AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1449340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1449340 MtrunA17_Chr3g0135651 99.524 210 1 0 1 210 1 210 3.86e-158 435
Msa1449340 MtrunA17_Chr7g0229341 46.753 154 80 2 50 201 7 160 1.69e-51 166
Msa1449340 MtrunA17_CPg0493361 46.753 154 80 2 50 201 7 160 5.34e-51 164
Msa1449340 MtrunA17_Chr4g0016411 46.753 154 80 2 50 201 7 160 5.34e-51 164
Msa1449340 MtrunA17_Chr7g0222091 38.562 153 72 2 50 201 7 138 3.21e-36 126
Msa1449340 MtrunA17_Chr4g0015251 51.948 77 36 1 126 201 2 78 8.04e-25 95.1
Msa1449340 MtrunA17_Chr7g0227431 42.708 96 53 2 50 144 7 101 4.20e-24 92.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1449340 AT5G11770.1 80.275 218 35 3 1 210 1 218 1.25e-122 346
Msa1449340 ATCG00430.1 46.104 154 81 2 50 201 7 160 4.03e-50 162

Find 100 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTTCTGTTTGTTGTTTA+TGG -0.031413 tig0032533:-14307 None:intergenic
TAGTGTAACATTGATTATTT+TGG 0.150032 tig0032533:+19153 Msa1449340:three_prime_UTR
CCTGTTGATATTTATGTTCC+CGG 0.283336 tig0032533:+18745 Msa1449340:CDS
ACCAAATGCCCGAGCCTAGA+TGG 0.309620 tig0032533:+18638 Msa1449340:CDS
CCCATCTAGGCTCGGGCATT+TGG 0.315314 tig0032533:-18639 None:intergenic
ACTTTATAATAAGCAATTCA+TGG 0.367407 tig0032533:+18897 Msa1449340:three_prime_UTR
AGGTTGATAATCTCATGAAT+TGG 0.373372 tig0032533:+14576 Msa1449340:CDS
AGGCGGTGGAGCGTAAGGGG+TGG 0.374478 tig0032533:-14495 None:intergenic
GCTATGAATCACCCTTTGTT+TGG 0.380093 tig0032533:+18932 Msa1449340:three_prime_UTR
AAGAGCGGGAGCCATCTTAT+TGG 0.382683 tig0032533:-14759 None:intergenic
AGAGAGATGGAAGGGTTGTA+TGG 0.387527 tig0032533:-14460 None:intergenic
TTCTGTTTGTTGTTTATGGA+TGG 0.391969 tig0032533:-14303 None:intergenic
GGAGGAGGCGGTGGAGCGTA+AGG 0.398546 tig0032533:-14500 None:intergenic
CTCAGCAGTTGGAGGGCAGC+CGG 0.406470 tig0032533:-18764 None:intergenic
GTGGTCGATGGAGGAGGCGG+TGG 0.407856 tig0032533:-14509 None:intergenic
TCAATCTGGCCTATGACTTT+CGG 0.408619 tig0032533:+14611 Msa1449340:CDS
TCTGATTGTATGATTGTTGC+TGG 0.414093 tig0032533:+14728 Msa1449340:CDS
TCAATGTTACACTATTAATC+TGG 0.418095 tig0032533:-19144 None:intergenic
GAGGTGGTCGATGGAGGAGG+CGG 0.422742 tig0032533:-14512 None:intergenic
CATCATTTCAACAGCACAAC+AGG 0.430335 tig0032533:-14639 None:intergenic
TGATCTTCTTCTGCAGTTGG+AGG 0.439435 tig0032533:-18804 None:intergenic
CACATAAAACATACAGAGTA+AGG 0.442964 tig0032533:-18977 None:intergenic
GGTTGATAATCTCATGAATT+GGG 0.445690 tig0032533:+14577 Msa1449340:CDS
AGGAGGCGGTGGAGCGTAAG+GGG 0.451460 tig0032533:-14498 None:intergenic
GCCTAGATGGGTTGTCTCCA+TGG 0.454702 tig0032533:+18651 Msa1449340:CDS
CGTTACGATCTGGATCGATT+TGG 0.459982 tig0032533:+14677 Msa1449340:CDS
CAGGCGAGTCCGAAAGTCAT+AGG 0.465570 tig0032533:-14620 None:intergenic
ACTGCTGAGGCTTTACTGTA+TGG 0.466993 tig0032533:+18778 Msa1449340:CDS
TATTGATCTTCTTCTGCAGT+TGG 0.469979 tig0032533:-18807 None:intergenic
GGCGGTGGAGCGTAAGGGGT+GGG 0.470168 tig0032533:-14494 None:intergenic
GTTAATGCTTCTTATGTACC+TGG 0.471184 tig0032533:+19049 Msa1449340:three_prime_UTR
GGTCGATTAAGTTTATCTCT+TGG 0.471614 tig0032533:+18865 Msa1449340:three_prime_UTR
TGGTGCTGCTCGTTACGATC+TGG 0.473692 tig0032533:+14667 Msa1449340:CDS
AACTGCAGAAGAAGATCAAT+AGG 0.480409 tig0032533:+18809 Msa1449340:CDS
CTCATGAATTGGGCTCGTAC+TGG 0.482560 tig0032533:+14587 Msa1449340:CDS
TTGCTTATTATAAAGTAGCT+TGG 0.484390 tig0032533:-18890 None:intergenic
CCGGGAACATAAATATCAAC+AGG 0.485170 tig0032533:-18745 None:intergenic
GGAGAGGTGGTCGATGGAGG+AGG 0.486052 tig0032533:-14515 None:intergenic
TCCATGGGAAGTTGTGCTAA+TGG 0.486720 tig0032533:+18667 Msa1449340:CDS
ATGAATCACCCTTTGTTTGG+TGG 0.496345 tig0032533:+18935 Msa1449340:three_prime_UTR
CAATCAGATTGACGAGGACT+AGG 0.496509 tig0032533:-14713 None:intergenic
GCCGTCTTCGATATTCCAAC+GGG 0.500071 tig0032533:-14536 None:intergenic
TGGAGCGTAAGGGGTGGGTG+TGG 0.502797 tig0032533:-14489 None:intergenic
GGGCTCGTACTGGCTCAATC+TGG 0.503571 tig0032533:+14597 Msa1449340:CDS
CCCATGGAGACAACCCATCT+AGG 0.504105 tig0032533:-18652 None:intergenic
GAAACATACTTGCGAAGAGC+GGG 0.507595 tig0032533:-14773 None:intergenic
TCAGCAGTTGGAGGGCAGCC+GGG 0.508884 tig0032533:-18763 None:intergenic
CAGAATATCCACCAAACAAA+GGG 0.511142 tig0032533:-18943 None:intergenic
CTTCGATATTCCAACGGGAG+AGG 0.515451 tig0032533:-14531 None:intergenic
TACAGTAAAGCCTCAGCAGT+TGG 0.522747 tig0032533:-18775 None:intergenic
CCATCGACCACCTCTCCCGT+TGG 0.528192 tig0032533:+14521 Msa1449340:CDS
