AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1445390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1445390 MtrunA17_Chr3g0135651 99.524 210 1 0 1 210 1 210 3.86e-158 435
Msa1445390 MtrunA17_Chr7g0229341 46.753 154 80 2 50 201 7 160 1.69e-51 166
Msa1445390 MtrunA17_CPg0493361 46.753 154 80 2 50 201 7 160 5.34e-51 164
Msa1445390 MtrunA17_Chr4g0016411 46.753 154 80 2 50 201 7 160 5.34e-51 164
Msa1445390 MtrunA17_Chr7g0222091 38.562 153 72 2 50 201 7 138 3.21e-36 126
Msa1445390 MtrunA17_Chr4g0015251 51.948 77 36 1 126 201 2 78 8.04e-25 95.1
Msa1445390 MtrunA17_Chr7g0227431 42.708 96 53 2 50 144 7 101 4.20e-24 92.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1445390 AT5G11770.1 80.275 218 35 3 1 210 1 218 1.25e-122 346
Msa1445390 ATCG00430.1 46.104 154 81 2 50 201 7 160 4.03e-50 162

Find 100 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTTCTGTTTGTTGTTTA+TGG -0.031413 tig0031099:-2359 None:intergenic
TAGTGTAACATTGATTATTT+TGG 0.150032 tig0031099:+7205 Msa1445390:three_prime_UTR
CCTGTTGATATTTATGTTCC+CGG 0.283336 tig0031099:+6796 Msa1445390:CDS
ACCAAATGCCCGAGCCTAGA+TGG 0.309620 tig0031099:+6689 Msa1445390:CDS
CCCATCTAGGCTCGGGCATT+TGG 0.315314 tig0031099:-6690 None:intergenic
ACTTTATAATAAGCAATTCA+TGG 0.367407 tig0031099:+6948 Msa1445390:three_prime_UTR
AGGTTGATAATCTCATGAAT+TGG 0.373372 tig0031099:+2625 Msa1445390:CDS
AGGCGGTGGAGCGTAAGGGG+TGG 0.374478 tig0031099:-2544 None:intergenic
GCTATGAATCACCCTTTGTT+TGG 0.380093 tig0031099:+6983 Msa1445390:three_prime_UTR
AAGAGCGGGAGCCATCTTAT+TGG 0.382683 tig0031099:-2808 None:intergenic
AGAGAGATGGAAGGGTTGTA+TGG 0.387527 tig0031099:-2509 None:intergenic
TTCTGTTTGTTGTTTATGGA+TGG 0.391969 tig0031099:-2355 None:intergenic
GGAGGAGGCGGTGGAGCGTA+AGG 0.398546 tig0031099:-2549 None:intergenic
CTCAGCAGTTGGAGGGCAGC+CGG 0.406470 tig0031099:-6815 None:intergenic
GTGGTCGATGGAGGAGGCGG+TGG 0.407856 tig0031099:-2558 None:intergenic
TCAATCTGGCCTATGACTTT+CGG 0.408619 tig0031099:+2660 Msa1445390:CDS
TCTGATTGTATGATTGTTGC+TGG 0.414093 tig0031099:+2777 Msa1445390:CDS
TCAATGTTACACTATTAATC+TGG 0.418095 tig0031099:-7196 None:intergenic
GAGGTGGTCGATGGAGGAGG+CGG 0.422742 tig0031099:-2561 None:intergenic
CATCATTTCAACAGCACAAC+AGG 0.430335 tig0031099:-2688 None:intergenic
TGATCTTCTTCTGCAGTTGG+AGG 0.439435 tig0031099:-6855 None:intergenic
CACATAAAACATACAGAGTA+AGG 0.442964 tig0031099:-7028 None:intergenic
GGTTGATAATCTCATGAATT+GGG 0.445690 tig0031099:+2626 Msa1445390:CDS
AGGAGGCGGTGGAGCGTAAG+GGG 0.451460 tig0031099:-2547 None:intergenic
GCCTAGATGGGTTGTCTCCA+TGG 0.454702 tig0031099:+6702 Msa1445390:CDS
CGTTACGATCTGGATCGATT+TGG 0.459982 tig0031099:+2726 Msa1445390:CDS
CAGGCGAGTCCGAAAGTCAT+AGG 0.465570 tig0031099:-2669 None:intergenic
ACTGCTGAGGCTTTACTGTA+TGG 0.466993 tig0031099:+6829 Msa1445390:CDS
TATTGATCTTCTTCTGCAGT+TGG 0.469979 tig0031099:-6858 None:intergenic
GGCGGTGGAGCGTAAGGGGT+GGG 0.470168 tig0031099:-2543 None:intergenic
GTTAATGCTTCTTATGTACC+TGG 0.471184 tig0031099:+7101 Msa1445390:three_prime_UTR
GGTCGATTAAGTTTATCTCT+TGG 0.471614 tig0031099:+6916 Msa1445390:three_prime_UTR
TGGTGCTGCTCGTTACGATC+TGG 0.473692 tig0031099:+2716 Msa1445390:CDS
AACTGCAGAAGAAGATCAAT+AGG 0.480409 tig0031099:+6860 Msa1445390:CDS
CTCATGAATTGGGCTCGTAC+TGG 0.482560 tig0031099:+2636 Msa1445390:CDS
TTGCTTATTATAAAGTAGCT+TGG 0.484390 tig0031099:-6941 None:intergenic
CCGGGAACATAAATATCAAC+AGG 0.485170 tig0031099:-6796 None:intergenic
GGAGAGGTGGTCGATGGAGG+AGG 0.486052 tig0031099:-2564 None:intergenic
TCCATGGGAAGTTGTGCTAA+TGG 0.486720 tig0031099:+6718 Msa1445390:CDS
ATGAATCACCCTTTGTTTGG+TGG 0.496345 tig0031099:+6986 Msa1445390:three_prime_UTR
CAATCAGATTGACGAGGACT+AGG 0.496509 tig0031099:-2762 None:intergenic
GCCGTCTTCGATATTCCAAC+GGG 0.500071 tig0031099:-2585 None:intergenic
TGGAGCGTAAGGGGTGGGTG+TGG 0.502797 tig0031099:-2538 None:intergenic
GGGCTCGTACTGGCTCAATC+TGG 0.503571 tig0031099:+2646 Msa1445390:CDS
CCCATGGAGACAACCCATCT+AGG 0.504105 tig0031099:-6703 None:intergenic
GAAACATACTTGCGAAGAGC+GGG 0.507595 tig0031099:-2822 None:intergenic
TCAGCAGTTGGAGGGCAGCC+GGG 0.508884 tig0031099:-6814 None:intergenic
CAGAATATCCACCAAACAAA+GGG 0.511142 tig0031099:-6994 None:intergenic
CTTCGATATTCCAACGGGAG+AGG 0.515451 tig0031099:-2580 None:intergenic
TACAGTAAAGCCTCAGCAGT+TGG 0.522747 tig0031099:-6826 None:intergenic
