:66679881-66679900 Msa0515440:CDS 45.0%
TGTTAGGATGATGTCAGCAC+CGG - chr3_4:66679968-66679987 None:intergenic 45.0%
! CAAGCTGCGAGATTTTTGTG+TGG + chr3_4:66680000-66680019 Msa0515440:CDS 45.0%
! GTCAAATGCTTTGAGCTCTC+TGG - chr3_4:66680078-66680097 None:intergenic 45.0%
! GCTCAAAGCATTTGACAGTG+TGG + chr3_4:66680082-66680101 Msa0515440:three_prime_UTR 45.0%
!!! AAAAAAAAAAACATTTTTAA+AGG + chr3_4:66676577-66676596 Msa0515440:intron 5.0%
!!! AAAAAAAAAACATTTTTAAA+GGG + chr3_4:66676578-66676597 Msa0515440:intron 5.0%
!!! TTTAAAATAGATTAAATATT+TGG - chr3_4:66678819-66678838 None:intergenic 5.0%
CGTAATCGGAGATTGAAGCG+TGG - chr3_4:66675527-66675546 None:intergenic 50.0%
CACATTACCAGCGACAACAG+CGG - chr3_4:66675721-66675740 None:intergenic 50.0%
! TGTTGTCGCTGGTAATGTGC+CGG + chr3_4:66675722-66675741 Msa0515440:CDS 50.0%
CTCACAAGTGAAGTCACCAC+TGG - chr3_4:66675792-66675811 None:intergenic 50.0%
TACACATCGATCCGCGTTTC+AGG + chr3_4:66675952-66675971 Msa0515440:CDS 50.0%
! CCGAAAAAGCCGAGAGCATA+CGG - chr3_4:66676167-66676186 None:intergenic 50.0%
! CCGTATGCTCTCGGCTTTTT+CGG + chr3_4:66676164-66676183 Msa0515440:intron 50.0%
! AACCCTTTTTGCAGGTGAGG+AGG + chr3_4:66676288-66676307 Msa0515440:intron 50.0%
GTCCTCCTCACCTGCAAAAA+GGG - chr3_4:66676293-66676312 None:intergenic 50.0%
TGTCCTCCTCACCTGCAAAA+AGG - chr3_4:66676294-66676313 None:intergenic 50.0%
ATCCGGGCATAGCACCAATT+GGG - chr3_4:66676318-66676337 None:intergenic 50.0%
! TACAGGCTTGGTTGGAGACA+CGG + chr3_4:66676340-66676359 Msa0515440:CDS 50.0%
! GTTGCAAAAGCACGGGATGT+TGG + chr3_4:66676918-66676937 Msa0515440:CDS 50.0%
ATCTCCTGTGGGGGTCTAAA+GGG - chr3_4:66677060-66677079 None:intergenic 50.0%
TGTATGCCTCATCTCCTGTG+GGG - chr3_4:66677070-66677089 None:intergenic 50.0%
GACCATCCATCATATCGCTG+GGG - chr3_4:66678001-66678020 None:intergenic 50.0%
CGACCATCCATCATATCGCT+GGG - chr3_4:66678002-66678021 None:intergenic 50.0%
ACGACCATCCATCATATCGC+TGG - chr3_4:66678003-66678022 None:intergenic 50.0%
ACGCTACGGTTATTGGCGAA+AGG - chr3_4:66678476-66678495 None:intergenic 50.0%
GCAGCTACAAGATGCACTAG+AGG - chr3_4:66678506-66678525 None:intergenic 50.0%
! GCCGTTTATTGGTTGCCAAC+AGG + chr3_4:66678692-66678711 Msa0515440:intron 50.0%
! TGGCCCATTTAGGGAAGCAT+TGG + chr3_4:66678732-66678751 Msa0515440:CDS 50.0%
! TTGGACTCAAACCCCCGTTT+TGG + chr3_4:66678751-66678770 Msa0515440:CDS 50.0%
! AAGCCTCTCTGTAGTTTGCC+GGG - chr3_4:66678901-66678920 None:intergenic 50.0%
GAAGCCTGGGCTTCCTTATT+TGG + chr3_4:66679065-66679084 Msa0515440:CDS 50.0%
TGGTATGCTGCAATTGGCAG+CGG - chr3_4:66679120-66679139 None:intergenic 50.0%
CAGCATACCAGGTTCTTCTC+TGG + chr3_4:66679130-66679149 Msa0515440:intron 50.0%
!! CTCTGGCCCATTCTAGTTCT+TGG + chr3_4:66679147-66679166 Msa0515440:intron 50.0%
TTTATATCGAGCTGGGGCAC+AGG + chr3_4:66679195-66679214 Msa0515440:intron 50.0%