GAGGAGGCGGTGGAGCGTAA+GGG 0.528912 tig0032533:-14499 None:intergenic
TGAGTGGTTTGTTTAATCCC+AGG 0.531284 tig0032533:-19067 None:intergenic
CCAAATGCCCGAGCCTAGAT+GGG 0.537493 tig0032533:+18639 Msa1449340:CDS
GAGACAACCCATCTAGGCTC+GGG 0.544154 tig0032533:-18646 None:intergenic
CCTAGATGGGTTGTCTCCAT+GGG 0.544839 tig0032533:+18652 Msa1449340:CDS
CGGCTGCCCTCCAACTGCTG+AGG 0.547600 tig0032533:+18765 Msa1449340:CDS
ACGGGAGAGGTGGTCGATGG+AGG 0.553280 tig0032533:-14518 None:intergenic
TCCATTAGCACAACTTCCCA+TGG 0.554029 tig0032533:-18668 None:intergenic
TTAATGCTTCTTATGTACCT+GGG 0.557163 tig0032533:+19050 Msa1449340:three_prime_UTR
AAGAAGAACGAGGGGAAGAA+CGG 0.557431 tig0032533:+14343 Msa1449340:five_prime_UTR
ACAAAGGGTGATTCATAGCA+AGG 0.558007 tig0032533:-18928 None:intergenic
GGAAGTTGTGCTAATGGAGG+AGG 0.559773 tig0032533:+18673 Msa1449340:CDS
CGATATTCCAACGGGAGAGG+TGG 0.560126 tig0032533:-14528 None:intergenic
GGAGACAACCCATCTAGGCT+CGG 0.561380 tig0032533:-18647 None:intergenic
TGGTACTCTTACCAATAAGA+TGG 0.563740 tig0032533:+14748 Msa1449340:CDS
TTAATCTGGAGTAAGAGAGA+TGG 0.563947 tig0032533:-19130 None:intergenic
CGCCGTCTTCGATATTCCAA+CGG 0.565051 tig0032533:-14537 None:intergenic
CTGTTGTCCGAGGATGTGAC+AGG 0.567271 tig0032533:+18716 Msa1449340:CDS
GGCGCAAGGACTTCCTCCAT+TGG 0.568783 tig0032533:+18830 Msa1449340:CDS
AGAAACATACTTGCGAAGAG+CGG 0.569989 tig0032533:-14774 None:intergenic
GAACGATCCTGTCACATCCT+CGG 0.578017 tig0032533:-18723 None:intergenic
ATCCATAAACAACAAACAGA+AGG 0.587191 tig0032533:+14305 Msa1449340:five_prime_UTR
GCAAGGACTTCCTCCATTGG+TGG 0.590384 tig0032533:+18833 Msa1449340:CDS
CTCACTGAGTCCACCAATGG+AGG 0.591840 tig0032533:-18843 None:intergenic
GTAAAGCCTCAGCAGTTGGA+GGG 0.606304 tig0032533:-18771 None:intergenic
ACAGAATATCCACCAAACAA+AGG 0.607833 tig0032533:-18944 None:intergenic
GCTGTTGAAATGATGCATAC+TGG 0.608176 tig0032533:+14647 Msa1449340:CDS
AGTAAAGCCTCAGCAGTTGG+AGG 0.610038 tig0032533:-18772 None:intergenic
CATAAACAACAAACAGAAGG+AGG 0.610565 tig0032533:+14308 Msa1449340:five_prime_UTR
GACCTCACTGAGTCCACCAA+TGG 0.613212 tig0032533:-18846 None:intergenic
TACTCTTACTCTGTTGTCCG+AGG 0.620931 tig0032533:+18706 Msa1449340:CDS
CCAACGGGAGAGGTGGTCGA+TGG 0.621156 tig0032533:-14521 None:intergenic
GGTGTGGTTGATGAGAGAGA+TGG 0.624092 tig0032533:-14473 None:intergenic
TCGAGTTAGAAATGCCGCCA+TGG 0.627508 tig0032533:-14387 None:intergenic
GAAGAAGATCAATAGGCGCA+AGG 0.632047 tig0032533:+18816 Msa1449340:CDS
TCCCGTTGGAATATCGAAGA+CGG 0.641180 tig0032533:+14535 Msa1449340:CDS
CTCCATTGGTGGACTCAGTG+AGG 0.646971 tig0032533:+18844 Msa1449340:CDS
TGGTTGATGAGAGAGATGGA+AGG 0.649649 tig0032533:-14469 None:intergenic
ATGGGAAGTTGTGCTAATGG+AGG 0.660590 tig0032533:+18670 Msa1449340:CDS
GGTTGATGAGAGAGATGGAA+GGG 0.665700 tig0032533:-14468 None:intergenic
ACGTATGAGTCAAACATGAG+TGG 0.672071 tig0032533:-19083 None:intergenic
AGTTAGAAATGCCGCCATGG+TGG 0.674876 tig0032533:-14384 None:intergenic
GGACAACAGAGTAAGAGTAG+TGG 0.675431 tig0032533:-18702 None:intergenic
TGGAGAGACGCTAAGCGTTG+TGG 0.684822 tig0032533:-14440 None:intergenic
ATCAACGCAACGAACCACCA+TGG 0.685246 tig0032533:+14370 Msa1449340:exon
GGCGGAGTACGTGATCTCGA+AGG 0.687555 tig0032533:+14556 Msa1449340:CDS
CGTTGGAATATCGAAGACGG+CGG 0.718228 tig0032533:+14538 Msa1449340:CDS
AACGCAACGAACCACCATGG+CGG 0.727863 tig0032533:+14373 Msa1449340:exon
ATCATACAATCAGATTGACG+AGG 0.742801 tig0032533:-14719 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAATAAATGGATTTTTA+TGG - tig0032533:17406-17425 None:intergenic 10.0%
!!! AACTCATTTTTTAAAATAAA+TGG - tig0032533:17416-17435 None:intergenic 10.0%
!! GAAAGAATAATTTATAAATT+TGG + tig0032533:18391-18410 Msa1449340:intron 10.0%
!! AAAATGACATAAAAGTTATA+TGG + tig0032533:16307-16326 Msa1449340:intron 15.0%
!! TTTATGCTATTAATTACTAT+AGG + tig0032533:16600-16619 Msa1449340:intron 15.0%
!! ACTATCAATATATTATTACT+TGG + tig0032533:16643-16662 Msa1449340:intron 15.0%
!!! TGAAAAAAGTGATTTTTTTA+AGG + tig0032533:17580-17599 Msa1449340:intron 15.0%
!!! GGAAAAAAATAGATTTTTTT+TGG + tig0032533:17601-17620 Msa1449340:intron 15.0%
!! ATATATTGATAGATAAAGAT+GGG - tig0032533:18144-18163 None:intergenic 15.0%
!! TCATAAAAACTTACTATTAA+AGG - tig0032533:18325-18344 None:intergenic 15.0%
!!! TAAGTTTTTATGAAAATTTG+TGG + tig0032533:18332-18351 Msa1449340:intron 15.0%
!! AAGCAAATTAAAATTAAAGA+CGG - tig0032533:18543-18562 None:intergenic 15.0%
!! AGAATGTGAAAATTTAACAA+AGG + tig0032533:14919-14938 Msa1449340:intron 20.0%