CCATCGACCACCTCTCCCGT+TGG 0.528192 tig0031099:+2570 Msa1445390:CDS
GAGGAGGCGGTGGAGCGTAA+GGG 0.528912 tig0031099:-2548 None:intergenic
TGAGTGGTTTGTTTAATCCC+AGG 0.531284 tig0031099:-7119 None:intergenic
CCAAATGCCCGAGCCTAGAT+GGG 0.537493 tig0031099:+6690 Msa1445390:CDS
GAGACAACCCATCTAGGCTC+GGG 0.544154 tig0031099:-6697 None:intergenic
CCTAGATGGGTTGTCTCCAT+GGG 0.544839 tig0031099:+6703 Msa1445390:CDS
CGGCTGCCCTCCAACTGCTG+AGG 0.547600 tig0031099:+6816 Msa1445390:CDS
ACGGGAGAGGTGGTCGATGG+AGG 0.553280 tig0031099:-2567 None:intergenic
TCCATTAGCACAACTTCCCA+TGG 0.554029 tig0031099:-6719 None:intergenic
TTAATGCTTCTTATGTACCT+GGG 0.557163 tig0031099:+7102 Msa1445390:three_prime_UTR
AAGAAGAACGAGGGGAAGAA+CGG 0.557431 tig0031099:+2392 Msa1445390:five_prime_UTR
ACAAAGGGTGATTCATAGCA+AGG 0.558007 tig0031099:-6979 None:intergenic
GGAAGTTGTGCTAATGGAGG+AGG 0.559773 tig0031099:+6724 Msa1445390:CDS
CGATATTCCAACGGGAGAGG+TGG 0.560126 tig0031099:-2577 None:intergenic
GGAGACAACCCATCTAGGCT+CGG 0.561380 tig0031099:-6698 None:intergenic
TGGTACTCTTACCAATAAGA+TGG 0.563740 tig0031099:+2797 Msa1445390:CDS
TTAATCTGGAGTAAGAGAGA+TGG 0.563947 tig0031099:-7182 None:intergenic
CGCCGTCTTCGATATTCCAA+CGG 0.565051 tig0031099:-2586 None:intergenic
CTGTTGTCCGAGGATGTGAC+AGG 0.567271 tig0031099:+6767 Msa1445390:CDS
GGCGCAAGGACTTCCTCCAT+TGG 0.568783 tig0031099:+6881 Msa1445390:CDS
AGAAACATACTTGCGAAGAG+CGG 0.569989 tig0031099:-2823 None:intergenic
GAACGATCCTGTCACATCCT+CGG 0.578017 tig0031099:-6774 None:intergenic
ATCCATAAACAACAAACAGA+AGG 0.587191 tig0031099:+2357 Msa1445390:five_prime_UTR
GCAAGGACTTCCTCCATTGG+TGG 0.590384 tig0031099:+6884 Msa1445390:CDS
CTCACTGAGTCCACCAATGG+AGG 0.591840 tig0031099:-6894 None:intergenic
GTAAAGCCTCAGCAGTTGGA+GGG 0.606304 tig0031099:-6822 None:intergenic
ACAGAATATCCACCAAACAA+AGG 0.607833 tig0031099:-6995 None:intergenic
GCTGTTGAAATGATGCATAC+TGG 0.608176 tig0031099:+2696 Msa1445390:CDS
AGTAAAGCCTCAGCAGTTGG+AGG 0.610038 tig0031099:-6823 None:intergenic
CATAAACAACAAACAGAAGG+AGG 0.610565 tig0031099:+2360 Msa1445390:five_prime_UTR
GACCTCACTGAGTCCACCAA+TGG 0.613212 tig0031099:-6897 None:intergenic
TACTCTTACTCTGTTGTCCG+AGG 0.620931 tig0031099:+6757 Msa1445390:CDS
CCAACGGGAGAGGTGGTCGA+TGG 0.621156 tig0031099:-2570 None:intergenic
GGTGTGGTTGATGAGAGAGA+TGG 0.624092 tig0031099:-2522 None:intergenic
TCGAGTTAGAAATGCCGCCA+TGG 0.627508 tig0031099:-2436 None:intergenic
GAAGAAGATCAATAGGCGCA+AGG 0.632047 tig0031099:+6867 Msa1445390:CDS
TCCCGTTGGAATATCGAAGA+CGG 0.641180 tig0031099:+2584 Msa1445390:CDS
CTCCATTGGTGGACTCAGTG+AGG 0.646971 tig0031099:+6895 Msa1445390:CDS
TGGTTGATGAGAGAGATGGA+AGG 0.649649 tig0031099:-2518 None:intergenic
ATGGGAAGTTGTGCTAATGG+AGG 0.660590 tig0031099:+6721 Msa1445390:CDS
GGTTGATGAGAGAGATGGAA+GGG 0.665700 tig0031099:-2517 None:intergenic
ACGTATGAGTCAAACATGAG+TGG 0.672071 tig0031099:-7135 None:intergenic
AGTTAGAAATGCCGCCATGG+TGG 0.674876 tig0031099:-2433 None:intergenic
GGACAACAGAGTAAGAGTAG+TGG 0.675431 tig0031099:-6753 None:intergenic
TGGAGAGACGCTAAGCGTTG+TGG 0.684822 tig0031099:-2489 None:intergenic
ATCAACGCAACGAACCACCA+TGG 0.685246 tig0031099:+2419 Msa1445390:exon
GGCGGAGTACGTGATCTCGA+AGG 0.687555 tig0031099:+2605 Msa1445390:CDS
CGTTGGAATATCGAAGACGG+CGG 0.718228 tig0031099:+2587 Msa1445390:CDS
AACGCAACGAACCACCATGG+CGG 0.727863 tig0031099:+2422 Msa1445390:exon
ATCATACAATCAGATTGACG+AGG 0.742801 tig0031099:-2768 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAATAAATGGATTTTTA+TGG - tig0031099:5456-5475 None:intergenic 10.0%
!!! AACTCATTTTTTAAAATAAA+TGG - tig0031099:5466-5485 None:intergenic 10.0%
!! GAAAGAATAATTTATAAATT+TGG + tig0031099:6442-6461 Msa1445390:intron 10.0%
!! AAAATGACATAAAAGTTATA+TGG + tig0031099:4356-4375 Msa1445390:intron 15.0%
!! TTTATGCTATTAATTACTAT+AGG + tig0031099:4649-4668 Msa1445390:intron 15.0%
!! ACTATCAATATATTATTACT+TGG + tig0031099:4692-4711 Msa1445390:intron 15.0%
!!! TGAAAAAAGTGATTTTTTTA+AGG + tig0031099:5630-5649 Msa1445390:intron 15.0%
!!! GGAAAAAAATAGATTTTTTT+TGG + tig0031099:5651-5670 Msa1445390:intron 15.0%
!! ATATATTGATAGATAAAGAT+GGG - tig0031099:6195-6214 None:intergenic 15.0%
!! TCATAAAAACTTACTATTAA+AGG - tig0031099:6376-6395 None:intergenic 15.0%
!!! TAAGTTTTTATGAAAATTTG+TGG + tig0031099:6383-6402 Msa1445390:intron 15.0%
!! AAGCAAATTAAAATTAAAGA+CGG - tig0031099:6594-6613 None:intergenic 15.0%