CCAGACCTTACAGATGGGTA+AGG - chr3_4:66679598-66679617 None:intergenic 50.0%
CCTTACCCATCTGTAAGGTC+TGG + chr3_4:66679595-66679614 Msa0515440:intron 50.0%
CTCGATGATTAAGGCTGGTG+GGG + chr3_4:66679882-66679901 Msa0515440:CDS 50.0%
TTACTGTGCCTTAGACGTGC+CGG + chr3_4:66679946-66679965 Msa0515440:CDS 50.0%
! TTTGAGCTCTCTGGCCTTCT+GGG - chr3_4:66680069-66680088 None:intergenic 50.0%
GAACAAGTACGCACGGGACA+TGG - chr3_4:66675396-66675415 None:intergenic 55.0%
!! ACCCCAATTGGTGCTATGCC+CGG + chr3_4:66676313-66676332 Msa0515440:CDS 55.0%
TCCGGGCATAGCACCAATTG+GGG - chr3_4:66676317-66676336 None:intergenic 55.0%
CATCCGGGCATAGCACCAAT+TGG - chr3_4:66676319-66676338 None:intergenic 55.0%
CAACCAAGCCTGTAGCATCC+GGG - chr3_4:66676334-66676353 None:intergenic 55.0%
CCAACCAAGCCTGTAGCATC+CGG - chr3_4:66676335-66676354 None:intergenic 55.0%
! GAGACACGGACTGTTGCAAG+AGG + chr3_4:66676354-66676373 Msa0515440:CDS 55.0%
TCTCCTGTGGGGGTCTAAAG+GGG - chr3_4:66677059-66677078 None:intergenic 55.0%
CATCTCCTGTGGGGGTCTAA+AGG - chr3_4:66677061-66677080 None:intergenic 55.0%
TTAGACCCCCACAGGAGATG+AGG + chr3_4:66677061-66677080 Msa0515440:intron 55.0%
GTATGCCTCATCTCCTGTGG+GGG - chr3_4:66677069-66677088 None:intergenic 55.0%
TGACCACATCTGCTCCAGCA+CGG - chr3_4:66677977-66677996 None:intergenic 55.0%
! AGCCCCAGCGATATGATGGA+TGG + chr3_4:66677996-66678015 Msa0515440:CDS 55.0%
GAACCCGGCAAACTACAGAG+AGG + chr3_4:66678895-66678914 Msa0515440:CDS 55.0%
TTGCATGTGCAGGTGAAGCC+TGG + chr3_4:66679051-66679070 Msa0515440:intron 55.0%
TGCATGTGCAGGTGAAGCCT+GGG + chr3_4:66679052-66679071 Msa0515440:intron 55.0%
GCTGCCAATTGCAGCATACC+AGG + chr3_4:66679119-66679138 Msa0515440:CDS 55.0%
GAATGGGCCAGAGAAGAACC+TGG - chr3_4:66679140-66679159 None:intergenic 55.0%
! GAGCTGGGGCACAGGTTTTA+TGG + chr3_4:66679203-66679222 Msa0515440:intron 55.0%
! GGGTAGGGTGTCAAGCATCA+TGG - chr3_4:66679738-66679757 None:intergenic 55.0%
! CTTTGAGCTCTCTGGCCTTC+TGG - chr3_4:66680070-66680089 None:intergenic 55.0%
TTCGAAGCCGCTGTTGTCGC+TGG + chr3_4:66675711-66675730 Msa0515440:CDS 60.0%
CGACGAGGACGCCTCTGAAT+TGG - chr3_4:66675917-66675936 None:intergenic 60.0%
GGTGAGGAGGACACCCCAAT+TGG + chr3_4:66676301-66676320 Msa0515440:intron 60.0%
GTGCTATGCCCGGATGCTAC+AGG + chr3_4:66676323-66676342 Msa0515440:CDS 60.0%
ATGCCCGGATGCTACAGGCT+TGG + chr3_4:66676328-66676347 Msa0515440:CDS 60.0%
! CCGGATGCTACAGGCTTGGT+TGG + chr3_4:66676332-66676351 Msa0515440:CDS 60.0%
TTCCCCCTTTAGACCCCCAC+AGG + chr3_4:66677053-66677072 Msa0515440:intron 60.0%
CTCCTGTGGGGGTCTAAAGG+GGG - chr3_4:66677058-66677077 None:intergenic 60.0%
GACCACATCTGCTCCAGCAC+GGG - chr3_4:66677976-66677995 None:intergenic 60.0%
GGTCAGCCCCAGCGATATGA+TGG + chr3_4:66677992-66678011 Msa0515440:CDS 60.0%
CGAGCAGCTCTCGATGCTGA+AGG + chr3_4:66678035-66678054 Msa0515440:CDS 60.0%
!! TGTCAGCACCGGCACGTCTA+AGG - chr3_4:66679957-66679976 None:intergenic 60.0%
GCCTCCTGTACCGCCTACAC+CGG + chr3_4:66675749-66675768 Msa0515440:CDS 65.0%
TGCACCTGCTGGAACGCCAG+TGG + chr3_4:66675773-66675792 Msa0515440:CDS 65.0%
GTCACCACTGGCGTTCCAGC+AGG - chr3_4:66675780-66675799 None:intergenic 65.0%
! GGCGGTACAGGAGGCGCATC+CGG - chr3_4:66675744-66675763 None:intergenic 70.0%
GCCGGTGTAGGCGGTACAGG+AGG - chr3_4:66675753-66675772 None:intergenic 70.0%
GCAGCCGGTGTAGGCGGTAC+AGG - chr3_4:66675756-66675775 None:intergenic 70.0%
GCAGGTGCAGCCGGTGTAGG+CGG - chr3_4:66675762-66675781 None:intergenic 70.0%
CCAGCAGGTGCAGCCGGTGT+AGG - chr3_4:66675765-66675784 None:intergenic 70.0%
! CCTACACCGGCTGCACCTGC+TGG + chr3_4:66675762-66675781 Msa0515440:CDS 70.0%
GGCGTTCCAGCAGGTGCAGC+CGG - chr3_4:66675771-66675790 None:intergenic 70.0%
GGCCCGTGCTGGAGCAGATG+TGG + chr3_4:66677971-66677990 Msa0515440:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 66675205 66680330 66675205 ID=Msa0515440;Name=Msa0515440
chr3_4 mRNA 66675205 66680330 66675205 ID=Msa0515440-mRNA-1;Parent=Msa0515440;Name=Msa0515440-mRNA-1;_AED=0.11;_eAED=0.11;_QI=327|1|1|1|0.91|0.84|13|295|413
chr3_4 exon 66675205 66675320 66675205 ID=Msa0515440-mRNA-1:exon:17171;Parent=Msa0515440-mRNA-1
chr3_4 exon 66675341 66675806 66675341 ID=Msa0515440-mRNA-1:exon:17172;Parent=Msa0515440-mRNA-1
chr3_4 exon 66675914 66676025 66675914 ID=Msa0515440-mRNA-1:exon:17173;Parent=Msa0515440-mRNA-1
chr3_4 exon 66676302 66676375 66676302 ID=Msa0515440-mRNA-1:exon:17174;Parent=Msa0515440-mRNA-1
chr3_4 exon 66676918 66676986 66676918 ID=Msa0515440-mRNA-1:exon:17175;Parent=Msa0515440-mRNA-1
chr3_4 exon 66677065 66677148 66677065 ID=Msa0515440-mRNA-1:exon:17176;Parent=Msa0515440-mRNA-1
chr3_4 exon 66677242 66677311 66677242 ID=Msa0515440-mRNA-1:exon:17177;Parent=Msa0515440-mRNA-1
chr3_4 exon 66677741 66677796 66677741 ID=Msa0515440-mRNA-1:exon:17178;Parent=Msa0515440-mRNA-1
chr3_4 exon 66677972 66678093 66677972 ID=Msa0515440-mRNA-1:exon:17179;Parent=Msa0515440-mRNA-1
chr3_4 exon 66678714 66678785 66678714 ID=Msa0515440-mRNA-1:exon:17180;Parent=Msa0515440-mRNA-1
chr3_4 exon 66678886 66678967 66678886 ID=Msa0515440-mRNA-1:exon:17181;Parent=Msa0515440-mRNA-1
chr3_4 exon 66679063 66679140 66679063 ID=Msa0515440-mRNA-1:exon:17182;Parent=Msa0515440-mRNA-1
chr3_4 exon 66679868 66680330 66679868 ID=Msa0515440-mRNA-1:exon:17183;Parent=Msa0515440-mRNA-1
chr3_4 five_prime_UTR 66675205 66675320 66675205 ID=Msa0515440-mRNA-1:five_prime_utr;Parent=Msa0515440-mRNA-1
chr3_4 five_prime_UTR 66675341 66675551 66675341 ID=Msa0515440-mRNA-1:five_prime_utr;Parent=Msa0515440-mRNA-1
chr3_4 CDS 66675552 66675806 66675552 ID=Msa0515440-mRNA-1:cds;Parent=Msa0515440-mRNA-1
chr3_4 CDS 66675914 66676025 66675914 ID=Msa0515440-mRNA-1:cds;Parent=Msa0515440-mRNA-1
chr3_4 CDS 66676302 66676375 66676302 ID=Msa0515440-mRNA-1:cds;Parent=Msa0515440-mRNA-1
chr3_4 CDS 66676918 66676986 66676918 ID=Msa0515440-mRNA-1:cds;Parent=Msa0515440-mRNA-1
chr3_4 CDS 66677065 66677148 66677065 ID=Msa0515440-mRNA-1:cds;Parent=Msa0515440-mRNA-1
chr3_4 CDS 66677242 66677311 66677242 ID=Msa0515440-mRNA-1:cds;Parent=Msa0515440-mRNA-1
chr3_4 CDS 66677741 66677796 66677741 ID=Msa0515440-mRNA-1:cds;Parent=Msa0515440-mRNA-1
chr3_4 CDS 66677972 66678093 66677972 ID=Msa0515440-mRNA-1:cds;Parent=Msa0515440-mRNA-1
chr3_4 CDS 66678714 66678785 66678714 ID=Msa0515440-mRNA-1:cds;Parent=Msa0515440-mRNA-1
chr3_4 CDS 66678886 66678967 66678886 ID=Msa0515440-mRNA-1:cds;Parent=Msa0515440-mRNA-1
chr3_4 CDS 66679063 66679140 66679063 ID=Msa0515440-mRNA-1:cds;Parent=Msa0515440-mRNA-1
chr3_4 CDS 66679868 66680035 66679868 ID=Msa0515440-mRNA-1:cds;Parent=Msa0515440-mRNA-1
chr3_4 three_prime_UTR 66680036 66680330 66680036 ID=Msa0515440-mRNA-1:three_prime_utr;Parent=Msa0515440-mRNA-1
Gene Sequence

>Msa0515440

ATGGCTTCTTCTTCAACAATTCCAAACACACCCTTAACCTTAAATTCACACACCAACGTTGATCTTAAACCAGCACTACCATTGAAGAACTATTTGAGCTTCTCTTTATCAAAGCGTCGACCTCCATGTCTTTTTACTGTCAGAGCTAGTGATGCAGATTTCGAAGCCGCTGTTGTCGCTGGTAATGTGCCGGATGCGCCTCCTGTACCGCCTACACCGGCTGCACCTGCTGGAACGCCAGTGGTGACTTCACTTCCAATTCAGAGGCGTCCTCGTCGTAATAGAAGATCAGCTACACATCGATCCGCGTTTCAGGAAACAACTTTATCACCTGCTAATTTTGTTTATCCACTTTTTATACATGAAGGTGAGGAGGACACCCCAATTGGTGCTATGCCCGGATGCTACAGGCTTGGTTGGAGACACGGACTGTTGCAAGAGGTTGCAAAAGCACGGGATGTTGGTGTTAACAGTGTTGTGCTCTTCCCCAAAATTCCAGATGCTTTGAAGACCCCCACAGGAGATGAGGCATACAATGAGAATGGCTTAGTGCCTCGAACTATACGATTACTTAAGAATAAATACCCTGATCTTGTTATTTATACAGATGTTGCATTAGACCCATATTCTTCAGATGGGCATGACGGCATTGTTAGAGAAGATGGAGTTATCATGAATGATGAGACTGTTCATCAGCTTTGTAAACAAGCTGTAGCCCAGGCCCGTGCTGGAGCAGATGTGGTCAGCCCCAGCGATATGATGGATGGTCGTGTTGGAGCAATGCGAGCAGCTCTCGATGCTGAAGGCTTTCAGCATGTTTCTATAATGTCATATACAGCAAAGTACGCGAGTTCATTTTATGGCCCATTTAGGGAAGCATTGGACTCAAACCCCCGTTTTGGAGATAAAAAGACCTATCAGATGAACCCGGCAAACTACAGAGAGGCTTTGACTGAAATGAGGGAAGATGAATCAGAAGGAGCTGATATTCTATTGGTGAAGCCTGGGCTTCCTTATTTGGATATCATAAGGCTACTCAGAGATAATTCTCCGCTGCCAATTGCAGCATACCAGGTTTCTGGTGAGTACTCGATGATTAAGGCTGGTGGGGCTCTTAAAATGATTGATGAAGAAAAGGTGATGATGGAGTCATTACTGTGCCTTAGACGTGCCGGTGCTGACATCATCCTAACATATTTTGCTCTACAAGCTGCGAGATTTTTGTGTGGAGAAAAAAGGTGA

Protein sequence

>Msa0515440

MASSSTIPNTPLTLNSHTNVDLKPALPLKNYLSFSLSKRRPPCLFTVRASDADFEAAVVAGNVPDAPPVPPTPAAPAGTPVVTSLPIQRRPRRNRRSATHRSAFQETTLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLLQEVAKARDVGVNSVVLFPKIPDALKTPTGDEAYNENGLVPRTIRLLKNKYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVAQARAGADVVSPSDMMDGRVGAMRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALTEMREDESEGADILLVKPGLPYLDIIRLLRDNSPLPIAAYQVSGEYSMIKAGGALKMIDEEKVMMESLLCLRRAGADIILTYFALQAARFLCGEKR*