!! GAATGTGAAAATTTAACAAA+GGG + tig0032533:14920-14939 Msa1449340:intron 20.0%
!! AATGTGAAAATTTAACAAAG+GGG + tig0032533:14921-14940 Msa1449340:intron 20.0%
!!! AAGTTAAATTGTTTTTGTAC+AGG - tig0032533:15196-15215 None:intergenic 20.0%
!!! TATCTTTAAGTTTTTCTGTT+TGG - tig0032533:15944-15963 None:intergenic 20.0%
!!! TTTTTTTTTTCTGTAACAAC+TGG - tig0032533:16195-16214 None:intergenic 20.0%
!! TCTAACAATATATCATTACT+TGG + tig0032533:16352-16371 Msa1449340:intron 20.0%
!! TTTAGTCTCATAAATAAAGA+GGG - tig0032533:16525-16544 None:intergenic 20.0%
!!! TTTTAGTCTCATAAATAAAG+AGG - tig0032533:16526-16545 None:intergenic 20.0%
!! ATTGACTATTATCTTATCAT+AGG + tig0032533:17135-17154 Msa1449340:intron 20.0%
!! GGAAGATTTCATTAATAAAA+TGG - tig0032533:17223-17242 None:intergenic 20.0%
!!! ATCTATTTTTTTCAACAACA+AGG - tig0032533:17461-17480 None:intergenic 20.0%
!!! ATCTAAAATGAAAAGCTATT+AGG - tig0032533:17500-17519 None:intergenic 20.0%
!!! CAATTTGGTATTTTGATAAT+GGG - tig0032533:17648-17667 None:intergenic 20.0%
!!! TCAATTTGGTATTTTGATAA+TGG - tig0032533:17649-17668 None:intergenic 20.0%
!! AATGTGAAACAATATAAATG+GGG - tig0032533:17756-17775 None:intergenic 20.0%
!! CAATGTGAAACAATATAAAT+GGG - tig0032533:17757-17776 None:intergenic 20.0%
!! AAAAAGGAAAATTAGTATCA+TGG - tig0032533:18080-18099 None:intergenic 20.0%
!!! ATGATACTAATTTTCCTTTT+TGG + tig0032533:18079-18098 Msa1449340:intron 20.0%
!! GATATATTGATAGATAAAGA+TGG - tig0032533:18145-18164 None:intergenic 20.0%
!!! TGAATTTGTTTTTAATCACT+TGG + tig0032533:18225-18244 Msa1449340:intron 20.0%
!!! GAATTTGTTTTTAATCACTT+GGG + tig0032533:18226-18245 Msa1449340:intron 20.0%
!! ATCCCTCTTATATTAAAATT+TGG + tig0032533:18261-18280 Msa1449340:intron 20.0%
!! TCCCTCTTATATTAAAATTT+GGG + tig0032533:18262-18281 Msa1449340:intron 20.0%
!!! TCCCAAATTTTAATATAAGA+GGG - tig0032533:18266-18285 None:intergenic 20.0%
!!! TTCCCAAATTTTAATATAAG+AGG - tig0032533:18267-18286 None:intergenic 20.0%
!! AAATTGTATAGACAGAATAA+TGG - tig0032533:18481-18500 None:intergenic 20.0%
!! ACTTTATAATAAGCAATTCA+TGG + tig0032533:18897-18916 Msa1449340:three_prime_UTR 20.0%
!!! TAGTGTAACATTGATTATTT+TGG + tig0032533:19153-19172 Msa1449340:three_prime_UTR 20.0%
!!! TAACATTGATTATTTTGGAA+TGG + tig0032533:19158-19177 Msa1449340:three_prime_UTR 20.0%
!!! AACATTGATTATTTTGGAAT+GGG + tig0032533:19159-19178 Msa1449340:three_prime_UTR 20.0%
! ACAAATCAATGCTTCTATAA+GGG - tig0032533:14863-14882 None:intergenic 25.0%
! AACAAATCAATGCTTCTATA+AGG - tig0032533:14864-14883 None:intergenic 25.0%
! ATGTGAAAATTTAACAAAGG+GGG + tig0032533:14922-14941 Msa1449340:intron 25.0%
! TTAAATTGCTCTCTTGATTT+AGG + tig0032533:14985-15004 Msa1449340:intron 25.0%
! AATTTAGCGCTTATTGTATA+AGG + tig0032533:15029-15048 Msa1449340:intron 25.0%
! ATTTAGCGCTTATTGTATAA+GGG + tig0032533:15030-15049 Msa1449340:intron 25.0%
!!! ACAACTTTCATTTTAGTTGT+TGG - tig0032533:15307-15326 None:intergenic 25.0%
! AAACACTCGTAAAACTAATT+GGG - tig0032533:15415-15434 None:intergenic 25.0%
! ACGTTCAAATTCAATTGAAA+TGG - tig0032533:16063-16082 None:intergenic 25.0%
! TGTCTACAAAAATGTTCAAT+TGG + tig0032533:16167-16186 Msa1449340:intron 25.0%
! GTCTACAAAAATGTTCAATT+GGG + tig0032533:16168-16187 Msa1449340:intron 25.0%
! ATTCTGCTAGTAATTACTAT+AGG + tig0032533:16245-16264 Msa1449340:intron 25.0%
! AGATAGTTCAAATTCAACAA+AGG + tig0032533:16440-16459 Msa1449340:intron 25.0%
!! AGGGTTTTCAAATTCAAAAA+AGG + tig0032533:16735-16754 Msa1449340:intron 25.0%
!! GTTTTCAAATTCAAAAAAGG+TGG + tig0032533:16738-16757 Msa1449340:intron 25.0%
! AAGACCTAACTAAATTAAGA+GGG - tig0032533:16821-16840 None:intergenic 25.0%
! TAACTTATGAAAACAACTTG+TGG - tig0032533:16971-16990 None:intergenic 25.0%
!!! GTTGTTTTCATAAGTTATCA+TGG + tig0032533:16974-16993 Msa1449340:intron 25.0%
! GCTTAGTATCAAACAATATT+GGG + tig0032533:17273-17292 Msa1449340:intron 25.0%
!!! TCATTTTTGAGTGTTTGTTT+AGG - tig0032533:17563-17582 None:intergenic 25.0%
! GCAATGTGAAACAATATAAA+TGG - tig0032533:17758-17777 None:intergenic 25.0%
! TGACTTAAGTGTGTATTATT+GGG - tig0032533:17822-17841 None:intergenic 25.0%
! ATGACTTAAGTGTGTATTAT+TGG - tig0032533:17823-17842 None:intergenic 25.0%
! ATAATACACACTTAAGTCAT+TGG + tig0032533:17823-17842 Msa1449340:intron 25.0%
! TAATACACACTTAAGTCATT+GGG + tig0032533:17824-17843 Msa1449340:intron 25.0%
!! TACTAATTTTCCTTTTTGGA+AGG + tig0032533:18083-18102 Msa1449340:intron 25.0%
!!! TCATTTTTTTCCTTCCAAAA+AGG - tig0032533:18096-18115 None:intergenic 25.0%
!! TTTTTAATCACTTGGGATTT+GGG + tig0032533:18233-18252 Msa1449340:intron 25.0%