!! AGAATGTGAAAATTTAACAA+AGG + tig0031099:2968-2987 Msa1445390:intron 20.0%
!! GAATGTGAAAATTTAACAAA+GGG + tig0031099:2969-2988 Msa1445390:intron 20.0%
!! AATGTGAAAATTTAACAAAG+GGG + tig0031099:2970-2989 Msa1445390:intron 20.0%
!!! AAGTTAAATTGTTTTTGTAC+AGG - tig0031099:3245-3264 None:intergenic 20.0%
!!! TATCTTTAAGTTTTTCTGTT+TGG - tig0031099:3993-4012 None:intergenic 20.0%
!!! TTTTTTTTTTCTGTAACAAC+TGG - tig0031099:4244-4263 None:intergenic 20.0%
!! TCTAACAATATATCATTACT+TGG + tig0031099:4401-4420 Msa1445390:intron 20.0%
!! TTTAGTCTCATAAATAAAGA+GGG - tig0031099:4574-4593 None:intergenic 20.0%
!!! TTTTAGTCTCATAAATAAAG+AGG - tig0031099:4575-4594 None:intergenic 20.0%
!! ATTGACTATTATCTTATCAT+AGG + tig0031099:5184-5203 Msa1445390:intron 20.0%
!! GGAAGATTTCATTAATAAAA+TGG - tig0031099:5272-5291 None:intergenic 20.0%
!!! ATCTATTTTTTTCAACAACA+AGG - tig0031099:5511-5530 None:intergenic 20.0%
!!! ATCTAAAATGAAAAGCTATT+AGG - tig0031099:5550-5569 None:intergenic 20.0%
!!! CAATTTGGTATTTTGATAAT+GGG - tig0031099:5698-5717 None:intergenic 20.0%
!!! TCAATTTGGTATTTTGATAA+TGG - tig0031099:5699-5718 None:intergenic 20.0%
!! AATGTGAAACAATATAAATG+GGG - tig0031099:5806-5825 None:intergenic 20.0%
!! CAATGTGAAACAATATAAAT+GGG - tig0031099:5807-5826 None:intergenic 20.0%
!! AAAAAGGAAAATTAGTATCA+TGG - tig0031099:6130-6149 None:intergenic 20.0%
!!! TGATACTAATTTTCCTTTTT+TGG + tig0031099:6130-6149 Msa1445390:intron 20.0%
!! GATATATTGATAGATAAAGA+TGG - tig0031099:6196-6215 None:intergenic 20.0%
!!! TGAATTTGTTTTTAATCACT+TGG + tig0031099:6276-6295 Msa1445390:intron 20.0%
!!! GAATTTGTTTTTAATCACTT+GGG + tig0031099:6277-6296 Msa1445390:intron 20.0%
!! ATCCCTCTTATATTAAAATT+TGG + tig0031099:6312-6331 Msa1445390:intron 20.0%
!! TCCCTCTTATATTAAAATTT+GGG + tig0031099:6313-6332 Msa1445390:intron 20.0%
!!! TCCCAAATTTTAATATAAGA+GGG - tig0031099:6317-6336 None:intergenic 20.0%
!!! TTCCCAAATTTTAATATAAG+AGG - tig0031099:6318-6337 None:intergenic 20.0%
!! AAATTGTATAGACAGAATAA+TGG - tig0031099:6532-6551 None:intergenic 20.0%
!! ACTTTATAATAAGCAATTCA+TGG + tig0031099:6948-6967 Msa1445390:three_prime_UTR 20.0%
!!! TAGTGTAACATTGATTATTT+TGG + tig0031099:7205-7224 Msa1445390:three_prime_UTR 20.0%
!!! TAACATTGATTATTTTGGAA+TGG + tig0031099:7210-7229 Msa1445390:three_prime_UTR 20.0%
!!! AACATTGATTATTTTGGAAT+GGG + tig0031099:7211-7230 Msa1445390:three_prime_UTR 20.0%
! ACAAATCAATGCTTCTATAA+GGG - tig0031099:2912-2931 None:intergenic 25.0%
! AACAAATCAATGCTTCTATA+AGG - tig0031099:2913-2932 None:intergenic 25.0%
! ATGTGAAAATTTAACAAAGG+GGG + tig0031099:2971-2990 Msa1445390:intron 25.0%
! TTAAATTGCTCTCTTGATTT+AGG + tig0031099:3034-3053 Msa1445390:intron 25.0%
! AATTTAGCGCTTATTGTATA+AGG + tig0031099:3078-3097 Msa1445390:intron 25.0%
! ATTTAGCGCTTATTGTATAA+GGG + tig0031099:3079-3098 Msa1445390:intron 25.0%
!!! ACAACTTTCATTTTAGTTGT+TGG - tig0031099:3356-3375 None:intergenic 25.0%
! AAACACTCGTAAAACTAATT+GGG - tig0031099:3464-3483 None:intergenic 25.0%
! ACGTTCAAATTCAATTGAAA+TGG - tig0031099:4112-4131 None:intergenic 25.0%
! TGTCTACAAAAATGTTCAAT+TGG + tig0031099:4216-4235 Msa1445390:intron 25.0%
! GTCTACAAAAATGTTCAATT+GGG + tig0031099:4217-4236 Msa1445390:intron 25.0%
! ATTCTGCTAGTAATTACTAT+AGG + tig0031099:4294-4313 Msa1445390:intron 25.0%
! AGATAGTTCAAATTCAACAA+AGG + tig0031099:4489-4508 Msa1445390:intron 25.0%
!! AGGGTTTTCAAATTCAAAAA+AGG + tig0031099:4784-4803 Msa1445390:intron 25.0%
!! GTTTTCAAATTCAAAAAAGG+TGG + tig0031099:4787-4806 Msa1445390:intron 25.0%
! AAGACCTAACTAAATTAAGA+GGG - tig0031099:4870-4889 None:intergenic 25.0%
! TAACTTATGAAAACAACTTG+TGG - tig0031099:5020-5039 None:intergenic 25.0%
!!! GTTGTTTTCATAAGTTATCA+TGG + tig0031099:5023-5042 Msa1445390:intron 25.0%
! GCTTAGTATCAAACAATATT+GGG + tig0031099:5322-5341 Msa1445390:intron 25.0%
!!! TCATTTTTGAGTGTTTGTTT+AGG - tig0031099:5613-5632 None:intergenic 25.0%
! GCAATGTGAAACAATATAAA+TGG - tig0031099:5808-5827 None:intergenic 25.0%
! TGACTTAAGTGTGTATTATT+GGG - tig0031099:5872-5891 None:intergenic 25.0%
! ATGACTTAAGTGTGTATTAT+TGG - tig0031099:5873-5892 None:intergenic 25.0%
! ATAATACACACTTAAGTCAT+TGG + tig0031099:5873-5892 Msa1445390:intron 25.0%
! TAATACACACTTAAGTCATT+GGG + tig0031099:5874-5893 Msa1445390:intron 25.0%
!!! ACTAATTTTCCTTTTTTGGA+AGG + tig0031099:6134-6153 Msa1445390:intron 25.0%
!!! CATTTTTTTCCTTCCAAAAA+AGG - tig0031099:6146-6165 None:intergenic 25.0%
!! TTTTTAATCACTTGGGATTT+GGG + tig0031099:6284-6303 Msa1445390:intron 25.0%
! AATTTGTGGATTTAATGCAT+TGG + tig0031099:6397-6416 Msa1445390:intron 25.0%
! TAAAATTAAAGACGGAATGA+TGG - tig0031099:6586-6605 None:intergenic 25.0%
!!! TTTAATTTGCTTCTTAGACT+TGG + tig0031099:6602-6621 Msa1445390:intron 25.0%
! TTGCTTATTATAAAGTAGCT+TGG - tig0031099:6944-6963 None:intergenic 25.0%
! TCAATGTTACACTATTAATC+TGG - tig0031099:7199-7218 None:intergenic 25.0%
!! TTCTGTTTGTTGTTTATGGA+TGG - tig0031099:2358-2377 None:intergenic 30.0%
ATCCATAAACAACAAACAGA+AGG + tig0031099:2357-2376 Msa1445390:five_prime_UTR 30.0%
!! AGGTTGATAATCTCATGAAT+TGG + tig0031099:2625-2644 Msa1445390:CDS 30.0%
!! GGTTGATAATCTCATGAATT+GGG + tig0031099:2626-2645 Msa1445390:CDS 30.0%
! TTTCTTTTCCCTCTTTTCTA+GGG + tig0031099:2841-2860 Msa1445390:intron 30.0%
TGTAAAAACCCTAGAAAAGA+GGG - tig0031099:2852-2871 None:intergenic 30.0%
ATGTAAAAACCCTAGAAAAG+AGG - tig0031099:2853-2872 None:intergenic 30.0%
TGGATAAACAGTTTATTTGC+AGG - tig0031099:3336-3355 None:intergenic 30.0%
AATAAGCTGAAAACAGCTTA+TGG + tig0031099:3406-3425 Msa1445390:intron 30.0%
CAAACACTCGTAAAACTAAT+TGG - tig0031099:3465-3484 None:intergenic 30.0%
GAGAATTGAGCTTATCTATT+GGG - tig0031099:3494-3513 None:intergenic 30.0%
TGAGAATTGAGCTTATCTAT+TGG - tig0031099:3495-3514 None:intergenic 30.0%
!! CGCTTTTAGGAATATTATGA+CGG - tig0031099:3587-3606 None:intergenic 30.0%
!! TAAAGGATTCTAGGATTCTA+TGG - tig0031099:3867-3886 None:intergenic 30.0%
TGTGTACTTGCAAAAAAGTA+CGG - tig0031099:3890-3909 None:intergenic 30.0%
!! GCTTATCTTTGGTATTTTGA+AGG - tig0031099:3969-3988 None:intergenic 30.0%
TATGACTTAAACTAGGAAGA+AGG - tig0031099:4037-4056 None:intergenic 30.0%
TTCTTCCTAGTTTAAGTCAT+AGG + tig0031099:4036-4055 Msa1445390:intron 30.0%
TCTTCCTAGTTTAAGTCATA+GGG + tig0031099:4037-4056 Msa1445390:intron 30.0%
! AAGTTACAGAGTCTTATATG+TGG - tig0031099:4727-4746 None:intergenic 30.0%
TTCTTTATCTGCAATCATGA+AGG + tig0031099:4764-4783 Msa1445390:intron 30.0%
TCTTTATCTGCAATCATGAA+GGG + tig0031099:4765-4784 Msa1445390:intron 30.0%
AATGCCCTCTTAATTTAGTT+AGG + tig0031099:4863-4882 Msa1445390:intron 30.0%
CAAGACCTAACTAAATTAAG+AGG - tig0031099:4871-4890 None:intergenic 30.0%
AAGTTATCATGGAGAAGTTA+TGG + tig0031099:5034-5053 Msa1445390:intron 30.0%
ATTGCACGATAAAATCAAGT+GGG - tig0031099:5142-5161 None:intergenic 30.0%
AATTGCACGATAAAATCAAG+TGG - tig0031099:5143-5162 None:intergenic 30.0%
CTTCAATATATTATGCCTGT+AGG + tig0031099:5210-5229 Msa1445390:intron 30.0%
GGCTTAGTATCAAACAATAT+TGG + tig0031099:5321-5340 Msa1445390:intron 30.0%
! GGAAAAAATCTGAAACAAAC+AGG + tig0031099:5672-5691 Msa1445390:intron 30.0%
AATACACACTTAAGTCATTG+GGG + tig0031099:5875-5894 Msa1445390:intron 30.0%
AACATTAAGAGTCCTATAAG+TGG - tig0031099:6237-6256 None:intergenic 30.0%
! GTTTTTAATCACTTGGGATT+TGG + tig0031099:6283-6302 Msa1445390:intron 30.0%
CACATAAAACATACAGAGTA+AGG - tig0031099:7031-7050 None:intergenic 30.0%
! CTTACTCTGTATGTTTTATG+TGG + tig0031099:7029-7048 Msa1445390:three_prime_UTR 30.0%
! ATGTTTTATGTGGAGCTTTT+TGG + tig0031099:7039-7058 Msa1445390:three_prime_UTR 30.0%
! TGTTTTATGTGGAGCTTTTT+GGG + tig0031099:7040-7059 Msa1445390:three_prime_UTR 30.0%
TTAATGCTTCTTATGTACCT+GGG + tig0031099:7102-7121 Msa1445390:three_prime_UTR 30.0%
!!! ACAGCGAAACTGTTTTTGTT+AGG - tig0031099:2327-2346 None:intergenic 35.0%
!! CTCCTTCTGTTTGTTGTTTA+TGG - tig0031099:2362-2381 None:intergenic 35.0%
CATAAACAACAAACAGAAGG+AGG + tig0031099:2360-2379 Msa1445390:five_prime_UTR 35.0%
AAGAAGAAGAAGAAGAACGA+GGG + tig0031099:2383-2402 Msa1445390:five_prime_UTR 35.0%
ATCATACAATCAGATTGACG+AGG - tig0031099:2771-2790 None:intergenic 35.0%
TCTGATTGTATGATTGTTGC+TGG + tig0031099:2777-2796 Msa1445390:CDS 35.0%
TGGTACTCTTACCAATAAGA+TGG + tig0031099:2797-2816 Msa1445390:CDS 35.0%
! GTTTCTTTTCCCTCTTTTCT+AGG + tig0031099:2840-2859 Msa1445390:intron 35.0%
!! TAAGTTTTGTGCGACTGTTT+AGG + tig0031099:3125-3144 Msa1445390:intron 35.0%
GTAAAACTAATTGGGATACG+AGG - tig0031099:3456-3475 None:intergenic 35.0%
! CTTCTAGAAGTTTAGTAAGG+CGG - tig0031099:3703-3722 None:intergenic 35.0%
! AGGCTTCTAGAAGTTTAGTA+AGG - tig0031099:3706-3725 None:intergenic 35.0%
!!! TGTGTATTTTGGGGCTTTTT+GGG - tig0031099:3739-3758 None:intergenic 35.0%
!!! TTGTGTATTTTGGGGCTTTT+TGG - tig0031099:3740-3759 None:intergenic 35.0%
!!! AGGGGTATTTGTGTATTTTG+GGG - tig0031099:3748-3767 None:intergenic 35.0%
!!! CAGGGGTATTTGTGTATTTT+GGG - tig0031099:3749-3768 None:intergenic 35.0%
!!! ACAGGGGTATTTGTGTATTT+TGG - tig0031099:3750-3769 None:intergenic 35.0%
!! GATTCTAGGATTCTATGGTT+TGG - tig0031099:3862-3881 None:intergenic 35.0%
AAAGTACGGTAAAGGATTCT+AGG - tig0031099:3876-3895 None:intergenic 35.0%
! CTTGCAAAAAAGTACGGTAA+AGG - tig0031099:3884-3903 None:intergenic 35.0%
!! TTCTGTTTGGTGCTTATCTT+TGG - tig0031099:3980-3999 None:intergenic 35.0%
CTTCCTAGTTTAAGTCATAG+GGG + tig0031099:4038-4057 Msa1445390:intron 35.0%
ATCATCTCACGTTTAATGTG+AGG + tig0031099:4171-4190 Msa1445390:intron 35.0%
TCATCTCACGTTTAATGTGA+GGG + tig0031099:4172-4191 Msa1445390:intron 35.0%
! AAGTTACAGAGCCTTATATG+TGG - tig0031099:4436-4455 None:intergenic 35.0%
TAAAATCAAGTGGGCAATCA+AGG - tig0031099:5133-5152 None:intergenic 35.0%
! TGCTTCTGGAAGAATCAATT+TGG - tig0031099:5713-5732 None:intergenic 35.0%
! AAATTGATTCTTCCAGAAGC+AGG + tig0031099:5712-5731 Msa1445390:intron 35.0%
! GGAAAAGAGAATGAGTTTTG+GGG - tig0031099:5785-5804 None:intergenic 35.0%
! GGGAAAAGAGAATGAGTTTT+GGG - tig0031099:5786-5805 None:intergenic 35.0%
AAGGGAATTAGAAGCTCATA+CGG - tig0031099:5834-5853 None:intergenic 35.0%
ATTTGAATGTCACTGCATGT+CGG + tig0031099:5956-5975 Msa1445390:intron 35.0%
!! TCTCTACGAAAGTGTTCAAT+TGG + tig0031099:6048-6067 Msa1445390:intron 35.0%
!! CTCTACGAAAGTGTTCAATT+GGG + tig0031099:6049-6068 Msa1445390:intron 35.0%
ATTGATAGATAAAGATGGGC+AGG - tig0031099:6191-6210 None:intergenic 35.0%
CAGATTACTGTTCCACTTAT+AGG + tig0031099:6222-6241 Msa1445390:intron 35.0%
! TGTATGTTTAGCTGGCTTAA+TGG - tig0031099:6629-6648 None:intergenic 35.0%
TTGAGAACTGTATGTTTAGC+TGG - tig0031099:6637-6656 None:intergenic 35.0%
AATGCTGACAAATCATTGCA+GGG + tig0031099:6660-6679 Msa1445390:intron 35.0%
CCTGTTGATATTTATGTTCC+CGG + tig0031099:6796-6815 Msa1445390:CDS 35.0%
TATTGATCTTCTTCTGCAGT+TGG - tig0031099:6861-6880 None:intergenic 35.0%
AACTGCAGAAGAAGATCAAT+AGG + tig0031099:6860-6879 Msa1445390:CDS 35.0%
GGTCGATTAAGTTTATCTCT+TGG + tig0031099:6916-6935 Msa1445390:three_prime_UTR 35.0%
CAGAATATCCACCAAACAAA+GGG - tig0031099:6997-7016 None:intergenic 35.0%
ACAGAATATCCACCAAACAA+AGG - tig0031099:6998-7017 None:intergenic 35.0%
! GTTTTATGTGGAGCTTTTTG+GGG + tig0031099:7041-7060 Msa1445390:three_prime_UTR 35.0%
! TTTTATGTGGAGCTTTTTGG+GGG + tig0031099:7042-7061 Msa1445390:three_prime_UTR 35.0%
!! TTTTGGGGGCTTAAAATCTT+TGG + tig0031099:7056-7075 Msa1445390:three_prime_UTR 35.0%
GTTAATGCTTCTTATGTACC+TGG + tig0031099:7101-7120 Msa1445390:three_prime_UTR 35.0%
! TTAATCTGGAGTAAGAGAGA+TGG - tig0031099:7185-7204 None:intergenic 35.0%
GAAGAAGAAGAAGAAGAACG+AGG + tig0031099:2382-2401 Msa1445390:five_prime_UTR 40.0%
AGAAGAAGAAGAAGAACGAG+GGG + tig0031099:2384-2403 Msa1445390:five_prime_UTR 40.0%
TCAATCTGGCCTATGACTTT+CGG + tig0031099:2660-2679 Msa1445390:CDS 40.0%
CATCATTTCAACAGCACAAC+AGG - tig0031099:2691-2710 None:intergenic 40.0%
GCTGTTGAAATGATGCATAC+TGG + tig0031099:2696-2715 Msa1445390:CDS 40.0%
AGAAACATACTTGCGAAGAG+CGG - tig0031099:2826-2845 None:intergenic 40.0%
CTCTTGATTTAGGCTCTGTT+TGG + tig0031099:3044-3063 Msa1445390:intron 40.0%
AGTCGCACAAAACTTATGAC+AGG - tig0031099:3121-3140 None:intergenic 40.0%
TTGCATAAGCTATCCTGAAG+AGG + tig0031099:3376-3395 Msa1445390:intron 40.0%
CTTATTTCCACAACCTCTTC+AGG - tig0031099:3392-3411 None:intergenic 40.0%
CTTATGGACATGTCATGAGT+TGG + tig0031099:3422-3441 Msa1445390:intron 40.0%
!! TAGAAACCTTTTGGAGGTCT+TGG - tig0031099:3631-3650 None:intergenic 40.0%
! GTGTACTAGAAACCTTTTGG+AGG - tig0031099:3637-3656 None:intergenic 40.0%
! GAGGTGTACTAGAAACCTTT+TGG - tig0031099:3640-3659 None:intergenic 40.0%
TGGTATTTATAGCCCGCTAT+GGG - tig0031099:3803-3822 None:intergenic 40.0%
! CTATGGTTTGGACTGATGAT+TGG - tig0031099:3850-3869 None:intergenic 40.0%
ACAGTATATTCTGCGACACT+AGG + tig0031099:3919-3938 Msa1445390:intron 40.0%
ATTCTGCGACACTAGGAAAA+AGG + tig0031099:3926-3945 Msa1445390:intron 40.0%
CAACCCCTATGACTTAAACT+AGG - tig0031099:4044-4063 None:intergenic 40.0%
CTAGTTTAAGTCATAGGGGT+TGG + tig0031099:4042-4061 Msa1445390:intron 40.0%
TTGTCACTGCATGTTAGAAG+AGG + tig0031099:4131-4150 Msa1445390:intron 40.0%
CATCTCACGTTTAATGTGAG+GGG + tig0031099:4173-4192 Msa1445390:intron 40.0%
! TCGGGTTATTTGAGTTTAGC+TGG - tig0031099:5099-5118 None:intergenic 40.0%
TCAAATAACCCGATCCAAAC+AGG + tig0031099:5106-5125 Msa1445390:intron 40.0%
AATCAAGGACCTGTTTGGAT+CGG - tig0031099:5118-5137 None:intergenic 40.0%
CTGTAGGAGACTAATAGCTA+GGG + tig0031099:5226-5245 Msa1445390:intron 40.0%
CAGCTGCAGAAGAATCAATT+TGG - tig0031099:5293-5312 None:intergenic 40.0%
!!! TCTTCTGCAGCTGTTGATTT+TGG + tig0031099:5300-5319 Msa1445390:intron 40.0%
ATTGCAATAACCTGCACACT+TGG - tig0031099:5751-5770 None:intergenic 40.0%
! GGGGAAAAGAGAATGAGTTT+TGG - tig0031099:5787-5806 None:intergenic 40.0%
AGGGAATTAGAAGCTCATAC+GGG - tig0031099:5833-5852 None:intergenic 40.0%
AGCTTCTAATTCCCTTCTAC+AGG + tig0031099:5838-5857 Msa1445390:intron 40.0%
AAGATGGGCAGGATAAAGTT+TGG - tig0031099:6180-6199 None:intergenic 40.0%
!! GACGGAATGATGGATAAACA+AGG - tig0031099:6576-6595 None:intergenic 40.0%
GAATGCTGACAAATCATTGC+AGG + tig0031099:6659-6678 Msa1445390:intron 40.0%
CCGGGAACATAAATATCAAC+AGG - tig0031099:6799-6818 None:intergenic 40.0%
ACAAAGGGTGATTCATAGCA+AGG - tig0031099:6982-7001 None:intergenic 40.0%
GCTATGAATCACCCTTTGTT+TGG + tig0031099:6983-7002 Msa1445390:three_prime_UTR 40.0%
! ATGAATCACCCTTTGTTTGG+TGG + tig0031099:6986-7005 Msa1445390:three_prime_UTR 40.0%
!! TGAGTGGTTTGTTTAATCCC+AGG - tig0031099:7122-7141 None:intergenic 40.0%
ACGTATGAGTCAAACATGAG+TGG - tig0031099:7138-7157 None:intergenic 40.0%
!!! ACTGTTTTTGTTAGGCGACG+TGG - tig0031099:2319-2338 None:intergenic 45.0%
AAGAAGAACGAGGGGAAGAA+CGG + tig0031099:2392-2411 Msa1445390:five_prime_UTR 45.0%
AGAGAGATGGAAGGGTTGTA+TGG - tig0031099:2512-2531 None:intergenic 45.0%
!! GGTTGATGAGAGAGATGGAA+GGG - tig0031099:2520-2539 None:intergenic 45.0%
!! TGGTTGATGAGAGAGATGGA+AGG - tig0031099:2521-2540 None:intergenic 45.0%
TCCCGTTGGAATATCGAAGA+CGG + tig0031099:2584-2603 Msa1445390:CDS 45.0%
CGTTACGATCTGGATCGATT+TGG + tig0031099:2726-2745 Msa1445390:CDS 45.0%
CAATCAGATTGACGAGGACT+AGG - tig0031099:2765-2784 None:intergenic 45.0%
GAAACATACTTGCGAAGAGC+GGG - tig0031099:2825-2844 None:intergenic 45.0%
! GTTTTGTGCGACTGTTTAGG+AGG + tig0031099:3128-3147 Msa1445390:intron 45.0%
AAGCTATCCTGAAGAGGTTG+TGG + tig0031099:3382-3401 Msa1445390:intron 45.0%
! TGGAGGGCTTATACGCTTTT+AGG - tig0031099:3600-3619 None:intergenic 45.0%
!! GTTTCTAGTACACCTCCAGA+GGG + tig0031099:3644-3663 Msa1445390:intron 45.0%
!!! GTATTTTGGGGCTTTTTGGG+CGG - tig0031099:3736-3755 None:intergenic 45.0%
ACACAAATACCCCTGTTGCT+TGG + tig0031099:3754-3773 Msa1445390:intron 45.0%
TGCTTGGTTTCCAAGCAACA+GGG - tig0031099:3767-3786 None:intergenic 45.0%
TTGCTTGGTTTCCAAGCAAC+AGG - tig0031099:3768-3787 None:intergenic 45.0%
GTGGTATTTATAGCCCGCTA+TGG - tig0031099:3804-3823 None:intergenic 45.0%
AGCACGTAGAGAAGACTATC+TGG - tig0031099:4071-4090 None:intergenic 45.0%
GATAGTCTTCTCTACGTGCT+CGG + tig0031099:4071-4090 Msa1445390:intron 45.0%
TGTTAGAAGAGGTTCGTACG+TGG + tig0031099:4142-4161 Msa1445390:intron 45.0%
GGATTGCTGCTCCACATATA+AGG + tig0031099:4422-4441 Msa1445390:intron 45.0%
ATCAAGGACCTGTTTGGATC+GGG - tig0031099:5117-5136 None:intergenic 45.0%
! CCTAGCTATTAGTCTCCTAC+AGG - tig0031099:5228-5247 None:intergenic 45.0%
CCTGTAGGAGACTAATAGCT+AGG + tig0031099:5225-5244 Msa1445390:intron 45.0%
AGGTAAATGGAACCTGCTTC+TGG - tig0031099:5727-5746 None:intergenic 45.0%
GAATTAGAAGCTCATACGGG+CGG - tig0031099:5830-5849 None:intergenic 45.0%
GGGAAGAAAGACCTGTAGAA+GGG - tig0031099:5852-5871 None:intergenic 45.0%
TGGGAAGAAAGACCTGTAGA+AGG - tig0031099:5853-5872 None:intergenic 45.0%
CACACTTAAGTCATTGGGGT+TGG + tig0031099:5879-5898 Msa1445390:intron 45.0%
TGTCTCACACCTGAATGTGA+AGG + tig0031099:6004-6023 Msa1445390:intron 45.0%
GTCTCACACCTGAATGTGAA+GGG + tig0031099:6005-6024 Msa1445390:intron 45.0%
ACTTCACACCCTTCACATTC+AGG - tig0031099:6016-6035 None:intergenic 45.0%
!! AAGGCCCTTAAAGAGTGTTC+CGG - tig0031099:6357-6376 None:intergenic 45.0%
TCCATGGGAAGTTGTGCTAA+TGG + tig0031099:6718-6737 Msa1445390:CDS 45.0%
TCCATTAGCACAACTTCCCA+TGG - tig0031099:6722-6741 None:intergenic 45.0%
ATGGGAAGTTGTGCTAATGG+AGG + tig0031099:6721-6740 Msa1445390:CDS 45.0%
GGACAACAGAGTAAGAGTAG+TGG - tig0031099:6756-6775 None:intergenic 45.0%
TACTCTTACTCTGTTGTCCG+AGG + tig0031099:6757-6776 Msa1445390:CDS 45.0%
TACAGTAAAGCCTCAGCAGT+TGG - tig0031099:6829-6848 None:intergenic 45.0%
ACTGCTGAGGCTTTACTGTA+TGG + tig0031099:6829-6848 Msa1445390:CDS 45.0%
TGATCTTCTTCTGCAGTTGG+AGG - tig0031099:6858-6877 None:intergenic 45.0%
GAAGAAGATCAATAGGCGCA+AGG + tig0031099:6867-6886 Msa1445390:CDS 45.0%
!! AAAGAATAATTTATAAATTT+GGG + tig0031099:6443-6462 Msa1445390:intron 5.0%
ATCAACGCAACGAACCACCA+TGG + tig0031099:2419-2438 Msa1445390:exon 50.0%
AGTTAGAAATGCCGCCATGG+TGG - tig0031099:2436-2455 None:intergenic 50.0%
TCGAGTTAGAAATGCCGCCA+TGG - tig0031099:2439-2458 None:intergenic 50.0%
!! GGTGTGGTTGATGAGAGAGA+TGG - tig0031099:2525-2544 None:intergenic 50.0%
CTTCGATATTCCAACGGGAG+AGG - tig0031099:2583-2602 None:intergenic 50.0%
GCCGTCTTCGATATTCCAAC+GGG - tig0031099:2588-2607 None:intergenic 50.0%
CGCCGTCTTCGATATTCCAA+CGG - tig0031099:2589-2608 None:intergenic 50.0%
CGTTGGAATATCGAAGACGG+CGG + tig0031099:2587-2606 Msa1445390:CDS 50.0%
CTCATGAATTGGGCTCGTAC+TGG + tig0031099:2636-2655 Msa1445390:CDS 50.0%
AAGAGCGGGAGCCATCTTAT+TGG - tig0031099:2811-2830 None:intergenic 50.0%
CGACTGTTTAGGAGGACTTG+TGG + tig0031099:3136-3155 Msa1445390:intron 50.0%
AGCGTATAAGCCCTCCAGAA+AGG + tig0031099:3603-3622 Msa1445390:intron 50.0%
AAGGCTCCAAGACCTCCAAA+AGG + tig0031099:3622-3641 Msa1445390:intron 50.0%
!! GGTTTCTAGTACACCTCCAG+AGG + tig0031099:3643-3662 Msa1445390:intron 50.0%
TAGTAAGGCGGCACCTCAAA+GGG - tig0031099:3691-3710 None:intergenic 50.0%
TTAGTAAGGCGGCACCTCAA+AGG - tig0031099:3692-3711 None:intergenic 50.0%
!! GCTTTTTGGGCGGTTTCTAG+AGG - tig0031099:3726-3745 None:intergenic 50.0%
GCTTGGTTTCCAAGCAACAG+GGG - tig0031099:3766-3785 None:intergenic 50.0%
TTATAGCCCGCTATGGGCTT+GGG - tig0031099:3797-3816 None:intergenic 50.0%
TTTATAGCCCGCTATGGGCT+TGG - tig0031099:3798-3817 None:intergenic 50.0%
!! CTTGAGAGTGCTCTCAAGAG+TGG - tig0031099:3823-3842 None:intergenic 50.0%
!! CACTCTTGAGAGCACTCTCA+AGG + tig0031099:3821-3840 Msa1445390:intron 50.0%
TACGTGCTCGGATGTTGTTC+TGG + tig0031099:4083-4102 Msa1445390:intron 50.0%
TGGGCAATCAAGGACCTGTT+TGG - tig0031099:5123-5142 None:intergenic 50.0%
CTGCACACTTGGCAGGTAAA+TGG - tig0031099:5740-5759 None:intergenic 50.0%
CATTTACCTGCCAAGTGTGC+AGG + tig0031099:5738-5757 Msa1445390:intron 50.0%
CAATAACCTGCACACTTGGC+AGG - tig0031099:5747-5766 None:intergenic 50.0%
TGAATGTCACTGCATGTCGG+AGG + tig0031099:5959-5978 Msa1445390:intron 50.0%
TGTCGGAGGAGGTTCATATG+TGG + tig0031099:5973-5992 Msa1445390:intron 50.0%
AATCACTTGGGATTTGGGCG+TGG + tig0031099:6289-6308 Msa1445390:intron 50.0%
!! AGGCCCTTAAAGAGTGTTCC+GGG - tig0031099:6356-6375 None:intergenic 50.0%
!! CCTAGATGGGTTGTCTCCAT+GGG + tig0031099:6703-6722 Msa1445390:CDS 50.0%
GGAAGTTGTGCTAATGGAGG+AGG + tig0031099:6724-6743 Msa1445390:CDS 50.0%
GAACGATCCTGTCACATCCT+CGG - tig0031099:6777-6796 None:intergenic 50.0%
GTAAAGCCTCAGCAGTTGGA+GGG - tig0031099:6825-6844 None:intergenic 50.0%
AGTAAAGCCTCAGCAGTTGG+AGG - tig0031099:6826-6845 None:intergenic 50.0%
AACGCAACGAACCACCATGG+CGG + tig0031099:2422-2441 Msa1445390:exon 55.0%
! TGGAGAGACGCTAAGCGTTG+TGG - tig0031099:2492-2511 None:intergenic 55.0%
CGATATTCCAACGGGAGAGG+TGG - tig0031099:2580-2599 None:intergenic 55.0%
CAGGCGAGTCCGAAAGTCAT+AGG - tig0031099:2672-2691 None:intergenic 55.0%
!! TGGTGCTGCTCGTTACGATC+TGG + tig0031099:2716-2735 Msa1445390:CDS 55.0%
GGTCTTGGAGCCTTTCTGGA+GGG - tig0031099:3616-3635 None:intergenic 55.0%
AGGTCTTGGAGCCTTTCTGG+AGG - tig0031099:3617-3636 None:intergenic 55.0%
TGGAGGTCTTGGAGCCTTTC+TGG - tig0031099:3620-3639 None:intergenic 55.0%
GGGCTTATGAATCCCTCTGG+AGG - tig0031099:3659-3678 None:intergenic 55.0%
CCAGGGCTTATGAATCCCTC+TGG - tig0031099:3662-3681 None:intergenic 55.0%
CCAGAGGGATTCATAAGCCC+TGG + tig0031099:3659-3678 Msa1445390:intron 55.0%
ACCAAAGCCCAAGCCCATAG+CGG + tig0031099:3787-3806 Msa1445390:intron 55.0%
ATGTCACTGCATGTCGGAGG+AGG + tig0031099:5962-5981 Msa1445390:intron 55.0%
GAAATGCTAACACGTGCCCC+CGG + tig0031099:6335-6354 Msa1445390:intron 55.0%
TGCCCCCGGAACACTCTTTA+AGG + tig0031099:6349-6368 Msa1445390:intron 55.0%
GCCCCCGGAACACTCTTTAA+GGG + tig0031099:6350-6369 Msa1445390:intron 55.0%
!! GCCCTTAAAGAGTGTTCCGG+GGG - tig0031099:6354-6373 None:intergenic 55.0%
!! GGCCCTTAAAGAGTGTTCCG+GGG - tig0031099:6355-6374 None:intergenic 55.0%
!! GGATCCTTAAAGAGTGCCCC+CGG + tig0031099:6464-6483 Msa1445390:intron 55.0%
!! GATCCTTAAAGAGTGCCCCC+GGG + tig0031099:6465-6484 Msa1445390:intron 55.0%
!! ATCCTTAAAGAGTGCCCCCG+GGG + tig0031099:6466-6485 Msa1445390:intron 55.0%
AGTCTTGCTAACGAGTGCCC+CGG - tig0031099:6486-6505 None:intergenic 55.0%
ACCAAATGCCCGAGCCTAGA+TGG + tig0031099:6689-6708 Msa1445390:CDS 55.0%
CCAAATGCCCGAGCCTAGAT+GGG + tig0031099:6690-6709 Msa1445390:CDS 55.0%
GAGACAACCCATCTAGGCTC+GGG - tig0031099:6700-6719 None:intergenic 55.0%
GGAGACAACCCATCTAGGCT+CGG - tig0031099:6701-6720 None:intergenic 55.0%
!! GCCTAGATGGGTTGTCTCCA+TGG + tig0031099:6702-6721 Msa1445390:CDS 55.0%
CCCATGGAGACAACCCATCT+AGG - tig0031099:6706-6725 None:intergenic 55.0%
CTGTTGTCCGAGGATGTGAC+AGG + tig0031099:6767-6786 Msa1445390:CDS 55.0%
GCAAGGACTTCCTCCATTGG+TGG + tig0031099:6884-6903 Msa1445390:CDS 55.0%
CTCACTGAGTCCACCAATGG+AGG - tig0031099:6897-6916 None:intergenic 55.0%
!! CTCCATTGGTGGACTCAGTG+AGG + tig0031099:6895-6914 Msa1445390:CDS 55.0%
GACCTCACTGAGTCCACCAA+TGG - tig0031099:6900-6919 None:intergenic 55.0%
GGCGGAGTACGTGATCTCGA+AGG + tig0031099:2605-2624 Msa1445390:CDS 60.0%
!! GGGCTCGTACTGGCTCAATC+TGG + tig0031099:2646-2665 Msa1445390:CDS 60.0%
! GGGCTTGGGCTTTGGTTGCT+TGG - tig0031099:3783-3802 None:intergenic 60.0%
CCAAAGCCCAAGCCCATAGC+GGG + tig0031099:3788-3807 Msa1445390:intron 60.0%
TCTTGCTAACGAGTGCCCCG+GGG - tig0031099:6484-6503 None:intergenic 60.0%
GTCTTGCTAACGAGTGCCCC+GGG - tig0031099:6485-6504 None:intergenic 60.0%
CCCATCTAGGCTCGGGCATT+TGG - tig0031099:6693-6712 None:intergenic 60.0%
GGCGCAAGGACTTCCTCCAT+TGG + tig0031099:6881-6900 Msa1445390:CDS 60.0%
TGGAGCGTAAGGGGTGGGTG+TGG - tig0031099:2541-2560 None:intergenic 65.0%
AGGAGGCGGTGGAGCGTAAG+GGG - tig0031099:2550-2569 None:intergenic 65.0%
GAGGAGGCGGTGGAGCGTAA+GGG - tig0031099:2551-2570 None:intergenic 65.0%
GAGGTGGTCGATGGAGGAGG+CGG - tig0031099:2564-2583 None:intergenic 65.0%
GGAGAGGTGGTCGATGGAGG+AGG - tig0031099:2567-2586 None:intergenic 65.0%
ACGGGAGAGGTGGTCGATGG+AGG - tig0031099:2570-2589 None:intergenic 65.0%
CCAACGGGAGAGGTGGTCGA+TGG - tig0031099:2573-2592 None:intergenic 65.0%
CCATCGACCACCTCTCCCGT+TGG + tig0031099:2570-2589 Msa1445390:CDS 65.0%
! ACCTCAAAGGGAGCGCGCCA+GGG - tig0031099:3679-3698 None:intergenic 65.0%
CCCGCTATGGGCTTGGGCTT+TGG - tig0031099:3791-3810 None:intergenic 65.0%
!! TGCCCCGGGGGCACTCTTTA+AGG - tig0031099:6471-6490 None:intergenic 65.0%
CTTGCTAACGAGTGCCCCGG+GGG - tig0031099:6483-6502 None:intergenic 65.0%
TCAGCAGTTGGAGGGCAGCC+GGG - tig0031099:6817-6836 None:intergenic 65.0%
CTCAGCAGTTGGAGGGCAGC+CGG - tig0031099:6818-6837 None:intergenic 65.0%
GGCGGTGGAGCGTAAGGGGT+GGG - tig0031099:2546-2565 None:intergenic 70.0%
AGGCGGTGGAGCGTAAGGGG+TGG - tig0031099:2547-2566 None:intergenic 70.0%
GGAGGAGGCGGTGGAGCGTA+AGG - tig0031099:2552-2571 None:intergenic 70.0%
GTGGTCGATGGAGGAGGCGG+TGG - tig0031099:2561-2580 None:intergenic 70.0%
! CACCTCAAAGGGAGCGCGCC+AGG - tig0031099:3680-3699 None:intergenic 70.0%
CGGCTGCCCTCCAACTGCTG+AGG + tig0031099:6816-6835 Msa1445390:CDS 70.0%
GCCCTGGCGCGCTCCCTTTG+AGG + tig0031099:3675-3694 Msa1445390:intron 75.0%
Chromosome Type Strat End Strand Name
tig0031099 gene 2306 7251 2306 ID=Msa1445390;Name=Msa1445390
tig0031099 mRNA 2306 7251 2306 ID=Msa1445390-mRNA-1;Parent=Msa1445390;Name=Msa1445390-mRNA-1;_AED=0.00;_eAED=0.00;_QI=132|1|1|1|1|1|2|336|210
tig0031099 exon 2306 2835 2306 ID=Msa1445390-mRNA-1:exon:14970;Parent=Msa1445390-mRNA-1
tig0031099 exon 6681 7251 6681 ID=Msa1445390-mRNA-1:exon:14971;Parent=Msa1445390-mRNA-1
tig0031099 five_prime_UTR 2306 2437 2306 ID=Msa1445390-mRNA-1:five_prime_utr;Parent=Msa1445390-mRNA-1
tig0031099 CDS 2438 2835 2438 ID=Msa1445390-mRNA-1:cds;Parent=Msa1445390-mRNA-1
tig0031099 CDS 6681 6915 6681 ID=Msa1445390-mRNA-1:cds;Parent=Msa1445390-mRNA-1
tig0031099 three_prime_UTR 6916 7251 6916 ID=Msa1445390-mRNA-1:three_prime_utr;Parent=Msa1445390-mRNA-1
Gene Sequence

>Msa1445390

ATGGCGGCATTTCTAACTCGAACATCTTCACGATTCTCTCAATTATCTTCACCACAACGCTTAGCGTCTCTCCATACAACCCTTCCATCTCTCTCATCAACCACACCCACCCCTTACGCTCCACCGCCTCCTCCATCGACCACCTCTCCCGTTGGAATATCGAAGACGGCGGAGTACGTGATCTCGAAGGTTGATAATCTCATGAATTGGGCTCGTACTGGCTCAATCTGGCCTATGACTTTCGGACTCGCCTGTTGTGCTGTTGAAATGATGCATACTGGTGCTGCTCGTTACGATCTGGATCGATTTGGTATCATTTTTCGACCTAGTCCTCGTCAATCTGATTGTATGATTGTTGCTGGTACTCTTACCAATAAGATGGCTCCCGCTCTTCGCAAGGTGTATGACCAAATGCCCGAGCCTAGATGGGTTGTCTCCATGGGAAGTTGTGCTAATGGAGGAGGATACTACCACTACTCTTACTCTGTTGTCCGAGGATGTGACAGGATCGTTCCTGTTGATATTTATGTTCCCGGCTGCCCTCCAACTGCTGAGGCTTTACTGTATGGACTCCTCCAACTGCAGAAGAAGATCAATAGGCGCAAGGACTTCCTCCATTGGTGGACTCAGTGA

Protein sequence

>Msa1445390

MAAFLTRTSSRFSQLSSPQRLASLHTTLPSLSSTTPTPYAPPPPPSTTSPVGISKTAEYVISKVDNLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLHWWTQ*