AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0140500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0140500 MtrunA17_Chr3g0135651 99.524 210 1 0 1 210 1 210 3.86e-158 435
Msa0140500 MtrunA17_Chr7g0229341 46.753 154 80 2 50 201 7 160 1.69e-51 166
Msa0140500 MtrunA17_CPg0493361 46.753 154 80 2 50 201 7 160 5.34e-51 164
Msa0140500 MtrunA17_Chr4g0016411 46.753 154 80 2 50 201 7 160 5.34e-51 164
Msa0140500 MtrunA17_Chr7g0222091 38.562 153 72 2 50 201 7 138 3.21e-36 126
Msa0140500 MtrunA17_Chr4g0015251 51.948 77 36 1 126 201 2 78 8.04e-25 95.1
Msa0140500 MtrunA17_Chr7g0227431 42.708 96 53 2 50 144 7 101 4.20e-24 92.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0140500 AT5G11770.1 80.275 218 35 3 1 210 1 218 1.25e-122 346
Msa0140500 ATCG00430.1 46.104 154 81 2 50 201 7 160 4.03e-50 162

Find 100 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTTCTGTTTGTTGTTTA+TGG -0.031413 1_3:-74741994 None:intergenic
TAGTGTAACATTGATTATTT+TGG 0.150032 1_3:+74746840 Msa0140500:three_prime_UTR
CCTGTTGATATTTATGTTCC+CGG 0.283336 1_3:+74746431 Msa0140500:CDS
ACCAAATGCCCGAGCCTAGA+TGG 0.309620 1_3:+74746324 Msa0140500:CDS
CCCATCTAGGCTCGGGCATT+TGG 0.315314 1_3:-74746325 None:intergenic
ACTTTATAATAAGCAATTCA+TGG 0.367407 1_3:+74746583 Msa0140500:three_prime_UTR
AGGTTGATAATCTCATGAAT+TGG 0.373372 1_3:+74742260 Msa0140500:CDS
AGGCGGTGGAGCGTAAGGGG+TGG 0.374478 1_3:-74742179 None:intergenic
GCTATGAATCACCCTTTGTT+TGG 0.380093 1_3:+74746618 Msa0140500:three_prime_UTR
AAGAGCGGGAGCCATCTTAT+TGG 0.382683 1_3:-74742443 None:intergenic
AGAGAGATGGAAGGGTTGTA+TGG 0.387527 1_3:-74742144 None:intergenic
TTCTGTTTGTTGTTTATGGA+TGG 0.391969 1_3:-74741990 None:intergenic
GGAGGAGGCGGTGGAGCGTA+AGG 0.398546 1_3:-74742184 None:intergenic
CTCAGCAGTTGGAGGGCAGC+CGG 0.406470 1_3:-74746450 None:intergenic
GTGGTCGATGGAGGAGGCGG+TGG 0.407856 1_3:-74742193 None:intergenic
TCAATCTGGCCTATGACTTT+CGG 0.408619 1_3:+74742295 Msa0140500:CDS
TCTGATTGTATGATTGTTGC+TGG 0.414093 1_3:+74742412 Msa0140500:CDS
TCAATGTTACACTATTAATC+TGG 0.418095 1_3:-74746831 None:intergenic
GAGGTGGTCGATGGAGGAGG+CGG 0.422742 1_3:-74742196 None:intergenic
CATCATTTCAACAGCACAAC+AGG 0.430335 1_3:-74742323 None:intergenic
TGATCTTCTTCTGCAGTTGG+AGG 0.439435 1_3:-74746490 None:intergenic
CACATAAAACATACAGAGTA+AGG 0.442964 1_3:-74746663 None:intergenic
GGTTGATAATCTCATGAATT+GGG 0.445690 1_3:+74742261 Msa0140500:CDS
AGGAGGCGGTGGAGCGTAAG+GGG 0.451460 1_3:-74742182 None:intergenic
GCCTAGATGGGTTGTCTCCA+TGG 0.454702 1_3:+74746337 Msa0140500:CDS
CGTTACGATCTGGATCGATT+TGG 0.459982 1_3:+74742361 Msa0140500:CDS
CAGGCGAGTCCGAAAGTCAT+AGG 0.465570 1_3:-74742304 None:intergenic
ACTGCTGAGGCTTTACTGTA+TGG 0.466993 1_3:+74746464 Msa0140500:CDS
TATTGATCTTCTTCTGCAGT+TGG 0.469979 1_3:-74746493 None:intergenic
GGCGGTGGAGCGTAAGGGGT+GGG 0.470168 1_3:-74742178 None:intergenic
GTTAATGCTTCTTATGTACC+TGG 0.471184 1_3:+74746736 Msa0140500:three_prime_UTR
GGTCGATTAAGTTTATCTCT+TGG 0.471614 1_3:+74746551 Msa0140500:three_prime_UTR
TGGTGCTGCTCGTTACGATC+TGG 0.473692 1_3:+74742351 Msa0140500:CDS
AACTGCAGAAGAAGATCAAT+AGG 0.480409 1_3:+74746495 Msa0140500:CDS
CTCATGAATTGGGCTCGTAC+TGG 0.482560 1_3:+74742271 Msa0140500:CDS
TTGCTTATTATAAAGTAGCT+TGG 0.484390 1_3:-74746576 None:intergenic
CCGGGAACATAAATATCAAC+AGG 0.485170 1_3:-74746431 None:intergenic
GGAGAGGTGGTCGATGGAGG+AGG 0.486052 1_3:-74742199 None:intergenic
TCCATGGGAAGTTGTGCTAA+TGG 0.486720 1_3:+74746353 Msa0140500:CDS
ATGAATCACCCTTTGTTTGG+TGG 0.496345 1_3:+74746621 Msa0140500:three_prime_UTR
CAATCAGATTGACGAGGACT+AGG 0.496509 1_3:-74742397 None:intergenic
GCCGTCTTCGATATTCCAAC+GGG 0.500071 1_3:-74742220 None:intergenic
TGGAGCGTAAGGGGTGGGTG+TGG 0.502797 1_3:-74742173 None:intergenic
GGGCTCGTACTGGCTCAATC+TGG 0.503571 1_3:+74742281 Msa0140500:CDS
CCCATGGAGACAACCCATCT+AGG 0.504105 1_3:-74746338 None:intergenic
GAAACATACTTGCGAAGAGC+GGG 0.507595 1_3:-74742457 None:intergenic
TCAGCAGTTGGAGGGCAGCC+GGG 0.508884 1_3:-74746449 None:intergenic
CAGAATATCCACCAAACAAA+GGG 0.511142 1_3:-74746629 None:intergenic
CTTCGATATTCCAACGGGAG+AGG 0.515451 1_3:-74742215 None:intergenic
TACAGTAAAGCCTCAGCAGT+TGG 0.522747 1_3:-74746461 None:intergenic
CCATCGACCACCTCTCCCGT+TGG 0.528192 1_3:+74742205 Msa0140500:CDS
GAGGAGGCGGTGGAGCGTAA+GGG 0.528912 1_3:-74742183 None:intergenic
TGAGTGGTTTGTTTAATCCC+AGG 0.531284 1_3:-74746754 None:intergenic
CCAAATGCCCGAGCCTAGAT+GGG 0.537493 1_3:+74746325 Msa0140500:CDS
GAGACAACCCATCTAGGCTC+GGG 0.544154 1_3:-74746332 None:intergenic
CCTAGATGGGTTGTCTCCAT+GGG 0.544839 1_3:+74746338 Msa0140500:CDS
CGGCTGCCCTCCAACTGCTG+AGG 0.547600 1_3:+74746451 Msa0140500:CDS
ACGGGAGAGGTGGTCGATGG+AGG 0.553280 1_3:-74742202 None:intergenic
TCCATTAGCACAACTTCCCA+TGG 0.554029 1_3:-74746354 None:intergenic
TTAATGCTTCTTATGTACCT+GGG 0.557163 1_3:+74746737 Msa0140500:three_prime_UTR
AAGAAGAACGAGGGGAAGAA+CGG 0.557431 1_3:+74742027 Msa0140500:five_prime_UTR
ACAAAGGGTGATTCATAGCA+AGG 0.558007 1_3:-74746614 None:intergenic
GGAAGTTGTGCTAATGGAGG+AGG 0.559773 1_3:+74746359 Msa0140500:CDS
CGATATTCCAACGGGAGAGG+TGG 0.560126 1_3:-74742212 None:intergenic
GGAGACAACCCATCTAGGCT+CGG 0.561380 1_3:-74746333 None:intergenic
TGGTACTCTTACCAATAAGA+TGG 0.563740 1_3:+74742432 Msa0140500:CDS
TTAATCTGGAGTAAGAGAGA+TGG 0.563947 1_3:-74746817 None:intergenic
CGCCGTCTTCGATATTCCAA+CGG 0.565051 1_3:-74742221 None:intergenic
CTGTTGTCCGAGGATGTGAC+AGG 0.567271 1_3:+74746402 Msa0140500:CDS
GGCGCAAGGACTTCCTCCAT+TGG 0.568783 1_3:+74746516 Msa0140500:CDS
AGAAACATACTTGCGAAGAG+CGG 0.569989 1_3:-74742458 None:intergenic
GAACGATCCTGTCACATCCT+CGG 0.578017 1_3:-74746409 None:intergenic
ATCCATAAACAACAAACAGA+AGG 0.587191 1_3:+74741992 Msa0140500:five_prime_UTR
GCAAGGACTTCCTCCATTGG+TGG 0.590384 1_3:+74746519 Msa0140500:CDS
CTCACTGAGTCCACCAATGG+AGG 0.591840 1_3:-74746529 None:intergenic
GTAAAGCCTCAGCAGTTGGA+GGG 0.606304 1_3:-74746457 None:intergenic
ACAGAATATCCACCAAACAA+AGG 0.607833 1_3:-74746630 None:intergenic
GCTGTTGAAATGATGCATAC+TGG 0.608176 1_3:+74742331 Msa0140500:CDS
AGTAAAGCCTCAGCAGTTGG+AGG 0.610038 1_3:-74746458 None:intergenic
CATAAACAACAAACAGAAGG+AGG 0.610565 1_3:+74741995 Msa0140500:five_prime_UTR
GACCTCACTGAGTCCACCAA+TGG 0.613212 1_3:-74746532 None:intergenic
TACTCTTACTCTGTTGTCCG+AGG 0.620931 1_3:+74746392 Msa0140500:CDS
CCAACGGGAGAGGTGGTCGA+TGG 0.621156 1_3:-74742205 None:intergenic
GGTGTGGTTGATGAGAGAGA+TGG 0.624092 1_3:-74742157 None:intergenic
TCGAGTTAGAAATGCCGCCA+TGG 0.627508 1_3:-74742071 None:intergenic
GAAGAAGATCAATAGGCGCA+AGG 0.632047 1_3:+74746502 Msa0140500:CDS
TCCCGTTGGAATATCGAAGA+CGG 0.641180 1_3:+74742219 Msa0140500:CDS
CTCCATTGGTGGACTCAGTG+AGG 0.646971 1_3:+74746530 Msa0140500:CDS
TGGTTGATGAGAGAGATGGA+AGG 0.649649 1_3:-74742153 None:intergenic
ATGGGAAGTTGTGCTAATGG+AGG 0.660590 1_3:+74746356 Msa0140500:CDS
GGTTGATGAGAGAGATGGAA+GGG 0.665700 1_3:-74742152 None:intergenic
ACGTATGAGTCAAACATGAG+TGG 0.672071 1_3:-74746770 None:intergenic
AGTTAGAAATGCCGCCATGG+TGG 0.674876 1_3:-74742068 None:intergenic
GGACAACAGAGTAAGAGTAG+TGG 0.675431 1_3:-74746388 None:intergenic
TGGAGAGACGCTAAGCGTTG+TGG 0.684822 1_3:-74742124 None:intergenic
ATCAACGCAACGAACCACCA+TGG 0.685246 1_3:+74742054 Msa0140500:exon
GGCGGAGTACGTGATCTCGA+AGG 0.687555 1_3:+74742240 Msa0140500:CDS
CGTTGGAATATCGAAGACGG+CGG 0.718228 1_3:+74742222 Msa0140500:CDS
AACGCAACGAACCACCATGG+CGG 0.727863 1_3:+74742057 Msa0140500:exon
ATCATACAATCAGATTGACG+AGG 0.742801 1_3:-74742403 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAATAAATGGATTTTTA+TGG - chr1_3:74745091-74745110 None:intergenic 10.0%
!!! AACTCATTTTTTAAAATAAA+TGG - chr1_3:74745101-74745120 None:intergenic 10.0%
!! GAAAGAATAATTTATAAATT+TGG + chr1_3:74746077-74746096 Msa0140500:intron 10.0%
!! AAAATGACATAAAAGTTATA+TGG + chr1_3:74743991-74744010 Msa0140500:intron 15.0%
!! TTTATGCTATTAATTACTAT+AGG + chr1_3:74744284-74744303 Msa0140500:intron 15.0%
!! ACTATCAATATATTATTACT+TGG + chr1_3:74744327-74744346 Msa0140500:intron 15.0%
!!! TGAAAAAAGTGATTTTTTTA+AGG + chr1_3:74745265-74745284 Msa0140500:intron 15.0%
!!! GGAAAAAAATAGATTTTTTT+TGG + chr1_3:74745286-74745305 Msa0140500:intron 15.0%
!! ATATATTGATAGATAAAGAT+GGG - chr1_3:74745830-74745849 None:intergenic 15.0%
!! TCATAAAAACTTACTATTAA+AGG - chr1_3:74746011-74746030 None:intergenic 15.0%
!!! TAAGTTTTTATGAAAATTTG+TGG + chr1_3:74746018-74746037 Msa0140500:intron 15.0%
!! AAGCAAATTAAAATTAAAGA+CGG - chr1_3:74746229-74746248 None:intergenic 15.0%
!! AGAATGTGAAAATTTAACAA+AGG + chr1_3:74742603-74742622 Msa0140500:intron 20.0%
!! GAATGTGAAAATTTAACAAA+GGG + chr1_3:74742604-74742623 Msa0140500:intron 20.0%
!! AATGTGAAAATTTAACAAAG+GGG + chr1_3:74742605-74742624 Msa0140500:intron 20.0%
!!! AAGTTAAATTGTTTTTGTAC+AGG - chr1_3:74742880-74742899 None:intergenic 20.0%
!!! TATCTTTAAGTTTTTCTGTT+TGG - chr1_3:74743628-74743647 None:intergenic 20.0%
!!! TTTTTTTTTTCTGTAACAAC+TGG - chr1_3:74743879-74743898 None:intergenic 20.0%
!! TCTAACAATATATCATTACT+TGG + chr1_3:74744036-74744055 Msa0140500:intron 20.0%
!! TTTAGTCTCATAAATAAAGA+GGG - chr1_3:74744209-74744228 None:intergenic 20.0%
!!! TTTTAGTCTCATAAATAAAG+AGG - chr1_3:74744210-74744229 None:intergenic 20.0%
!! ATTGACTATTATCTTATCAT+AGG + chr1_3:74744819-74744838 Msa0140500:intron 20.0%
!! GGAAGATTTCATTAATAAAA+TGG - chr1_3:74744907-74744926 None:intergenic 20.0%
!!! ATCTATTTTTTTCAACAACA+AGG - chr1_3:74745146-74745165 None:intergenic 20.0%
!!! ATCTAAAATGAAAAGCTATT+AGG - chr1_3:74745185-74745204 None:intergenic 20.0%
!!! CAATTTGGTATTTTGATAAT+GGG - chr1_3:74745333-74745352 None:intergenic 20.0%
!!! TCAATTTGGTATTTTGATAA+TGG - chr1_3:74745334-74745353 None:intergenic 20.0%
!! AATGTGAAACAATATAAATG+GGG - chr1_3:74745441-74745460 None:intergenic 20.0%
!! CAATGTGAAACAATATAAAT+GGG - chr1_3:74745442-74745461 None:intergenic 20.0%
!! AAAAAGGAAAATTAGTATCA+TGG - chr1_3:74745765-74745784 None:intergenic 20.0%
!!! TGATACTAATTTTCCTTTTT+TGG + chr1_3:74745765-74745784 Msa0140500:intron 20.0%
!! GATATATTGATAGATAAAGA+TGG - chr1_3:74745831-74745850 None:intergenic 20.0%
!!! TGAATTTGTTTTTAATCACT+TGG + chr1_3:74745911-74745930 Msa0140500:intron 20.0%
!!! GAATTTGTTTTTAATCACTT+GGG + chr1_3:74745912-74745931 Msa0140500:intron 20.0%
!! ATCCCTCTTATATTAAAATT+TGG + chr1_3:74745947-74745966 Msa0140500:intron 20.0%
!! TCCCTCTTATATTAAAATTT+GGG + chr1_3:74745948-74745967 Msa0140500:intron 20.0%
!!! TCCCAAATTTTAATATAAGA+GGG - chr1_3:74745952-74745971 None:intergenic 20.0%
!!! TTCCCAAATTTTAATATAAG+AGG - chr1_3:74745953-74745972 None:intergenic 20.0%
!! AAATTGTATAGACAGAATAA+TGG - chr1_3:74746167-74746186 None:intergenic 20.0%
!! ACTTTATAATAAGCAATTCA+TGG + chr1_3:74746583-74746602 Msa0140500:three_prime_UTR 20.0%
!!! TAGTGTAACATTGATTATTT+TGG + chr1_3:74746840-74746859 Msa0140500:three_prime_UTR 20.0%
!!! TAACATTGATTATTTTGGAA+TGG + chr1_3:74746845-74746864 Msa0140500:three_prime_UTR 20.0%
!!! AACATTGATTATTTTGGAAT+GGG + chr1_3:74746846-74746865 Msa0140500:three_prime_UTR 20.0%
! ACAAATCAATGCTTCTATAA+GGG - chr1_3:74742547-74742566 None:intergenic 25.0%
! AACAAATCAATGCTTCTATA+AGG - chr1_3:74742548-74742567 None:intergenic 25.0%
! ATGTGAAAATTTAACAAAGG+GGG + chr1_3:74742606-74742625 Msa0140500:intron 25.0%
! TTAAATTGCTCTCTTGATTT+AGG + chr1_3:74742669-74742688 Msa0140500:intron 25.0%
! AATTTAGCGCTTATTGTATA+AGG + chr1_3:74742713-74742732 Msa0140500:intron 25.0%
! ATTTAGCGCTTATTGTATAA+GGG + chr1_3:74742714-74742733 Msa0140500:intron 25.0%
!!! ACAACTTTCATTTTAGTTGT+TGG - chr1_3:74742991-74743010 None:intergenic 25.0%
! AAACACTCGTAAAACTAATT+GGG - chr1_3:74743099-74743118 None:intergenic 25.0%
! ACGTTCAAATTCAATTGAAA+TGG - chr1_3:74743747-74743766 None:intergenic 25.0%
! TGTCTACAAAAATGTTCAAT+TGG + chr1_3:74743851-74743870 Msa0140500:intron 25.0%
! GTCTACAAAAATGTTCAATT+GGG + chr1_3:74743852-74743871 Msa0140500:intron 25.0%
! ATTCTGCTAGTAATTACTAT+AGG + chr1_3:74743929-74743948 Msa0140500:intron 25.0%
! AGATAGTTCAAATTCAACAA+AGG + chr1_3:74744124-74744143 Msa0140500:intron 25.0%
!! AGGGTTTTCAAATTCAAAAA+AGG + chr1_3:74744419-74744438 Msa0140500:intron 25.0%
!! GTTTTCAAATTCAAAAAAGG+TGG + chr1_3:74744422-74744441 Msa0140500:intron 25.0%
! AAGACCTAACTAAATTAAGA+GGG - chr1_3:74744505-74744524 None:intergenic 25.0%
! TAACTTATGAAAACAACTTG+TGG - chr1_3:74744655-74744674 None:intergenic 25.0%
!!! GTTGTTTTCATAAGTTATCA+TGG + chr1_3:74744658-74744677 Msa0140500:intron 25.0%
! GCTTAGTATCAAACAATATT+GGG + chr1_3:74744957-74744976 Msa0140500:intron 25.0%
!!! TCATTTTTGAGTGTTTGTTT+AGG - chr1_3:74745248-74745267 None:intergenic 25.0%
! GCAATGTGAAACAATATAAA+TGG - chr1_3:74745443-74745462 None:intergenic 25.0%
! TGACTTAAGTGTGTATTATT+GGG - chr1_3:74745507-74745526 None:intergenic 25.0%
! ATGACTTAAGTGTGTATTAT+TGG - chr1_3:74745508-74745527 None:intergenic 25.0%
! ATAATACACACTTAAGTCAT+TGG + chr1_3:74745508-74745527 Msa0140500:intron 25.0%
! TAATACACACTTAAGTCATT+GGG + chr1_3:74745509-74745528 Msa0140500:intron 25.0%
!!! ACTAATTTTCCTTTTTTGGA+AGG + chr1_3:74745769-74745788 Msa0140500:intron 25.0%
!!! CATTTTTTTCCTTCCAAAAA+AGG - chr1_3:74745781-74745800 None:intergenic 25.0%
!! TTTTTAATCACTTGGGATTT+GGG + chr1_3:74745919-74745938 Msa0140500:intron 25.0%
! AATTTGTGGATTTAATGCAT+TGG + chr1_3:74746032-74746051 Msa0140500:intron 25.0%
! TAAAATTAAAGACGGAATGA+TGG - chr1_3:74746221-74746240 None:intergenic 25.0%
!!! TTTAATTTGCTTCTTAGACT+TGG + chr1_3:74746237-74746256 Msa0140500:intron 25.0%
! TTGCTTATTATAAAGTAGCT+TGG - chr1_3:74746579-74746598 None:intergenic 25.0%
! TCAATGTTACACTATTAATC+TGG - chr1_3:74746834-74746853 None:intergenic 25.0%
!! TTCTGTTTGTTGTTTATGGA+TGG - chr1_3:74741993-74742012 None:intergenic 30.0%
ATCCATAAACAACAAACAGA+AGG + chr1_3:74741992-74742011 Msa0140500:five_prime_UTR 30.0%
!! AGGTTGATAATCTCATGAAT+TGG + chr1_3:74742260-74742279 Msa0140500:CDS 30.0%
!! GGTTGATAATCTCATGAATT+GGG + chr1_3:74742261-74742280 Msa0140500:CDS 30.0%
! TTTCTTTTCCCTCTTTTCTA+GGG + chr1_3:74742476-74742495 Msa0140500:intron 30.0%
TGTAAAAACCCTAGAAAAGA+GGG - chr1_3:74742487-74742506 None:intergenic 30.0%
ATGTAAAAACCCTAGAAAAG+AGG - chr1_3:74742488-74742507 None:intergenic 30.0%
TGGATAAACAGTTTATTTGC+AGG - chr1_3:74742971-74742990 None:intergenic 30.0%
AATAAGCTGAAAACAGCTTA+TGG + chr1_3:74743041-74743060 Msa0140500:intron 30.0%
CAAACACTCGTAAAACTAAT+TGG - chr1_3:74743100-74743119 None:intergenic 30.0%
GAGAATTGAGCTTATCTATT+GGG - chr1_3:74743129-74743148 None:intergenic 30.0%
TGAGAATTGAGCTTATCTAT+TGG - chr1_3:74743130-74743149 None:intergenic 30.0%
!! CGCTTTTAGGAATATTATGA+CGG - chr1_3:74743222-74743241 None:intergenic 30.0%
!! TAAAGGATTCTAGGATTCTA+TGG - chr1_3:74743502-74743521 None:intergenic 30.0%
TGTGTACTTGCAAAAAAGTA+CGG - chr1_3:74743525-74743544 None:intergenic 30.0%
!! GCTTATCTTTGGTATTTTGA+AGG - chr1_3:74743604-74743623 None:intergenic 30.0%
TATGACTTAAACTAGGAAGA+AGG - chr1_3:74743672-74743691 None:intergenic 30.0%
TTCTTCCTAGTTTAAGTCAT+AGG + chr1_3:74743671-74743690 Msa0140500:intron 30.0%
TCTTCCTAGTTTAAGTCATA+GGG + chr1_3:74743672-74743691 Msa0140500:intron 30.0%
! AAGTTACAGAGTCTTATATG+TGG - chr1_3:74744362-74744381 None:intergenic 30.0%
TTCTTTATCTGCAATCATGA+AGG + chr1_3:74744399-74744418 Msa0140500:intron 30.0%
TCTTTATCTGCAATCATGAA+GGG + chr1_3:74744400-74744419 Msa0140500:intron 30.0%
AATGCCCTCTTAATTTAGTT+AGG + chr1_3:74744498-74744517 Msa0140500:intron 30.0%
CAAGACCTAACTAAATTAAG+AGG - chr1_3:74744506-74744525 None:intergenic 30.0%
AAGTTATCATGGAGAAGTTA+TGG + chr1_3:74744669-74744688 Msa0140500:intron 30.0%
ATTGCACGATAAAATCAAGT+GGG - chr1_3:74744777-74744796 None:intergenic 30.0%
AATTGCACGATAAAATCAAG+TGG - chr1_3:74744778-74744797 None:intergenic 30.0%
CTTCAATATATTATGCCTGT+AGG + chr1_3:74744845-74744864 Msa0140500:intron 30.0%
GGCTTAGTATCAAACAATAT+TGG + chr1_3:74744956-74744975 Msa0140500:intron 30.0%
! GGAAAAAATCTGAAACAAAC+AGG + chr1_3:74745307-74745326 Msa0140500:intron 30.0%
AATACACACTTAAGTCATTG+GGG + chr1_3:74745510-74745529 Msa0140500:intron 30.0%
AACATTAAGAGTCCTATAAG+TGG - chr1_3:74745872-74745891 None:intergenic 30.0%
! GTTTTTAATCACTTGGGATT+TGG + chr1_3:74745918-74745937 Msa0140500:intron 30.0%
CACATAAAACATACAGAGTA+AGG - chr1_3:74746666-74746685 None:intergenic 30.0%
! CTTACTCTGTATGTTTTATG+TGG + chr1_3:74746664-74746683 Msa0140500:three_prime_UTR 30.0%
! ATGTTTTATGTGGAGCTTTT+TGG + chr1_3:74746674-74746693 Msa0140500:three_prime_UTR 30.0%
! TGTTTTATGTGGAGCTTTTT+GGG + chr1_3:74746675-74746694 Msa0140500:three_prime_UTR 30.0%
TTAATGCTTCTTATGTACCT+GGG + chr1_3:74746737-74746756 Msa0140500:three_prime_UTR 30.0%
!!! ACAGCGAAACTGTTTTTGTT+AGG - chr1_3:74741962-74741981 None:intergenic 35.0%
!! CTCCTTCTGTTTGTTGTTTA+TGG - chr1_3:74741997-74742016 None:intergenic 35.0%
CATAAACAACAAACAGAAGG+AGG + chr1_3:74741995-74742014 Msa0140500:five_prime_UTR 35.0%
AAGAAGAAGAAGAAGAACGA+GGG + chr1_3:74742018-74742037 Msa0140500:five_prime_UTR 35.0%
ATCATACAATCAGATTGACG+AGG - chr1_3:74742406-74742425 None:intergenic 35.0%
TCTGATTGTATGATTGTTGC+TGG + chr1_3:74742412-74742431 Msa0140500:CDS 35.0%
TGGTACTCTTACCAATAAGA+TGG + chr1_3:74742432-74742451 Msa0140500:CDS 35.0%
! GTTTCTTTTCCCTCTTTTCT+AGG + chr1_3:74742475-74742494 Msa0140500:intron 35.0%
!! TAAGTTTTGTGCGACTGTTT+AGG + chr1_3:74742760-74742779 Msa0140500:intron 35.0%
GTAAAACTAATTGGGATACG+AGG - chr1_3:74743091-74743110 None:intergenic 35.0%
! CTTCTAGAAGTTTAGTAAGG+CGG - chr1_3:74743338-74743357 None:intergenic 35.0%
! AGGCTTCTAGAAGTTTAGTA+AGG - chr1_3:74743341-74743360 None:intergenic 35.0%
!!! TGTGTATTTTGGGGCTTTTT+GGG - chr1_3:74743374-74743393 None:intergenic 35.0%
!!! TTGTGTATTTTGGGGCTTTT+TGG - chr1_3:74743375-74743394 None:intergenic 35.0%
!!! AGGGGTATTTGTGTATTTTG+GGG - chr1_3:74743383-74743402 None:intergenic 35.0%
!!! CAGGGGTATTTGTGTATTTT+GGG - chr1_3:74743384-74743403 None:intergenic 35.0%
!!! ACAGGGGTATTTGTGTATTT+TGG - chr1_3:74743385-74743404 None:intergenic 35.0%
!! GATTCTAGGATTCTATGGTT+TGG - chr1_3:74743497-74743516 None:intergenic 35.0%
AAAGTACGGTAAAGGATTCT+AGG - chr1_3:74743511-74743530 None:intergenic 35.0%
! CTTGCAAAAAAGTACGGTAA+AGG - chr1_3:74743519-74743538 None:intergenic 35.0%
!! TTCTGTTTGGTGCTTATCTT+TGG - chr1_3:74743615-74743634 None:intergenic 35.0%
CTTCCTAGTTTAAGTCATAG+GGG + chr1_3:74743673-74743692 Msa0140500:intron 35.0%
ATCATCTCACGTTTAATGTG+AGG + chr1_3:74743806-74743825 Msa0140500:intron 35.0%
TCATCTCACGTTTAATGTGA+GGG + chr1_3:74743807-74743826 Msa0140500:intron 35.0%
! AAGTTACAGAGCCTTATATG+TGG - chr1_3:74744071-74744090 None:intergenic 35.0%
TAAAATCAAGTGGGCAATCA+AGG - chr1_3:74744768-74744787 None:intergenic 35.0%
! TGCTTCTGGAAGAATCAATT+TGG - chr1_3:74745348-74745367 None:intergenic 35.0%
! AAATTGATTCTTCCAGAAGC+AGG + chr1_3:74745347-74745366 Msa0140500:intron 35.0%
! GGAAAAGAGAATGAGTTTTG+GGG - chr1_3:74745420-74745439 None:intergenic 35.0%
! GGGAAAAGAGAATGAGTTTT+GGG - chr1_3:74745421-74745440 None:intergenic 35.0%
AAGGGAATTAGAAGCTCATA+CGG - chr1_3:74745469-74745488 None:intergenic 35.0%
ATTTGAATGTCACTGCATGT+CGG + chr1_3:74745591-74745610 Msa0140500:intron 35.0%
!! TCTCTACGAAAGTGTTCAAT+TGG + chr1_3:74745683-74745702 Msa0140500:intron 35.0%
!! CTCTACGAAAGTGTTCAATT+GGG + chr1_3:74745684-74745703 Msa0140500:intron 35.0%
ATTGATAGATAAAGATGGGC+AGG - chr1_3:74745826-74745845 None:intergenic 35.0%
CAGATTACTGTTCCACTTAT+AGG + chr1_3:74745857-74745876 Msa0140500:intron 35.0%
! TGTATGTTTAGCTGGCTTAA+TGG - chr1_3:74746264-74746283 None:intergenic 35.0%
TTGAGAACTGTATGTTTAGC+TGG - chr1_3:74746272-74746291 None:intergenic 35.0%
AATGCTGACAAATCATTGCA+GGG + chr1_3:74746295-74746314 Msa0140500:intron 35.0%
CCTGTTGATATTTATGTTCC+CGG + chr1_3:74746431-74746450 Msa0140500:CDS 35.0%
TATTGATCTTCTTCTGCAGT+TGG - chr1_3:74746496-74746515 None:intergenic 35.0%
AACTGCAGAAGAAGATCAAT+AGG + chr1_3:74746495-74746514 Msa0140500:CDS 35.0%
GGTCGATTAAGTTTATCTCT+TGG + chr1_3:74746551-74746570 Msa0140500:three_prime_UTR 35.0%
CAGAATATCCACCAAACAAA+GGG - chr1_3:74746632-74746651 None:intergenic 35.0%
ACAGAATATCCACCAAACAA+AGG - chr1_3:74746633-74746652 None:intergenic 35.0%
! GTTTTATGTGGAGCTTTTTG+GGG + chr1_3:74746676-74746695 Msa0140500:three_prime_UTR 35.0%
! TTTTATGTGGAGCTTTTTGG+GGG + chr1_3:74746677-74746696 Msa0140500:three_prime_UTR 35.0%
!! TTTTGGGGGCTTAAAATCTT+TGG + chr1_3:74746691-74746710 Msa0140500:three_prime_UTR 35.0%
GTTAATGCTTCTTATGTACC+TGG + chr1_3:74746736-74746755 Msa0140500:three_prime_UTR 35.0%
! TTAATCTGGAGTAAGAGAGA+TGG - chr1_3:74746820-74746839 None:intergenic 35.0%
GAAGAAGAAGAAGAAGAACG+AGG + chr1_3:74742017-74742036 Msa0140500:five_prime_UTR 40.0%
AGAAGAAGAAGAAGAACGAG+GGG + chr1_3:74742019-74742038 Msa0140500:five_prime_UTR 40.0%
TCAATCTGGCCTATGACTTT+CGG + chr1_3:74742295-74742314 Msa0140500:CDS 40.0%
CATCATTTCAACAGCACAAC+AGG - chr1_3:74742326-74742345 None:intergenic 40.0%
GCTGTTGAAATGATGCATAC+TGG + chr1_3:74742331-74742350 Msa0140500:CDS 40.0%
AGAAACATACTTGCGAAGAG+CGG - chr1_3:74742461-74742480 None:intergenic 40.0%
CTCTTGATTTAGGCTCTGTT+TGG + chr1_3:74742679-74742698 Msa0140500:intron 40.0%
AGTCGCACAAAACTTATGAC+AGG - chr1_3:74742756-74742775 None:intergenic 40.0%
TTGCATAAGCTATCCTGAAG+AGG + chr1_3:74743011-74743030 Msa0140500:intron 40.0%
CTTATTTCCACAACCTCTTC+AGG - chr1_3:74743027-74743046 None:intergenic 40.0%
CTTATGGACATGTCATGAGT+TGG + chr1_3:74743057-74743076 Msa0140500:intron 40.0%
!! TAGAAACCTTTTGGAGGTCT+TGG - chr1_3:74743266-74743285 None:intergenic 40.0%
! GTGTACTAGAAACCTTTTGG+AGG - chr1_3:74743272-74743291 None:intergenic 40.0%
! GAGGTGTACTAGAAACCTTT+TGG - chr1_3:74743275-74743294 None:intergenic 40.0%
TGGTATTTATAGCCCGCTAT+GGG - chr1_3:74743438-74743457 None:intergenic 40.0%
! CTATGGTTTGGACTGATGAT+TGG - chr1_3:74743485-74743504 None:intergenic 40.0%
ACAGTATATTCTGCGACACT+AGG + chr1_3:74743554-74743573 Msa0140500:intron 40.0%
ATTCTGCGACACTAGGAAAA+AGG + chr1_3:74743561-74743580 Msa0140500:intron 40.0%
CAACCCCTATGACTTAAACT+AGG - chr1_3:74743679-74743698 None:intergenic 40.0%
CTAGTTTAAGTCATAGGGGT+TGG + chr1_3:74743677-74743696 Msa0140500:intron 40.0%
TTGTCACTGCATGTTAGAAG+AGG + chr1_3:74743766-74743785 Msa0140500:intron 40.0%
CATCTCACGTTTAATGTGAG+GGG + chr1_3:74743808-74743827 Msa0140500:intron 40.0%
! TCGGGTTATTTGAGTTTAGC+TGG - chr1_3:74744734-74744753 None:intergenic 40.0%
TCAAATAACCCGATCCAAAC+AGG + chr1_3:74744741-74744760 Msa0140500:intron 40.0%
AATCAAGGACCTGTTTGGAT+CGG - chr1_3:74744753-74744772 None:intergenic 40.0%
CTGTAGGAGACTAATAGCTA+GGG + chr1_3:74744861-74744880 Msa0140500:intron 40.0%
CAGCTGCAGAAGAATCAATT+TGG - chr1_3:74744928-74744947 None:intergenic 40.0%
!!! TCTTCTGCAGCTGTTGATTT+TGG + chr1_3:74744935-74744954 Msa0140500:intron 40.0%
ATTGCAATAACCTGCACACT+TGG - chr1_3:74745386-74745405 None:intergenic 40.0%
! GGGGAAAAGAGAATGAGTTT+TGG - chr1_3:74745422-74745441 None:intergenic 40.0%
AGGGAATTAGAAGCTCATAC+GGG - chr1_3:74745468-74745487 None:intergenic 40.0%
AGCTTCTAATTCCCTTCTAC+AGG + chr1_3:74745473-74745492 Msa0140500:intron 40.0%
AAGATGGGCAGGATAAAGTT+TGG - chr1_3:74745815-74745834 None:intergenic 40.0%
!! GACGGAATGATGGATAAACA+AGG - chr1_3:74746211-74746230 None:intergenic 40.0%
GAATGCTGACAAATCATTGC+AGG + chr1_3:74746294-74746313 Msa0140500:intron 40.0%
CCGGGAACATAAATATCAAC+AGG - chr1_3:74746434-74746453 None:intergenic 40.0%
ACAAAGGGTGATTCATAGCA+AGG - chr1_3:74746617-74746636 None:intergenic 40.0%
GCTATGAATCACCCTTTGTT+TGG + chr1_3:74746618-74746637 Msa0140500:three_prime_UTR 40.0%
! ATGAATCACCCTTTGTTTGG+TGG + chr1_3:74746621-74746640 Msa0140500:three_prime_UTR 40.0%
!! TGAGTGGTTTGTTTAATCCC+AGG - chr1_3:74746757-74746776 None:intergenic 40.0%
ACGTATGAGTCAAACATGAG+TGG - chr1_3:74746773-74746792 None:intergenic 40.0%
!!! ACTGTTTTTGTTAGGCGACG+TGG - chr1_3:74741954-74741973 None:intergenic 45.0%
AAGAAGAACGAGGGGAAGAA+CGG + chr1_3:74742027-74742046 Msa0140500:five_prime_UTR 45.0%
AGAGAGATGGAAGGGTTGTA+TGG - chr1_3:74742147-74742166 None:intergenic 45.0%
!! GGTTGATGAGAGAGATGGAA+GGG - chr1_3:74742155-74742174 None:intergenic 45.0%
!! TGGTTGATGAGAGAGATGGA+AGG - chr1_3:74742156-74742175 None:intergenic 45.0%
TCCCGTTGGAATATCGAAGA+CGG + chr1_3:74742219-74742238 Msa0140500:CDS 45.0%
CGTTACGATCTGGATCGATT+TGG + chr1_3:74742361-74742380 Msa0140500:CDS 45.0%
CAATCAGATTGACGAGGACT+AGG - chr1_3:74742400-74742419 None:intergenic 45.0%
GAAACATACTTGCGAAGAGC+GGG - chr1_3:74742460-74742479 None:intergenic 45.0%
! GTTTTGTGCGACTGTTTAGG+AGG + chr1_3:74742763-74742782 Msa0140500:intron 45.0%
AAGCTATCCTGAAGAGGTTG+TGG + chr1_3:74743017-74743036 Msa0140500:intron 45.0%
! TGGAGGGCTTATACGCTTTT+AGG - chr1_3:74743235-74743254 None:intergenic 45.0%
!! GTTTCTAGTACACCTCCAGA+GGG + chr1_3:74743279-74743298 Msa0140500:intron 45.0%
!!! GTATTTTGGGGCTTTTTGGG+CGG - chr1_3:74743371-74743390 None:intergenic 45.0%
ACACAAATACCCCTGTTGCT+TGG + chr1_3:74743389-74743408 Msa0140500:intron 45.0%
TGCTTGGTTTCCAAGCAACA+GGG - chr1_3:74743402-74743421 None:intergenic 45.0%
TTGCTTGGTTTCCAAGCAAC+AGG - chr1_3:74743403-74743422 None:intergenic 45.0%
GTGGTATTTATAGCCCGCTA+TGG - chr1_3:74743439-74743458 None:intergenic 45.0%
AGCACGTAGAGAAGACTATC+TGG - chr1_3:74743706-74743725 None:intergenic 45.0%
GATAGTCTTCTCTACGTGCT+CGG + chr1_3:74743706-74743725 Msa0140500:intron 45.0%
TGTTAGAAGAGGTTCGTACG+TGG + chr1_3:74743777-74743796 Msa0140500:intron 45.0%
GGATTGCTGCTCCACATATA+AGG + chr1_3:74744057-74744076 Msa0140500:intron 45.0%
ATCAAGGACCTGTTTGGATC+GGG - chr1_3:74744752-74744771 None:intergenic 45.0%
! CCTAGCTATTAGTCTCCTAC+AGG - chr1_3:74744863-74744882 None:intergenic 45.0%
CCTGTAGGAGACTAATAGCT+AGG + chr1_3:74744860-74744879 Msa0140500:intron 45.0%
AGGTAAATGGAACCTGCTTC+TGG - chr1_3:74745362-74745381 None:intergenic 45.0%
GAATTAGAAGCTCATACGGG+CGG - chr1_3:74745465-74745484 None:intergenic 45.0%
GGGAAGAAAGACCTGTAGAA+GGG - chr1_3:74745487-74745506 None:intergenic 45.0%
TGGGAAGAAAGACCTGTAGA+AGG - chr1_3:74745488-74745507 None:intergenic 45.0%
CACACTTAAGTCATTGGGGT+TGG + chr1_3:74745514-74745533 Msa0140500:intron 45.0%
TGTCTCACACCTGAATGTGA+AGG + chr1_3:74745639-74745658 Msa0140500:intron 45.0%
GTCTCACACCTGAATGTGAA+GGG + chr1_3:74745640-74745659 Msa0140500:intron 45.0%
ACTTCACACCCTTCACATTC+AGG - chr1_3:74745651-74745670 None:intergenic 45.0%
!! AAGGCCCTTAAAGAGTGTTC+CGG - chr1_3:74745992-74746011 None:intergenic 45.0%
TCCATGGGAAGTTGTGCTAA+TGG + chr1_3:74746353-74746372 Msa0140500:CDS 45.0%
TCCATTAGCACAACTTCCCA+TGG - chr1_3:74746357-74746376 None:intergenic 45.0%
ATGGGAAGTTGTGCTAATGG+AGG + chr1_3:74746356-74746375 Msa0140500:CDS 45.0%
GGACAACAGAGTAAGAGTAG+TGG - chr1_3:74746391-74746410 None:intergenic 45.0%
TACTCTTACTCTGTTGTCCG+AGG + chr1_3:74746392-74746411 Msa0140500:CDS 45.0%
TACAGTAAAGCCTCAGCAGT+TGG - chr1_3:74746464-74746483 None:intergenic 45.0%
ACTGCTGAGGCTTTACTGTA+TGG + chr1_3:74746464-74746483 Msa0140500:CDS 45.0%
TGATCTTCTTCTGCAGTTGG+AGG - chr1_3:74746493-74746512 None:intergenic 45.0%
GAAGAAGATCAATAGGCGCA+AGG + chr1_3:74746502-74746521 Msa0140500:CDS 45.0%
!! AAAGAATAATTTATAAATTT+GGG + chr1_3:74746078-74746097 Msa0140500:intron 5.0%
ATCAACGCAACGAACCACCA+TGG + chr1_3:74742054-74742073 Msa0140500:exon 50.0%
AGTTAGAAATGCCGCCATGG+TGG - chr1_3:74742071-74742090 None:intergenic 50.0%
TCGAGTTAGAAATGCCGCCA+TGG - chr1_3:74742074-74742093 None:intergenic 50.0%
!! GGTGTGGTTGATGAGAGAGA+TGG - chr1_3:74742160-74742179 None:intergenic 50.0%
CTTCGATATTCCAACGGGAG+AGG - chr1_3:74742218-74742237 None:intergenic 50.0%
GCCGTCTTCGATATTCCAAC+GGG - chr1_3:74742223-74742242 None:intergenic 50.0%
CGCCGTCTTCGATATTCCAA+CGG - chr1_3:74742224-74742243 None:intergenic 50.0%
CGTTGGAATATCGAAGACGG+CGG + chr1_3:74742222-74742241 Msa0140500:CDS 50.0%
CTCATGAATTGGGCTCGTAC+TGG + chr1_3:74742271-74742290 Msa0140500:CDS 50.0%
AAGAGCGGGAGCCATCTTAT+TGG - chr1_3:74742446-74742465 None:intergenic 50.0%
CGACTGTTTAGGAGGACTTG+TGG + chr1_3:74742771-74742790 Msa0140500:intron 50.0%
AGCGTATAAGCCCTCCAGAA+AGG + chr1_3:74743238-74743257 Msa0140500:intron 50.0%
AAGGCTCCAAGACCTCCAAA+AGG + chr1_3:74743257-74743276 Msa0140500:intron 50.0%
!! GGTTTCTAGTACACCTCCAG+AGG + chr1_3:74743278-74743297 Msa0140500:intron 50.0%
TAGTAAGGCGGCACCTCAAA+GGG - chr1_3:74743326-74743345 None:intergenic 50.0%
TTAGTAAGGCGGCACCTCAA+AGG - chr1_3:74743327-74743346 None:intergenic 50.0%
!! GCTTTTTGGGCGGTTTCTAG+AGG - chr1_3:74743361-74743380 None:intergenic 50.0%
GCTTGGTTTCCAAGCAACAG+GGG - chr1_3:74743401-74743420 None:intergenic 50.0%
TTATAGCCCGCTATGGGCTT+GGG - chr1_3:74743432-74743451 None:intergenic 50.0%
TTTATAGCCCGCTATGGGCT+TGG - chr1_3:74743433-74743452 None:intergenic 50.0%
!! CTTGAGAGTGCTCTCAAGAG+TGG - chr1_3:74743458-74743477 None:intergenic 50.0%
!! CACTCTTGAGAGCACTCTCA+AGG + chr1_3:74743456-74743475 Msa0140500:intron 50.0%
TACGTGCTCGGATGTTGTTC+TGG + chr1_3:74743718-74743737 Msa0140500:intron 50.0%
TGGGCAATCAAGGACCTGTT+TGG - chr1_3:74744758-74744777 None:intergenic 50.0%
CTGCACACTTGGCAGGTAAA+TGG - chr1_3:74745375-74745394 None:intergenic 50.0%
CATTTACCTGCCAAGTGTGC+AGG + chr1_3:74745373-74745392 Msa0140500:intron 50.0%
CAATAACCTGCACACTTGGC+AGG - chr1_3:74745382-74745401 None:intergenic 50.0%
TGAATGTCACTGCATGTCGG+AGG + chr1_3:74745594-74745613 Msa0140500:intron 50.0%
TGTCGGAGGAGGTTCATATG+TGG + chr1_3:74745608-74745627 Msa0140500:intron 50.0%
AATCACTTGGGATTTGGGCG+TGG + chr1_3:74745924-74745943 Msa0140500:intron 50.0%
!! AGGCCCTTAAAGAGTGTTCC+GGG - chr1_3:74745991-74746010 None:intergenic 50.0%
!! CCTAGATGGGTTGTCTCCAT+GGG + chr1_3:74746338-74746357 Msa0140500:CDS 50.0%
GGAAGTTGTGCTAATGGAGG+AGG + chr1_3:74746359-74746378 Msa0140500:CDS 50.0%
GAACGATCCTGTCACATCCT+CGG - chr1_3:74746412-74746431 None:intergenic 50.0%
GTAAAGCCTCAGCAGTTGGA+GGG - chr1_3:74746460-74746479 None:intergenic 50.0%
AGTAAAGCCTCAGCAGTTGG+AGG - chr1_3:74746461-74746480 None:intergenic 50.0%
AACGCAACGAACCACCATGG+CGG + chr1_3:74742057-74742076 Msa0140500:exon 55.0%
! TGGAGAGACGCTAAGCGTTG+TGG - chr1_3:74742127-74742146 None:intergenic 55.0%
CGATATTCCAACGGGAGAGG+TGG - chr1_3:74742215-74742234 None:intergenic 55.0%
CAGGCGAGTCCGAAAGTCAT+AGG - chr1_3:74742307-74742326 None:intergenic 55.0%
!! TGGTGCTGCTCGTTACGATC+TGG + chr1_3:74742351-74742370 Msa0140500:CDS 55.0%
GGTCTTGGAGCCTTTCTGGA+GGG - chr1_3:74743251-74743270 None:intergenic 55.0%
AGGTCTTGGAGCCTTTCTGG+AGG - chr1_3:74743252-74743271 None:intergenic 55.0%
TGGAGGTCTTGGAGCCTTTC+TGG - chr1_3:74743255-74743274 None:intergenic 55.0%
GGGCTTATGAATCCCTCTGG+AGG - chr1_3:74743294-74743313 None:intergenic 55.0%
CCAGGGCTTATGAATCCCTC+TGG - chr1_3:74743297-74743316 None:intergenic 55.0%
CCAGAGGGATTCATAAGCCC+TGG + chr1_3:74743294-74743313 Msa0140500:intron 55.0%
ACCAAAGCCCAAGCCCATAG+CGG + chr1_3:74743422-74743441 Msa0140500:intron 55.0%
ATGTCACTGCATGTCGGAGG+AGG + chr1_3:74745597-74745616 Msa0140500:intron 55.0%
GAAATGCTAACACGTGCCCC+CGG + chr1_3:74745970-74745989 Msa0140500:intron 55.0%
TGCCCCCGGAACACTCTTTA+AGG + chr1_3:74745984-74746003 Msa0140500:intron 55.0%
GCCCCCGGAACACTCTTTAA+GGG + chr1_3:74745985-74746004 Msa0140500:intron 55.0%
!! GCCCTTAAAGAGTGTTCCGG+GGG - chr1_3:74745989-74746008 None:intergenic 55.0%
!! GGCCCTTAAAGAGTGTTCCG+GGG - chr1_3:74745990-74746009 None:intergenic 55.0%
!! GGATCCTTAAAGAGTGCCCC+CGG + chr1_3:74746099-74746118 Msa0140500:intron 55.0%
!! GATCCTTAAAGAGTGCCCCC+GGG + chr1_3:74746100-74746119 Msa0140500:intron 55.0%
!! ATCCTTAAAGAGTGCCCCCG+GGG + chr1_3:74746101-74746120 Msa0140500:intron 55.0%
AGTCTTGCTAACGAGTGCCC+CGG - chr1_3:74746121-74746140 None:intergenic 55.0%
ACCAAATGCCCGAGCCTAGA+TGG + chr1_3:74746324-74746343 Msa0140500:CDS 55.0%
CCAAATGCCCGAGCCTAGAT+GGG + chr1_3:74746325-74746344 Msa0140500:CDS 55.0%
GAGACAACCCATCTAGGCTC+GGG - chr1_3:74746335-74746354 None:intergenic 55.0%
GGAGACAACCCATCTAGGCT+CGG - chr1_3:74746336-74746355 None:intergenic 55.0%
!! GCCTAGATGGGTTGTCTCCA+TGG + chr1_3:74746337-74746356 Msa0140500:CDS 55.0%
CCCATGGAGACAACCCATCT+AGG - chr1_3:74746341-74746360 None:intergenic 55.0%
CTGTTGTCCGAGGATGTGAC+AGG + chr1_3:74746402-74746421 Msa0140500:CDS 55.0%
GCAAGGACTTCCTCCATTGG+TGG + chr1_3:74746519-74746538 Msa0140500:CDS 55.0%
CTCACTGAGTCCACCAATGG+AGG - chr1_3:74746532-74746551 None:intergenic 55.0%
!! CTCCATTGGTGGACTCAGTG+AGG + chr1_3:74746530-74746549 Msa0140500:CDS 55.0%
GACCTCACTGAGTCCACCAA+TGG - chr1_3:74746535-74746554 None:intergenic 55.0%
GGCGGAGTACGTGATCTCGA+AGG + chr1_3:74742240-74742259 Msa0140500:CDS 60.0%
!! GGGCTCGTACTGGCTCAATC+TGG + chr1_3:74742281-74742300 Msa0140500:CDS 60.0%
! GGGCTTGGGCTTTGGTTGCT+TGG - chr1_3:74743418-74743437 None:intergenic 60.0%
CCAAAGCCCAAGCCCATAGC+GGG + chr1_3:74743423-74743442 Msa0140500:intron 60.0%
TCTTGCTAACGAGTGCCCCG+GGG - chr1_3:74746119-74746138 None:intergenic 60.0%
GTCTTGCTAACGAGTGCCCC+GGG - chr1_3:74746120-74746139 None:intergenic 60.0%
CCCATCTAGGCTCGGGCATT+TGG - chr1_3:74746328-74746347 None:intergenic 60.0%
GGCGCAAGGACTTCCTCCAT+TGG + chr1_3:74746516-74746535 Msa0140500:CDS 60.0%
TGGAGCGTAAGGGGTGGGTG+TGG - chr1_3:74742176-74742195 None:intergenic 65.0%
AGGAGGCGGTGGAGCGTAAG+GGG - chr1_3:74742185-74742204 None:intergenic 65.0%
GAGGAGGCGGTGGAGCGTAA+GGG - chr1_3:74742186-74742205 None:intergenic 65.0%
GAGGTGGTCGATGGAGGAGG+CGG - chr1_3:74742199-74742218 None:intergenic 65.0%
GGAGAGGTGGTCGATGGAGG+AGG - chr1_3:74742202-74742221 None:intergenic 65.0%
ACGGGAGAGGTGGTCGATGG+AGG - chr1_3:74742205-74742224 None:intergenic 65.0%
CCAACGGGAGAGGTGGTCGA+TGG - chr1_3:74742208-74742227 None:intergenic 65.0%
CCATCGACCACCTCTCCCGT+TGG + chr1_3:74742205-74742224 Msa0140500:CDS 65.0%
! ACCTCAAAGGGAGCGCGCCA+GGG - chr1_3:74743314-74743333 None:intergenic 65.0%
CCCGCTATGGGCTTGGGCTT+TGG - chr1_3:74743426-74743445 None:intergenic 65.0%
!! TGCCCCGGGGGCACTCTTTA+AGG - chr1_3:74746106-74746125 None:intergenic 65.0%
CTTGCTAACGAGTGCCCCGG+GGG - chr1_3:74746118-74746137 None:intergenic 65.0%
TCAGCAGTTGGAGGGCAGCC+GGG - chr1_3:74746452-74746471 None:intergenic 65.0%
CTCAGCAGTTGGAGGGCAGC+CGG - chr1_3:74746453-74746472 None:intergenic 65.0%
GGCGGTGGAGCGTAAGGGGT+GGG - chr1_3:74742181-74742200 None:intergenic 70.0%
AGGCGGTGGAGCGTAAGGGG+TGG - chr1_3:74742182-74742201 None:intergenic 70.0%
GGAGGAGGCGGTGGAGCGTA+AGG - chr1_3:74742187-74742206 None:intergenic 70.0%
GTGGTCGATGGAGGAGGCGG+TGG - chr1_3:74742196-74742215 None:intergenic 70.0%
! CACCTCAAAGGGAGCGCGCC+AGG - chr1_3:74743315-74743334 None:intergenic 70.0%
CGGCTGCCCTCCAACTGCTG+AGG + chr1_3:74746451-74746470 Msa0140500:CDS 70.0%
GCCCTGGCGCGCTCCCTTTG+AGG + chr1_3:74743310-74743329 Msa0140500:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 74741941 74746886 74741941 ID=Msa0140500;Name=Msa0140500
chr1_3 mRNA 74741941 74746886 74741941 ID=Msa0140500-mRNA-1;Parent=Msa0140500;Name=Msa0140500-mRNA-1;_AED=0.00;_eAED=0.00;_QI=132|1|1|1|1|1|2|336|210
chr1_3 exon 74741941 74742470 74741941 ID=Msa0140500-mRNA-1:exon:26072;Parent=Msa0140500-mRNA-1
chr1_3 exon 74746316 74746886 74746316 ID=Msa0140500-mRNA-1:exon:26073;Parent=Msa0140500-mRNA-1
chr1_3 five_prime_UTR 74741941 74742072 74741941 ID=Msa0140500-mRNA-1:five_prime_utr;Parent=Msa0140500-mRNA-1
chr1_3 CDS 74742073 74742470 74742073 ID=Msa0140500-mRNA-1:cds;Parent=Msa0140500-mRNA-1
chr1_3 CDS 74746316 74746550 74746316 ID=Msa0140500-mRNA-1:cds;Parent=Msa0140500-mRNA-1
chr1_3 three_prime_UTR 74746551 74746886 74746551 ID=Msa0140500-mRNA-1:three_prime_utr;Parent=Msa0140500-mRNA-1
Gene Sequence

>Msa0140500

ATGGCGGCATTTCTAACTCGAACATCTTCACGATTCTCTCAATTATCTTCACCACAACGCTTAGCGTCTCTCCATACAACCCTTCCATCTCTCTCATCAACCACACCCACCCCTTACGCTCCACCGCCTCCTCCATCGACCACCTCTCCCGTTGGAATATCGAAGACGGCGGAGTACGTGATCTCGAAGGTTGATAATCTCATGAATTGGGCTCGTACTGGCTCAATCTGGCCTATGACTTTCGGACTCGCCTGTTGTGCTGTTGAAATGATGCATACTGGTGCTGCTCGTTACGATCTGGATCGATTTGGTATCATTTTTCGACCTAGTCCTCGTCAATCTGATTGTATGATTGTTGCTGGTACTCTTACCAATAAGATGGCTCCCGCTCTTCGCAAGGTGTATGACCAAATGCCCGAGCCTAGATGGGTTGTCTCCATGGGAAGTTGTGCTAATGGAGGAGGATACTACCACTACTCTTACTCTGTTGTCCGAGGATGTGACAGGATCGTTCCTGTTGATATTTATGTTCCCGGCTGCCCTCCAACTGCTGAGGCTTTACTGTATGGACTCCTCCAACTGCAGAAGAAGATCAATAGGCGCAAGGACTTCCTCCATTGGTGGACTCAGTGA

Protein sequence

>Msa0140500

MAAFLTRTSSRFSQLSSPQRLASLHTTLPSLSSTTPTPYAPPPPPSTTSPVGISKTAEYVISKVDNLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLHWWTQ*