Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612220 | XP_003608122.2 | 96.250 | 400 | 15 | 0 | 1 | 400 | 1 | 400 | 0.0 | 801 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612220 | sp|O49523|DSEL_ARATH | 53.283 | 396 | 177 | 5 | 4 | 392 | 19 | 413 | 2.29e-147 | 427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612220 | G7JPP4 | 96.250 | 400 | 15 | 0 | 1 | 400 | 1 | 400 | 0.0 | 801 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0612220 | Msa0695050 | 0.910584 | 1.591161e-82 | -8.615850e-47 |
| Msa0612220 | Msa0945370 | 0.979696 | 1.542047e-148 | -8.615850e-47 |
| Msa0612220 | Msa0964510 | 0.800552 | 1.366459e-48 | -8.615850e-47 |
| Msa0612220 | Msa0998780 | 0.819168 | 1.338032e-52 | -8.615850e-47 |
| Msa0612220 | Msa1048400 | 0.800575 | 1.351405e-48 | -8.615850e-47 |
| Msa0612220 | Msa1319010 | 0.828269 | 9.877597e-55 | -8.615850e-47 |
| Msa0612220 | Msa1430350 | 0.969697 | 1.663984e-130 | -8.615850e-47 |
| Msa0242830 | Msa0612220 | 0.803589 | 3.243187e-49 | -8.615850e-47 |
| Msa0594630 | Msa0612220 | 0.811488 | 6.826568e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612220 | MtrunA17_Chr4g0046011 | 96.250 | 400 | 15 | 0 | 1 | 400 | 1 | 400 | 0.0 | 801 |
| Msa0612220 | MtrunA17_Chr4g0046001 | 91.457 | 398 | 34 | 0 | 1 | 398 | 10 | 407 | 0.0 | 761 |
| Msa0612220 | MtrunA17_Chr2g0283561 | 61.616 | 396 | 144 | 4 | 3 | 392 | 38 | 431 | 7.53e-177 | 499 |
| Msa0612220 | MtrunA17_Chr4g0039301 | 39.310 | 435 | 220 | 10 | 1 | 400 | 97 | 522 | 2.12e-98 | 303 |
| Msa0612220 | MtrunA17_Chr4g0041311 | 40.441 | 408 | 201 | 7 | 7 | 383 | 31 | 427 | 1.70e-96 | 295 |
| Msa0612220 | MtrunA17_Chr7g0260671 | 38.005 | 421 | 224 | 7 | 4 | 393 | 74 | 488 | 3.86e-94 | 291 |
| Msa0612220 | MtrunA17_Chr7g0260681 | 36.544 | 353 | 193 | 6 | 4 | 331 | 74 | 420 | 9.08e-74 | 236 |
| Msa0612220 | MtrunA17_Chr7g0214711 | 39.249 | 293 | 145 | 8 | 4 | 288 | 105 | 372 | 7.04e-57 | 194 |
| Msa0612220 | MtrunA17_Chr7g0250611 | 34.688 | 369 | 192 | 14 | 3 | 345 | 74 | 419 | 1.47e-54 | 186 |
| Msa0612220 | MtrunA17_Chr5g0399641 | 33.075 | 387 | 195 | 12 | 4 | 350 | 135 | 497 | 6.51e-52 | 182 |
| Msa0612220 | MtrunA17_Chr4g0055691 | 34.109 | 387 | 184 | 13 | 3 | 350 | 128 | 482 | 1.18e-47 | 170 |
| Msa0612220 | MtrunA17_Chr7g0250561 | 31.750 | 400 | 201 | 15 | 4 | 349 | 69 | 450 | 2.50e-47 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612220 | AT4G18550.1 | 53.283 | 396 | 177 | 5 | 4 | 392 | 19 | 413 | 2.33e-148 | 427 |
| Msa0612220 | AT4G18550.2 | 53.283 | 396 | 177 | 5 | 4 | 392 | 36 | 430 | 2.38e-148 | 427 |
| Msa0612220 | AT1G06250.1 | 49.100 | 389 | 190 | 4 | 4 | 385 | 5 | 392 | 2.27e-135 | 394 |
| Msa0612220 | AT4G18550.3 | 52.595 | 289 | 130 | 4 | 4 | 290 | 36 | 319 | 6.44e-105 | 313 |
| Msa0612220 | AT1G51440.1 | 41.429 | 420 | 200 | 12 | 3 | 387 | 86 | 494 | 1.11e-93 | 291 |
| Msa0612220 | AT2G30550.2 | 39.573 | 422 | 211 | 12 | 7 | 393 | 104 | 516 | 4.44e-91 | 284 |
| Msa0612220 | AT1G06800.1 | 39.535 | 430 | 215 | 14 | 7 | 400 | 88 | 508 | 3.41e-90 | 281 |
| Msa0612220 | AT1G06250.2 | 49.640 | 278 | 133 | 3 | 115 | 385 | 1 | 278 | 1.02e-89 | 273 |
| Msa0612220 | AT2G42690.1 | 37.226 | 411 | 222 | 7 | 1 | 385 | 1 | 401 | 7.16e-81 | 254 |
| Msa0612220 | AT1G30370.1 | 35.961 | 406 | 220 | 11 | 4 | 383 | 114 | 505 | 7.62e-79 | 253 |
| Msa0612220 | AT2G30550.1 | 39.548 | 354 | 176 | 11 | 7 | 331 | 104 | 448 | 2.45e-74 | 239 |
| Msa0612220 | AT1G06800.2 | 39.888 | 356 | 175 | 13 | 7 | 332 | 88 | 434 | 7.08e-73 | 234 |
| Msa0612220 | AT2G31690.1 | 38.889 | 288 | 160 | 6 | 4 | 288 | 88 | 362 | 7.01e-58 | 196 |
| Msa0612220 | AT1G05800.1 | 35.165 | 364 | 194 | 10 | 4 | 346 | 80 | 422 | 1.59e-57 | 195 |
| Msa0612220 | AT2G44810.2 | 32.199 | 382 | 195 | 11 | 4 | 345 | 86 | 443 | 1.06e-51 | 179 |
| Msa0612220 | AT2G44810.1 | 32.181 | 376 | 191 | 11 | 10 | 345 | 2 | 353 | 3.76e-50 | 173 |
| Msa0612220 | AT4G16820.1 | 34.518 | 394 | 187 | 15 | 8 | 361 | 131 | 493 | 5.19e-49 | 174 |
Find 87 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGAGGGTGGTGGAGAATA+AGG | 0.186405 | 4_2:-60645039 | Msa0612220:CDS |
| TCCAAAGTATATTTGGAAAA+AGG | 0.200965 | 4_2:-60646981 | Msa0612220:CDS |
| TGTAACTGCACATTCGATTT+AGG | 0.218692 | 4_2:+60646495 | None:intergenic |
| TATGCAAGAAGAAGACTATT+TGG | 0.263873 | 4_2:+60645272 | None:intergenic |