! AATTTGTGGATTTAATGCAT+TGG + tig0032533:18346-18365 Msa1449340:intron 25.0%
! TAAAATTAAAGACGGAATGA+TGG - tig0032533:18535-18554 None:intergenic 25.0%
!!! TTTAATTTGCTTCTTAGACT+TGG + tig0032533:18551-18570 Msa1449340:intron 25.0%
! TTGCTTATTATAAAGTAGCT+TGG - tig0032533:18893-18912 None:intergenic 25.0%
! TCAATGTTACACTATTAATC+TGG - tig0032533:19147-19166 None:intergenic 25.0%
!! TTCTGTTTGTTGTTTATGGA+TGG - tig0032533:14306-14325 None:intergenic 30.0%
ATCCATAAACAACAAACAGA+AGG + tig0032533:14305-14324 Msa1449340:five_prime_UTR 30.0%
!! AGGTTGATAATCTCATGAAT+TGG + tig0032533:14576-14595 Msa1449340:CDS 30.0%
!! GGTTGATAATCTCATGAATT+GGG + tig0032533:14577-14596 Msa1449340:CDS 30.0%
! TTTCTTTTCCCTCTTTTCTA+GGG + tig0032533:14792-14811 Msa1449340:intron 30.0%
TGTAAAAACCCTAGAAAAGA+GGG - tig0032533:14803-14822 None:intergenic 30.0%
ATGTAAAAACCCTAGAAAAG+AGG - tig0032533:14804-14823 None:intergenic 30.0%
TGGATAAACAGTTTATTTGC+AGG - tig0032533:15287-15306 None:intergenic 30.0%
AATAAGCTGAAAACAGCTTA+TGG + tig0032533:15357-15376 Msa1449340:intron 30.0%
CAAACACTCGTAAAACTAAT+TGG - tig0032533:15416-15435 None:intergenic 30.0%
GAGAATTGAGCTTATCTATT+GGG - tig0032533:15445-15464 None:intergenic 30.0%
TGAGAATTGAGCTTATCTAT+TGG - tig0032533:15446-15465 None:intergenic 30.0%
!! CGCTTTTAGGAATATTATGA+CGG - tig0032533:15538-15557 None:intergenic 30.0%
!! TAAAGGATTCTAGGATTCTA+TGG - tig0032533:15818-15837 None:intergenic 30.0%
TGTGTACTTGCAAAAAAGTA+CGG - tig0032533:15841-15860 None:intergenic 30.0%
!! GCTTATCTTTGGTATTTTGA+AGG - tig0032533:15920-15939 None:intergenic 30.0%
TATGACTTAAACTAGGAAGA+AGG - tig0032533:15988-16007 None:intergenic 30.0%
TTCTTCCTAGTTTAAGTCAT+AGG + tig0032533:15987-16006 Msa1449340:intron 30.0%
TCTTCCTAGTTTAAGTCATA+GGG + tig0032533:15988-16007 Msa1449340:intron 30.0%
! AAGTTACAGAGTCTTATATG+TGG - tig0032533:16678-16697 None:intergenic 30.0%
TTCTTTATCTGCAATCATGA+AGG + tig0032533:16715-16734 Msa1449340:intron 30.0%
TCTTTATCTGCAATCATGAA+GGG + tig0032533:16716-16735 Msa1449340:intron 30.0%
AATGCCCTCTTAATTTAGTT+AGG + tig0032533:16814-16833 Msa1449340:intron 30.0%
CAAGACCTAACTAAATTAAG+AGG - tig0032533:16822-16841 None:intergenic 30.0%
AAGTTATCATGGAGAAGTTA+TGG + tig0032533:16985-17004 Msa1449340:intron 30.0%
ATTGCACGATAAAATCAAGT+GGG - tig0032533:17093-17112 None:intergenic 30.0%
AATTGCACGATAAAATCAAG+TGG - tig0032533:17094-17113 None:intergenic 30.0%
CTTCAATATATTATGCCTGT+AGG + tig0032533:17161-17180 Msa1449340:intron 30.0%
GGCTTAGTATCAAACAATAT+TGG + tig0032533:17272-17291 Msa1449340:intron 30.0%
! GGAAAAAATCTGAAACAAAC+AGG + tig0032533:17622-17641 Msa1449340:intron 30.0%
AATACACACTTAAGTCATTG+GGG + tig0032533:17825-17844 Msa1449340:intron 30.0%
AACATTAAGAGTCCTATAAG+TGG - tig0032533:18186-18205 None:intergenic 30.0%
! GTTTTTAATCACTTGGGATT+TGG + tig0032533:18232-18251 Msa1449340:intron 30.0%
CACATAAAACATACAGAGTA+AGG - tig0032533:18980-18999 None:intergenic 30.0%
! CTTACTCTGTATGTTTTATG+TGG + tig0032533:18978-18997 Msa1449340:three_prime_UTR 30.0%
! TATGTTTTATGTGGAGCTTT+TGG + tig0032533:18987-19006 Msa1449340:three_prime_UTR 30.0%
! ATGTTTTATGTGGAGCTTTT+GGG + tig0032533:18988-19007 Msa1449340:three_prime_UTR 30.0%
TTAATGCTTCTTATGTACCT+GGG + tig0032533:19050-19069 Msa1449340:three_prime_UTR 30.0%
!!! ACAGCGAAACTGTTTTTGTT+AGG - tig0032533:14275-14294 None:intergenic 35.0%
!! CTCCTTCTGTTTGTTGTTTA+TGG - tig0032533:14310-14329 None:intergenic 35.0%
CATAAACAACAAACAGAAGG+AGG + tig0032533:14308-14327 Msa1449340:five_prime_UTR 35.0%
AAGAAGAAGAAGAAGAACGA+GGG + tig0032533:14334-14353 Msa1449340:five_prime_UTR 35.0%
ATCATACAATCAGATTGACG+AGG - tig0032533:14722-14741 None:intergenic 35.0%
TCTGATTGTATGATTGTTGC+TGG + tig0032533:14728-14747 Msa1449340:CDS 35.0%
TGGTACTCTTACCAATAAGA+TGG + tig0032533:14748-14767 Msa1449340:CDS 35.0%
! GTTTCTTTTCCCTCTTTTCT+AGG + tig0032533:14791-14810 Msa1449340:intron 35.0%
!! TAAGTTTTGTGCGACTGTTT+AGG + tig0032533:15076-15095 Msa1449340:intron 35.0%
GTAAAACTAATTGGGATACG+AGG - tig0032533:15407-15426 None:intergenic 35.0%
! CTTCTAGAAGTTTAGTAAGG+CGG - tig0032533:15654-15673 None:intergenic 35.0%
! AGGCTTCTAGAAGTTTAGTA+AGG - tig0032533:15657-15676 None:intergenic 35.0%
!!! TGTGTATTTTGGGGCTTTTT+GGG - tig0032533:15690-15709 None:intergenic 35.0%
!!! TTGTGTATTTTGGGGCTTTT+TGG - tig0032533:15691-15710 None:intergenic 35.0%
!!! AGGGGTATTTGTGTATTTTG+GGG - tig0032533:15699-15718 None:intergenic 35.0%
!!! CAGGGGTATTTGTGTATTTT+GGG - tig0032533:15700-15719 None:intergenic 35.0%
!!! ACAGGGGTATTTGTGTATTT+TGG - tig0032533:15701-15720 None:intergenic 35.0%
!! GATTCTAGGATTCTATGGTT+TGG - tig0032533:15813-15832 None:intergenic 35.0%
AAAGTACGGTAAAGGATTCT+AGG - tig0032533:15827-15846 None:intergenic 35.0%
! CTTGCAAAAAAGTACGGTAA+AGG - tig0032533:15835-15854 None:intergenic 35.0%
!! TTCTGTTTGGTGCTTATCTT+TGG - tig0032533:15931-15950 None:intergenic 35.0%
CTTCCTAGTTTAAGTCATAG+GGG + tig0032533:15989-16008 Msa1449340:intron 35.0%
ATCATCTCACGTTTAATGTG+AGG + tig0032533:16122-16141 Msa1449340:intron 35.0%
TCATCTCACGTTTAATGTGA+GGG + tig0032533:16123-16142 Msa1449340:intron 35.0%
! AAGTTACAGAGCCTTATATG+TGG - tig0032533:16387-16406 None:intergenic 35.0%
TAAAATCAAGTGGGCAATCA+AGG - tig0032533:17084-17103 None:intergenic 35.0%
! TGCTTCTGGAAGAATCAATT+TGG - tig0032533:17663-17682 None:intergenic 35.0%
! AAATTGATTCTTCCAGAAGC+AGG + tig0032533:17662-17681 Msa1449340:intron 35.0%
! GGAAAAGAGAATGAGTTTTG+GGG - tig0032533:17735-17754 None:intergenic 35.0%
! GGGAAAAGAGAATGAGTTTT+GGG - tig0032533:17736-17755 None:intergenic 35.0%
AAGGGAATTAGAAGCTCATA+CGG - tig0032533:17784-17803 None:intergenic 35.0%
ATTTGAATGTCACTGCATGT+CGG + tig0032533:17906-17925 Msa1449340:intron 35.0%
!! TCTCTACGAAAGTGTTCAAT+TGG + tig0032533:17998-18017 Msa1449340:intron 35.0%
!! CTCTACGAAAGTGTTCAATT+GGG + tig0032533:17999-18018 Msa1449340:intron 35.0%
ATTGATAGATAAAGATGGGC+AGG - tig0032533:18140-18159 None:intergenic 35.0%
CAGATTACTGTTCCACTTAT+AGG + tig0032533:18171-18190 Msa1449340:intron 35.0%
! TGTATGTTTAGCTGGCTTAA+TGG - tig0032533:18578-18597 None:intergenic 35.0%
TTGAGAACTGTATGTTTAGC+TGG - tig0032533:18586-18605 None:intergenic 35.0%
AATGCTGACAAATCATTGCA+GGG + tig0032533:18609-18628 Msa1449340:intron 35.0%
CCTGTTGATATTTATGTTCC+CGG + tig0032533:18745-18764 Msa1449340:CDS 35.0%
TATTGATCTTCTTCTGCAGT+TGG - tig0032533:18810-18829 None:intergenic 35.0%
AACTGCAGAAGAAGATCAAT+AGG + tig0032533:18809-18828 Msa1449340:CDS 35.0%
GGTCGATTAAGTTTATCTCT+TGG + tig0032533:18865-18884 Msa1449340:three_prime_UTR 35.0%
CAGAATATCCACCAAACAAA+GGG - tig0032533:18946-18965 None:intergenic 35.0%
ACAGAATATCCACCAAACAA+AGG - tig0032533:18947-18966 None:intergenic 35.0%
! TGTTTTATGTGGAGCTTTTG+GGG + tig0032533:18989-19008 Msa1449340:three_prime_UTR 35.0%
!! TTTTGGGGGCTTAAAATCTT+TGG + tig0032533:19004-19023 Msa1449340:three_prime_UTR 35.0%
GTTAATGCTTCTTATGTACC+TGG + tig0032533:19049-19068 Msa1449340:three_prime_UTR 35.0%
! TTAATCTGGAGTAAGAGAGA+TGG - tig0032533:19133-19152 None:intergenic 35.0%
GAAGAAGAAGAAGAAGAACG+AGG + tig0032533:14333-14352 Msa1449340:five_prime_UTR 40.0%
AGAAGAAGAAGAAGAACGAG+GGG + tig0032533:14335-14354 Msa1449340:five_prime_UTR 40.0%
TCAATCTGGCCTATGACTTT+CGG + tig0032533:14611-14630 Msa1449340:CDS 40.0%
CATCATTTCAACAGCACAAC+AGG - tig0032533:14642-14661 None:intergenic 40.0%
GCTGTTGAAATGATGCATAC+TGG + tig0032533:14647-14666 Msa1449340:CDS 40.0%
AGAAACATACTTGCGAAGAG+CGG - tig0032533:14777-14796 None:intergenic 40.0%
CTCTTGATTTAGGCTCTGTT+TGG + tig0032533:14995-15014 Msa1449340:intron 40.0%
AGTCGCACAAAACTTATGAC+AGG - tig0032533:15072-15091 None:intergenic 40.0%
TTGCATAAGCTATCCTGAAG+AGG + tig0032533:15327-15346 Msa1449340:intron 40.0%
CTTATTTCCACAACCTCTTC+AGG - tig0032533:15343-15362 None:intergenic 40.0%
CTTATGGACATGTCATGAGT+TGG + tig0032533:15373-15392 Msa1449340:intron 40.0%
!! TAGAAACCTTTTGGAGGTCT+TGG - tig0032533:15582-15601 None:intergenic 40.0%
! GTGTACTAGAAACCTTTTGG+AGG - tig0032533:15588-15607 None:intergenic 40.0%
! GAGGTGTACTAGAAACCTTT+TGG - tig0032533:15591-15610 None:intergenic 40.0%
TGGTATTTATAGCCCGCTAT+GGG - tig0032533:15754-15773 None:intergenic 40.0%
! CTATGGTTTGGACTGATGAT+TGG - tig0032533:15801-15820 None:intergenic 40.0%
ACAGTATATTCTGCGACACT+AGG + tig0032533:15870-15889 Msa1449340:intron 40.0%
ATTCTGCGACACTAGGAAAA+AGG + tig0032533:15877-15896 Msa1449340:intron 40.0%
CAACCCCTATGACTTAAACT+AGG - tig0032533:15995-16014 None:intergenic 40.0%
CTAGTTTAAGTCATAGGGGT+TGG + tig0032533:15993-16012 Msa1449340:intron 40.0%
TTGTCACTGCATGTTAGAAG+AGG + tig0032533:16082-16101 Msa1449340:intron 40.0%
CATCTCACGTTTAATGTGAG+GGG + tig0032533:16124-16143 Msa1449340:intron 40.0%
! TCGGGTTATTTGAGTTTAGC+TGG - tig0032533:17050-17069 None:intergenic 40.0%
TCAAATAACCCGATCCAAAC+AGG + tig0032533:17057-17076 Msa1449340:intron 40.0%
AATCAAGGACCTGTTTGGAT+CGG - tig0032533:17069-17088 None:intergenic 40.0%
CTGTAGGAGACTAATAGCTA+GGG + tig0032533:17177-17196 Msa1449340:intron 40.0%
CAGCTGCAGAAGAATCAATT+TGG - tig0032533:17244-17263 None:intergenic 40.0%
!!! TCTTCTGCAGCTGTTGATTT+TGG + tig0032533:17251-17270 Msa1449340:intron 40.0%
ATTGCAATAACCTGCACACT+TGG - tig0032533:17701-17720 None:intergenic 40.0%
! GGGGAAAAGAGAATGAGTTT+TGG - tig0032533:17737-17756 None:intergenic 40.0%
AGGGAATTAGAAGCTCATAC+GGG - tig0032533:17783-17802 None:intergenic 40.0%
AGCTTCTAATTCCCTTCTAC+AGG + tig0032533:17788-17807 Msa1449340:intron 40.0%
AAGATGGGCAGGATAAAGTT+TGG - tig0032533:18129-18148 None:intergenic 40.0%
!! GACGGAATGATGGATAAACA+AGG - tig0032533:18525-18544 None:intergenic 40.0%
GAATGCTGACAAATCATTGC+AGG + tig0032533:18608-18627 Msa1449340:intron 40.0%
CCGGGAACATAAATATCAAC+AGG - tig0032533:18748-18767 None:intergenic 40.0%
ACAAAGGGTGATTCATAGCA+AGG - tig0032533:18931-18950 None:intergenic 40.0%
GCTATGAATCACCCTTTGTT+TGG + tig0032533:18932-18951 Msa1449340:three_prime_UTR 40.0%
! ATGAATCACCCTTTGTTTGG+TGG + tig0032533:18935-18954 Msa1449340:three_prime_UTR 40.0%
! GTTTTATGTGGAGCTTTTGG+GGG + tig0032533:18990-19009 Msa1449340:three_prime_UTR 40.0%
!! TGAGTGGTTTGTTTAATCCC+AGG - tig0032533:19070-19089 None:intergenic 40.0%
ACGTATGAGTCAAACATGAG+TGG - tig0032533:19086-19105 None:intergenic 40.0%
!!! ACTGTTTTTGTTAGGCGACG+TGG - tig0032533:14267-14286 None:intergenic 45.0%
AAGAAGAACGAGGGGAAGAA+CGG + tig0032533:14343-14362 Msa1449340:five_prime_UTR 45.0%
AGAGAGATGGAAGGGTTGTA+TGG - tig0032533:14463-14482 None:intergenic 45.0%
!! GGTTGATGAGAGAGATGGAA+GGG - tig0032533:14471-14490 None:intergenic 45.0%
!! TGGTTGATGAGAGAGATGGA+AGG - tig0032533:14472-14491 None:intergenic 45.0%
TCCCGTTGGAATATCGAAGA+CGG + tig0032533:14535-14554 Msa1449340:CDS 45.0%
CGTTACGATCTGGATCGATT+TGG + tig0032533:14677-14696 Msa1449340:CDS 45.0%
CAATCAGATTGACGAGGACT+AGG - tig0032533:14716-14735 None:intergenic 45.0%
GAAACATACTTGCGAAGAGC+GGG - tig0032533:14776-14795 None:intergenic 45.0%
! GTTTTGTGCGACTGTTTAGG+AGG + tig0032533:15079-15098 Msa1449340:intron 45.0%
AAGCTATCCTGAAGAGGTTG+TGG + tig0032533:15333-15352 Msa1449340:intron 45.0%
! TGGAGGGCTTATACGCTTTT+AGG - tig0032533:15551-15570 None:intergenic 45.0%
!! GTTTCTAGTACACCTCCAGA+GGG + tig0032533:15595-15614 Msa1449340:intron 45.0%
!!! GTATTTTGGGGCTTTTTGGG+CGG - tig0032533:15687-15706 None:intergenic 45.0%
ACACAAATACCCCTGTTGCT+TGG + tig0032533:15705-15724 Msa1449340:intron 45.0%
TGCTTGGTTTCCAAGCAACA+GGG - tig0032533:15718-15737 None:intergenic 45.0%
TTGCTTGGTTTCCAAGCAAC+AGG - tig0032533:15719-15738 None:intergenic 45.0%
GTGGTATTTATAGCCCGCTA+TGG - tig0032533:15755-15774 None:intergenic 45.0%
AGCACGTAGAGAAGACTATC+TGG - tig0032533:16022-16041 None:intergenic 45.0%
GATAGTCTTCTCTACGTGCT+CGG + tig0032533:16022-16041 Msa1449340:intron 45.0%
TGTTAGAAGAGGTTCGTACG+TGG + tig0032533:16093-16112 Msa1449340:intron 45.0%
GGATTGCTGCTCCACATATA+AGG + tig0032533:16373-16392 Msa1449340:intron 45.0%
ATCAAGGACCTGTTTGGATC+GGG - tig0032533:17068-17087 None:intergenic 45.0%
! CCTAGCTATTAGTCTCCTAC+AGG - tig0032533:17179-17198 None:intergenic 45.0%
CCTGTAGGAGACTAATAGCT+AGG + tig0032533:17176-17195 Msa1449340:intron 45.0%
AGGTAAATGGAACCTGCTTC+TGG - tig0032533:17677-17696 None:intergenic 45.0%
GAATTAGAAGCTCATACGGG+CGG - tig0032533:17780-17799 None:intergenic 45.0%
GGGAAGAAAGACCTGTAGAA+GGG - tig0032533:17802-17821 None:intergenic 45.0%
TGGGAAGAAAGACCTGTAGA+AGG - tig0032533:17803-17822 None:intergenic 45.0%
CACACTTAAGTCATTGGGGT+TGG + tig0032533:17829-17848 Msa1449340:intron 45.0%
TGTCTCACACCTGAATGTGA+AGG + tig0032533:17954-17973 Msa1449340:intron 45.0%
GTCTCACACCTGAATGTGAA+GGG + tig0032533:17955-17974 Msa1449340:intron 45.0%
ACTTCACACCCTTCACATTC+AGG - tig0032533:17966-17985 None:intergenic 45.0%
!! AAGGCCCTTAAAGAGTGTTC+CGG - tig0032533:18306-18325 None:intergenic 45.0%
TCCATGGGAAGTTGTGCTAA+TGG + tig0032533:18667-18686 Msa1449340:CDS 45.0%
TCCATTAGCACAACTTCCCA+TGG - tig0032533:18671-18690 None:intergenic 45.0%
ATGGGAAGTTGTGCTAATGG+AGG + tig0032533:18670-18689 Msa1449340:CDS 45.0%
GGACAACAGAGTAAGAGTAG+TGG - tig0032533:18705-18724 None:intergenic 45.0%
TACTCTTACTCTGTTGTCCG+AGG + tig0032533:18706-18725 Msa1449340:CDS 45.0%
TACAGTAAAGCCTCAGCAGT+TGG - tig0032533:18778-18797 None:intergenic 45.0%
ACTGCTGAGGCTTTACTGTA+TGG + tig0032533:18778-18797 Msa1449340:CDS 45.0%
TGATCTTCTTCTGCAGTTGG+AGG - tig0032533:18807-18826 None:intergenic 45.0%
GAAGAAGATCAATAGGCGCA+AGG + tig0032533:18816-18835 Msa1449340:CDS 45.0%
!! AAAGAATAATTTATAAATTT+GGG + tig0032533:18392-18411 Msa1449340:intron 5.0%
ATCAACGCAACGAACCACCA+TGG + tig0032533:14370-14389 Msa1449340:exon 50.0%
AGTTAGAAATGCCGCCATGG+TGG - tig0032533:14387-14406 None:intergenic 50.0%
TCGAGTTAGAAATGCCGCCA+TGG - tig0032533:14390-14409 None:intergenic 50.0%
!! GGTGTGGTTGATGAGAGAGA+TGG - tig0032533:14476-14495 None:intergenic 50.0%
CTTCGATATTCCAACGGGAG+AGG - tig0032533:14534-14553 None:intergenic 50.0%
GCCGTCTTCGATATTCCAAC+GGG - tig0032533:14539-14558 None:intergenic 50.0%
CGCCGTCTTCGATATTCCAA+CGG - tig0032533:14540-14559 None:intergenic 50.0%
CGTTGGAATATCGAAGACGG+CGG + tig0032533:14538-14557 Msa1449340:CDS 50.0%
CTCATGAATTGGGCTCGTAC+TGG + tig0032533:14587-14606 Msa1449340:CDS 50.0%
AAGAGCGGGAGCCATCTTAT+TGG - tig0032533:14762-14781 None:intergenic 50.0%
CGACTGTTTAGGAGGACTTG+TGG + tig0032533:15087-15106 Msa1449340:intron 50.0%
AGCGTATAAGCCCTCCAGAA+AGG + tig0032533:15554-15573 Msa1449340:intron 50.0%
AAGGCTCCAAGACCTCCAAA+AGG + tig0032533:15573-15592 Msa1449340:intron 50.0%
!! GGTTTCTAGTACACCTCCAG+AGG + tig0032533:15594-15613 Msa1449340:intron 50.0%
TAGTAAGGCGGCACCTCAAA+GGG - tig0032533:15642-15661 None:intergenic 50.0%
TTAGTAAGGCGGCACCTCAA+AGG - tig0032533:15643-15662 None:intergenic 50.0%
!! GCTTTTTGGGCGGTTTCTAG+AGG - tig0032533:15677-15696 None:intergenic 50.0%
GCTTGGTTTCCAAGCAACAG+GGG - tig0032533:15717-15736 None:intergenic 50.0%
TTATAGCCCGCTATGGGCTT+GGG - tig0032533:15748-15767 None:intergenic 50.0%
TTTATAGCCCGCTATGGGCT+TGG - tig0032533:15749-15768 None:intergenic 50.0%
!! CTTGAGAGTGCTCTCAAGAG+TGG - tig0032533:15774-15793 None:intergenic 50.0%
!! CACTCTTGAGAGCACTCTCA+AGG + tig0032533:15772-15791 Msa1449340:intron 50.0%
TACGTGCTCGGATGTTGTTC+TGG + tig0032533:16034-16053 Msa1449340:intron 50.0%
TGGGCAATCAAGGACCTGTT+TGG - tig0032533:17074-17093 None:intergenic 50.0%
CTGCACACTTGGCAGGTAAA+TGG - tig0032533:17690-17709 None:intergenic 50.0%
CATTTACCTGCCAAGTGTGC+AGG + tig0032533:17688-17707 Msa1449340:intron 50.0%
CAATAACCTGCACACTTGGC+AGG - tig0032533:17697-17716 None:intergenic 50.0%
TGAATGTCACTGCATGTCGG+AGG + tig0032533:17909-17928 Msa1449340:intron 50.0%
TGTCGGAGGAGGTTCATATG+TGG + tig0032533:17923-17942 Msa1449340:intron 50.0%
AATCACTTGGGATTTGGGCG+TGG + tig0032533:18238-18257 Msa1449340:intron 50.0%
!! AGGCCCTTAAAGAGTGTTCC+GGG - tig0032533:18305-18324 None:intergenic 50.0%
!! CCTAGATGGGTTGTCTCCAT+GGG + tig0032533:18652-18671 Msa1449340:CDS 50.0%
GGAAGTTGTGCTAATGGAGG+AGG + tig0032533:18673-18692 Msa1449340:CDS 50.0%
GAACGATCCTGTCACATCCT+CGG - tig0032533:18726-18745 None:intergenic 50.0%
GTAAAGCCTCAGCAGTTGGA+GGG - tig0032533:18774-18793 None:intergenic 50.0%
AGTAAAGCCTCAGCAGTTGG+AGG - tig0032533:18775-18794 None:intergenic 50.0%
AACGCAACGAACCACCATGG+CGG + tig0032533:14373-14392 Msa1449340:exon 55.0%
! TGGAGAGACGCTAAGCGTTG+TGG - tig0032533:14443-14462 None:intergenic 55.0%
CGATATTCCAACGGGAGAGG+TGG - tig0032533:14531-14550 None:intergenic 55.0%
CAGGCGAGTCCGAAAGTCAT+AGG - tig0032533:14623-14642 None:intergenic 55.0%
!! TGGTGCTGCTCGTTACGATC+TGG + tig0032533:14667-14686 Msa1449340:CDS 55.0%
GGTCTTGGAGCCTTTCTGGA+GGG - tig0032533:15567-15586 None:intergenic 55.0%
AGGTCTTGGAGCCTTTCTGG+AGG - tig0032533:15568-15587 None:intergenic 55.0%
TGGAGGTCTTGGAGCCTTTC+TGG - tig0032533:15571-15590 None:intergenic 55.0%
GGGCTTATGAATCCCTCTGG+AGG - tig0032533:15610-15629 None:intergenic 55.0%
CCAGGGCTTATGAATCCCTC+TGG - tig0032533:15613-15632 None:intergenic 55.0%
CCAGAGGGATTCATAAGCCC+TGG + tig0032533:15610-15629 Msa1449340:intron 55.0%
ACCAAAGCCCAAGCCCATAG+CGG + tig0032533:15738-15757 Msa1449340:intron 55.0%
ATGTCACTGCATGTCGGAGG+AGG + tig0032533:17912-17931 Msa1449340:intron 55.0%
GAAATGCTAACACGTGCCCC+CGG + tig0032533:18284-18303 Msa1449340:intron 55.0%
TGCCCCCGGAACACTCTTTA+AGG + tig0032533:18298-18317 Msa1449340:intron 55.0%
GCCCCCGGAACACTCTTTAA+GGG + tig0032533:18299-18318 Msa1449340:intron 55.0%
!! GCCCTTAAAGAGTGTTCCGG+GGG - tig0032533:18303-18322 None:intergenic 55.0%
!! GGCCCTTAAAGAGTGTTCCG+GGG - tig0032533:18304-18323 None:intergenic 55.0%
!! GGATCCTTAAAGAGTGCCCC+CGG + tig0032533:18413-18432 Msa1449340:intron 55.0%
!! GATCCTTAAAGAGTGCCCCC+GGG + tig0032533:18414-18433 Msa1449340:intron 55.0%
!! ATCCTTAAAGAGTGCCCCCG+GGG + tig0032533:18415-18434 Msa1449340:intron 55.0%
AGTCTTGCTAACGAGTGCCC+CGG - tig0032533:18435-18454 None:intergenic 55.0%
ACCAAATGCCCGAGCCTAGA+TGG + tig0032533:18638-18657 Msa1449340:CDS 55.0%
CCAAATGCCCGAGCCTAGAT+GGG + tig0032533:18639-18658 Msa1449340:CDS 55.0%
GAGACAACCCATCTAGGCTC+GGG - tig0032533:18649-18668 None:intergenic 55.0%
GGAGACAACCCATCTAGGCT+CGG - tig0032533:18650-18669 None:intergenic 55.0%
!! GCCTAGATGGGTTGTCTCCA+TGG + tig0032533:18651-18670 Msa1449340:CDS 55.0%
CCCATGGAGACAACCCATCT+AGG - tig0032533:18655-18674 None:intergenic 55.0%
CTGTTGTCCGAGGATGTGAC+AGG + tig0032533:18716-18735 Msa1449340:CDS 55.0%
GCAAGGACTTCCTCCATTGG+TGG + tig0032533:18833-18852 Msa1449340:CDS 55.0%
CTCACTGAGTCCACCAATGG+AGG - tig0032533:18846-18865 None:intergenic 55.0%
!! CTCCATTGGTGGACTCAGTG+AGG + tig0032533:18844-18863 Msa1449340:CDS 55.0%
GACCTCACTGAGTCCACCAA+TGG - tig0032533:18849-18868 None:intergenic 55.0%
GGCGGAGTACGTGATCTCGA+AGG + tig0032533:14556-14575 Msa1449340:CDS 60.0%
!! GGGCTCGTACTGGCTCAATC+TGG + tig0032533:14597-14616 Msa1449340:CDS 60.0%
! GGGCTTGGGCTTTGGTTGCT+TGG - tig0032533:15734-15753 None:intergenic 60.0%
CCAAAGCCCAAGCCCATAGC+GGG + tig0032533:15739-15758 Msa1449340:intron 60.0%
TCTTGCTAACGAGTGCCCCG+GGG - tig0032533:18433-18452 None:intergenic 60.0%
GTCTTGCTAACGAGTGCCCC+GGG - tig0032533:18434-18453 None:intergenic 60.0%
CCCATCTAGGCTCGGGCATT+TGG - tig0032533:18642-18661 None:intergenic 60.0%
GGCGCAAGGACTTCCTCCAT+TGG + tig0032533:18830-18849 Msa1449340:CDS 60.0%
TGGAGCGTAAGGGGTGGGTG+TGG - tig0032533:14492-14511 None:intergenic 65.0%
AGGAGGCGGTGGAGCGTAAG+GGG - tig0032533:14501-14520 None:intergenic 65.0%
GAGGAGGCGGTGGAGCGTAA+GGG - tig0032533:14502-14521 None:intergenic 65.0%
GAGGTGGTCGATGGAGGAGG+CGG - tig0032533:14515-14534 None:intergenic 65.0%
GGAGAGGTGGTCGATGGAGG+AGG - tig0032533:14518-14537 None:intergenic 65.0%
ACGGGAGAGGTGGTCGATGG+AGG - tig0032533:14521-14540 None:intergenic 65.0%
CCAACGGGAGAGGTGGTCGA+TGG - tig0032533:14524-14543 None:intergenic 65.0%
CCATCGACCACCTCTCCCGT+TGG + tig0032533:14521-14540 Msa1449340:CDS 65.0%
! ACCTCAAAGGGAGCGCGCCA+GGG - tig0032533:15630-15649 None:intergenic 65.0%
CCCGCTATGGGCTTGGGCTT+TGG - tig0032533:15742-15761 None:intergenic 65.0%
!! TGCCCCGGGGGCACTCTTTA+AGG - tig0032533:18420-18439 None:intergenic 65.0%
CTTGCTAACGAGTGCCCCGG+GGG - tig0032533:18432-18451 None:intergenic 65.0%
TCAGCAGTTGGAGGGCAGCC+GGG - tig0032533:18766-18785 None:intergenic 65.0%
CTCAGCAGTTGGAGGGCAGC+CGG - tig0032533:18767-18786 None:intergenic 65.0%
GGCGGTGGAGCGTAAGGGGT+GGG - tig0032533:14497-14516 None:intergenic 70.0%
AGGCGGTGGAGCGTAAGGGG+TGG - tig0032533:14498-14517 None:intergenic 70.0%
GGAGGAGGCGGTGGAGCGTA+AGG - tig0032533:14503-14522 None:intergenic 70.0%
GTGGTCGATGGAGGAGGCGG+TGG - tig0032533:14512-14531 None:intergenic 70.0%
! CACCTCAAAGGGAGCGCGCC+AGG - tig0032533:15631-15650 None:intergenic 70.0%
CGGCTGCCCTCCAACTGCTG+AGG + tig0032533:18765-18784 Msa1449340:CDS 70.0%
GCCCTGGCGCGCTCCCTTTG+AGG + tig0032533:15626-15645 Msa1449340:intron 75.0%
Chromosome Type Strat End Strand Name
tig0032533 gene 14254 19199 14254 ID=Msa1449340;Name=Msa1449340
tig0032533 mRNA 14254 19199 14254 ID=Msa1449340-mRNA-1;Parent=Msa1449340;Name=Msa1449340-mRNA-1;_AED=0.00;_eAED=0.00;_QI=135|1|1|1|1|1|2|335|210
tig0032533 exon 14254 14786 14254 ID=Msa1449340-mRNA-1:exon:16903;Parent=Msa1449340-mRNA-1
tig0032533 exon 18630 19199 18630 ID=Msa1449340-mRNA-1:exon:16904;Parent=Msa1449340-mRNA-1
tig0032533 five_prime_UTR 14254 14388 14254 ID=Msa1449340-mRNA-1:five_prime_utr;Parent=Msa1449340-mRNA-1
tig0032533 CDS 14389 14786 14389 ID=Msa1449340-mRNA-1:cds;Parent=Msa1449340-mRNA-1
tig0032533 CDS 18630 18864 18630 ID=Msa1449340-mRNA-1:cds;Parent=Msa1449340-mRNA-1
tig0032533 three_prime_UTR 18865 19199 18865 ID=Msa1449340-mRNA-1:three_prime_utr;Parent=Msa1449340-mRNA-1
Gene Sequence

>Msa1449340

ATGGCGGCATTTCTAACTCGAACATCTTCACGATTCTCTCAATTATCTTCACCACAACGCTTAGCGTCTCTCCATACAACCCTTCCATCTCTCTCATCAACCACACCCACCCCTTACGCTCCACCGCCTCCTCCATCGACCACCTCTCCCGTTGGAATATCGAAGACGGCGGAGTACGTGATCTCGAAGGTTGATAATCTCATGAATTGGGCTCGTACTGGCTCAATCTGGCCTATGACTTTCGGACTCGCCTGTTGTGCTGTTGAAATGATGCATACTGGTGCTGCTCGTTACGATCTGGATCGATTTGGTATCATTTTTCGACCTAGTCCTCGTCAATCTGATTGTATGATTGTTGCTGGTACTCTTACCAATAAGATGGCTCCCGCTCTTCGCAAGGTGTATGACCAAATGCCCGAGCCTAGATGGGTTGTCTCCATGGGAAGTTGTGCTAATGGAGGAGGATACTACCACTACTCTTACTCTGTTGTCCGAGGATGTGACAGGATCGTTCCTGTTGATATTTATGTTCCCGGCTGCCCTCCAACTGCTGAGGCTTTACTGTATGGACTCCTCCAACTGCAGAAGAAGATCAATAGGCGCAAGGACTTCCTCCATTGGTGGACTCAGTGA

Protein sequence

>Msa1449340

MAAFLTRTSSRFSQLSSPQRLASLHTTLPSLSSTTPTPYAPPPPPSTTSPVGISKTAEYVISKVDNLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLHWWTQ*