AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1319010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1319010 MtrunA17_Chr8g0343981 94.678 357 19 0 1 357 1 357 0.0 703
Msa1319010 MtrunA17_Chr8g0343971 71.944 360 98 1 1 357 1 360 0.0 547
Msa1319010 MtrunA17_Chr8g0372671 62.810 363 128 2 1 357 1 362 2.05e-169 476
Msa1319010 MtrunA17_Chr3g0107591 61.892 370 125 4 1 356 1 368 4.25e-167 471
Msa1319010 MtrunA17_Chr4g0008111 63.056 360 129 2 1 357 1 359 1.81e-166 468
Msa1319010 MtrunA17_Chr6g0475241 61.064 357 137 2 1 356 1 356 2.21e-161 456
Msa1319010 MtrunA17_Chr5g0404631 58.333 372 139 3 1 357 11 381 8.99e-160 452
Msa1319010 MtrunA17_Chr8g0372821 58.667 375 128 3 1 355 1 368 3.05e-159 451
Msa1319010 MtrunA17_Chr6g0475221 57.459 362 139 4 1 356 1 353 8.59e-147 418
Msa1319010 MtrunA17_Chr3g0144871 41.645 377 192 4 1 357 1 369 7.92e-104 310
Msa1319010 MtrunA17_Chr5g0419851 40.997 361 206 2 1 355 61 420 1.41e-95 290
Msa1319010 MtrunA17_Chr3g0107871 39.535 344 190 4 25 355 2 340 1.05e-83 257
Msa1319010 MtrunA17_Chr7g0252361 36.856 369 211 5 3 355 1 363 2.81e-78 244
Msa1319010 MtrunA17_Chr8g0372801 66.667 132 44 0 90 221 31 162 8.36e-63 198
Msa1319010 MtrunA17_Chr3g0100101 32.620 374 229 8 1 354 10 380 6.06e-56 187
Msa1319010 MtrunA17_Chr1g0208641 35.185 324 180 9 45 356 61 366 8.43e-52 176
Msa1319010 MtrunA17_Chr5g0444921 31.169 385 226 11 1 354 13 389 1.29e-51 176
Msa1319010 MtrunA17_Chr1g0155451 41.148 209 109 3 161 356 9 216 6.56e-49 164
Msa1319010 MtrunA17_Chr7g0252501 36.364 198 109 3 168 355 38 228 4.65e-35 128
Msa1319010 MtrunA17_Chr1g0155491 45.614 171 83 3 1 161 1 171 4.81e-32 119
Msa1319010 MtrunA17_Chr1g0155461 40.741 162 86 3 1 152 1 162 8.62e-31 115
Msa1319010 MtrunA17_Chr6g0455071 43.333 120 57 2 137 250 11 125 8.94e-30 111
Msa1319010 MtrunA17_Chr3g0099281 35.503 169 101 4 1 161 13 181 1.61e-26 104
Msa1319010 MtrunA17_Chr7g0252341 42.308 130 69 4 35 161 6 132 5.64e-25 99.0
Msa1319010 MtrunA17_Chr1g0155481 47.423 97 44 2 156 246 4 99 1.06e-20 87.4
Msa1319010 MtrunA17_Chr3g0099271 28.571 210 131 6 161 354 2 208 5.21e-18 81.6
Msa1319010 MtrunA17_Chr1g0155471 35.593 118 66 2 247 356 9 124 3.90e-17 77.0
Msa1319010 MtrunA17_Chr6g0455081 29.921 127 72 2 245 357 8 131 1.30e-14 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1319010 AT4G36470.1 40.970 371 198 6 2 356 5 370 4.60e-90 275
Msa1319010 AT5G66430.1 39.554 359 201 4 9 356 1 354 9.89e-90 273
Msa1319010 AT5G04380.3 40.896 357 197 3 9 356 38 389 6.01e-89 273
Msa1319010 AT3G21950.1 41.398 372 191 7 6 356 3 368 1.15e-88 271
Msa1319010 AT3G11480.1 39.385 358 206 4 5 356 27 379 4.96e-88 270
Msa1319010 AT5G04370.1 41.408 355 196 4 9 356 41 390 4.97e-88 271
Msa1319010 AT1G19640.1 42.010 388 191 6 1 355 1 387 7.47e-88 270
Msa1319010 AT5G04370.3 41.408 355 196 4 9 356 46 395 1.03e-87 270
Msa1319010 AT5G04370.2 41.408 355 196 4 9 356 60 409 1.19e-87 270
Msa1319010 AT5G38020.1 40.541 370 197 6 6 356 3 368 5.43e-87 267
Msa1319010 AT5G04380.1 40.616 357 191 4 9 356 34 378 7.05e-85 262
Msa1319010 AT5G04380.2 41.905 315 170 2 50 356 9 318 1.24e-82 254
Msa1319010 AT2G14060.1 39.566 369 204 5 3 356 8 372 2.25e-82 255
Msa1319010 AT3G21950.2 37.562 402 196 7 6 356 3 400 7.05e-82 255
Msa1319010 AT5G38020.2 40.867 323 169 5 52 356 11 329 1.01e-77 242
Msa1319010 AT1G68040.1 35.262 363 208 7 9 356 13 363 7.27e-66 213
Msa1319010 AT2G14060.2 44.397 232 124 3 3 233 8 235 1.63e-62 200
Msa1319010 AT1G15125.1 36.036 333 190 9 9 331 1 320 1.90e-58 193
Msa1319010 AT5G37970.1 34.316 373 208 11 5 356 6 362 7.03e-52 176
Msa1319010 AT5G55250.1 31.805 349 216 8 1 330 13 358 9.63e-51 174
Msa1319010 AT5G37990.1 33.780 373 210 12 5 356 6 362 1.90e-50 172
Msa1319010 AT4G26420.1 31.638 354 207 11 3 331 7 350 5.26e-49 169
Msa1319010 AT5G56300.1 30.966 352 213 10 3 332 18 361 3.12e-47 165
Msa1319010 AT5G38100.1 33.138 341 196 10 9 333 10 334 1.23e-46 162
Msa1319010 AT3G44840.1 33.235 340 205 7 9 341 7 331 4.67e-46 160
Msa1319010 AT5G55250.2 33.219 292 175 7 56 330 32 320 3.42e-45 158
Msa1319010 AT5G38100.3 34.122 296 166 9 51 333 32 311 8.75e-45 157
Msa1319010 AT5G38780.1 31.195 343 202 9 9 333 10 336 1.94e-43 154
Msa1319010 AT3G44870.1 34.795 342 194 9 9 341 7 328 7.18e-43 153
Msa1319010 AT1G66700.1 31.118 331 201 7 9 328 9 323 2.35e-42 151
Msa1319010 AT1G66720.1 31.003 329 203 6 9 328 9 322 6.01e-42 150
Msa1319010 AT3G44860.1 34.195 348 191 11 9 341 7 331 7.45e-41 147
Msa1319010 AT5G38780.2 31.987 297 172 8 51 333 7 287 2.03e-40 145
Msa1319010 AT4G26420.3 37.004 227 123 7 3 218 7 224 5.90e-39 139
Msa1319010 AT1G15125.2 38.991 218 112 7 9 217 1 206 2.43e-38 137
Msa1319010 AT4G26420.2 37.104 221 119 7 9 218 1 212 8.62e-38 136
Msa1319010 AT1G66700.3 37.387 222 116 5 9 220 9 217 6.68e-35 129
Msa1319010 AT5G38100.4 39.091 220 106 8 9 213 10 216 3.24e-34 127
Msa1319010 AT5G38100.2 39.091 220 106 8 9 213 10 216 3.89e-34 126
Msa1319010 AT1G66690.1 30.514 331 203 7 9 328 9 323 1.11e-33 128

Find 67 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATGGCTTCATCTCTTAT+TGG 0.171047 8_4:+21152518 None:intergenic
AAATGAAATCAAAACTAAAA+TGG 0.175532 8_4:-21152267 Msa1319010:CDS
ATGGGTCCTTGTTACTTCTT+TGG 0.197736 8_4:-21152248 Msa1319010:CDS
TGTTACTTCTTTGGGGTTCC+TGG 0.212711 8_4:-21152239 Msa1319010:CDS
TAAAATATTGTTGCTACTAT+TGG 0.215282 8_4:-21151636 Msa1319010:CDS
TGGGTCCTTGTTACTTCTTT+GGG 0.234467 8_4:-21152247 Msa1319010:CDS
AGTCTTGCAATTGCAGATTT+AGG 0.234507 8_4:-21152467 Msa1319010:CDS
CAATGATATGATAACATTAA+TGG 0.254963 8_4:+21150679 None:intergenic
GCAGATTTAGGTTGTTCTTC+TGG 0.263073 8_4:-21152455 Msa1319010:CDS
TATAGGGAAATGCAGTTTCT+TGG 0.287192 8_4:-21152547 Msa1319010:intron
ATCTGCAATTGCAAGACTTC+TGG 0.289580 8_4:+21152472 None:intergenic
ATCATTTGCCATCAATCGTT+TGG 0.330535 8_4:-21150885 Msa1319010:CDS
TCTTAATGGCATGGTCTTAG+AGG 0.335242 8_4:-21151596 Msa1319010:intron
AAAATATTGTTGCTACTATT+GGG 0.341372 8_4:-21151635 Msa1319010:CDS
TCAATTTAAAAGAGACTTCT+CGG 0.358277 8_4:-21151749 Msa1319010:CDS
TTGTTTGAAGCGTATGTAGA+TGG 0.391779 8_4:-21150860 Msa1319010:CDS
GAGATGAATGGTTCAATTGT+TGG 0.392209 8_4:+21152378 None:intergenic
AAACAACTCCAAACGATTGA+TGG 0.396917 8_4:+21150877 None:intergenic
TATGCAACAGGGGATTATAA+AGG 0.406446 8_4:-21150987 Msa1319010:intron
AATGGCCTTCAGTTTCTCCT+TGG 0.406894 8_4:+21150697 None:intergenic
GTTGGAGTAGAGGCTTGTTA+TGG 0.407091 8_4:+21152502 None:intergenic
ATTCCTCTTACAGCCTTCAT+TGG 0.426219 8_4:-21152169 Msa1319010:CDS
ATGGCCTTCAGTTTCTCCTT+GGG 0.426553 8_4:+21150698 None:intergenic
TGGACCAAACACTTTGTTTG+TGG 0.427560 8_4:-21152435 Msa1319010:CDS
ACTTCCAACTCTACTTCATA+TGG 0.429360 8_4:+21150920 None:intergenic
AGCTGCTGTTCTTAATGGCA+TGG 0.438077 8_4:-21151605 Msa1319010:CDS
AATGAAATCAAAACTAAAAT+GGG 0.439241 8_4:-21152266 Msa1319010:CDS
TATGCTTTAACAACATTTGA+GGG 0.450868 8_4:+21151778 None:intergenic
ATGAAATGCAAACTTTGATC+AGG 0.468189 8_4:+21152194 None:intergenic
CCATTGGTAGTTAGCCACTT+TGG 0.476037 8_4:-21150779 Msa1319010:CDS
GATACCACAAACAAAGTGTT+TGG 0.483715 8_4:+21152431 None:intergenic
CAGCCTTCATTGGCTATCAA+AGG 0.487208 8_4:-21152159 Msa1319010:intron
ATCAGACATTATCATGGTTG+TGG 0.487720 8_4:-21152411 Msa1319010:CDS
TATGGAGATGGATAATATTG+AGG 0.497048 8_4:+21150938 None:intergenic
GAGAGCTATGGCTGAACCAT+TGG 0.503480 8_4:-21150795 Msa1319010:CDS
GTATGCTTTAACAACATTTG+AGG 0.517154 8_4:+21151777 None:intergenic
TGGAAAGTGTGTTGGAGTAG+AGG 0.518450 8_4:+21152492 None:intergenic
ATGGAGATGGATAATATTGA+GGG 0.519174 8_4:+21150939 None:intergenic
GGGTCCTTGTTACTTCTTTG+GGG 0.519835 8_4:-21152246 Msa1319010:CDS
ATCTCCATATGAAGTAGAGT+TGG 0.524694 8_4:-21150924 Msa1319010:CDS
GGGCAGGTAGTGCACATGAA+TGG 0.526022 8_4:-21153812 Msa1319010:CDS
TAGCCAATGAAGGCTGTAAG+AGG 0.535843 8_4:+21152166 None:intergenic
CGTGCAGAGGAACTAGTTGA+AGG 0.536965 8_4:-21151712 Msa1319010:CDS
AACTCTACTTCATATGGAGA+TGG 0.539469 8_4:+21150926 None:intergenic
GAGTTGGAAGTTCTCAATGA+AGG 0.547450 8_4:-21150908 Msa1319010:CDS
TAACCTTTGATAGCCAATGA+AGG 0.548055 8_4:+21152156 None:intergenic
TGTGGTATCAGACATTATCA+TGG 0.553329 8_4:-21152417 Msa1319010:CDS
TCTTGTACTCGGGAGATGAA+TGG 0.553449 8_4:+21152366 None:intergenic
GTGCAGAGGAACTAGTTGAA+GGG 0.554125 8_4:-21151711 Msa1319010:CDS
CTATTATATCTTCACCAAAG+TGG 0.556718 8_4:+21150765 None:intergenic
TCATGTGCACTACCTGCCCC+AGG 0.561033 8_4:+21153816 None:intergenic
TGTGTAGTTGATGTAAATGT+TGG 0.562245 8_4:+21151804 None:intergenic
TTATTGTTCTCTATACCCTC+CGG 0.563075 8_4:+21151829 None:intergenic
GTGCACATGAATGGAGGTGA+TGG 0.587528 8_4:-21153803 Msa1319010:CDS
TGCAGAGGAACTAGTTGAAG+GGG 0.594526 8_4:-21151710 Msa1319010:CDS
AAGACTTCTGGAAAGTGTGT+TGG 0.600725 8_4:+21152484 None:intergenic
GGGAATTATTAGGTTCCGGA+GGG 0.604890 8_4:-21151844 Msa1319010:intron
TGCATGGTTCTAACAATGAG+TGG 0.606537 8_4:-21151685 Msa1319010:CDS
CCAAAGTGGCTAACTACCAA+TGG 0.610594 8_4:+21150779 None:intergenic
CATAATTGATAAATTACCCA+AGG 0.614571 8_4:-21150714 Msa1319010:CDS
GGGGAATTATTAGGTTCCGG+AGG 0.634746 8_4:-21151845 Msa1319010:intron
CAGGTAGTGCACATGAATGG+AGG 0.640551 8_4:-21153809 Msa1319010:CDS
GGAACCCCAAAGAAGTAACA+AGG 0.641016 8_4:+21152242 None:intergenic
ATTACCCAAGGAGAAACTGA+AGG 0.647612 8_4:-21150702 Msa1319010:CDS
TGCACGATTAATGAGAGCTA+TGG 0.650401 8_4:-21150807 Msa1319010:CDS
ACTCTGTTATAGAAAGAACC+AGG 0.668917 8_4:+21152221 None:intergenic
GCAGAGGAACTAGTTGAAGG+GGG 0.710839 8_4:-21151709 Msa1319010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTACGTATAATTTT+TGG - chr8_4:21150769-21150788 Msa1319010:CDS 10.0%
!!! TAGTTTATTTTTTAAAACAA+TGG + chr8_4:21151228-21151247 None:intergenic 10.0%
!!! ATTTTTTAAAATTTCTCAAA+AGG - chr8_4:21151543-21151562 Msa1319010:intron 10.0%
!!! TCATTTTAAACATTTTATTT+TGG - chr8_4:21151620-21151639 Msa1319010:CDS 10.0%
!! AATTGATTAAATAATATCTA+AGG + chr8_4:21151724-21151743 None:intergenic 10.0%
!! TAGATATTATTTAATCAATT+AGG - chr8_4:21151724-21151743 Msa1319010:CDS 10.0%
!!! TAAAAAAAACATTTTTTCTT+TGG + chr8_4:21151757-21151776 None:intergenic 10.0%
!!! TGTAATGTTTTTTTTTTTTT+TGG + chr8_4:21152586-21152605 None:intergenic 10.0%
!!! TTGATTTTATTTGTTAATTA+TGG - chr8_4:21152619-21152638 Msa1319010:intron 10.0%
!!! TGATTTTATTTGTTAATTAT+GGG - chr8_4:21152620-21152639 Msa1319010:intron 10.0%
!!! ATTTATCAATTATGATTTTT+TGG + chr8_4:21153765-21153784 None:intergenic 10.0%
!! AATAGTTAATAAGGATAATT+TGG + chr8_4:21151361-21151380 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG - chr8_4:21151360-21151379 Msa1319010:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - chr8_4:21151384-21151403 Msa1319010:intron 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG - chr8_4:21151487-21151506 Msa1319010:intron 15.0%
!!! AATTAAAAAAACTTGTTTGA+AGG + chr8_4:21151870-21151889 None:intergenic 15.0%
!! TTTCTTTATTATGTTGATAT+AGG - chr8_4:21151921-21151940 Msa1319010:intron 15.0%
!! TTCTTTATTATGTTGATATA+GGG - chr8_4:21151922-21151941 Msa1319010:intron 15.0%
!! ATTAAAAAATATCTTGTACT+CGG + chr8_4:21152133-21152152 None:intergenic 15.0%
!!! ATATTTTTTAATGATGTTTC+AGG - chr8_4:21152141-21152160 Msa1319010:intron 15.0%
!! AAATGAAATCAAAACTAAAA+TGG - chr8_4:21152218-21152237 Msa1319010:CDS 15.0%
!! AATGAAATCAAAACTAAAAT+GGG - chr8_4:21152219-21152238 Msa1319010:CDS 15.0%
!!! GATTTTATTTGTTAATTATG+GGG - chr8_4:21152621-21152640 Msa1319010:intron 15.0%
!!! AACAATGATTGTAATTTTTT+AGG + chr8_4:21153343-21153362 None:intergenic 15.0%
!! TTTAAATTGAGATTGTCTAT+AGG - chr8_4:21151072-21151091 Msa1319010:intron 20.0%
!! GTTCTTAATGATATTATTGT+GGG + chr8_4:21151144-21151163 None:intergenic 20.0%
!! AGTTCTTAATGATATTATTG+TGG + chr8_4:21151145-21151164 None:intergenic 20.0%
!!! CATATTTAACGGTTTTAAAA+CGG - chr8_4:21151200-21151219 Msa1319010:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr8_4:21151370-21151389 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr8_4:21151447-21151466 Msa1319010:intron 20.0%
!!! AATAACATTAACTACCTTTT+TGG - chr8_4:21151585-21151604 Msa1319010:intron 20.0%
!! TTAAAAAATATCTTGTACTC+GGG + chr8_4:21152132-21152151 None:intergenic 20.0%
!! GAAACACAATATAAAATATG+AGG + chr8_4:21152364-21152383 None:intergenic 20.0%
!! TAAAATATTGTTGCTACTAT+TGG - chr8_4:21152849-21152868 Msa1319010:intron 20.0%
!! AAAATATTGTTGCTACTATT+GGG - chr8_4:21152850-21152869 Msa1319010:intron 20.0%
!! GAATGAAAAATAAAACAACT+TGG + chr8_4:21153016-21153035 None:intergenic 20.0%
!!! TTTTTCATTCCATAAAATGT+AGG - chr8_4:21153026-21153045 Msa1319010:intron 20.0%
!! AATCATTGTTGTCTTAATTT+AGG - chr8_4:21153353-21153372 Msa1319010:intron 20.0%
!! ATCATTGTTGTCTTAATTTA+GGG - chr8_4:21153354-21153373 Msa1319010:intron 20.0%
!! CAATGATATGATAACATTAA+TGG + chr8_4:21153809-21153828 None:intergenic 20.0%
!!! GTATAATTTTTGGAAGATGA+AGG - chr8_4:21150779-21150798 Msa1319010:CDS 25.0%
! AAGAACTATCTTTAATGGTA+TGG + chr8_4:21150814-21150833 None:intergenic 25.0%
!! GGATATGAGAAATTTGATTT+GGG - chr8_4:21150993-21151012 Msa1319010:intron 25.0%
!!! AGAAATTTGATTTGGGATTT+TGG - chr8_4:21151000-21151019 Msa1319010:intron 25.0%
!!! GAAATTTGATTTGGGATTTT+GGG - chr8_4:21151001-21151020 Msa1319010:intron 25.0%
! TTCTACGATTGCATATTTAA+CGG - chr8_4:21151189-21151208 Msa1319010:intron 25.0%
! AATGATTAAGAGAAAGAGAA+TGG - chr8_4:21151327-21151346 Msa1319010:intron 25.0%
! TACCAATTGAACTACATTTA+CGG + chr8_4:21152465-21152484 None:intergenic 25.0%
! GTTAATTATGGGGAATTATT+AGG - chr8_4:21152631-21152650 Msa1319010:intron 25.0%
! TATGCTTTAACAACATTTGA+GGG + chr8_4:21152710-21152729 None:intergenic 25.0%
! TCAATTTAAAAGAGACTTCT+CGG - chr8_4:21152736-21152755 Msa1319010:intron 25.0%
!! CAACAATATTTTATGTCACA+TGG + chr8_4:21152842-21152861 None:intergenic 25.0%
! ATATGTACAAATAGGAAGTT+GGG + chr8_4:21152990-21153009 None:intergenic 25.0%
! AATATGTACAAATAGGAAGT+TGG + chr8_4:21152991-21153010 None:intergenic 25.0%
!! TTAGGATTACCTACATTTTA+TGG + chr8_4:21153038-21153057 None:intergenic 25.0%
!! ATCGATTAAACCGATTTAAA+AGG - chr8_4:21153171-21153190 Msa1319010:intron 25.0%
!! AGTTCAATCACCTTTTAAAT+CGG + chr8_4:21153184-21153203 None:intergenic 25.0%
! TTGTTCAAAAACATACTCAA+CGG + chr8_4:21153268-21153287 None:intergenic 25.0%
!!! GGTTTCTTTGATTAGTTTTA+GGG - chr8_4:21153379-21153398 Msa1319010:intron 25.0%
!! ATATGATTTTTGTATGCAAC+AGG - chr8_4:21153486-21153505 Msa1319010:intron 25.0%
!! TATGATTTTTGTATGCAACA+GGG - chr8_4:21153487-21153506 Msa1319010:intron 25.0%
!!! CAATTATGATTTTTTGGTGA+CGG + chr8_4:21153759-21153778 None:intergenic 25.0%
! CATAATTGATAAATTACCCA+AGG - chr8_4:21153771-21153790 Msa1319010:CDS 25.0%
TGCAAAAAACTCATTTCATC+AGG - chr8_4:21150717-21150736 Msa1319010:CDS 30.0%
GGCAAAAGAACTATCTTTAA+TGG + chr8_4:21150819-21150838 None:intergenic 30.0%
! TAAAGATAGTTCTTTTGCCA+TGG - chr8_4:21150820-21150839 Msa1319010:CDS 30.0%
! CTTTTCATAACCAGAATAGA+TGG + chr8_4:21150856-21150875 None:intergenic 30.0%
GGGATATGAGAAATTTGATT+TGG - chr8_4:21150992-21151011 Msa1319010:intron 30.0%
!!! TTCATAATGAGTGTCGTTTT+AGG - chr8_4:21151279-21151298 Msa1319010:intron 30.0%
! GATTTTATGAGCAACCAAAA+AGG + chr8_4:21151602-21151621 None:intergenic 30.0%
!! TGATTTTAAGAGACAGAGAA+TGG - chr8_4:21151811-21151830 Msa1319010:CDS 30.0%
ATGAAATGCAAACTTTGATC+AGG + chr8_4:21152294-21152313 None:intergenic 30.0%
ACCAATTGAACTACATTTAC+GGG + chr8_4:21152464-21152483 None:intergenic 30.0%
TTCCAGGGATAATTTATACA+GGG - chr8_4:21152487-21152506 Msa1319010:CDS 30.0%
AGATTCACACATATTATGTG+TGG + chr8_4:21152545-21152564 None:intergenic 30.0%
! TGTGTAGTTGATGTAAATGT+TGG + chr8_4:21152684-21152703 None:intergenic 30.0%
GTATGCTTTAACAACATTTG+AGG + chr8_4:21152711-21152730 None:intergenic 30.0%
CTTGGTGAATATGTACAAAT+AGG + chr8_4:21152998-21153017 None:intergenic 30.0%
CAGCAATAGTTAAATGTTGT+TGG + chr8_4:21153221-21153240 None:intergenic 30.0%
CAACAACATTTAACTATTGC+TGG - chr8_4:21153219-21153238 Msa1319010:intron 30.0%
! TTGTTGTCTTAATTTAGGGT+CGG - chr8_4:21153358-21153377 Msa1319010:intron 30.0%
!!! CGGTTTCTTTGATTAGTTTT+AGG - chr8_4:21153378-21153397 Msa1319010:intron 30.0%
! ATGATTTTTGTATGCAACAG+GGG - chr8_4:21153488-21153507 Msa1319010:intron 30.0%
ATGGAGATGGATAATATTGA+GGG + chr8_4:21153549-21153568 None:intergenic 30.0%
TATGGAGATGGATAATATTG+AGG + chr8_4:21153550-21153569 None:intergenic 30.0%
CTATTATATCTTCACCAAAG+TGG + chr8_4:21153723-21153742 None:intergenic 30.0%
GGCGAATTTCTCGAATTTAA+AGG + chr8_4:21150890-21150909 None:intergenic 35.0%
!! TTTTGAACACTAGTTTCTCG+AGG + chr8_4:21150956-21150975 None:intergenic 35.0%
GACACTCATTATGAAACAGA+GGG + chr8_4:21151274-21151293 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG - chr8_4:21151409-21151428 Msa1319010:intron 35.0%
! TGTGCAGAGTATTAATTGGA+GGG - chr8_4:21151413-21151432 Msa1319010:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr8_4:21151477-21151496 Msa1319010:intron 35.0%
TATAGGGAAATGCAGTTTCT+TGG - chr8_4:21151938-21151957 Msa1319010:intron 35.0%
GTTATGGCTTCATCTCTTAT+TGG + chr8_4:21151970-21151989 None:intergenic 35.0%
AGTCTTGCAATTGCAGATTT+AGG - chr8_4:21152018-21152037 Msa1319010:intron 35.0%
! GATACCACAAACAAAGTGTT+TGG + chr8_4:21152057-21152076 None:intergenic 35.0%
TGTGGTATCAGACATTATCA+TGG - chr8_4:21152068-21152087 Msa1319010:intron 35.0%
ATCAGACATTATCATGGTTG+TGG - chr8_4:21152074-21152093 Msa1319010:intron 35.0%
GAGATGAATGGTTCAATTGT+TGG + chr8_4:21152110-21152129 None:intergenic 35.0%
ACTCTGTTATAGAAAGAACC+AGG + chr8_4:21152267-21152286 None:intergenic 35.0%
! TAACCTTTGATAGCCAATGA+AGG + chr8_4:21152332-21152351 None:intergenic 35.0%
TCCCGTAAATGTAGTTCAAT+TGG - chr8_4:21152460-21152479 Msa1319010:CDS 35.0%
CTTCCAGGGATAATTTATAC+AGG - chr8_4:21152486-21152505 Msa1319010:CDS 35.0%
TCCAGGGATAATTTATACAG+GGG - chr8_4:21152488-21152507 Msa1319010:CDS 35.0%
ATATTATGTGTGGAGAAGTG+GGG + chr8_4:21152535-21152554 None:intergenic 35.0%
CATATTATGTGTGGAGAAGT+GGG + chr8_4:21152536-21152555 None:intergenic 35.0%
ACATATTATGTGTGGAGAAG+TGG + chr8_4:21152537-21152556 None:intergenic 35.0%
TATGGGGAATTATTAGGTTC+CGG - chr8_4:21152637-21152656 Msa1319010:intron 35.0%
TTATTGTTCTCTATACCCTC+CGG + chr8_4:21152659-21152678 None:intergenic 35.0%
!! CTTTTAGCTGCTGTTCTTAA+TGG - chr8_4:21152875-21152894 Msa1319010:intron 35.0%
!!! TGAGCAACTGTTCACTTTTT+AGG + chr8_4:21153056-21153075 None:intergenic 35.0%
TTGCTCAAAAACATACCCAA+AGG - chr8_4:21153090-21153109 Msa1319010:intron 35.0%
TACTCAACGGCAATTAATTG+TGG + chr8_4:21153255-21153274 None:intergenic 35.0%
TATGCAACAGGGGATTATAA+AGG - chr8_4:21153498-21153517 Msa1319010:intron 35.0%
AACTCTACTTCATATGGAGA+TGG + chr8_4:21153562-21153581 None:intergenic 35.0%
ATCTCCATATGAAGTAGAGT+TGG - chr8_4:21153561-21153580 Msa1319010:intron 35.0%
ACTTCCAACTCTACTTCATA+TGG + chr8_4:21153568-21153587 None:intergenic 35.0%
ATCATTTGCCATCAATCGTT+TGG - chr8_4:21153600-21153619 Msa1319010:intron 35.0%
AAACAACTCCAAACGATTGA+TGG + chr8_4:21153611-21153630 None:intergenic 35.0%
! TTGTTTGAAGCGTATGTAGA+TGG - chr8_4:21153625-21153644 Msa1319010:intron 35.0%
CAGGTATGTGTGTGTGTATA+AGG - chr8_4:21150736-21150755 Msa1319010:CDS 40.0%
ATGCATTGAGCCATCTATTC+TGG - chr8_4:21150843-21150862 Msa1319010:CDS 40.0%
CGACACTCATTATGAAACAG+AGG + chr8_4:21151275-21151294 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG - chr8_4:21151412-21151431 Msa1319010:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr8_4:21151517-21151536 Msa1319010:intron 40.0%
! AAGACTTCTGGAAAGTGTGT+TGG + chr8_4:21152004-21152023 None:intergenic 40.0%
ATCTGCAATTGCAAGACTTC+TGG + chr8_4:21152016-21152035 None:intergenic 40.0%
!! GCAGATTTAGGTTGTTCTTC+TGG - chr8_4:21152030-21152049 Msa1319010:intron 40.0%
! TGGACCAAACACTTTGTTTG+TGG - chr8_4:21152050-21152069 Msa1319010:intron 40.0%
! ATGGGTCCTTGTTACTTCTT+TGG - chr8_4:21152237-21152256 Msa1319010:CDS 40.0%
! TGGGTCCTTGTTACTTCTTT+GGG - chr8_4:21152238-21152257 Msa1319010:CDS 40.0%
ATTCCTCTTACAGCCTTCAT+TGG - chr8_4:21152316-21152335 Msa1319010:CDS 40.0%
! TAGTTCAATTGGTAGCTTCC+AGG - chr8_4:21152471-21152490 Msa1319010:CDS 40.0%
! AGTTCAATTGGTAGCTTCCA+GGG - chr8_4:21152472-21152491 Msa1319010:CDS 40.0%
GATAATTTATACAGGGGCCA+GGG - chr8_4:21152494-21152513 Msa1319010:CDS 40.0%
TATGTGTGAATCTAGCCACT+AGG - chr8_4:21152552-21152571 Msa1319010:intron 40.0%
!! TTTTTGGTCATGTAGCCTAG+TGG + chr8_4:21152570-21152589 None:intergenic 40.0%
!! TTTTCTCAAGTATCGTGCAG+AGG - chr8_4:21152760-21152779 Msa1319010:intron 40.0%
!! TGCATGGTTCTAACAATGAG+TGG - chr8_4:21152800-21152819 Msa1319010:intron 40.0%
! TCTTAATGGCATGGTCTTAG+AGG - chr8_4:21152889-21152908 Msa1319010:intron 40.0%
GAGTTGGAAGTTCTCAATGA+AGG - chr8_4:21153577-21153596 Msa1319010:intron 40.0%
TGCACGATTAATGAGAGCTA+TGG - chr8_4:21153678-21153697 Msa1319010:intron 40.0%
ATTACCCAAGGAGAAACTGA+AGG - chr8_4:21153783-21153802 Msa1319010:CDS 40.0%
TAGATGGCTCAATGCATCCA+TGG + chr8_4:21150840-21150859 None:intergenic 45.0%
AAAACCCGACACTGAGAGAA+GGG - chr8_4:21150972-21150991 Msa1319010:CDS 45.0%
ATATCCCTTCTCTCAGTGTC+GGG + chr8_4:21150979-21150998 None:intergenic 45.0%
CATATCCCTTCTCTCAGTGT+CGG + chr8_4:21150980-21150999 None:intergenic 45.0%
CTATAGGCTATAGCATCTGC+TGG - chr8_4:21151088-21151107 Msa1319010:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr8_4:21151516-21151535 Msa1319010:intron 45.0%
!! GTTGGAGTAGAGGCTTGTTA+TGG + chr8_4:21151986-21152005 None:intergenic 45.0%
! TGGAAAGTGTGTTGGAGTAG+AGG + chr8_4:21151996-21152015 None:intergenic 45.0%
TCTTGTACTCGGGAGATGAA+TGG + chr8_4:21152122-21152141 None:intergenic 45.0%
! GGGTCCTTGTTACTTCTTTG+GGG - chr8_4:21152239-21152258 Msa1319010:CDS 45.0%
GGAACCCCAAAGAAGTAACA+AGG + chr8_4:21152246-21152265 None:intergenic 45.0%
!! TGTTACTTCTTTGGGGTTCC+TGG - chr8_4:21152246-21152265 Msa1319010:CDS 45.0%
TAGCCAATGAAGGCTGTAAG+AGG + chr8_4:21152322-21152341 None:intergenic 45.0%
! CAGCCTTCATTGGCTATCAA+AGG - chr8_4:21152326-21152345 Msa1319010:CDS 45.0%
GCCCCTGTATAAATTATCCC+TGG + chr8_4:21152492-21152511 None:intergenic 45.0%
GGATAATTTATACAGGGGCC+AGG - chr8_4:21152493-21152512 Msa1319010:CDS 45.0%
GGGAATTATTAGGTTCCGGA+GGG - chr8_4:21152641-21152660 Msa1319010:intron 45.0%
GTGCAGAGGAACTAGTTGAA+GGG - chr8_4:21152774-21152793 Msa1319010:intron 45.0%
TGCAGAGGAACTAGTTGAAG+GGG - chr8_4:21152775-21152794 Msa1319010:intron 45.0%
AGCTGCTGTTCTTAATGGCA+TGG - chr8_4:21152880-21152899 Msa1319010:intron 45.0%
CTAACGTTGGAAAAGCAGAG+CGG + chr8_4:21153126-21153145 None:intergenic 45.0%
CAACGACAGCTAACTAACGT+TGG + chr8_4:21153139-21153158 None:intergenic 45.0%
CAACGTTAGTTAGCTGTCGT+TGG - chr8_4:21153137-21153156 Msa1319010:intron 45.0%
CCAAAGTGGCTAACTACCAA+TGG + chr8_4:21153709-21153728 None:intergenic 45.0%
! CCATTGGTAGTTAGCCACTT+TGG - chr8_4:21153706-21153725 Msa1319010:intron 45.0%
ATGGCCTTCAGTTTCTCCTT+GGG + chr8_4:21153790-21153809 None:intergenic 45.0%
AATGGCCTTCAGTTTCTCCT+TGG + chr8_4:21153791-21153810 None:intergenic 45.0%
!!! ACTTTTTTATTTTTTAAAAA+AGG - chr8_4:21151162-21151181 Msa1319010:intron 5.0%
CAGGTAGTGCACATGAATGG+AGG - chr8_4:21150676-21150695 Msa1319010:CDS 50.0%
GTGCACATGAATGGAGGTGA+TGG - chr8_4:21150682-21150701 Msa1319010:CDS 50.0%
TCTCAACCAAGTGACCTCTC+GGG + chr8_4:21150919-21150938 None:intergenic 50.0%
CTCTCAACCAAGTGACCTCT+CGG + chr8_4:21150920-21150939 None:intergenic 50.0%
CAAAACCCGACACTGAGAGA+AGG - chr8_4:21150971-21150990 Msa1319010:CDS 50.0%
GGGGAATTATTAGGTTCCGG+AGG - chr8_4:21152640-21152659 Msa1319010:intron 50.0%
CGTGCAGAGGAACTAGTTGA+AGG - chr8_4:21152773-21152792 Msa1319010:intron 50.0%
GCAGAGGAACTAGTTGAAGG+GGG - chr8_4:21152776-21152795 Msa1319010:intron 50.0%
ACTAGTTGAAGGGGGTTGCA+TGG - chr8_4:21152784-21152803 Msa1319010:intron 50.0%
AGCGGCAGCTAATTGCCTTT+GGG + chr8_4:21153108-21153127 None:intergenic 50.0%
GAGAGCTATGGCTGAACCAT+TGG - chr8_4:21153690-21153709 Msa1319010:intron 50.0%
GGGCAGGTAGTGCACATGAA+TGG - chr8_4:21150673-21150692 Msa1319010:CDS 55.0%
AAGTGACCTCTCGGGAGACT+GGG + chr8_4:21150911-21150930 None:intergenic 55.0%
TGTGGAGAAGTGGGGAATCC+GGG + chr8_4:21152527-21152546 None:intergenic 55.0%
GTGTGGAGAAGTGGGGAATC+CGG + chr8_4:21152528-21152547 None:intergenic 55.0%
GAGCGGCAGCTAATTGCCTT+TGG + chr8_4:21153109-21153128 None:intergenic 55.0%
TCATGTGCACTACCTGCCCC+AGG + chr8_4:21150672-21150691 None:intergenic 60.0%
AATTCGCCCAGTCTCCCGAG+AGG - chr8_4:21150902-21150921 Msa1319010:CDS 60.0%
CAAGTGACCTCTCGGGAGAC+TGG + chr8_4:21150912-21150931 None:intergenic 60.0%
CAGTCTCCCGAGAGGTCACT+TGG - chr8_4:21150910-21150929 Msa1319010:CDS 60.0%
GTGGAGAAGTGGGGAATCCG+GGG + chr8_4:21152526-21152545 None:intergenic 60.0%
GGAATCCGGGGTTCGAACCC+TGG + chr8_4:21152514-21152533 None:intergenic 65.0%
AGGGGCCAGGGTTCGAACCC+CGG - chr8_4:21152506-21152525 Msa1319010:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 21150664 21153843 21150664 ID=Msa1319010;Name=Msa1319010
chr8_4 mRNA 21150664 21153843 21150664 ID=Msa1319010-mRNA-1;Parent=Msa1319010;Name=Msa1319010-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|1|1|1|4|0|357
chr8_4 exon 21153769 21153843 21153769 ID=Msa1319010-mRNA-1:exon:7708;Parent=Msa1319010-mRNA-1
chr8_4 exon 21152160 21152564 21152160 ID=Msa1319010-mRNA-1:exon:7707;Parent=Msa1319010-mRNA-1
chr8_4 exon 21151597 21151854 21151597 ID=Msa1319010-mRNA-1:exon:7706;Parent=Msa1319010-mRNA-1
chr8_4 exon 21150664 21150999 21150664 ID=Msa1319010-mRNA-1:exon:7705;Parent=Msa1319010-mRNA-1
chr8_4 CDS 21153769 21153843 21153769 ID=Msa1319010-mRNA-1:cds;Parent=Msa1319010-mRNA-1
chr8_4 CDS 21152160 21152564 21152160 ID=Msa1319010-mRNA-1:cds;Parent=Msa1319010-mRNA-1
chr8_4 CDS 21151597 21151854 21151597 ID=Msa1319010-mRNA-1:cds;Parent=Msa1319010-mRNA-1
chr8_4 CDS 21150664 21150999 21150664 ID=Msa1319010-mRNA-1:cds;Parent=Msa1319010-mRNA-1
Gene Sequence

>Msa1319010

ATGGACCTGGGGCAGGTAGTGCACATGAATGGAGGTGATGGAGAAACAAGTTATGCAAAAAACTCATTTCATCAGGGAAATGCAGTTTCTTGGACAAAGCCAATAAGAGATGAAGCCATAACAAGCCTCTACTCCAACACACTTTCCAGAAGTCTTGCAATTGCAGATTTAGGTTGTTCTTCTGGACCAAACACTTTGTTTGTGGTATCAGACATTATCATGGTTGTGGAGAATCTTTGCCAACAATTGAACCATTCATCTCCCGAGTACAAGATATTTTTTAATGATGTTTCAGGAAATGATTTCAACAACATATTTAAGTCACTTGACAACTTTAAAGAGAAATTGCAAAATGAAATCAAAACTAAAATGGGTCCTTGTTACTTCTTTGGGGTTCCTGGTTCTTTCTATAACAGAGTTTTTCCTGATCAAAGTTTGCATTTCATTCATTCCTCTTACAGCCTTCATTGGCTATCAAAGGTTCCGGAGGGTATAGAGAACAATAAGACCAACATTTACATCAACTACACAAGTCCCTCAAATGTTGTTAAAGCATACTATGATCAATTTAAAAGAGACTTCTCGGTTTTTCTCAAGTATCGTGCAGAGGAACTAGTTGAAGGGGGTTGCATGGTTCTAACAATGAGTGGAAGAAGAAATGAAGATCCATGTGACATAAAATATTGTTGCTACTATTGGGAGCTTTTAGCTGCTGTTCTTAATGGCATGGTCTTAGAGGGGATTATAAAGGAAGATCAAGTGAATACTTTTAATGTCCCTCAATATTATCCATCTCCATATGAAGTAGAGTTGGAAGTTCTCAATGAAGGATCATTTGCCATCAATCGTTTGGAGTTGTTTGAAGCGTATGTAGATGGTTCTAATCATCATGAATATGTATATAATGTTGCACGATTAATGAGAGCTATGGCTGAACCATTGGTAGTTAGCCACTTTGGTGAAGATATAATAGAAGAGATTTTTAGCCGTCACCAAAAAATCATAATTGATAAATTACCCAAGGAGAAACTGAAGGCCATTAATGTTATCATATCATTGACTAGAAAAGCATGA

Protein sequence

>Msa1319010

MDLGQVVHMNGGDGETSYAKNSFHQGNAVSWTKPIRDEAITSLYSNTLSRSLAIADLGCSSGPNTLFVVSDIIMVVENLCQQLNHSSPEYKIFFNDVSGNDFNNIFKSLDNFKEKLQNEIKTKMGPCYFFGVPGSFYNRVFPDQSLHFIHSSYSLHWLSKVPEGIENNKTNIYINYTSPSNVVKAYYDQFKRDFSVFLKYRAEELVEGGCMVLTMSGRRNEDPCDIKYCCYYWELLAAVLNGMVLEGIIKEDQVNTFNVPQYYPSPYEVELEVLNEGSFAINRLELFEAYVDGSNHHEYVYNVARLMRAMAEPLVVSHFGEDIIEEIFSRHQKIIIDKLPKEKLKAINVIISLTRKA*