| TAATTGTCGTTATTCTAAAA+AGG | 0.269491 | 4_2:-60647012 | Msa0612220:CDS |
| CGTAAGTACTTACTACATTA+TGG | 0.283055 | 4_2:-60647095 | Msa0612220:CDS |
| TAAAGGAGGGTTTAATTTAG+AGG | 0.288625 | 4_2:-60645132 | Msa0612220:CDS |
| TTAACAGCTAAGGAAGCATT+AGG | 0.303858 | 4_2:-60646618 | Msa0612220:intron |
| CCTGTCACATTATTTGCATT+TGG | 0.305993 | 4_2:-60645389 | Msa0612220:CDS |
| TTCAAAGGATGCTTGGAGTA+TGG | 0.306662 | 4_2:-60646871 | Msa0612220:CDS |
| CGCTGCACTATCTCTTGCTT+TGG | 0.312823 | 4_2:+60646914 | None:intergenic |
| AATCATGCGTTCTAAATTGT+AGG | 0.336214 | 4_2:-60644955 | None:intergenic |
| GTTTATTTGCATGGAATTGC+AGG | 0.337895 | 4_2:-60645167 | Msa0612220:CDS |
| CTTGGAGTATGGAAACAAAT+TGG | 0.350231 | 4_2:-60646860 | Msa0612220:CDS |
| CGTGTTGGAAATTCTAACTT+TGG | 0.360641 | 4_2:-60645359 | Msa0612220:CDS |
| AATATCACATTCCTGAGAAT+TGG | 0.362474 | 4_2:-60645058 | Msa0612220:CDS |
| CTAGCACTAGAATCAGCTAT+TGG | 0.371790 | 4_2:+60646429 | None:intergenic |
| TGCTTGGAGAGGGACAATTC+AGG | 0.376867 | 4_2:-60646577 | Msa0612220:CDS |
| GATCCTGCACCACTTATATT+CGG | 0.398511 | 4_2:-60646519 | Msa0612220:CDS |
| TGATGGTACTTGGAAGCTAA+TGG | 0.402739 | 4_2:-60645000 | Msa0612220:CDS |
| AATAAATTCAACATACCAAA+AGG | 0.412590 | 4_2:-60645431 | Msa0612220:CDS |
| AAGTAAGTGGAAAGGTCTAT+TGG | 0.420412 | 4_2:-60647138 | Msa0612220:CDS |
| ACTTGCAACTATAAGTTCTA+TGG | 0.425826 | 4_2:-60645465 | Msa0612220:CDS |
| GGATGTTGCATACAAATACT+TGG | 0.442993 | 4_2:+60646935 | None:intergenic |
| TTTGCTCAAGCTACATATGA+TGG | 0.446546 | 4_2:-60647068 | Msa0612220:CDS |
| TGATGGTTTCAACTTTGAAA+AGG | 0.449579 | 4_2:-60647051 | Msa0612220:CDS |
| TAACAGCTAAGGAAGCATTA+GGG | 0.450387 | 4_2:-60646617 | Msa0612220:intron |
| TGGAGGGTGGTGGAGAATAA+GGG | 0.455462 | 4_2:-60645038 | Msa0612220:CDS |
| TGATTCTAGTGCTAGAAAAC+AGG | 0.455743 | 4_2:-60646421 | Msa0612220:intron |
| TTCAACAATCTGATGGTACT+TGG | 0.456136 | 4_2:-60645010 | Msa0612220:CDS |
| AACATGGAGGTTTATTTGCA+TGG | 0.461774 | 4_2:-60645176 | Msa0612220:CDS |
| CTATTAAACAAAAGTAATGA+TGG | 0.464521 | 4_2:-60645092 | Msa0612220:CDS |
| AATCTAAGTACTTGAAGAGT+GGG | 0.469182 | 4_2:-60645211 | Msa0612220:CDS |
| AACTGTCGTTGGACACAGCT+TGG | 0.475044 | 4_2:-60645495 | Msa0612220:CDS |
| TCCACCACCCTCCAATTCTC+AGG | 0.477117 | 4_2:+60645047 | None:intergenic |
| TTGGTCACAGAATACTTGTA+AGG | 0.480981 | 4_2:+60646954 | None:intergenic |
| GGAGGGACATAGTTGTTGCT+TGG | 0.481190 | 4_2:-60646593 | Msa0612220:CDS |
| GCTTGGAGAGGGACAATTCA+GGG | 0.489035 | 4_2:-60646576 | Msa0612220:CDS |
| TGCATATTCAAAGGTGGGAG+AGG | 0.502064 | 4_2:-60645255 | Msa0612220:CDS |
| CTTCTTGCATATTCAAAGGT+GGG | 0.504433 | 4_2:-60645260 | Msa0612220:CDS |
| GAGTATGGAAACAAATTGGA+TGG | 0.512934 | 4_2:-60646856 | Msa0612220:CDS |
| ACTGTCGTTGGACACAGCTT+GGG | 0.515205 | 4_2:-60645494 | Msa0612220:CDS |
| GACAATTCAGGGTGCAGAGT+GGG | 0.520098 | 4_2:-60646565 | Msa0612220:CDS |
| GAAAAGGCATCTAAGTATGC+AGG | 0.523914 | 4_2:-60647035 | Msa0612220:CDS |
| GGACCGAATATAAGTGGTGC+AGG | 0.524592 | 4_2:+60646516 | None:intergenic |
| TCCTGAGAATTGGAGGGTGG+TGG | 0.527608 | 4_2:-60645048 | Msa0612220:CDS |
| CATGGAATTGCAGGAACACA+AGG | 0.532517 | 4_2:-60645158 | Msa0612220:CDS |
| ACATAGTTGTTGCTTGGAGA+GGG | 0.533659 | 4_2:-60646587 | Msa0612220:CDS |
| CTAAGGAAGCATTAGGGAGG+AGG | 0.534094 | 4_2:-60646611 | Msa0612220:CDS |
| AACTTAGTGGCAAAAGTAAG+TGG | 0.534655 | 4_2:-60647151 | Msa0612220:CDS |
| ATCACATTCCTGAGAATTGG+AGG | 0.536099 | 4_2:-60645055 | Msa0612220:CDS |
| GAAATTAGCATAACTGTCGT+TGG | 0.536154 | 4_2:-60645506 | Msa0612220:CDS |
| CCAAATGCAAATAATGTGAC+AGG | 0.536537 | 4_2:+60645389 | None:intergenic |
| TCTTCTTGCATATTCAAAGG+TGG | 0.538213 | 4_2:-60645261 | Msa0612220:CDS |
| GCAGGAACACAAGGAAGTAA+AGG | 0.539942 | 4_2:-60645149 | Msa0612220:CDS |
| GATTTAGGACCGAATATAAG+TGG | 0.540170 | 4_2:+60646510 | None:intergenic |
| TCTTCTTCTTGCATATTCAA+AGG | 0.541516 | 4_2:-60645264 | Msa0612220:CDS |
| AAACGAGATTAGCAGACTTG+TGG | 0.547519 | 4_2:-60645546 | Msa0612220:CDS |
| TGGGGTTAGTGCACATAACA+TGG | 0.566949 | 4_2:-60645192 | Msa0612220:CDS |
| AGTATGGAAACAAATTGGAT+GGG | 0.568664 | 4_2:-60646855 | Msa0612220:CDS |
| GCATTTGGTTCACCTCGTGT+TGG | 0.574021 | 4_2:-60645374 | Msa0612220:CDS |
| AAATCTAAGTACTTGAAGAG+TGG | 0.574558 | 4_2:-60645212 | Msa0612220:CDS |
| GACATAGTTGTTGCTTGGAG+AGG | 0.575425 | 4_2:-60646588 | Msa0612220:CDS |
| GTTGCTGTTGCCACTGATGA+AGG | 0.576148 | 4_2:-60646828 | Msa0612220:intron |
| TTCAACATTACCTTCATCAG+TGG | 0.579087 | 4_2:+60646818 | None:intergenic |
| ATAAATTCAACATACCAAAA+GGG | 0.580395 | 4_2:-60645430 | Msa0612220:CDS |
| GGTGGTGGAGAATAAGGGTA+TGG | 0.582115 | 4_2:-60645033 | Msa0612220:CDS |
| TAAGGAAGCATTAGGGAGGA+GGG | 0.586465 | 4_2:-60646610 | Msa0612220:CDS |
| TTACGTAGGTCAATGTGTAA+AGG | 0.596130 | 4_2:+60647113 | None:intergenic |
| GGAACACAAGGAAGTAAAGG+AGG | 0.618211 | 4_2:-60645146 | Msa0612220:CDS |
| GGTATGGTTCAACAATCTGA+TGG | 0.619750 | 4_2:-60645017 | Msa0612220:CDS |
| AGTGGCAAAAGTAAGTGGAA+AGG | 0.625837 | 4_2:-60647146 | Msa0612220:CDS |
| GTATGGAAACAAATTGGATG+GGG | 0.630148 | 4_2:-60646854 | Msa0612220:CDS |
| TCGAATGTGCAGTTACACAA+TGG | 0.630838 | 4_2:-60646489 | Msa0612220:CDS |
| TGGGTAGCATAGCAAGAACA+TGG | 0.635845 | 4_2:-60647178 | Msa0612220:CDS |
| GTCGTTGGACACAGCTTGGG+TGG | 0.639883 | 4_2:-60645491 | Msa0612220:CDS |
| AGAACATGGAGAGAACTTAG+TGG | 0.643312 | 4_2:-60647164 | Msa0612220:CDS |
| GAGGAATTAGAAATCGACGC+TGG | 0.655608 | 4_2:-60645236 | Msa0612220:CDS |
| TCACATTCCTGAGAATTGGA+GGG | 0.659641 | 4_2:-60645054 | Msa0612220:CDS |
| ATCTAAGTACTTGAAGAGTG+GGG | 0.675113 | 4_2:-60645210 | Msa0612220:CDS |
| AAGTTAGAATTTCCAACACG+AGG | 0.679774 | 4_2:+60645362 | None:intergenic |
| CATTCCTGAGAATTGGAGGG+TGG | 0.687333 | 4_2:-60645051 | Msa0612220:CDS |
| GAACACAAGGAAGTAAAGGA+GGG | 0.689646 | 4_2:-60645145 | Msa0612220:CDS |
| AATGTAGTAAGTACTTACGT+AGG | 0.694414 | 4_2:+60647099 | None:intergenic |
| CAGCTAAGGAAGCATTAGGG+AGG | 0.703114 | 4_2:-60646614 | Msa0612220:CDS |
| GGACAATTCAGGGTGCAGAG+TGG | 0.708525 | 4_2:-60646566 | Msa0612220:CDS |
| GGTTAGTGCACATAACATGG+AGG | 0.759022 | 4_2:-60645189 | Msa0612220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAAAATTTTAATATTGATT+TGG | - | chr4_2:60645594-60645613 | Msa0612220:intron | 10.0% |
| !!! | ATAGAAATCATTTTTTTTAA+AGG | - | chr4_2:60646207-60646226 | Msa0612220:intron | 10.0% |
| !!! | AAAAAAAGTATAACTTTTTT+TGG | - | chr4_2:60646314-60646333 | Msa0612220:intron | 10.0% |
| !!! | TTTAATTTTACTATGTATTT+AGG | + | chr4_2:60646360-60646379 | None:intergenic | 10.0% |
| !!! | TCAAAATTTTAATATTGATT+TGG | - | chr4_2:60645594-60645613 | Msa0612220:intron | 10.0% |
| !!! | ATAGAAATCATTTTTTTTAA+AGG | - | chr4_2:60646207-60646226 | Msa0612220:intron | 10.0% |
| !!! | AAAAAAAGTATAACTTTTTT+TGG | - | chr4_2:60646314-60646333 | Msa0612220:intron | 10.0% |
| !!! | TTTAATTTTACTATGTATTT+AGG | + | chr4_2:60646360-60646379 | None:intergenic | 10.0% |
| !!! | TAGAAATTCACTTTTTTTTA+AGG | + | chr4_2:60645997-60646016 | None:intergenic | 15.0% |
| !! | AACTTAATAAAGAAAACTTT+AGG | + | chr4_2:60646147-60646166 | None:intergenic | 15.0% |
| !!! | ATATTTATAGTACTTGATTT+TGG | - | chr4_2:60646519-60646538 | Msa0612220:CDS | 15.0% |
| !!! | TAGAAATTCACTTTTTTTTA+AGG | + | chr4_2:60645997-60646016 | None:intergenic | 15.0% |
| !! | AACTTAATAAAGAAAACTTT+AGG | + | chr4_2:60646147-60646166 | None:intergenic | 15.0% |
| !!! | ATATTTATAGTACTTGATTT+TGG | - | chr4_2:60646519-60646538 | Msa0612220:CDS | 15.0% |
| !!! | TAATTGTCGTTATTCTAAAA+AGG | - | chr4_2:60645123-60645142 | Msa0612220:CDS | 20.0% |
| !!! | TTTCTTTTCCAAAGTATATT+TGG | - | chr4_2:60645147-60645166 | Msa0612220:CDS | 20.0% |
| !!! | CTTAACTTCAATATTTTCAA+AGG | - | chr4_2:60645249-60645268 | Msa0612220:CDS | 20.0% |
| !! | TATTAGTAAAAGTTGTAAGT+TGG | + | chr4_2:60645482-60645501 | None:intergenic | 20.0% |
| !!! | TTAAACAATTTTAACAGCTA+AGG | - | chr4_2:60645507-60645526 | Msa0612220:CDS | 20.0% |
| !! | AGCATAACTTAATAATCTTA+AGG | + | chr4_2:60646243-60646262 | None:intergenic | 20.0% |
| !!! | GTTATACTTTTTTTTGAAGA+AGG | + | chr4_2:60646308-60646327 | None:intergenic | 20.0% |
| !!! | TACTATGTATTTAGGTTATA+GGG | + | chr4_2:60646352-60646371 | None:intergenic | 20.0% |
| !!! | TTACTATGTATTTAGGTTAT+AGG | + | chr4_2:60646353-60646372 | None:intergenic | 20.0% |
| !!! | ATTTAGCTTGAGATTTTTTT+TGG | + | chr4_2:60646478-60646497 | None:intergenic | 20.0% |
| !!! | GTTTTTTAACATTTGTAATG+TGG | - | chr4_2:60646550-60646569 | Msa0612220:CDS | 20.0% |
| !! | AATAAATTCAACATACCAAA+AGG | - | chr4_2:60646704-60646723 | Msa0612220:intron | 20.0% |
| !! | ATAAATTCAACATACCAAAA+GGG | - | chr4_2:60646705-60646724 | Msa0612220:intron | 20.0% |
| !! | CTATTAAACAAAAGTAATGA+TGG | - | chr4_2:60647043-60647062 | Msa0612220:CDS | 20.0% |
| !!! | TAATTGTCGTTATTCTAAAA+AGG | - | chr4_2:60645123-60645142 | Msa0612220:CDS | 20.0% |
| !!! | TTTCTTTTCCAAAGTATATT+TGG | - | chr4_2:60645147-60645166 | Msa0612220:CDS | 20.0% |
| !!! | CTTAACTTCAATATTTTCAA+AGG | - | chr4_2:60645249-60645268 | Msa0612220:CDS | 20.0% |
| !! | TATTAGTAAAAGTTGTAAGT+TGG | + | chr4_2:60645482-60645501 | None:intergenic | 20.0% |
| !!! | TTAAACAATTTTAACAGCTA+AGG | - | chr4_2:60645507-60645526 | Msa0612220:CDS | 20.0% |
| !! | AGCATAACTTAATAATCTTA+AGG | + | chr4_2:60646243-60646262 | None:intergenic | 20.0% |
| !!! | GTTATACTTTTTTTTGAAGA+AGG | + | chr4_2:60646308-60646327 | None:intergenic | 20.0% |
| !!! | TACTATGTATTTAGGTTATA+GGG | + | chr4_2:60646352-60646371 | None:intergenic | 20.0% |
| !!! | TTACTATGTATTTAGGTTAT+AGG | + | chr4_2:60646353-60646372 | None:intergenic | 20.0% |
| !!! | ATTTAGCTTGAGATTTTTTT+TGG | + | chr4_2:60646478-60646497 | None:intergenic | 20.0% |
| !!! | GTTTTTTAACATTTGTAATG+TGG | - | chr4_2:60646550-60646569 | Msa0612220:CDS | 20.0% |
| !! | AATAAATTCAACATACCAAA+AGG | - | chr4_2:60646704-60646723 | Msa0612220:intron | 20.0% |
| !! | ATAAATTCAACATACCAAAA+GGG | - | chr4_2:60646705-60646724 | Msa0612220:intron | 20.0% |
| !! | CTATTAAACAAAAGTAATGA+TGG | - | chr4_2:60647043-60647062 | Msa0612220:CDS | 20.0% |
| ! | TCCAAAGTATATTTGGAAAA+AGG | - | chr4_2:60645154-60645173 | Msa0612220:CDS | 25.0% |
| !! | ACCTTTTTCCAAATATACTT+TGG | + | chr4_2:60645158-60645177 | None:intergenic | 25.0% |
| ! | AAATTGAGCATAATAAGTGT+AGG | - | chr4_2:60645409-60645428 | Msa0612220:CDS | 25.0% |
| ! | AATTGAGCATAATAAGTGTA+GGG | - | chr4_2:60645410-60645429 | Msa0612220:CDS | 25.0% |
| ! | AGATTTATTGTAGTTTAGCT+AGG | + | chr4_2:60645454-60645473 | None:intergenic | 25.0% |
| ! | CTAATACTATGTAGCATTAT+CGG | + | chr4_2:60645768-60645787 | None:intergenic | 25.0% |
| ! | TTAAACGTTCTAGTATATGT+AGG | - | chr4_2:60645935-60645954 | Msa0612220:intron | 25.0% |
| ! | TAAACGTTCTAGTATATGTA+GGG | - | chr4_2:60645936-60645955 | Msa0612220:intron | 25.0% |
| !!! | TTTTTTTGTTAAGTAGCACA+TGG | + | chr4_2:60646021-60646040 | None:intergenic | 25.0% |
| !! | TACTTGAAGTATTATCTTAG+TGG | + | chr4_2:60646270-60646289 | None:intergenic | 25.0% |
| !! | ACTATGTATTTAGGTTATAG+GGG | + | chr4_2:60646351-60646370 | None:intergenic | 25.0% |
| !! | TTAAACAAATTTGAGACCTA+TGG | - | chr4_2:60646375-60646394 | Msa0612220:intron | 25.0% |
| ! | AGCAGAAAAAGTTTAGTTAA+AGG | + | chr4_2:60646421-60646440 | None:intergenic | 25.0% |
| !!! | TTTAACTAAACTTTTTCTGC+TGG | - | chr4_2:60646420-60646439 | Msa0612220:intron | 25.0% |
| ! | TTGTAATGTGGCATATATAA+AGG | - | chr4_2:60646562-60646581 | Msa0612220:CDS | 25.0% |
| ! | TCCAAAGTATATTTGGAAAA+AGG | - | chr4_2:60645154-60645173 | Msa0612220:CDS | 25.0% |
| !! | ACCTTTTTCCAAATATACTT+TGG | + | chr4_2:60645158-60645177 | None:intergenic | 25.0% |
| ! | AAATTGAGCATAATAAGTGT+AGG | - | chr4_2:60645409-60645428 | Msa0612220:CDS | 25.0% |
| ! | AATTGAGCATAATAAGTGTA+GGG | - | chr4_2:60645410-60645429 | Msa0612220:CDS | 25.0% |
| ! | AGATTTATTGTAGTTTAGCT+AGG | + | chr4_2:60645454-60645473 | None:intergenic | 25.0% |
| ! | CTAATACTATGTAGCATTAT+CGG | + | chr4_2:60645768-60645787 | None:intergenic | 25.0% |
| ! | TTAAACGTTCTAGTATATGT+AGG | - | chr4_2:60645935-60645954 | Msa0612220:intron | 25.0% |
| ! | TAAACGTTCTAGTATATGTA+GGG | - | chr4_2:60645936-60645955 | Msa0612220:intron | 25.0% |
| !!! | TTTTTTTGTTAAGTAGCACA+TGG | + | chr4_2:60646021-60646040 | None:intergenic | 25.0% |
| !! | TACTTGAAGTATTATCTTAG+TGG | + | chr4_2:60646270-60646289 | None:intergenic | 25.0% |
| !! | ACTATGTATTTAGGTTATAG+GGG | + | chr4_2:60646351-60646370 | None:intergenic | 25.0% |
| !! | TTAAACAAATTTGAGACCTA+TGG | - | chr4_2:60646375-60646394 | Msa0612220:intron | 25.0% |
| ! | AGCAGAAAAAGTTTAGTTAA+AGG | + | chr4_2:60646421-60646440 | None:intergenic | 25.0% |
| !!! | TTTAACTAAACTTTTTCTGC+TGG | - | chr4_2:60646420-60646439 | Msa0612220:intron | 25.0% |
| ! | TTGTAATGTGGCATATATAA+AGG | - | chr4_2:60646562-60646581 | Msa0612220:CDS | 25.0% |
| AATGTAGTAAGTACTTACGT+AGG | + | chr4_2:60645039-60645058 | None:intergenic | 30.0% | |
| CGTAAGTACTTACTACATTA+TGG | - | chr4_2:60645040-60645059 | Msa0612220:CDS | 30.0% | |
| ! | TGATGGTTTCAACTTTGAAA+AGG | - | chr4_2:60645084-60645103 | Msa0612220:CDS | 30.0% |
| ! | CAATATTTTCAAAGGATGCT+TGG | - | chr4_2:60645257-60645276 | Msa0612220:CDS | 30.0% |
| AGTATGGAAACAAATTGGAT+GGG | - | chr4_2:60645280-60645299 | Msa0612220:CDS | 30.0% | |
| GAAGGTAATGTTGAAAAGTA+TGG | - | chr4_2:60645325-60645344 | Msa0612220:CDS | 30.0% | |
| AAACGTTCTAGTATATGTAG+GGG | - | chr4_2:60645937-60645956 | Msa0612220:intron | 30.0% | |
| ACTTGCAACTATAAGTTCTA+TGG | - | chr4_2:60646670-60646689 | Msa0612220:intron | 30.0% | |
| TATGCAAGAAGAAGACTATT+TGG | + | chr4_2:60646866-60646885 | None:intergenic | 30.0% | |
| TCTTCTTCTTGCATATTCAA+AGG | - | chr4_2:60646871-60646890 | Msa0612220:CDS | 30.0% | |
| AAATCTAAGTACTTGAAGAG+TGG | - | chr4_2:60646923-60646942 | Msa0612220:CDS | 30.0% | |
| AATCTAAGTACTTGAAGAGT+GGG | - | chr4_2:60646924-60646943 | Msa0612220:CDS | 30.0% | |
| ! | TAAAGGAGGGTTTAATTTAG+AGG | - | chr4_2:60647003-60647022 | Msa0612220:CDS | 30.0% |
| AATATCACATTCCTGAGAAT+TGG | - | chr4_2:60647077-60647096 | Msa0612220:CDS | 30.0% | |
| AATGTAGTAAGTACTTACGT+AGG | + | chr4_2:60645039-60645058 | None:intergenic | 30.0% | |
| CGTAAGTACTTACTACATTA+TGG | - | chr4_2:60645040-60645059 | Msa0612220:CDS | 30.0% | |
| ! | TGATGGTTTCAACTTTGAAA+AGG | - | chr4_2:60645084-60645103 | Msa0612220:CDS | 30.0% |
| ! | CAATATTTTCAAAGGATGCT+TGG | - | chr4_2:60645257-60645276 | Msa0612220:CDS | 30.0% |
| AGTATGGAAACAAATTGGAT+GGG | - | chr4_2:60645280-60645299 | Msa0612220:CDS | 30.0% | |
| GAAGGTAATGTTGAAAAGTA+TGG | - | chr4_2:60645325-60645344 | Msa0612220:CDS | 30.0% | |
| AAACGTTCTAGTATATGTAG+GGG | - | chr4_2:60645937-60645956 | Msa0612220:intron | 30.0% | |
| ACTTGCAACTATAAGTTCTA+TGG | - | chr4_2:60646670-60646689 | Msa0612220:intron | 30.0% | |
| TATGCAAGAAGAAGACTATT+TGG | + | chr4_2:60646866-60646885 | None:intergenic | 30.0% | |
| TCTTCTTCTTGCATATTCAA+AGG | - | chr4_2:60646871-60646890 | Msa0612220:CDS | 30.0% | |
| AAATCTAAGTACTTGAAGAG+TGG | - | chr4_2:60646923-60646942 | Msa0612220:CDS | 30.0% | |
| AATCTAAGTACTTGAAGAGT+GGG | - | chr4_2:60646924-60646943 | Msa0612220:CDS | 30.0% | |
| ! | TAAAGGAGGGTTTAATTTAG+AGG | - | chr4_2:60647003-60647022 | Msa0612220:CDS | 30.0% |
| AATATCACATTCCTGAGAAT+TGG | - | chr4_2:60647077-60647096 | Msa0612220:CDS | 30.0% | |
| AACTTAGTGGCAAAAGTAAG+TGG | - | chr4_2:60644984-60645003 | Msa0612220:CDS | 35.0% | |
| AAGTAAGTGGAAAGGTCTAT+TGG | - | chr4_2:60644997-60645016 | Msa0612220:CDS | 35.0% | |
| TTACGTAGGTCAATGTGTAA+AGG | + | chr4_2:60645025-60645044 | None:intergenic | 35.0% | |
| TTTGCTCAAGCTACATATGA+TGG | - | chr4_2:60645067-60645086 | Msa0612220:CDS | 35.0% | |
| TTGGTCACAGAATACTTGTA+AGG | + | chr4_2:60645184-60645203 | None:intergenic | 35.0% | |
| GGATGTTGCATACAAATACT+TGG | + | chr4_2:60645203-60645222 | None:intergenic | 35.0% | |
| CTTGGAGTATGGAAACAAAT+TGG | - | chr4_2:60645275-60645294 | Msa0612220:CDS | 35.0% | |
| GAGTATGGAAACAAATTGGA+TGG | - | chr4_2:60645279-60645298 | Msa0612220:CDS | 35.0% | |
| GTATGGAAACAAATTGGATG+GGG | - | chr4_2:60645281-60645300 | Msa0612220:CDS | 35.0% | |
| TTCAACATTACCTTCATCAG+TGG | + | chr4_2:60645320-60645339 | None:intergenic | 35.0% | |
| !! | TTAACAGCTAAGGAAGCATT+AGG | - | chr4_2:60645517-60645536 | Msa0612220:CDS | 35.0% |
| !! | TAACAGCTAAGGAAGCATTA+GGG | - | chr4_2:60645518-60645537 | Msa0612220:CDS | 35.0% |
| ! | GATTTAGGACCGAATATAAG+TGG | + | chr4_2:60645628-60645647 | None:intergenic | 35.0% |
| TGTAACTGCACATTCGATTT+AGG | + | chr4_2:60645643-60645662 | None:intergenic | 35.0% | |
| TGATTCTAGTGCTAGAAAAC+AGG | - | chr4_2:60645714-60645733 | Msa0612220:intron | 35.0% | |
| AACGTTCTAGTATATGTAGG+GGG | - | chr4_2:60645938-60645957 | Msa0612220:intron | 35.0% | |
| GAAATTAGCATAACTGTCGT+TGG | - | chr4_2:60646629-60646648 | Msa0612220:intron | 35.0% | |
| CCAAATGCAAATAATGTGAC+AGG | + | chr4_2:60646749-60646768 | None:intergenic | 35.0% | |
| CCTGTCACATTATTTGCATT+TGG | - | chr4_2:60646746-60646765 | Msa0612220:intron | 35.0% | |
| AAGTTAGAATTTCCAACACG+AGG | + | chr4_2:60646776-60646795 | None:intergenic | 35.0% | |
| CGTGTTGGAAATTCTAACTT+TGG | - | chr4_2:60646776-60646795 | Msa0612220:intron | 35.0% | |
| TCTTCTTGCATATTCAAAGG+TGG | - | chr4_2:60646874-60646893 | Msa0612220:CDS | 35.0% | |
| CTTCTTGCATATTCAAAGGT+GGG | - | chr4_2:60646875-60646894 | Msa0612220:CDS | 35.0% | |
| ATCTAAGTACTTGAAGAGTG+GGG | - | chr4_2:60646925-60646944 | Msa0612220:CDS | 35.0% | |
| AACATGGAGGTTTATTTGCA+TGG | - | chr4_2:60646959-60646978 | Msa0612220:CDS | 35.0% | |
| GTTTATTTGCATGGAATTGC+AGG | - | chr4_2:60646968-60646987 | Msa0612220:CDS | 35.0% | |
| TTCAACAATCTGATGGTACT+TGG | - | chr4_2:60647125-60647144 | Msa0612220:CDS | 35.0% | |
| AACTTAGTGGCAAAAGTAAG+TGG | - | chr4_2:60644984-60645003 | Msa0612220:CDS | 35.0% | |
| AAGTAAGTGGAAAGGTCTAT+TGG | - | chr4_2:60644997-60645016 | Msa0612220:CDS | 35.0% | |
| TTACGTAGGTCAATGTGTAA+AGG | + | chr4_2:60645025-60645044 | None:intergenic | 35.0% | |
| TTTGCTCAAGCTACATATGA+TGG | - | chr4_2:60645067-60645086 | Msa0612220:CDS | 35.0% | |
| TTGGTCACAGAATACTTGTA+AGG | + | chr4_2:60645184-60645203 | None:intergenic | 35.0% | |
| GGATGTTGCATACAAATACT+TGG | + | chr4_2:60645203-60645222 | None:intergenic | 35.0% | |
| CTTGGAGTATGGAAACAAAT+TGG | - | chr4_2:60645275-60645294 | Msa0612220:CDS | 35.0% | |
| GAGTATGGAAACAAATTGGA+TGG | - | chr4_2:60645279-60645298 | Msa0612220:CDS | 35.0% | |
| GTATGGAAACAAATTGGATG+GGG | - | chr4_2:60645281-60645300 | Msa0612220:CDS | 35.0% | |
| TTCAACATTACCTTCATCAG+TGG | + | chr4_2:60645320-60645339 | None:intergenic | 35.0% | |
| !! | TTAACAGCTAAGGAAGCATT+AGG | - | chr4_2:60645517-60645536 | Msa0612220:CDS | 35.0% |
| !! | TAACAGCTAAGGAAGCATTA+GGG | - | chr4_2:60645518-60645537 | Msa0612220:CDS | 35.0% |
| ! | GATTTAGGACCGAATATAAG+TGG | + | chr4_2:60645628-60645647 | None:intergenic | 35.0% |
| TGTAACTGCACATTCGATTT+AGG | + | chr4_2:60645643-60645662 | None:intergenic | 35.0% | |
| TGATTCTAGTGCTAGAAAAC+AGG | - | chr4_2:60645714-60645733 | Msa0612220:intron | 35.0% | |
| AACGTTCTAGTATATGTAGG+GGG | - | chr4_2:60645938-60645957 | Msa0612220:intron | 35.0% | |
| GAAATTAGCATAACTGTCGT+TGG | - | chr4_2:60646629-60646648 | Msa0612220:intron | 35.0% | |
| CCAAATGCAAATAATGTGAC+AGG | + | chr4_2:60646749-60646768 | None:intergenic | 35.0% | |
| CCTGTCACATTATTTGCATT+TGG | - | chr4_2:60646746-60646765 | Msa0612220:intron | 35.0% | |
| AAGTTAGAATTTCCAACACG+AGG | + | chr4_2:60646776-60646795 | None:intergenic | 35.0% | |
| CGTGTTGGAAATTCTAACTT+TGG | - | chr4_2:60646776-60646795 | Msa0612220:intron | 35.0% | |
| TCTTCTTGCATATTCAAAGG+TGG | - | chr4_2:60646874-60646893 | Msa0612220:CDS | 35.0% | |
| CTTCTTGCATATTCAAAGGT+GGG | - | chr4_2:60646875-60646894 | Msa0612220:CDS | 35.0% | |
| ATCTAAGTACTTGAAGAGTG+GGG | - | chr4_2:60646925-60646944 | Msa0612220:CDS | 35.0% | |
| AACATGGAGGTTTATTTGCA+TGG | - | chr4_2:60646959-60646978 | Msa0612220:CDS | 35.0% | |
| GTTTATTTGCATGGAATTGC+AGG | - | chr4_2:60646968-60646987 | Msa0612220:CDS | 35.0% | |
| TTCAACAATCTGATGGTACT+TGG | - | chr4_2:60647125-60647144 | Msa0612220:CDS | 35.0% | |
| AGAACATGGAGAGAACTTAG+TGG | - | chr4_2:60644971-60644990 | Msa0612220:CDS | 40.0% | |
| AGTGGCAAAAGTAAGTGGAA+AGG | - | chr4_2:60644989-60645008 | Msa0612220:CDS | 40.0% | |
| !! | GAAAAGGCATCTAAGTATGC+AGG | - | chr4_2:60645100-60645119 | Msa0612220:CDS | 40.0% |
| TTCAAAGGATGCTTGGAGTA+TGG | - | chr4_2:60645264-60645283 | Msa0612220:CDS | 40.0% | |
| ! | ACATAGTTGTTGCTTGGAGA+GGG | - | chr4_2:60645548-60645567 | Msa0612220:CDS | 40.0% |
| GATCCTGCACCACTTATATT+CGG | - | chr4_2:60645616-60645635 | Msa0612220:intron | 40.0% | |
| TCGAATGTGCAGTTACACAA+TGG | - | chr4_2:60645646-60645665 | Msa0612220:intron | 40.0% | |
| CTAGCACTAGAATCAGCTAT+TGG | + | chr4_2:60645709-60645728 | None:intergenic | 40.0% | |
| TTCTAGTATATGTAGGGGGT+AGG | - | chr4_2:60645942-60645961 | Msa0612220:intron | 40.0% | |
| TCTAGTATATGTAGGGGGTA+GGG | - | chr4_2:60645943-60645962 | Msa0612220:intron | 40.0% | |
| GTCATTAAGGTAAGTGCCAT+AGG | + | chr4_2:60646394-60646413 | None:intergenic | 40.0% | |
| ATGGCACTTACCTTAATGAC+TGG | - | chr4_2:60646394-60646413 | Msa0612220:intron | 40.0% | |
| TGGCACTTACCTTAATGACT+GGG | - | chr4_2:60646395-60646414 | Msa0612220:intron | 40.0% | |
| AGTTAAAGGCCCAGTCATTA+AGG | + | chr4_2:60646407-60646426 | None:intergenic | 40.0% | |
| AAACGAGATTAGCAGACTTG+TGG | - | chr4_2:60646589-60646608 | Msa0612220:CDS | 40.0% | |
| GAACACAAGGAAGTAAAGGA+GGG | - | chr4_2:60646990-60647009 | Msa0612220:CDS | 40.0% | |
| ATCACATTCCTGAGAATTGG+AGG | - | chr4_2:60647080-60647099 | Msa0612220:CDS | 40.0% | |
| TCACATTCCTGAGAATTGGA+GGG | - | chr4_2:60647081-60647100 | Msa0612220:CDS | 40.0% | |
| GGTATGGTTCAACAATCTGA+TGG | - | chr4_2:60647118-60647137 | Msa0612220:CDS | 40.0% | |
| TGATGGTACTTGGAAGCTAA+TGG | - | chr4_2:60647135-60647154 | Msa0612220:CDS | 40.0% | |
| AGAACATGGAGAGAACTTAG+TGG | - | chr4_2:60644971-60644990 | Msa0612220:CDS | 40.0% | |
| AGTGGCAAAAGTAAGTGGAA+AGG | - | chr4_2:60644989-60645008 | Msa0612220:CDS | 40.0% | |
| !! | GAAAAGGCATCTAAGTATGC+AGG | - | chr4_2:60645100-60645119 | Msa0612220:CDS | 40.0% |
| TTCAAAGGATGCTTGGAGTA+TGG | - | chr4_2:60645264-60645283 | Msa0612220:CDS | 40.0% | |
| ! | ACATAGTTGTTGCTTGGAGA+GGG | - | chr4_2:60645548-60645567 | Msa0612220:CDS | 40.0% |
| GATCCTGCACCACTTATATT+CGG | - | chr4_2:60645616-60645635 | Msa0612220:intron | 40.0% | |
| TCGAATGTGCAGTTACACAA+TGG | - | chr4_2:60645646-60645665 | Msa0612220:intron | 40.0% | |
| CTAGCACTAGAATCAGCTAT+TGG | + | chr4_2:60645709-60645728 | None:intergenic | 40.0% | |
| TTCTAGTATATGTAGGGGGT+AGG | - | chr4_2:60645942-60645961 | Msa0612220:intron | 40.0% | |
| TCTAGTATATGTAGGGGGTA+GGG | - | chr4_2:60645943-60645962 | Msa0612220:intron | 40.0% | |
| GTCATTAAGGTAAGTGCCAT+AGG | + | chr4_2:60646394-60646413 | None:intergenic | 40.0% | |
| ATGGCACTTACCTTAATGAC+TGG | - | chr4_2:60646394-60646413 | Msa0612220:intron | 40.0% | |
| TGGCACTTACCTTAATGACT+GGG | - | chr4_2:60646395-60646414 | Msa0612220:intron | 40.0% | |
| AGTTAAAGGCCCAGTCATTA+AGG | + | chr4_2:60646407-60646426 | None:intergenic | 40.0% | |
| AAACGAGATTAGCAGACTTG+TGG | - | chr4_2:60646589-60646608 | Msa0612220:CDS | 40.0% | |
| GAACACAAGGAAGTAAAGGA+GGG | - | chr4_2:60646990-60647009 | Msa0612220:CDS | 40.0% | |
| ATCACATTCCTGAGAATTGG+AGG | - | chr4_2:60647080-60647099 | Msa0612220:CDS | 40.0% | |
| TCACATTCCTGAGAATTGGA+GGG | - | chr4_2:60647081-60647100 | Msa0612220:CDS | 40.0% | |
| GGTATGGTTCAACAATCTGA+TGG | - | chr4_2:60647118-60647137 | Msa0612220:CDS | 40.0% | |
| TGATGGTACTTGGAAGCTAA+TGG | - | chr4_2:60647135-60647154 | Msa0612220:CDS | 40.0% | |
| TGGGTAGCATAGCAAGAACA+TGG | - | chr4_2:60644957-60644976 | Msa0612220:CDS | 45.0% | |
| !! | TAAGGAAGCATTAGGGAGGA+GGG | - | chr4_2:60645525-60645544 | Msa0612220:CDS | 45.0% |
| ! | GACATAGTTGTTGCTTGGAG+AGG | - | chr4_2:60645547-60645566 | Msa0612220:CDS | 45.0% |
| CTAGTATATGTAGGGGGTAG+GGG | - | chr4_2:60645944-60645963 | Msa0612220:intron | 45.0% | |
| !!! | GCTTTTTGAGGTTGCCCTTT+TGG | + | chr4_2:60646722-60646741 | None:intergenic | 45.0% |
| !! | GTGACAGGACATGCTTTTTG+AGG | + | chr4_2:60646734-60646753 | None:intergenic | 45.0% |
| TGCATATTCAAAGGTGGGAG+AGG | - | chr4_2:60646880-60646899 | Msa0612220:CDS | 45.0% | |
| GAGGAATTAGAAATCGACGC+TGG | - | chr4_2:60646899-60646918 | Msa0612220:CDS | 45.0% | |
| ! | TGGGGTTAGTGCACATAACA+TGG | - | chr4_2:60646943-60646962 | Msa0612220:CDS | 45.0% |
| GGTTAGTGCACATAACATGG+AGG | - | chr4_2:60646946-60646965 | Msa0612220:CDS | 45.0% | |
| CATGGAATTGCAGGAACACA+AGG | - | chr4_2:60646977-60646996 | Msa0612220:CDS | 45.0% | |
| GCAGGAACACAAGGAAGTAA+AGG | - | chr4_2:60646986-60647005 | Msa0612220:CDS | 45.0% | |
| GGAACACAAGGAAGTAAAGG+AGG | - | chr4_2:60646989-60647008 | Msa0612220:CDS | 45.0% | |
| TGGGTAGCATAGCAAGAACA+TGG | - | chr4_2:60644957-60644976 | Msa0612220:CDS | 45.0% | |
| !! | TAAGGAAGCATTAGGGAGGA+GGG | - | chr4_2:60645525-60645544 | Msa0612220:CDS | 45.0% |
| ! | GACATAGTTGTTGCTTGGAG+AGG | - | chr4_2:60645547-60645566 | Msa0612220:CDS | 45.0% |
| CTAGTATATGTAGGGGGTAG+GGG | - | chr4_2:60645944-60645963 | Msa0612220:intron | 45.0% | |
| !!! | GCTTTTTGAGGTTGCCCTTT+TGG | + | chr4_2:60646722-60646741 | None:intergenic | 45.0% |
| !! | GTGACAGGACATGCTTTTTG+AGG | + | chr4_2:60646734-60646753 | None:intergenic | 45.0% |
| TGCATATTCAAAGGTGGGAG+AGG | - | chr4_2:60646880-60646899 | Msa0612220:CDS | 45.0% | |
| GAGGAATTAGAAATCGACGC+TGG | - | chr4_2:60646899-60646918 | Msa0612220:CDS | 45.0% | |
| ! | TGGGGTTAGTGCACATAACA+TGG | - | chr4_2:60646943-60646962 | Msa0612220:CDS | 45.0% |
| GGTTAGTGCACATAACATGG+AGG | - | chr4_2:60646946-60646965 | Msa0612220:CDS | 45.0% | |
| CATGGAATTGCAGGAACACA+AGG | - | chr4_2:60646977-60646996 | Msa0612220:CDS | 45.0% | |
| GCAGGAACACAAGGAAGTAA+AGG | - | chr4_2:60646986-60647005 | Msa0612220:CDS | 45.0% | |
| GGAACACAAGGAAGTAAAGG+AGG | - | chr4_2:60646989-60647008 | Msa0612220:CDS | 45.0% | |
| CGCTGCACTATCTCTTGCTT+TGG | + | chr4_2:60645224-60645243 | None:intergenic | 50.0% | |
| ! | GTTGCTGTTGCCACTGATGA+AGG | - | chr4_2:60645307-60645326 | Msa0612220:CDS | 50.0% |
| !! | CAGCTAAGGAAGCATTAGGG+AGG | - | chr4_2:60645521-60645540 | Msa0612220:CDS | 50.0% |
| !! | CTAAGGAAGCATTAGGGAGG+AGG | - | chr4_2:60645524-60645543 | Msa0612220:CDS | 50.0% |
| GGAGGGACATAGTTGTTGCT+TGG | - | chr4_2:60645542-60645561 | Msa0612220:CDS | 50.0% | |
| TGCTTGGAGAGGGACAATTC+AGG | - | chr4_2:60645558-60645577 | Msa0612220:intron | 50.0% | |
| GCTTGGAGAGGGACAATTCA+GGG | - | chr4_2:60645559-60645578 | Msa0612220:intron | 50.0% | |
| GACAATTCAGGGTGCAGAGT+GGG | - | chr4_2:60645570-60645589 | Msa0612220:intron | 50.0% | |
| GGACCGAATATAAGTGGTGC+AGG | + | chr4_2:60645622-60645641 | None:intergenic | 50.0% | |
| AACTGTCGTTGGACACAGCT+TGG | - | chr4_2:60646640-60646659 | Msa0612220:intron | 50.0% | |
| ACTGTCGTTGGACACAGCTT+GGG | - | chr4_2:60646641-60646660 | Msa0612220:intron | 50.0% | |
| ! | GCATTTGGTTCACCTCGTGT+TGG | - | chr4_2:60646761-60646780 | Msa0612220:intron | 50.0% |
| CATTCCTGAGAATTGGAGGG+TGG | - | chr4_2:60647084-60647103 | Msa0612220:CDS | 50.0% | |
| !! | TTGGAGGGTGGTGGAGAATA+AGG | - | chr4_2:60647096-60647115 | Msa0612220:CDS | 50.0% |
| !! | TGGAGGGTGGTGGAGAATAA+GGG | - | chr4_2:60647097-60647116 | Msa0612220:CDS | 50.0% |
| !! | GGTGGTGGAGAATAAGGGTA+TGG | - | chr4_2:60647102-60647121 | Msa0612220:CDS | 50.0% |
| CGCTGCACTATCTCTTGCTT+TGG | + | chr4_2:60645224-60645243 | None:intergenic | 50.0% | |
| ! | GTTGCTGTTGCCACTGATGA+AGG | - | chr4_2:60645307-60645326 | Msa0612220:CDS | 50.0% |
| !! | CAGCTAAGGAAGCATTAGGG+AGG | - | chr4_2:60645521-60645540 | Msa0612220:CDS | 50.0% |
| !! | CTAAGGAAGCATTAGGGAGG+AGG | - | chr4_2:60645524-60645543 | Msa0612220:CDS | 50.0% |
| GGAGGGACATAGTTGTTGCT+TGG | - | chr4_2:60645542-60645561 | Msa0612220:CDS | 50.0% | |
| TGCTTGGAGAGGGACAATTC+AGG | - | chr4_2:60645558-60645577 | Msa0612220:intron | 50.0% | |
| GCTTGGAGAGGGACAATTCA+GGG | - | chr4_2:60645559-60645578 | Msa0612220:intron | 50.0% | |
| GACAATTCAGGGTGCAGAGT+GGG | - | chr4_2:60645570-60645589 | Msa0612220:intron | 50.0% | |
| GGACCGAATATAAGTGGTGC+AGG | + | chr4_2:60645622-60645641 | None:intergenic | 50.0% | |
| AACTGTCGTTGGACACAGCT+TGG | - | chr4_2:60646640-60646659 | Msa0612220:intron | 50.0% | |
| ACTGTCGTTGGACACAGCTT+GGG | - | chr4_2:60646641-60646660 | Msa0612220:intron | 50.0% | |
| ! | GCATTTGGTTCACCTCGTGT+TGG | - | chr4_2:60646761-60646780 | Msa0612220:intron | 50.0% |
| CATTCCTGAGAATTGGAGGG+TGG | - | chr4_2:60647084-60647103 | Msa0612220:CDS | 50.0% | |
| !! | TTGGAGGGTGGTGGAGAATA+AGG | - | chr4_2:60647096-60647115 | Msa0612220:CDS | 50.0% |
| !! | TGGAGGGTGGTGGAGAATAA+GGG | - | chr4_2:60647097-60647116 | Msa0612220:CDS | 50.0% |
| !! | GGTGGTGGAGAATAAGGGTA+TGG | - | chr4_2:60647102-60647121 | Msa0612220:CDS | 50.0% |
| GGACAATTCAGGGTGCAGAG+TGG | - | chr4_2:60645569-60645588 | Msa0612220:intron | 55.0% | |
| TCCTGAGAATTGGAGGGTGG+TGG | - | chr4_2:60647087-60647106 | Msa0612220:CDS | 55.0% | |
| TCCACCACCCTCCAATTCTC+AGG | + | chr4_2:60647091-60647110 | None:intergenic | 55.0% | |
| GGACAATTCAGGGTGCAGAG+TGG | - | chr4_2:60645569-60645588 | Msa0612220:intron | 55.0% | |
| TCCTGAGAATTGGAGGGTGG+TGG | - | chr4_2:60647087-60647106 | Msa0612220:CDS | 55.0% | |
| TCCACCACCCTCCAATTCTC+AGG | + | chr4_2:60647091-60647110 | None:intergenic | 55.0% | |
| GTCGTTGGACACAGCTTGGG+TGG | - | chr4_2:60646644-60646663 | Msa0612220:intron | 60.0% | |
| GTCGTTGGACACAGCTTGGG+TGG | - | chr4_2:60646644-60646663 | Msa0612220:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 60644956 | 60647201 | 60644956 | ID=Msa0612220;Name=Msa0612220 |
| chr4_2 | mRNA | 60644956 | 60647201 | 60644956 | ID=Msa0612220-mRNA-1;Parent=Msa0612220;Name=Msa0612220-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|1|1|3|0|400 |
| chr4_2 | exon | 60646829 | 60647201 | 60646829 | ID=Msa0612220-mRNA-1:exon:16384;Parent=Msa0612220-mRNA-1 |
| chr4_2 | exon | 60646422 | 60646633 | 60646422 | ID=Msa0612220-mRNA-1:exon:16383;Parent=Msa0612220-mRNA-1 |
| chr4_2 | exon | 60644956 | 60645573 | 60644956 | ID=Msa0612220-mRNA-1:exon:16382;Parent=Msa0612220-mRNA-1 |
| chr4_2 | CDS | 60646829 | 60647201 | 60646829 | ID=Msa0612220-mRNA-1:cds;Parent=Msa0612220-mRNA-1 |
| chr4_2 | CDS | 60646422 | 60646633 | 60646422 | ID=Msa0612220-mRNA-1:cds;Parent=Msa0612220-mRNA-1 |
| chr4_2 | CDS | 60644956 | 60645573 | 60644956 | ID=Msa0612220-mRNA-1:cds;Parent=Msa0612220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
